LOCUS CEL496235 2421 bp mRNA linear INV 20-FEB-2003 DEFINITION Caenorhabditis elegans mRNA for peptide O-xylosyltransferase (sqv6 gene). ACCESSION AJ496235 VERSION AJ496235.1 GI:28460480 KEYWORDS peptide O-xylosyltransferase; sqv6 gene. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 AUTHORS Wilson,I.B.H. TITLE Cloning of Caenorhabditis elegans xylosyltransferase cDNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 2421) AUTHORS Wilson,I.B.H. TITLE Direct Submission JOURNAL Submitted (18-JUL-2002) Wilson I.B.H., Institut fuer Chemie, Universitaet fuer Bodenkultur, Muthgasse 18, A-1190, AUSTRIA FEATURES Location/Qualifiers source 1..2421 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" gene 1..2421 /gene="sqv6" CDS 1..2421 /gene="sqv6" /EC_number="2.4.2.26" /function="proteoglycan biosynthesis" /codon_start=1 /product="peptide O-xylosyltransferase" /protein_id="CAD42732.1" /db_xref="GI:28460481" /translation="MLFNGTTKYRDYAIVISLFFLLNVYLLYNTAQHTQVGNSKHISS DSGEKTSNPLPSCEITDDLAKSAISRAITPSCKAKLQLEACQLKNGTFTINFPENQCP NHDSRLIDQRIGCFLDKKEARVLTEFEYKLPKSNGKATCRKHCYKAGFLYFGLEFGHE CFCGNDVSNATAVDDVECRAYKCPGNENSEEFCGGFNAVEIFRTGFRSKVNHRKPTYL PPSSDSIKNPVKILFLLQLNGRNERQVKRFLKSIYLPHHYYYIHVDARQNYMFSEMQK VADFLDNIHITERRFSTIWGGASLLQMFLQVIRDSMKIEKFKDWDYIINFSESDFPIL PISDFERLITVNNGKSFLASHGYNTGKFIQKQGFEYVFSECDNRMFRIGKREFPQNLR IDGGSDWVGIHRNLAEFSISDEELPRKLRKTYESILLPLESFYHTLAFNSEFCDDLLM SNLRLTNWYRKQGCRCASLKPIVDWCGCSPLVFREETMKKFELQKAISKPTYFARKFD SMVDIDSIEAAEMQSISPEKLQLNHPTYHFAFANIFKTGIDEQKLHFESLANFALKST ETRAKFRKVLRIDALRAHHNALIEIVMKIETTDGATFEFLIHRLSHVNLTENEEKLVE HGYLLRAVSFGTKFEWKEELCREYMGFVTDNDTLHTRLQWHPTEHVKKVGDKTSPEMI FKYRKGDELIEQTVVKPYDSVFGGQFDSWNVGKKLSNLTTCSNFFVDIISPSSPDDAP PLATLHFPVYTDQNAHCHVDYLRQFFKIADFCTSGDACKEKIWSTSYPDPKSDIFVGY DEDTQTLI" BASE COUNT 739 a 498 c 516 g 668 t ORIGIN 1 atgttattca acgggacgac taaatatcga gattatgcga ttgtgatatc attattcttc 61 ctgctaaacg tctatttatt gtacaatacg gctcaacaca cgcaagtcgg aaattcgaag 121 catatttcgt cggatagcgg tgaaaaaacg tcgaatcctc ttccatcatg cgaaatcaca 181 gatgacctgg cgaaaagtgc aatttcccgt gcaattactc catcctgcaa agcaaaactg 241 cagctggaag cttgtcaact gaaaaatggg acttttacaa taaattttcc ggaaaatcaa 301 tgcccgaacc acgatagccg gcttatcgac caacgaatcg gctgtttttt ggacaaaaaa 361 gaggctcgag tgctcacaga gttcgagtac aaacttccaa agtcaaatgg gaaagcgacg 421 tgtcgaaagc actgctataa agctggtttt ttgtatttcg gacttgaatt cggacacgaa 481 tgcttctgtg ggaatgatgt atcaaatgcg acggcggttg atgacgtgga atgtcgggcg 541 tataaatgtc cgggaaatga gaactcggag gagttctgtg gtggattcaa tgcagtcgag 601 atttttagga caggatttag aagcaaagtg aatcaccgca agccgacata tcttccacct 661 agcagcgatt ctatcaaaaa tcccgtcaaa attctcttcc ttcttcaatt aaatggtaga 721 aatgagcgtc aagtgaaacg atttctcaaa tcaatttatc ttccacatca ttattactat 781 atccacgtgg atgcacgtca gaattacatg ttctcagaaa tgcaaaaagt tgctgatttt 841 ctggataata ttcatataac cgaacggaga ttcagcacaa tttggggtgg agcatcactt 901 ttacaaatgt ttctgcaagt gattagggat tcgatgaaaa ttgagaaatt caaggattgg 961 gattatatta ttaatttctc ggaaagtgat ttcccgattc taccgatttc cgattttgag 1021 agacttatca ctgtaaacaa cggaaaatca ttcctggcct cacacggcta caacactgga 1081 aaattcattc aaaaacaagg attcgaatac gtgttctccg aatgcgataa tcgaatgttc 1141 cgtatcggaa aacgcgaatt tccacaaaat ctacgaattg acggcggatc cgattgggtt 1201 ggaattcatc gaaatctcgc cgaattttcg atttccgacg aggaattgcc tcgaaaattg 1261 cgaaaaacgt atgaaagtat acttctacca ctggaatcat tctatcatac tcttgcgttc 1321 aattccgaat tctgtgatga tctactgatg agcaatttgc ggcttacgaa ttggtacagg 1381 aaacagggat gtcggtgtgc ttcattgaag cctattgttg attggtgtgg atgttcgccg 1441 ctggtttttc gtgaagaaac tatgaagaaa tttgagcttc aaaaagccat ctccaaacca 1501 acctactttg cccgaaaatt cgatagtatg gtagatatcg attcaattga agccgccgaa 1561 atgcaatcaa tttcacctga aaaacttcaa ttaaatcatc cgacctatca tttcgctttt 1621 gcaaatattt tcaaaactgg aatcgacgag cagaagcttc atttcgaaag tttggcgaat 1681 ttcgcgctga aatccaccga aactcgggca aaattccgaa aagttttgcg aatcgatgct 1741 cttcgagctc atcataatgc tctcatcgag attgtcatga aaatcgaaac gacggacggc 1801 gcgacgtttg aatttttgat tcatagactg tcccatgtga atttgacgga aaatgaggag 1861 aagcttgtgg agcacggata tctattgaga gctgtatcgt ttggaacaaa atttgaatgg 1921 aaagaggagc tttgcaggga atatatggga tttgtcactg ataacgacac tcttcacacc 1981 cgcttgcaat ggcatccgac agaacatgtg aaaaaagttg gagacaagac gagtcccgaa 2041 atgatattca aatatcgaaa aggcgatgag ctcattgagc aaactgttgt aaagccgtac 2101 gattcagtgt ttggaggaca atttgatagt tggaatgttg ggaaaaaact ctccaacctg 2161 acgacctgtt ccaatttctt cgtcgacatc atctccccat cgtcacccga tgatgctcca 2221 ccgctcgcca cactacattt tcccgtttac actgatcaaa acgcgcattg ccacgtggat 2281 tacctacgcc agttcttcaa aattgccgat ttttgcactt ccggcgacgc ttgcaaggaa 2341 aagatctgga gtacgagcta tcccgatccg aaatcagata tttttgtcgg atacgatgag 2401 gatacgcaga ccttgattta g // LOCUS AY090484 1989 bp mRNA linear INV 21-FEB-2003 DEFINITION Caenorhabditis elegans low-affinity dicarboxylate transporter INDY1 (indy-1) mRNA, complete cds. ACCESSION AY090484 VERSION AY090484.1 GI:28458969 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1989) AUTHORS Fei,Y.J., Inoue,K. and Ganapathy,V. TITLE Structural and Functional Characteristics of Two Sodium-coupled Dicarboxylate Transporters (ceNaDC1 and ceNaDC2) from Caenorhabditis elegans and Their Relevance to Life Span JOURNAL J. Biol. Chem. 278 (8), 6136-6144 (2003) MEDLINE 22476976 PUBMED 12480943 REFERENCE 2 (bases 1 to 1989) AUTHORS Fei,Y.-J., Inoue,K. and Ganapathy,V. TITLE Direct Submission JOURNAL Submitted (18-MAR-2002) Biochemistry, Medical College of Georgia, 1120 15th Street, Augusta, GA 30912, USA FEATURES Location/Qualifiers source 1..1989 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="X" gene 1..1989 /gene="indy-1" CDS 22..1770 /gene="indy-1" /codon_start=1 /product="low-affinity dicarboxylate transporter INDY1" /protein_id="AAM11893.1" /db_xref="GI:28458970" /translation="MARKRGISSLLLIYKQSFVIWGALLIFSPLLMFVGDSHGLQAKC LYCVAVMGSYWVFEALPLAITAFIPMILFPLFGIMRSEEVARAYLPDTCFLFMGGLMV ALAVEKCELHARVALFVLKTVGSEPARVMAGFMGVTGFLSMWISNTATTALMVPILQS VITELVSNHRMEDLVALCEAHHNSSRKHSVGMRRLSLPNENNEIKREEMDTAMSPREQ KMAKGLMLSVCFSANIGGAATITGTASNLVLVGQLNELFPGADTGVNFLSWLIFAFPM VFCCLIYCWCVLYLLYLRDAPKGSIIVTRKLQQKYNELHAFSFAEMAVIFCFALLLVL WILREPQVVPGWGEMFKDEFVSDATSAMFIVILLFTLPEKLPSSRGSSEQRKASSGLL DWATVQDRFPWSVLFLLGGGFALAAGVKESGLSHDIGAIMRYLDVFNHNIIMLICIII SVTLTNVCSNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI VFSSGYLKVFDMFVSGLCVTLGCVVLSMLNMLLWAGFVFNLHLFPQWAANPSPPLDVQ DWAVENNITFVGTSKL" BASE COUNT 523 a 417 c 422 g 627 t ORIGIN 1 caagtttgag agcctccaat catggcacga aaacgaggaa tttcatcgct tctgcttatt 61 tacaaacagt catttgtaat ttggggtgct cttcttatat tttcaccatt attgatgttt 121 gttggggatt cgcatggcct ccaagcaaaa tgtctctact gtgtcgctgt catgggctcc 181 tactgggtat ttgaagctct tccacttgct atcactgctt tcatcccaat gattcttttc 241 ccactatttg gaattatgag atcagaggaa gttgcaagag cgtacctgcc ggacacttgc 301 tttcttttta tgggtggttt gatggtagcc ctggcagtcg aaaagtgcga gttgcacgcg 361 agagttgctt tgtttgtatt gaaaactgtg gggtcggaac cagcaagagt tatggcagga 421 tttatgggtg tcactggatt tttgagtatg tggatctcaa acacggcaac tacagctcta 481 atggtgccaa ttctgcaaag tgtgatcacc gagctggtat ccaatcaccg aatggaagat 541 ttggttgcgt tgtgtgaagc tcatcacaat agcagtagaa agcatagtgt tggaatgaga 601 cggctatcgc taccgaatga aaataacgaa attaagcgag aagaaatgga cactgcaatg 661 tcaccaagag