Process:
1. =======================================================================
Obtain sanger/CHROMOSOME *.dna.gz *.agp and *.gff.gz files are from:
ftp://ftp.sanger.ac.uk/pub/C.elegans_sequences/CHROMOSOMES/CURRENT_RELEASE/
(which is the same as: /pub2/wormbase/WS96/CHROMOSOMES/ )
As of 26 February 2003. The dates on the files are the same as they
were at the FTP site (ncftp maintained the dates during the transfer)
The M.dna.gz is the same one as is found in worm/idb and worm/idb.future
and is merely a copy from ../idb.future/sanger/M.dna
2. ========================================================================
The nt4/*.nt4 files are created from the sanger/CHROMOSOMES using
fatont4 encapsulated in the script: ./nt4/dna2nt4
The makefile takes care of running this script correctly.
3. ========================================================================
The features/sanger/c2g and features/sanger/genes.gdf are created
from the sanger/*.gff.gz files by running gffgenes
(which is modified to read the sanger/*.gff.gz files via a gzip pipe)
The makefile takes care of running this command correctly.
4. ========================================================================
mRNA_title.gb obtained from http://www.ncbi.nlm.nih.gov/entrez/
with a search on "nucleotide" and a search string of:
mRNA[Title] AND Caenorhabditis Elegans[Organism]
resulting in 214900 matches, downloaded in "GenBank" format
and a pretty significant file:
-rw-rw-r-- 1 hiram 572034420 Mar 2 00:28 mRNA_title.gb
5. ========================================================================
Apache/2.2.3 (Red Hat) Server at genome-test.cse.ucsc.edu Port 80