aacaaaaaat ggccaagggt cttatgctaa gtgtctgctt ctcagcaaat 721 attggtggag ctgcaacaat tactggtact gcttctaatt tagtgttggt gggacagttg 781 aatgaactct tcccaggagc agacactgga gtcaacttcc tatcatggct tatttttgcg 841 ttcccaatgg ttttctgctg tctcatttat tgctggtgtg ttctctacct gctttatctt 901 cgtgatgctc caaagggatc aattattgta acaagaaagc ttcaacaaaa atacaacgag 961 cttcatgcat tctcctttgc cgagatggct gtcattttct gctttgctct gcttctagtt 1021 ttatggattc ttcgagagcc acaagttgtt ccaggctggg gtgaaatgtt caaggacgaa 1081 tttgtatccg atgccaccag tgctatgttc attgtgattc ttcttttcac tcttccagaa 1141 aaacttccaa gctctagagg aagctccgaa cagagaaaag ccagcagcgg tcttctcgat 1201 tgggctactg tccaggatag attcccatgg agtgttcttt tcctcctcgg aggtggattt 1261 gcgttagccg caggtgttaa ggagtccgga ctttctcatg acatcggggc tattatgcgt 1321 tatttggatg tgttcaacca caacattatc atgctcattt gtatcattat tagtgttacg 1381 cttaccaacg tttgctctaa tacagtgatt gcgtcgattt tcattccaat tgtagcagaa 1441 ttggcaagat cgctagagat tgatccattg aacttcatgc tcccagtcac catatcagcc 1501 tcattcgctt tcctcctacc agtggctaca ccaccaaatg caattgtgtt ctcctcggga 1561 tatctgaaag tttttgatat gtttgtctcc ggtctctgtg tcacccttgg atgtgtagtc 1621 ctctcaatgc tgaacatgct cctttgggcc ggatttgtct tcaatcttca cctattccca 1681 caatgggccg ccaatccatc tccaccgctg gacgttcagg actgggccgt cgaaaacaat 1741 atcacttttg tgggaacttc aaaactttaa atatattctg cctctcttta gattttgtat 1801 agttctgttc ttttctgtgc catcaatatg tgttcaattc gaatcatgga aaagctttca 1861 cttataaata ttccccctct caacggatga attgaccgtg tcaattgatt agttcttatt 1921 gaatcaataa acattgaaag ttaggaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1981 aaaaaaaaa // LOCUS AY090485 2250 bp mRNA linear INV 21-FEB-2003 DEFINITION Caenorhabditis elegans high-affinity plasma membrane transporter INDY2 (indy-2) mRNA, complete cds. ACCESSION AY090485 VERSION AY090485.1 GI:28458810 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2250) AUTHORS Fei,Y.J., Inoue,K. and Ganapathy,V. TITLE Structural and Functional Characteristics of Two Sodium-coupled Dicarboxylate Transporters (ceNaDC1 and ceNaDC2) from Caenorhabditis elegans and Their Relevance to Life Span JOURNAL J. Biol. Chem. 278 (8), 6136-6144 (2003) MEDLINE 22476976 PUBMED 12480943 REFERENCE 2 (bases 1 to 2250) AUTHORS Fei,Y.-J., Inoue,K. and Ganapathy,V. TITLE Direct Submission JOURNAL Submitted (18-MAR-2002) Biochemistry, Medical College of Georgia, 1120 15th Street, Augusta, GA 30912, USA FEATURES Location/Qualifiers source 1..2250 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="III" gene 1..2250 /gene="indy-2" CDS 51..1751 /gene="indy-2" /codon_start=1 /product="high-affinity plasma membrane transporter INDY2" /protein_id="AAM11894.1" /db_xref="GI:28458811" /translation="MSLSLHLSGWPENSESRQRMLESSSSTNFVQHFVSREISNKERL LSLFRRLRNGLVLVLTPLFFGQMLNWEGPEWKCAYCVCIIAVYWMSEVMPLAVTAMLP VVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALSVLRCVGSEP KWIMLGFMTVTALLSSFISNTATTAMMVPIGQSVVQQLISSFQHHPTNGERGRLGCKK MATGLVLSICFAANIGGTGTATGTPSNLVMLGQLSALFPKVDGSLNYVTWIFFAYPLM LLCLFVAWMTLVSFFLRDAPEKDEAVTEMLKTRYNELPRMTYAEKSVFVCFCILLSLW VFRNPGVVPGFGVFFKKGAYTDATSAMIVAFLLFVLPSERPDLATYIKKEDLKKRGCL MDWKTMQETFPWSVVLLLGGGFALAAGVKESGLSLLIGNSLSSIEHLPLWILQLLTML IAMVITNICSNTVTASIFVPIVATLAQRAGHHPFTLMLPTTLASSFAFIFPVGTPPNA IVFGSGMVKVSDMAFVGGIISLELLVLTVLYMNSIAYLTLPLLEFPTWAIIANSTMQQ " BASE COUNT 605 a 481 c 428 g 736 t ORIGIN 1 caataaaccc ataatctgta atactggaac tacaacaaga atacggtaca atgtcattat 61 ccctccatct atccggttgg ccagagaaca gtgaaagtcg acaacggatg cttgaaagct 121 cgtcgagcac caatttcgtg cagcactttg tctccagaga gatttccaac aaggaacggc 181 tgttgagtct ttttcgtcgt ttgagaaatg gtcttgttct tgttctaact ccattattct 241 ttggacaaat gctcaattgg gagggaccgg aatggaaatg tgcgtattgt gtgtgcataa 301 tcgctgtata ttggatgtca gaagtaatgc cattggctgt aaccgcaatg cttcctgtcg 361 tactgttccc attggttgga gtacttgacg ctaacacgac agcaaaagaa tacatgaatg 421 acacaaattt cctgttcatt ggaggtctaa ttatggcggc agcagttgag aagtgtgatc 481 tacacgaacg tgttgccctt tcagtattac gatgcgtagg aagtgagccg aaatggatca 541 tgcttggctt catgactgtc accgcattgc tgagcagttt tatatcaaat actgcgacaa 601 ctgcaatgat ggttccgatt gggcaaagtg ttgtgcagca gttgatttca tccttccaac 661 accatccaac aaatggagaa cgtggccgtc tgggatgcaa gaaaatggcg acgggacttg 721 tactttccat ttgtttcgct gcaaatattg gaggaactgg aactgcaacg ggaactccta 781 gcaatttggt catgttggga caactcagcg cactcttccc aaaagtcgat ggatcactga 841 actacgtaac atggatcttc tttgcttacc cattgatgct tctgtgcctt ttcgttgctt 901 ggatgactct tgtttccttc ttcttgagag atgctccgga aaaagatgaa gctgtaactg 961 aaatgctgaa aactcgatac aacgaacttc caagaatgac atatgctgaa aaatctgtat 1021 ttgtctgttt ctgcattctc ctctcacttt gggttttccg taatcctgga gtcgtccctg 1081 gatttggagt tttcttcaaa aaaggagcat atacggatgc cacgtcggca atgatcgttg 1141 ccttcctcct gtttgttctt ccatctgaaa gacccgactt ggcaacttat atcaagaaag 1201 aagatttgaa aaagagagga tgtctgatgg attggaaaac aatgcaggaa acattcccat 1261 ggagtgttgt acttcttttg ggtggaggtt ttgcattggc tgctggagtt aaagaatctg 1321 gattgtcact tttaattgga aatagtctat cttctattga acatcttcca ctttggattc 1381 ttcaattatt aactatgctc attgcaatgg tcatcacaaa tatctgctca aacactgtca 1441 ctgcttcaat ttttgttccg attgttgcaa cacttgctca aagagctgga catcacccat 1501 tcaccctcat gcttccaacc acattggctt catctttcgc attcattttc ccagttggaa 1561 caccaccaaa tgcaattgtg tttggaagtg gaatggtgaa agtttctgat atggcattcg 1621 ttggcggtat catttcattg gaacttttgg tattgacagt tctctacatg aatagtattg 1681 catacttgac tcttccatta ctcgaattcc caacatgggc gattattgca aactcgacaa 1741 tgcaacaata gacacattct tcacctactt tttaattgtt acttccattt tcttaccatc 1801 ttttttctct tttctcttgc tcttatcttg ttccatacat tccttaggat gtctatcttc 1861 ttctgggtat tctgattcaa ccttttttgg tcatcctctt cctttgcctc ttcccacacc 1921 cagaaccatt tctcaaacat ctacatgact tagtcattct tgttacggga acttcagtca 1981 aatcacactt gttgcaaacg ctcaccccat catcaaaaaa aacttgaaat ttcaaaaaac 2041 aacttaacag atcttctatt acaaaccgtt tatttttctt ttcttgctgt gttatctaga 2101 atgtagattc gttttcttac tcggttttac ttcttgaagc ttatcgtctt ccctggtgaa 2161 tttataaact actttgctcc gcatttttgt gtatttttga attaaaataa atgcattcac 2221 cggtgaaaaa aaaaaaaaaa aaaaaaaaaa // LOCUS AY204206 1511 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk819c6 nuclear receptor NHR-117 mRNA, complete cds; alternatively spliced. ACCESSION AY204206 VERSION AY204206.1 GI:28396090 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1511) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1511) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1511 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="F16B4.12" /clone="yk819c6" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 26..1459 /note="alternatively spliced" /codon_start=1 /product="nuclear receptor NHR-117" /protein_id="AAO39207.1" /db_xref="GI:28396091" /translation="MQNSIDFCSASSSTSSNYSSPPAVLDIDQVLEKCQICYQPGHGY HFGAFICRACAAFFRRCHFSLALDQRKCRLLSGSCQPNKNGRWFCKKCRFDKCLELGM TTTNIQYDRDAFKSSASFLKNKSVAKRVADRVSVPMQFSSNQRHVIYNVKNVFQTPPT ALGKAGRTLDETDQRILCQNTVESALGINPIMIFTYADENKQFPFIDISQLVDKALSS ILTPISVRKIKKMSNLEQLTQGLDEFQWTQKESVSQIVRLSANDHLNDFQTYMCAAAK WLSYSDRIRNLDDELKIQILQCIWFNWGRLERIATTAKMRNKRKCGKKQFVFSNNILL DYDEMSSDLSFWSNYTFEEMKYFFIPTEMFYDEVICEMEEVQPDNMETTFIISLMCFH LTGKQFGGQVQEEMDQLQDLLSDELHEYYLKKNMTMYSLRLKQLMKIKEKFLKLRYKR CEKYKIAGIFEAFHTNLSNPEFFMIPA" BASE COUNT 510 a 267 c 297 g 437 t ORIGIN 1 ggtttaatta cccaagtttg agaaaatgca aaattctatc gatttctgtt ctgcctcatc 61 gtcgacaagt tccaattatt cttcaccgcc ggctgtatta gacatcgatc aagttctcga 121 aaaatgccaa atttgctacc aacctggtca tggctatcat tttggagcgt ttatttgtcg 181 tgcatgtgct gcgttttttc gacgatgcca tttttcattg gcactcgatc agagaaaatg 241 ccgactgttg tcaggatctt gtcagccgaa taaaaatggg agatggttct gtaagaagtg 301 tcgttttgac aaatgtttgg aactgggaat gaccactaca aatattcaat atgatcgaga 361 tgcattcaaa tcgtcggctt cttttttgaa aaataaatca gtagcgaaaa gagtcgccga 421 tcgagtttct gttccaatgc agttctcatc aaaccaacga cacgtaatat acaatgttaa 481 aaacgttttt caaacaccac caactgcact cggaaaagca gggcgaacgc tagacgaaac 541 cgatcagagg attttgtgcc agaatacggt cgaatcagcg cttggcataa atcctatcat 601 gatttttaca tatgccgacg aaaataaaca attcccattt attgatatat cacaacttgt 661 ggacaaggca ttgtcatcaa tcctcacgcc aatatcagtc cgaaaaatta aaaagatgag 721 caacttagag cagctgactc aaggattaga cgagtttcag tggactcaaa aagaaagtgt 781 ttcgcaaatc gtccgtctat ctgcaaacga tcacttgaat gattttcaaa catacatgtg 841 tgcagcggca aaatggctgt catattcgga tagaattcga aatttggatg atgaattgaa 901 aatacaaatt ttgcaatgta tttggttcaa ctggggacgg ttagaacgaa tcgcaacgac 961 ggcaaaaatg aggaataaac ggaagtgtgg gaaaaagcag tttgtatttt cgaataatat 1021 actacttgac tacgatgaaa tgtcttctga tttgagcttc tggtcaaatt atacattcga 1081 ggaaatgaaa tactttttta taccgactga aatgttttac gatgaggtga tttgtgaaat 1141 ggaagaagta caacctgaca atatggaaac tactttcatt ataagcctta tgtgcttcca 1201 tctaacagga aaacaatttg gtgggcaagt tcaagaagaa atggatcaac tgcaagatct 1261 cttatcggat gaacttcacg agtattatct aaagaaaaat atgacgatgt actctttgcg 1321 actcaagcag ttgatgaaaa tcaaggaaaa gttcctcaag cttcgatata aacgctgtga 1381 aaaatataag attgcaggaa tatttgaggc gtttcatacg aacttgtcaa atcccgagtt 1441 tttcatgatt cctgcttaaa gagagctttt taaaataata aattgataat attttcaaaa 1501 aaaaaaaaaa a // LOCUS AY204205 1910 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk808h6 nuclear receptor NHR-117 mRNA, complete cds; alternatively spliced. ACCESSION AY204205 VERSION AY204205.1 GI:28396088 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1910) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1910) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1910 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="F16B4.12" /clone="yk808h6" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 26..451 /note="alternatively spliced" /codon_start=1 /product="nuclear receptor NHR-117" /protein_id="AAO39206.1" /db_xref="GI:28396089" /translation="MQNSIDFCSASSSTSSNYSSPPAVLDIDQVLEKCQICYQPGHGY HFGAFICRACAAFFRRCHFSLALDQRKCRLLSGSCQPNKNGRWFCKKCRFDKCLELGM TTTNIQYDRDAFKSSASFLKNKSVAKRVADRVSVPMVRS" BASE COUNT 653 a 352 c 366 g 539 t ORIGIN 1 ggtttaatta cccaagtttg agaaaatgca aaattctatc gatttctgtt ctgcctcatc 61 gtcgacaagt tccaattatt cttcaccgcc ggctgtatta gacatcgatc aagttctcga 121 aaaatgccaa atttgctacc aacctggtca tggctatcat tttggagcgt ttatttgtcg 181 tgcatgtgct gcgttttttc gacgatgcca tttttcattg gcactcgatc agagaaaatg 241 ccgactgttg tcaggatctt gtcagccgaa taaaaatggg agatggttct gtaagaagtg 301 tcgttttgac aaatgtttgg aactgggaat gaccactaca aatattcaat atgatcgaga 361 tgcattcaaa tcgtcggctt cttttttgaa aaataaatca gtagcgaaaa gagtcgccga 421 tcgagtttct gttccaatgg tgagatcttg aacatttaaa aaagttgttt gaatattcaa 481 ttacacatag ttttcatcgc atgaaaacgc agcaaaagta tcaatataaa aatcttccat 541 gcagacgtaa aataggcata caaagtctgc gcggagcccg cttttagcac tcggacggaa 601 acattgtatc acgtatccat gttcgagtga gaaaaatcgc cacatcttac gcgcaaaaag 661 cacctgcgtc tctttttctc gcacgctgtc taacgtctat tcaaaacgcc tatggcgaga 721 gagcgtgtgg agaagagaga cgcagacgtt tcagcagttc tcatcaaacc aacgacacgt 781 aatatacaat gttaaaaacg tttttcaaac accaccaact gcactcggaa aagcagggcg 841 aacgctagac gaaaccgatc agaggatttt gtgccagaat gtaaaacacg caatttcata 901 ttacacatat aaatttcaca aacttttcca ataacaatta aaaacaccta aacaaatttc 961 agacggtcga atcagcgctt ggcataaatc ctatcatgat ttttacatat gccgacgaaa 1021 ataaacaatt cccatttatt gatatatcac aacttgtgga caaggcattg tcatcaatcc 1081 tcacgccaat atcagtccga aaaattaaaa agatgagcaa cttagagcag ctgactcaag 1141 gattagacga gtttcagtgg actcaaaaag aaagtgtttc gcaaatcgtc cgtctatctg 1201 caaacgatca cttgaatgat tttcaaacat acatgtgtgc agcggcaaaa tggctgtcat 1261 attcggatag aattcgaaat ttggatgatg aattgaaaat acaaattttg caatgtattt 1321 ggttcaactg gggacggtta gaacgaatcg caacgacggc aaaaatgagg aataaacgga 1381 agtgtgggaa aaagcagttt gtattttcga ataatatact acttgactac gatgaaatgt 1441 cttctgattt gagcttctgg tcaaattata cattcgagga aatgaaatac ttttttatac 1501 cgactgaaat gttttacgat gaggtgattt gtgaaatgga agaagtacaa cctgacaata 1561 tggaaactac tttcattata agccttatgt gcttccatct aacaggaaaa caatttggtg 1621 ggcaagttca agaagaaatg gatcaactgc aagatctctt atcggatgaa cttcacgagt 1681 attatctaaa gaaaaatatg acgatgtact ctttgcgact caagcagttg atgaaaatca 1741 aggaaaagtt cctcaagctt cgatataaac gctgtgaaaa atataagatt gcaggaatat 1801 ttgaggcgtt tcatacgaac ttgtcaaatc ccgagttttt catgattcct gcttaaagag 1861 agctttttaa aataataaat tgataatatt ttcaaaaaaa aaaaaaaaaa // LOCUS AY204204 1465 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk796b10 nuclear receptor NHR-116 mRNA, complete cds. ACCESSION AY204204 VERSION AY204204.1 GI:28396086 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1465) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1465) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1465 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="F09C6.9" /clone="yk796b10" misc_RNA <1..19 /product="trans-spliced leader sequence SL-1" CDS 27..1373 /codon_start=1 /product="nuclear receptor NHR-116" /protein_id="AAO39205.1" /db_xref="GI:28396087" /translation="MIHSRCSTSTDEPVDLPEFSLSPPALSAEPSTSSPSKKSIGSRV ERPTECLVCGRSAHGYHYNVASCNGCKTFFRRMCLSGRSFSCKLDRDCFDLTKRKTPA KCRACRLQRCLSVGMDPGAMEVDEKAASSSTYKSLLKRSKVKEEDQDDCQIIALVSNN SKKPWELVKSLENKLQNTIDMLVYLESKVEKFRKSSYNPDWNEMDGLEFLLKTESRIG FADRYGPMKECPIRSDQKKLPPPPHPSSAKFGGPKHNPDRKQWMYFNLFTTVEYAKTF MFFHRLDSRDKFILTKHITLSCMNLHLSYISVARKSEVLTNPDGTSFPSRTQAHYTSK TMSVAPLIRYQIQYIEYTLLKAICLCNPAVPDLSHHAQEILSKEREKYADALFDYCLR TRNDGPSHFAQLMQIFDVLERQQKLQKDLHLLYILPTLAHAPKCLVIRVIEDIMES" BASE COUNT 448 a 322 c 296 g 399 t ORIGIN 1 ttaattaccc aagtttgaga tactccatga tacattctcg ttgctcaact agtactgatg 61 agcccgtcga tcttccggag ttttcactct ctccgcctgc gctctccgca gaaccaagta 121 catctagtcc atccaaaaag tcaatcgggt ctcgtgtgga aaggccaacc gagtgtttag 181 tatgtggaag atctgcgcac ggatatcatt ataatgtggc ctcgtgtaac gggtgcaaaa 241 catttttccg gaggatgtgc ttgtcgggaa ggagttttag ctgtaaattg gatcgagatt 301 gtttcgattt gacgaagaga aaaactcccg caaaatgtcg agcatgccgg cttcaaaggt 361 gtctatcagt tggaatggat cctggagcaa tggaagttga cgaaaaagca gcttcatctt 421 caacctacaa atctctgcta aaacgctcga aagtgaaaga ggaagaccaa gatgattgcc 481 aaataattgc tctagtatca aataattcaa agaaaccgtg ggaattagtt aaatccttgg 541 agaacaagct gcaaaacaca atcgatatgc tagtgtactt ggagtcgaaa gtcgagaaat 601 ttcgaaaatc ctcttataat ccggactgga acgaaatgga cggtctggaa tttttactaa 661 agactgagag ccggataggg tttgctgatc gatatgggcc aatgaaagaa tgccctatca 721 gaagtgatca gaagaaactt cctcctccac ctcatccctc atcagcaaag ttcggaggac 781 caaagcataa ccctgacaga aaacaatgga tgtacttcaa cttgttcacc accgtagagt 841 acgcgaagac gttcatgttt ttccataggc tcgactccag agacaaattt attctgacaa 901 agcatatcac attgtcttgt atgaatctgc atctctccta catctcggtc gccaggaaat 961 cagaagtttt gacgaatccc gacggaacaa gctttccttc cagaacccaa gcccactaca 1021 cttcaaaaac aatgtcggtc gctcctctaa ttcggtatca aattcagtac atcgagtaca 1081 cgcttctcaa agcaatttgc ttatgtaatc cagccgttcc cgatctctct caccacgctc 1141 aggaaatact ttcaaaagaa cgggaaaaat atgcggacgc tttattcgac tattgcctcc 1201 gaactcgaaa tgatgggcca tcacactttg ctcagctgat gcagattttc gatgttctgg 1261 agcgccaaca gaagcttcaa aaagatctcc atttgcttta tattctgcca actttggctc 1321 atgctccaaa gtgtcttgtt atccgtgtca ttgaggatat tatggaatcg tgatttttat 1381 tttacttact attagtgcgg agtttacgaa ttaccgtatt cactttgaaa ataaattttg 1441 aaaattttaa aaaaaaaaaa aaaaa // LOCUS AY204203 1279 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk827f4 nuclear receptor NHR-115 mRNA, complete cds. ACCESSION AY204203 VERSION AY204203.1 GI:28396084 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1279) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1279) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1279 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="T27B7.4" /clone="yk827f4" CDS 28..1203 /codon_start=1 /product="nuclear receptor NHR-115" /protein_id="AAO39204.1" /db_xref="GI:28396085" /translation="MKKVLFPCQICGQNSHGTHFGIVSCRACAAFFRRSVNSKWARKG CLTNFKDKGSCFCKPCRLRKCVEIGMDASKFQYDRDAISAIKHPKIFPSVSYYVGRPE FLMFSDSNVTSQKTFIDVQNLVFEVSRYLDHGCETPIYAENQLKKLTLGFKLMQFDYQ NVKFFDKIGKAEFIDIIEYYFLTVAKWIAHFDEFRKLDQSLQIKLLQAIWHVWSKIHK CASTAFYRKSNPNAKPTQKILRNVCMDRMHVHKLDTSWMSDYPTEHVTRFMLTHHVYD FKIVESLLKLDPTDVELTFMFAQLCFEYAGKRFQGEILKITDHFQQVLSNDLHHYYIT DQRRERYFQRLTDLMKVNNLIQRSIWETRPHRELGRVFEISKLEFSHPEMFDDSGFC" BASE COUNT 434 a 220 c 236 g 389 t ORIGIN 1 atcactttat agtttgaaaa aaaaactatg aaaaaagtat tgtttccttg ccaaatttgc 61 ggtcaaaatt cccacggaac acattttgga attgttagtt gtagagcatg tgcagcattt 121 ttcagaagat ccgtcaattc aaaatgggcc cgtaaaggtt gcttgacaaa tttcaaagat 181 aagggaagtt gtttctgcaa accgtgtcga ctcagaaaat gtgtagaaat tggcatggat 241 gcttcaaagt ttcaatatga tcgtgatgcg atttccgcta taaaacatcc aaaaatattt 301 ccaagcgttt catattacgt gggacgaccg gaatttttga tgttctccga ttcgaatgtt 361 acctcgcaga agacatttat tgatgttcaa aatctagttt ttgaagtttc acgttatttg 421 gatcatggtt gtgaaacgcc gatttacgcg gaaaatcagc taaaaaagtt gactctcggc 481 tttaagctaa tgcaatttga ctatcaaaat gtaaagtttt tcgataaaat cgggaaagct 541 gaattcatcg atataatcga atactatttc ttaacagttg caaaatggat agcacatttt 601 gacgaatttc gaaaacttga tcaatccctt cagataaagc ttttacaagc aatttggcat 661 gtttggagca aaattcacaa atgtgcaagt acagcatttt atcgaaaatc aaatccaaat 721 gcaaaaccga cgcagaaaat tttacgaaat gtgtgtatgg atcggatgca cgtgcacaaa 781 ttggatacgt catggatgag tgattatcct acggagcacg tgacaagatt catgcttact 841 catcacgtgt acgacttcaa aattgtagaa agcctactta agttggaccc aacagacgta 901 gaattaactt ttatgtttgc ccagctgtgc tttgaatatg ctggaaaacg atttcaagga 961 gaaattctga aaatcactga tcattttcaa caagtcctat caaatgatct acaccactat 1021 tatatcaccg atcagagaag ggaacgttat ttccagcgcc tgacagatct aatgaaagtt 1081 aacaatttga tacagagatc catctgggaa acacgacctc atcgagaact tggtcgagtt 1141 tttgaaattt caaaactaga gttttcacat cctgaaatgt tcgatgattc tggattttgt 1201 tagcttccac ttaattcagt ttggaattca aattgtacat ttctaaataa atgtgtgtac 1261 ttaaaaaaaa aaaaaaaaa // LOCUS AY204201 1284 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk765a11 nuclear receptor NHR-114 mRNA, partial cds; alternatively spliced. ACCESSION AY204201 VERSION AY204201.1 GI:28396080 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1284) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1284) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1284 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="Y45G5AM.1" /clone="yk765a11" CDS <1..1231 /note="alternatively spliced" /codon_start=2 /product="nuclear receptor NHR-114" /protein_id="AAO39202.1" /db_xref="GI:28396081" /translation="SRDHVCLVCQDFASGYHYGVPSCVGCKTFFRRTIMKKQKYICQF EGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDC SSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKPRRCILQTLAEREKCANDLRLSEYL PIRSLHEALCSKALLNDTAFLEKWGQPSERHQIFDLRFVNHDDYHYWHERDWFLLTEY AKTFDVFEALDYQDKAELVRHAAITVPVLVQVWNSPDYGPDTIVFPDGAYFDRTPEPT RPAGLNRKKYQMLDLVLKPFRDLRLDATEFAAFKAVTFLNPDADISLPARKLVNNERV RITKQLYGYMAMKDDVDTAIERFARLVLMGTSMSKMACESKEAVWIADFFENIGFSAF ARQLFFGDTTSVVAHKL" BASE COUNT 361 a 330 c 287 g 306 t ORIGIN 1 gtctcgtgat cacgtttgtc tcgtttgtca agatttcgct tctggctacc attatggtgt 61 cccgtcatgt gtcggatgca agacattttt ccggcgaaca attatgaaga aacaaaagta 121 catttgccaa ttcgagggca attgtccagt tgataaaact atccgctgtg cctgccgata 181 ctgccgattc gagaaatgtt tgagcgtggg aatggaccga aacgccctcc aacaaaaccg 241 tgaccctatc ggatacacaa aacgtaccag gcgtccaaaa aaagagctga agactacctc 301 ggactgttca agtgacgaag gagcaagcac cccaccatca gtgtctccat tacagctatc 361 gcctccacca atctcgccac tccttttcca agctgcacca ctgaaacctc gtcgctgcat 421 cctacaaact cttgccgaac gcgaaaagtg tgcaaatgat ctccgactct ccgaatatct 481 tccaatccga tctctccacg aggctctatg ctcaaaggct ctgctgaacg acacggcttt 541 tttggaaaag tggggacagc cgagtgagag acatcagatc ttcgatctac gattcgtcaa 601 tcacgacgac taccactatt ggcacgagag agactggttc ttgttgacag agtatgccaa 661 aacattcgat gtttttgagg cgctcgatta tcaagataag gccgaacttg ttcgccatgc 721 cgcaataaca gtcccagtcc tggttcaagt ctggaactcc ccggactacg gaccagacac 781 aattgtattc ccagatggtg cctacttcga tcgtactcca gagccaaccc ggccagccgg 841 actcaacagg aaaaagtatc aaatgttgga tctcgtgctc aagccgttcc gtgatctacg 901 gctcgacgca accgaatttg cagcgttcaa agcggtaacg tttctgaatc cagacgctga 961 catctctcta ccggctcgca agcttgtgaa caacgaacga gtccgcatca ccaagcagtt 1021 atacggctac atggccatga aagacgacgt ggacacggca atcgaaagat tcgcacgatt 1081 ggttctgatg ggaacgtcca tgtcaaaaat ggcgtgcgaa tcgaaagagg ccgtgtggat 1141 tgcagacttt ttcgagaata tcggcttctc ggcgtttgcc cggcaactgt ttttcggtga 1201 tacgacgagc gttgttgctc acaaattgtg aagtgaataa atttaaattt aataaattaa 1261 tttccagaaa aaaaaaaaaa aaaa // LOCUS AY204200 1625 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk775f6 nuclear receptor NHR-114 mRNA, complete cds; alternatively spliced. ACCESSION AY204200 VERSION AY204200.1 GI:28396078 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1625) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1625) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1625 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="Y45G5AM.1" /clone="yk775f6" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 29..943 /note="alternatively spliced" /codon_start=1 /product="nuclear receptor NHR-114" /protein_id="AAO39201.1" /db_xref="GI:28396079" /translation="MTPQSSPSSSRDHVCLVCQDFASGYHYGVPSCVGCKTFFRRTIM KKQKYICQFEGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPK KELKTTSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKPRRCILQTLAEREKCA NDLRLSEYLPIRSLHEALCSKALLNDTAFLEKWGQPSERHQIFDLRFVNHDDYHYWHE RDWFLLTEYAKTFDVFEALDYQDKAELVRHAAITVPVLVQVWNSPDYGPDTIVFPDGA YFDRTPEPTRRTQQEKVSNVGSRAQAVP" BASE COUNT 468 a 388 c 334 g 435 t ORIGIN 1 ggtttaatta cccaagtttg aggtcaaaat gacacctcaa tcgtctccga gctcgtctcg 61 tgatcacgtt tgtctcgttt gtcaagattt cgcttctggc taccattatg gtgtcccgtc 121 atgtgtcgga tgcaagacat ttttccggcg aacaattatg aagaaacaaa agtacatttg 181 ccaattcgag ggcaattgtc cagttgataa aactatccgc tgtgcctgcc gatactgccg 241 attcgagaaa tgtttgagcg tgggaatgga ccgaaacgcc ctccaacaaa accgtgaccc 301 tatcggatac acaaaacgta ccaggcgtcc aaaaaaagag ctgaagacta cctcggactg 361 ttcaagtgac gaaggagcaa gcaccccacc atcagtgtct ccattacagc tatcgcctcc 421 accaatctcg ccactccttt tccaagctgc accactgaaa cctcgtcgct gcatcctaca 481 aactcttgcc gaacgcgaaa agtgtgcaaa tgatctccga ctctccgaat atcttccaat 541 ccgatctctc cacgaggctc tatgctcaaa ggctctgctg aacgacacgg cttttttgga 601 aaagtgggga cagccgagtg agagacatca gatcttcgat ctacgattcg tcaatcacga 661 cgactaccac tattggcacg agagagactg gttcttgttg acagagtatg ccaaaacatt 721 cgatgttttt gaggcgctcg attatcaaga taaggccgaa cttgttcgcc atgccgcaat 781 aacagtccca gtcctggttc aagtctggaa ctccccggac tacggaccag acacaattgt 841 attcccagat ggtgcctact tcgatcgtac tccagagcca acccgccgga ctcaacagga 901 aaaagtatca aatgttggat ctcgtgctca agccgttccg tgatctacag ctcgacgcaa 961 ccgaatttgc agcgttcaaa gcggtaacgt ttctgaatcc aggtccgggc ggaatctcaa 1021 taagagccaa actttcactt tgatgcgatt ccagacgctg acatctctct accggctcgc 1081 aagcttgtga acaacgaacg agtccgcatc accaagcagt tatacggcta catggccatg 1141 aaagacgacg tggacacggc aatcgaaagg ttggtgaaat cacgtttttc cttcctttga 1201 tgcattcatc tattactcgc ttgtcgatca aatcaaacat tgatagatca caatttgatg 1261 tgtcttgttg cggactagct aaattcgcac gattggttct gatgggaacg tccatgtcaa 1321 aaatggcgtg cgaatcgaaa gaggccgtgt ggattgcaga ctttttcgag aatatcggct 1381 tctcggcgtt tgcccggcaa ctgtttttcg gtgatacgac gagcgttgtt gctcacaaat 1441 tgtgaagtga ataaatttaa atttaataaa ttaatttcca gaaatattta cacgcttgaa 1501 aaaaaatctc aatgctaatc ctatttatat acgtttatta ttattttttt tttttggtat 1561 tttttttgca ataaagtttt aacttttttt taaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1621 aaaaa // LOCUS AY204199 1172 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk709d2 nuclear receptor NHR-113 mRNA, partial cds. ACCESSION AY204199 VERSION AY204199.1 GI:28396076 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1172) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1172) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1172 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="I" /map="ZK1025.9" /clone="yk709d2" CDS <1..1083 /codon_start=1 /product="nuclear receptor NHR-113" /protein_id="AAO39200.1" /db_xref="GI:28396077" /translation="KKKKKFLFHFVSTSGSAFAMDNKNDPCRICNDSLTSGFHFGTSC CIACAAFFRRTVKNQFTCNANNDCVISFEKKFTCRACRYNNCLKAGMRKDYIRKINSN YVPKQKCVNVDASRSIGTSSASSSSSESSPLVSPIIEKPIGKYSKILKRYPQELLQFY VKEVEKTIANRRKNSSKNILHAKSMNELMVITAHQSGSAMEACINCPGVSKLHQKDIR VLHKYFQFLNVWLDSVREYSMSDGAHYEIGVDRKLSEFIHQVRTTLGSSLANLKLNMY EYSAFKLFCIWNLKFHKTSTALKIVAQEHYEGVCSALRNYYETQTKMDDFEIAIRIGD ITLQIVTVSDIYHDFIKLLLNSGISI" BASE COUNT 393 a 213 c 224 g 342 t ORIGIN 1 aaaaaaaaaa aaaaattcct attccatttt gtgtccacta gtgggtctgc ttttgcgatg 61 gataataaaa acgacccctg ccgtatttgc aatgactcct taacttccgg ctttcacttc 121 ggaacctctt gctgcatagc ttgtgctgca ttcttccgaa ggaccgttaa gaatcagttc 181 acatgtaatg caaataatga ttgtgttatt tcttttgaaa agaaattcac ctgccgagct 241 tgtcgctaca acaattgcct caaagctgga atgaggaaag attatattcg aaaaatcaat 301 agcaattatg ttccgaaaca aaaatgtgtt aacgtggatg cttcaagatc cattggcaca 361 tctagtgcca gctccagctc ctccgaatcg agccctttgg tatctccaat aattgaaaag 421 ccaattggaa agtatagcaa aattttgaag agatatccac aggagttgct acagttttat 481 gtgaaagagg tggagaagac gatagccaac aggaggaaga atagttcgaa gaacattctc 541 catgctaaat caatgaatga gctcatggta atcactgctc atcaaagtgg atcagcaatg 601 gaagcatgca ttaactgccc tggagtttct aagttacatc aaaaagatat cagggtacta 661 cataagtact tccaattttt gaatgtttgg ttggattctg tcagggaata ttccatgtca 721 gatggggctc actatgaaat tggagttgac agaaaactct ctgaattcat tcaccaggtc 781 aggacaacat tgggatcttc cctggcaaat ttgaaattga acatgtatga atactctgct 841 ttcaagttgt tttgcatctg gaatctgaaa ttccacaaaa cctccactgc tctgaaaatt 901 gttgctcaag agcactatga aggagtttgc tccgcgctga gaaactatta tgagacacag 961 acaaaaatgg acgattttga aattgcaatt aggatagggg atattacttt gcaaattgtt 1021 actgtatcgg atatctatca cgacttcatc aagctattgc tcaattctgg aatatctatt 1081 tgacgttgtg acatttgttt tatattaaaa gacgttaaag ttccaaataa acatttgttt 1141 cgtaaaaaaa aaaaaaaaaa aaaaaaaaaa aa // LOCUS AY204198 3443 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk380c6 nuclear receptor (NHR-112) pseudogene mRNA, complete sequence. ACCESSION AY204198 VERSION AY204198.1 GI:28396075 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3443) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 3443) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..3443 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="Y70C5C.6" /clone="yk380c6" gene 1..3443 /gene="NHR-112" /note="nuclear receptor" /pseudo BASE COUNT 1100 a 589 c 600 g 1154 t ORIGIN 1 tttactttta actctttttt tttagtctaa aaagtcacct gtggaaaatt tctaaatttt 61 tttaaatctc agactctttt gtactagttt atggtattaa ttgttttttt ttttcgtttt 121 ttttcttcat attttaaatt agaatttgaa aaagtatttt tcaaaaaact tgactggaaa 181 ttcagaactg atttttattc aaatactttt aaagtaatgc taatttttgt ttttttgaat 241 actttccggg aattaaattt ttaactggaa attcaaattt tagggtttca aaaaatctgg 301 ccagaaatta aaattattat ttccaaaaag tttttgcctg tacattcaaa tttagattta 361 tcaaaaaaaa aaccattggc gggaaattcg attcttttca aaaaaaatgt atgaagttca 421 tatttaaaaa tttttcgaaa aaaatttttg tacgaaactc aacttttaat tttccagaac 481 atttcggctg gaaattcaat ttttttttct aaaattttcg cgaaattttc atttttattt 541 tattttaact ttctgcagaa tttcaaatta aacactgttt ccagaaggtt ttagcagaaa 601 gttaaaaaaa ataatttttc caaaatacta acaaaataaa attaaaattg ttcaatattt 661 ttgaacttca atatttcaaa atttcggcgg taaattcaat tttcaattat cagaaaattc 721 tgtattattt tgcaaaattc tagaaaattc taaaagtatc ctaaagtgtt tcagaatgtt 781 ctgaaatttt ttaaatgtcc atactcacac ttattttttg tcaattttgc acgccaccag 841 caacctcttg tcgtttttcc tgcaaaagta cctgcggtat tttttcacct ttttcataga 901 taaaaacggt ttaaaagtgc accacttttt tctaaaatta ctatgttcct ttttatattg 961 attgctttat ttgattatgt gtatgtgttc tattggtatt tcatttctta cacgattaac 1021 taatcgtatc aaaataaata aataaataaa tacatttttg aatgattaat ttcattcctc 1081 aatttcgtaa tattgcattg cacggtgacc attaaaacac aagtgcaact aaacaaataa 1141 cgacaaaaaa agcaccgaaa atgcactgac tcatcatgcc ccgacagacg acacgttggc 1201 aacgcatttg tagactttta aattggacgg ggagtcgtac attcatttga tcttttgttc 1261 tacatttttg cgggatgtaa atatttcgtg ttttgcgcgg tctttgtcat tttgcggctg 1321 cattgttcag agatcgttgc aaatatttct tatgtgattt tgtagaccga aaattaaaaa 1381 aaaaactgtt gctatagaac aattaattag gaagggcata cctaccgtat ttttactatt 1441 aagtatgaac tcattaccgc cgaaaccggg catttacaaa ttttttcgta aaaatctgaa 1501 atcagcgtcg gattcagcat cctaaaaatc ctatggaact acaatttcgg tcaaaaccat 1561 caaaaattgg gagaaaaatg gcttacaatt aaaaaatcga atttttttct tgtttcctcc 1621 gaatttttga actatctaga tgagattgaa gtaacatttt ttcttacgct gaatccgata 1681 taaatattag ttttccacaa aaaattcaga catgtcctaa aattctagaa cgaatgaggg 1741 atcccgcata ccggccggcc tttgccatca cagctcgagg agcttgtgca gtttgttgta 1801 aaatcaaagg cttggtgtta gcactgctta gtgcgattgg tgtaatttat caacgtccga 1861 cactttcgga gttccgcgcc acactataca gaggacgccg gctcctaaac ccaagccctg 1921 cgtttgtccc acaagtccct tgagataagc gggtgatatg tcctcgatca atgtcggctg 1981 cgcatttact ataagatctt taaagactcg ttgctcagaa ttatgctaac attggcaaat 2041 attccttgtt ttgctcaacg atctcttctc tgagatgcat ttgcaatcct aatccgatca 2101 actttcagag cacttctctc tcaaaatgtg caaaatctgc ggatcttcag aatctgagcc 2161 ccactttggc gggacttcat gtcggtgaga gacttttccc gtaagcccaa aaactagtca 2221 gaatttttca gagcctgcgc tgcatttttc cgcagattct atcactcgaa aaagctcggc 2281 ttaaaatgta catgtaaaac caggcagtca aatgctcatc cgtgccgaag ttgcaggatc 2341 cgaaagtgtt atgaagctgg gatgacgccg gagagtaggt tttgaagatt tatagttatg 2401 ctttagtttt ttaactactc gaatttcaga gatccaacta accagggaca agcatttgaa 2461 cagaactata aaactggaag gcccatgctc ctcgttagat gtaggattta aagcttaaaa 2521 gcggcccgaa gaatgtactt atttttagac tccgataact tcccgccaaa caccaaactt 2581 atattgtgtt ctatcaaact ggcacgagtt gaaaatgact agagaagaaa tgaacagtgg 2641 atctctcaat aattgcaata ttttcgaact cactagtttt gtgctaagag atcttgaatt 2701 gacgtggcgg atggttagca aggccttccc aactgtagaa gtacttgagg acagggatag 2761 agtaggtttg actttgaagt tcttcgctct aaaaactgga attccagcaa gctctgttac 2821 ggaactttgt gccaaaatta tggcagattg agccaatcct cgagtaccgg gagtgtgctg 2881 aaaagttcga taatctggag gaagaggatt atgaaaattt gctggttggg ttttatggtg 2941 gaacatttcc agaagggaag gaaatgtcta aatctgaaat tgttaggtaa accttcaaaa 3001 aatgtcggcc attaaatgcg aaaagtttcc agtaacttcc ggccatactg ggattactac 3061 tacacaaaaa tgattcttcc gatttcgtca atggggctcg aagagcttga atatatggct 3121 atcgtttggc tggcgttctt tgataatggt aaggaaaaaa tcggaaagtt atgaaggttc 3181 tgaaaatgat cggaacgttc tgaaaatcgc tagaggtgta aaaacaactt tgggattagc 3241 caacggattt tctggatggt tttataaatg tctaaaaaaa ttctgaaaag atctaggaac 3301 ttctggaaag acttgggaag ttccagaggc ttctggacac ttgtacaaat ttctggaaag 3361 tttacaactc atgtaaaaag ttcttaaaac ttttgaattt ctctgaaaat ttctggcatg 3421 cttagaaaaa aaaaaaaaaa aaa // LOCUS AY204197 1146 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk730g8 nuclear receptor (NHR-112) pseudogene mRNA, complete sequence. ACCESSION AY204197 VERSION AY204197.1 GI:28396074 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1146) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1146) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1146 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="Y70C5C.6" /clone="yk730g8" gene 1..1146 /gene="NHR-112" /note="nuclear receptor" /pseudo BASE COUNT 380 a 192 c 255 g 319 t ORIGIN 1 ggtttaatta cccaagtttg agagcacttc tctctcaaaa tgtgcaaaat ctgcggatct 61 tcagaatctg agccccactt tggcgggact tcatgtcgag cctgcgctgc atttttccgc 121 agattctatc actcgaaaaa gctcggctta aaatgatccg aaagtgttat gaagctggga 181 tgacgccgga gaagatccaa ctaaccaggg acaagcattt gaacagaact ataaaactgg 241 aaggcccatg ctcctcgtta gatactccga taacttcccg ccaaacacca aacttatatt 301 gtgttctatc aaactggcac gagttgaaaa tgactagaga agaaatgaac agtggatctc 361 tcaataattg caatattttc gaactcacta gttttgtgct aagagatctt gaattgacgt 421 ggcggatggt tagcaaggcc ttcccaactg tagaagtact tgaggacagg gatagacaag 481 ctctgttacg gaactttgtg ccaaaattat ggcagattga gccaatcctc gagtaccggg 541 agtgtgctga aaagttcgat aatctggagg aagaggatta tgaaaatttg ctggttgggt 601 tttatggtgg aacatttcca gaagggaagg aaatgtctaa atctgaaatt gttagtaact 661 tccggccata ctgggattac tactacacaa aaatgattct tccgatttcg tcaatggggc 721 tcgaagagct tgaatatatg gctatcgttt ggctggcgtt ctttgataat ggctactcaa 781 acatatctga caattgcctc gaaatgtgta gggatatcca gaaagtgata ctcaaggagt 841 tgcgaaacta tcaaatcgat aggaactttc atgaaaatcg ttttttcgtt gccttagagg 901 ctttgcaaat cattgaaaga ggagagaaga aattcatgga ggagatgttg gtgtgcgaga 961 tgaatcatat ccggatacat gatgatttca gaaagattat cagagaacca aaattgtagt 1021 cttgagaaca gtataataac agttgtaaat atgttgattt tgtatttgaa tttttgttgt 1081 cgcttttaaa tgaaaatgta ttaaaacgtg taaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1141 aaaaaa // LOCUS AY204196 1325 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk740d12 nuclear receptor NHR-110 mRNA, partial cds. ACCESSION AY204196 VERSION AY204196.1 GI:28396072 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1325) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1325) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1325 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="Y46H3D.5" /clone="yk740d12" CDS <1..1240 /codon_start=2 /product="nuclear receptor NHR-110" /protein_id="AAO39199.1" /db_xref="GI:28396073" /translation="TDPVSASELGAIKCQVCFLPGHGIHFGAYTCRACAAFFRIVSIS KKKCHFSPRPTHKCRNNSNCKPKIDGRWFCKTCRLTRCLSIGMSPENIQYDRDKFESI LKSSKNNRHLQIPNTVESQLCISPLVSFSNRREKSSKCIDISQIVKKAVAKLLNPAMI RNIDSTSNLEQLTSGFKNLQSGQKENIPKIDHITLAHQTQHFNSSMCSAAVWLGYSDR FKTYSDMQKIKVLQAIWCIWGRLEGIVMTAKMRIIGKCEKEQFFLTSDTLIVYDNFSS DLDYCSTYPFEEMKYFFIPREMFHEDVISELVKVQPDDVETTYLMSVVCLQLTGKRYG GLIQEEMEQFQDILSNDLHEYYINNKMPKYLLRIKQLMRVKEMFLRNLNIRMEKYKIA GVFNVFNRPISNLEFFTVPI" BASE COUNT 452 a 239 c 248 g 386 t ORIGIN 1 aactgacccg gtctcagctt ctgagcttgg tgctataaag tgtcaagtgt gcttcctacc 61 cggccatggc atccattttg gtgcatacac ctgtagagca tgcgctgcat ttttcaggat 121 tgtgagcatt tctaagaaga agtgtcactt ttcaccacga ccaacccaca aatgtcgaaa 181 taatagtaat tgcaaaccga aaatagatgg acgctggttt tgcaaaacgt gccggctaac 241 tagatgtttg agcattggaa tgtcccccga gaatattcaa tatgatcggg acaagttcga 301 atctatactt aaaagttcaa aaaataatcg tcatcttcag attccgaaca cagtggaatc 361 gcaactttgt attagtcctc ttgtttcgtt ttccaataga cgcgaaaaaa gttcaaaatg 421 catcgatatt tctcaaattg tcaagaaagc tgtagctaaa ctactgaacc ctgcaatgat 481 cagaaatatt gactcgacaa gtaacttgga gcaactgaca tcggggttta aaaatctcca 541 atcaggtcaa aaagagaaca tacctaaaat tgatcacatc accttggcac atcaaacaca 601 acattttaat agcagcatgt gtagcgctgc agtatggttg ggttactcag ataggtttaa 661 aacttatagt gacatgcaaa aaatcaaagt tctccaagca atatggtgta tttggggacg 721 tcttgaaggc atagtgatga cagcaaaaat gaggattata ggaaaatgtg agaaagagca 781 attttttttg acatctgata cacttattgt ctacgataat ttctcatctg atctagatta 841 ttgttctaca tacccattcg aagaaatgaa atactttttc attccccgtg aaatgttcca 901 cgaggatgtt atatccgagt tggtaaaggt acagccagat gatgttgaga ccacttattt 961 gatgtctgtt gtatgccttc agttaacagg caaacgatat ggcggcttaa ttcaagaaga 1021 aatggaacaa tttcaagaca ttttgtcaaa cgacctacat gaatattaca tcaataacaa 1081 gatgccaaaa tacctattgc gaatcaaaca gctgatgcga gtgaaggaaa tgtttttgag 1141 aaatttgaac attcgaatgg aaaagtacaa gattgcaggg gtcttcaatg ttttcaaccg 1201 tccaatttct aacttagagt ttttcaccgt tcctatctaa tatattttat ttttattgca 1261 atacatgtct gttaatacaa aagtatgaaa aattagtgga attatcaaaa aaaaaaaaaa 1321 aaaaa // LOCUS AY204194 2057 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk805b2 nuclear receptor (NHR-108) pseudogene mRNA, complete sequence. ACCESSION AY204194 VERSION AY204194.1 GI:28396069 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2057) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 2057) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..2057 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="F35E8.12" /clone="yk805b2" gene 1..2057 /gene="NHR-108" /note="nuclear receptor" /pseudo BASE COUNT 615 a 395 c 468 g 579 t ORIGIN 1 ttgtgaagag tcatgagagg tgtagcatag gtgggagtct tcggacgaca gtgaaatacc 61 accactttca tcgactcttt acttattcgg ttaaaagaga attggcttca cggccttttt 121 tcgaagcatt aagcggagcc attttatggc accgtgactc tcctcgaaga cagtgtcaag 181 cggggagttt gactggggcg gtacatctat caaatcgtaa cgtaggtgtc ctaaggcgag 241 ctcagagagg acggaaacct ctcgtagagc aaaagggcaa aagcttgctt gatcttgact 301 ttcagtacga gtacagaccg cgaaagcgtg gcctatcgat ccttttaatc ctgattgttt 361 caggtaagag gtgtcagaaa agttaccaca gggataactg gcttgtggca gccaagcgtc 421 catagcgacg ttgctttttg atccttcgat gtcggctctt cctatcattg cgaagcagaa 481 ttcgccaagc gttggattgt tcacccacta atagggaacg tgagctgggt ttagaccgtc 541 gtgagacagg ttagttttac cctactgttg acttgttatt gcgaaagtaa tcctgcttag 601 tacgagagga acagcgggtt caaacatttg gttcatagac ttgatcgaca gatcaatggt 661 ctgaagctac catttgagag attataactg aacgcctcta agttagaatc tcgccttgtc 721 aaggcgaaaa tttcttgctt cccggtgtcg ggaggcatct ctatctcgtg gcaacacgag 781 agcttatgcc ctatgtatgg ccttggcgtc gtagtgaatt ctgcgacgct tgccaacgcc 841 agatcactct ggttcaatgt cggggcgcta aatcacttgc atacgacttg gtctcttggt 901 caaggtgttg tattcagtag agcagtcctt ttatactgcg atctgttgag actatccttt 961 gattgagttt tttgtaattg cccgtgatgg ggcctcgatc aaaaggggaa aatcaatcga 1021 aatgttcgat ttgtcaagaa tctggagatg gttttcactt tggagcagaa gcttgcagac 1081 atcagatgca tgtgccgggc atgtcgactt accaaatgta tcgaagttgg aatgaaccct 1141 gtaggagttc ggcagaagcc tggtagtttc cggaaatcaa aggaactcat ctctcccagt 1201 tcatcaaatc atgacgagtt cagtcgaatg ccaatacttt caaaaatgaa attgaactat 1261 gaaaatatga gaaatgccag gaaagcattg cacaatgaag ttggagaaaa tgtatttgag 1321 gagaagattc caaaagaaat aaattataaa gaatcagttc agcagggaat gaaggattat 1381 acgctgatgc ctgaatgggt gtcctcttgt tttgatgagt ttcgaacgtt atccgctgat 1441 cagaaaaata tcttgttccg caactcctac attccatttt tcatgatgga aactgcattt 1501 ttaagtcata tcaacaatat gccggactct gtcattttcc catctggaga ctattgtgac 1561 atgaaaaact tggagcgata ctataattct acaaattttg aaaaaaaaat cagcacggaa 1621 gatattgaaa acttgttcaa gccgttctac gacaattaca agagatcttt gctcctccca 1681 atgatgaatc ttcaagttga catctatgaa tttctcacac tttttacact tctccactgg 1741 gatactggcc ttgttgagat caccgatgaa tgtctggaaa ttggcacaaa agtcaaagca 1801 gaagtattca aggagctgga tttctatttg acaaatgtga agaaagtcgc agagccatca 1861 gttagaatag ggacaattgt caacttactt ccagcagttc ataaaagcgt acggagaata 1921 caggatgaca tggagatgac taaagtcttt aatatttttt cggcgcccaa tgagtttttt 1981 gatcttgtta ctggcaattt ctgagaataa aagaaacaaa attcttaaaa aaaaaaaaaa 2041 aaaaaaaaaa aaaaaaa // LOCUS AY204193 1176 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk708e10 nuclear receptor NHR-108 mRNA, complete cds. ACCESSION AY204193 VERSION AY204193.1 GI:28396067 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1176) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1176) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1176 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="F35E8.12" /clone="yk708e10" CDS 78..1094 /codon_start=1 /product="nuclear receptor NHR-108" /protein_id="AAO39197.1" /db_xref="GI:28396068" /translation="MSKKSENQPCMVCGEISYSIRFGAVSCRACAEFFRRKIVSKARI PKRCNGACDLGKYHRKTCQSCRFQKCLKIGMLEKVVASRTPVNRRSENNQTILSGLEK AYDKLENSRDNVFDRKNKIPKYCNHQELDDMFEIDIKLISTHFIQFFESKSSLENNQN KVLSTHFIIRFSLLEVAFRAFGKPTYILPNNDIIDVSKLDKVYQHLETGEDERGKNSQ VILQRFWQMNEKTMKTEVFPVNLDQSEFLFLCALIYWDFGIENQSEKCLEECQRMRTQ VLKELTEYEKSNYPENELRVAQVIGILQALQKTLDVIQHSGYISNVYNLKGKQCPLYE ATNE" BASE COUNT 437 a 193 c 208 g 338 t ORIGIN 1 aaaaaaaaaa attctgcgtc tctatcctac cgatacacac ttcttaacta aattttaaat 61 ttcttttctg aaataaaatg tctaaaaaat ctgaaaatca gccgtgtatg gtgtgcggag 121 agatatctta tagtatccgg tttggggcag tttcatgtag ggcttgcgca gaatttttcc 181 gacgcaagat agtttcaaaa gctagaatac caaaacggtg caatggtgct tgtgatcttg 241 gaaaatatca ccgaaaaact tgtcaaagtt gtcgatttca aaagtgtttg aaaattggaa 301 tgttggaaaa agttgtagct tcccggacac cagtcaatag gagaagtgaa aacaatcaaa 361 ctatattgtc gggacttgaa aaagcatacg ataaattgga aaactccaga gacaatgttt 421 tcgatagaaa aaacaaaatc cccaagtact gcaatcacca ggaactggat gacatgttcg 481 aaattgacat aaaactaatt tccacgcatt tcattcaatt ttttgaatct aaatcttcat 541 tggaaaacaa tcaaaataag gttttatcta cccacttcat tattcgattt tcacttcttg 601 aagtagcttt tagagcattt gggaaaccta catacatttt accaaataat gatatcattg 661 acgtatccaa attagacaaa gtatatcaac atttggaaac aggtgaagat gagagaggga 721 agaactctca agtaattcta caaagattct ggcaaatgaa tgagaaaacc atgaaaactg 781 aagtgtttcc tgtaaacttg gatcaatctg aatttctatt tctatgtgca ctcatctact 841 gggattttgg aattgaaaat caatctgaaa agtgtttgga agagtgtcaa cggatgcgta 901 ctcaagtttt aaaagaactc actgagtatg aaaaatcaaa ctatccagaa aatgaactcc 961 gagttgctca agtgattggc atcttgcaag ctctgcaaaa aacattggac gtgattcaac 1021 acagcggata catttcaaat gtgtataatt taaaaggaaa acaatgccca ttgtatgaag 1081 ctacgaatga ataataactt tttgtcagaa tggtaataaa tacacccatc ttgcgttata 1141 caataaagtt cttgtgacgt caaaaaaaaa aaaaaa // LOCUS AY204192 1186 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk709g4 nuclear receptor NHR-107 mRNA, complete cds. ACCESSION AY204192 VERSION AY204192.1 GI:28396065 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1186) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1186) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1186 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="C33G8.11" /clone="yk709g4" CDS 46..1119 /codon_start=1 /product="nuclear receptor NHR-107" /protein_id="AAO39196.1" /db_xref="GI:28396066" /translation="MVNCMVCDASSAQYHFGAIACRACAAFFRRYVNSKKLTILCKCL SKKESQYPCRLCRMKKCKAVGMEASKVQGPRDVNNPFKIKMIEGSSSPESTLSSIEYG LQPRDSELIKLIIKNYKNLEMTREAIYNMTPSTTGTMQVNLYELSLEVKTDSKLMWKL CEDTFPEFNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSPSGAMCTSINE FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMALFGIIFWDGS YTNISDELSELCHSMRKIICRELSAHFNETCTTSSRFFETLDTLNIIEKAERKCQEEI ALCGFYNFEVDDDMKNMIMWEKY" BASE COUNT 446 a 182 c 235 g 323 t ORIGIN 1 aatttgaaaa tttcagattt cagataagtt tgaaaagcaa caaaaatggt gaattgtatg 61 gtttgtgatg cgtcatcggc tcagtatcat tttggagcaa ttgcatgcag agcatgtgct 121 gcgtttttca gaagatatgt aaactcaaaa aagctgacaa ttttgtgcaa atgcctatca 181 aagaaagaaa gccaataccc gtgtaggctg tgtcgcatga aaaagtgcaa ggcagtgggc 241 atggaagcat caaaagtaca aggacctcga gatgtcaata atccgtttaa aataaaaatg 301 attgaagggt catcgtctcc agagtctact ctttcaagta ttgagtacgg acttcaacct 361 agagactcgg aactcataaa gttaattatt aaaaactaca aaaatctcga aatgacaaga 421 gaagctatat acaacatgac acccagcaca actggaacaa tgcaagtgaa tctttacgaa 481 ttatcattgg aagtaaaaac ggattctaag ctgatgtgga aactatgcga ggatacattc 541 cctgagttta atcagctgtg caaaatggat aagagaattt tgttcaacaa cttttattcg 601 aaatggagta ttttggaggt aacaatgctt gcaacaaaat ataatgattc aaagaatttc 661 tattctccat ccggagcaat gtgtacatca attaacgaat tttatgtcaa caccgtgaga 721 gataattcag caataagtca agaggatata ataagggtat ttgaaccgta ctggaaatat 781 catttcgaac aagttattga cccgtttctt gcattgaaac tcaacgacat ggaaaacatg 841 gcactgtttg gaattatttt ttgggatgga agttatacga atatcagcga cgaattatca 901 gaactatgcc attctatgcg aaaaatcata tgtcgagagc tgagcgcaca ttttaatgag 961 acatgtacaa catcgagcag attctttgaa accttggaca ctctgaacat aattgagaag 1021 gcagaacgaa aatgtcaaga agaaattgct ttgtgcggat tttacaactt tgaagttgat 1081 gacgacatga aaaacatgat aatgtgggag aaatactgaa ataagaaaat atcatattcg 1141 gtgtgaataa aattttccgt atttaaaaaa aaaaaaaaaa aaaaaa // LOCUS AY204191 1188 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk705d9 nuclear receptor NHR-107 mRNA, complete cds. ACCESSION AY204191 VERSION AY204191.1 GI:28396063 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1188) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1188) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1188 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="C33G8.11" /clone="yk705d9" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 52..1125 /codon_start=1 /product="nuclear receptor NHR-107" /protein_id="AAO39195.1" /db_xref="GI:28396064" /translation="MVNCMVCDASSAQYHFGAIACRACAAFFRRYVNSKKLTILCKCL SKKESQCPCRLCRMKKCKAVGMEASKVQGPRDVNNPFKIKMIEGSSSPESTLSSIEYG LQPRDSELIKLIIKNYKNLEMTREAIYNMTPSTTGTMQVNLYELSLEVKTDSKLMWKL CEDTFPEFNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSPSGAMCTSINE FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMALFGIIFWDGS YTNISDELSELCHSMRKIICRELSAHFNETCTTSSRFFETLDTLNIIEKAERKCQEEI ALCGFYNFEVDDDMKNMIMWEKY" BASE COUNT 440 a 184 c 239 g 325 t ORIGIN 1 ggtttaatta cccaagtttg agatttcaga taagtttgaa aagcaacaaa aatggtgaat 61 tgtatggttt gtgatgcgtc atcggctcag tatcattttg gagcaattgc atgcagagca 121 tgtgctgcgt ttttcagaag atatgtaaac tcaaaaaagc tgacaatttt gtgcaaatgc 181 ctatcaaaga aagaaagcca atgcccgtgt aggctgtgtc gcatgaaaaa gtgcaaggca 241 gtgggcatgg aagcatcaaa agtacaagga cctcgagatg tcaataatcc gtttaaaata 301 aaaatgattg aagggtcatc gtctccagag tctactcttt caagtattga gtacggactt 361 caacctagag actcggaact cataaagtta attattaaaa actacaaaaa tctcgaaatg 421 acaagagaag ctatatacaa catgacaccc agcacaactg gaacaatgca agtgaatctt 481 tacgaattat cattggaagt aaaaacggat tctaagctga tgtggaaact atgcgaggat 541 acattccctg agtttaatca gctgtgcaaa atggataaga gaattttgtt caacaacttt 601 tattcgaaat ggagtatttt ggaggtaaca atgcttgcaa caaaatataa tgattcaaag 661 aatttctatt ctccatccgg agcaatgtgt acatcaatta acgaatttta tgtcaacacc 721 gtgagagata attcagcaat aagtcaagag gatataataa gggtatttga accgtactgg 781 aaatatcatt tcgaacaagt tattgacccg tttcttgcat tgaaactcaa cgacatggaa 841 aacatggcac tgtttggaat tattttttgg gatggaagtt atacgaatat cagcgacgaa 901 ttatcagaac tatgccattc tatgcgaaaa atcatatgtc gagagctgag cgcacatttt 961 aatgagacat gtacaacatc gagcagattc tttgaaacct tggacactct gaacataatt 1021 gagaaggcag aacgaaaatg tcaagaagaa attgctttgt gcggatttta caactttgaa 1081 gttgatgacg acatgaaaaa catgataatg tgggagaaat actgaaataa gaaaatatca 1141 tattcggtgt gaataaaatt ttccgtattt aaaaaaaaaa aaaaaaaa // LOCUS AY204190 1244 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk701e4 nuclear receptor NHR-106 mRNA, complete cds. ACCESSION AY204190 VERSION AY204190.1 GI:28396061 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1244) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1244) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1244 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="T01G6.4" /clone="yk701e4" CDS 56..1204 /codon_start=1 /product="nuclear receptor NHR-106" /protein_id="AAO39194.1" /db_xref="GI:28396062" /translation="MQTTCEICEVPAHGIHFGAITCRGCAAFFRRAVNTKTNRKSCKY SSNCTNFTGKFPQCKSCRMRKCIKMGMMPEKVKVMQPISQSLEIFVSRPNLILFTNNY DKTRNYIDVSNLITRGLEILKQGFPTPLGIGKTNLERMASGVEFSTAESKIVDVVTGK SVSMVWEFDFISTAKWLTRLQDFCTLPMRIQMQLLQTIWHVWSRMYKVVKSSELRKKH ADSSNLFQVLDQFHVNLGTTKLDVSWLTTYSYEEIKYFLYGIDDDIYLQSAITAASKL ELTDVELTYMAAQTCFQYAQNRFAGTEIAEVCAKFQEILANDLHTYYTKDHKRTSNYA GKLSQMLKCVQEIQKSIRTTRERTTIARTFDIYITDFSNPEMFIDSGC" BASE COUNT 415 a 231 c 246 g 352 t ORIGIN 1 gtgctccaat caattttctt actttttttt ttaaactttt ccttaaatac ttcctatgca 61 aactacctgt gaaatctgtg aggttccggc tcacgggatt cattttggag caatcacttg 121 ccgtgggtgc gctgcatttt ttagacgagc cgtcaataca aaaacaaata ggaaaagttg 181 taaatactca agtaattgca cgaatttcac tggaaaattc ccacaatgca aaagctgcag 241 aatgagaaaa tgtataaaaa tgggaatgat gccggaaaaa gtcaaagtga tgcaacctat 301 ttcccaatct ctggaaatat ttgtgagcag acccaattta atattattta caaacaatta 361 cgataaaact agaaattaca tagacgtcag caacttgatc acccgaggct tggaaatcct 421 taaacaggga tttccgacgc cacttgggat cgggaaaact aatctggaac gaatggcgtc 481 gggagttgag ttttctacgg ctgagagcaa aatagtagat gtggttacgg gcaagagtgt 541 ttcaatggtt tgggagttcg atttcatttc tactgcaaaa tggctgactc gtcttcaaga 601 tttttgtacg ttaccaatga gaattcagat gcaacttcta caaaccattt ggcacgtatg 661 gtcccgtatg tacaaggttg taaagtcttc agagctaaga aagaaacatg ctgacagctc 721 aaatcttttt caagttttgg atcaatttca tgtgaactta ggcaccacta aattggatgt 781 atcgtggctc acaacgtata gctatgagga aataaaatat tttctatacg gcattgacga 841 tgatatctac ctacagagtg caataactgc agcatcaaaa ttagaattaa cagatgttga 901 gctcacttat atggctgctc agacttgctt tcagtacgca cagaaccgat tcgctggcac 961 ggaaattgcc gaagtttgcg ccaagtttca agagatcctt gccaacgatc tgcacactta 1021 ttacacaaaa gatcataaga gaaccagtaa ctatgctggc aagctgtcgc agatgttgaa 1081 atgtgttcag gaaattcaga aatcaatcag aacaacacgc gagcgaacaa ctatagctcg 1141 aacgtttgat atttatatta ctgatttttc caaccccgag atgtttattg atagtggatg 1201 ttaaaaataa agttgttgtc caattaaaaa aaaaaaaaaa aaaa // LOCUS AY204189 1426 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk702a12 nuclear receptor NHR-105 mRNA, partial cds. ACCESSION AY204189 VERSION AY204189.1 GI:28396059 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1426) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1426) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1426 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="IV" /map="C06G3.1" /clone="yk702a12" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 30..1319 /codon_start=1 /product="nuclear receptor NHR-105" /protein_id="AAO39193.1" /db_xref="GI:28396060" /translation="MTFSDPMDPSIPIFQHHEEEEAGPSTTIKAEEEDGPCCLVCGRV ANTGHHYGVTACLGCKTFFRRVVLQKNSPKCKYKNHCRLEKSVNAKRLCRSCRYQKCL EVGMTEDALHPCRDVIGRRVRNNSSDSSPISSPPSIPTPLSICKLMNLSEGDHKLLQT ITDMDTDIRTRTAHILGEPANGNEQIHFYSPTPDYTNVIVNHGIGPSLKVDILLLREW VDRIPGFRELSERFQQHLMHRFCLRYTVIEHGLFTAQMPYHKNVWFLSDRTCLVSEFE NLPQEIKKHLTPKVINEQQLLASFTEMLIHEVADPLRRLKPDSVEVATVKTLMLLKPT CLREIDGDYLSTETDIKSVNDVRNRVINGLYSHYIKNGMDPEQLPIRVSEILNLTGGV EQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRDV" BASE COUNT 474 a 283 c 278 g 391 t ORIGIN 1 ggtttaatta cccaagtttg agacgaccta tgacattcag tgatccaatg gatccatcaa 61 tacccatatt tcaacatcat gaggaagaag aagccggtcc cagcacaaca ataaaagcgg 121 aggaggaaga tggtccatgt tgcttagttt gtggccgagt tgcaaatact ggacatcatt 181 acggagtgac tgcttgtctt ggatgtaaga cattcttcag aagagtcgta cttcagaaga 241 actcacccaa atgcaaatac aagaatcact gtcgattgga gaaaagcgta aacgcgaaga 301 ggttatgcag aagctgcaga tatcaaaaat gtctggaagt tggaatgacc gaagatgccc 361 tacatccctg ccgagatgtg attggtcgtc gagttcgtaa caattcaagt gattcttcac 421 ccatttcaag tcctccatca ataccaacac cattatcgat atgcaaactg atgaatttga 481 gcgaaggaga ccacaaactt ttgcagacaa tcaccgatat ggatactgac atacgaacac 541 gtactgctca tattcttgga gaaccggcga acggaaatga acagatccat ttttacagtc 601 cgaccccaga ctacacaaac gtaatagtga atcacggtat aggcccttct ctgaaagttg 661 atatattact actccgagaa tgggttgatc gaattcccgg atttcgagaa ctcagtgaac 721 gctttcagca acatttaatg catcgattct gtttgagata tactgtgatt gaacatggcc 781 tctttacagc tcaaatgcca tatcataaaa atgtttggtt cctctcagac cgaacatgcc 841 ttgtcagtga attcgagaat cttccacagg aaataaagaa gcatctcact ccgaaagtaa 901 taaacgagca acaattattg gcttcattca cagaaatgct cattcacgaa gtagctgatc 961 ctctaagaag attgaaacct gattctgttg aagttgctac tgtgaagacg ttaatgttgt 1021 tgaaaccaac ttgccttcga gaaattgatg gtgactacct ttctactgaa actgatatca 1081 aatctgtgaa cgatgtacga aaccgtgtaa taaatggact ctacagccat tatataaaaa 1141 acggaatgga tccagaacaa cttccaatca gagttagtga gattttaaac ctaactggtg 1201 gagtggagca gtgtgcagct cgagcccttg aggaaatgca ccctactcgt gtattcaact 1261 tatcatcttt tgatccatac agttctaatg ttatttttgg ttactataga gatgtttgaa 1321 acattttctt tctgacatat tattacgcta ttcaattgtg atgattgtga ttatagattt 1381 acaaaaataa acctattaat ttcgaaaaaa aaaaaaaaaa aaaaaa // LOCUS AY204188 1164 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk737b7 nuclear receptor NHR-104 mRNA, complete cds. ACCESSION AY204188 VERSION AY204188.1 GI:28396057 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1164) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1164) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1164 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="IV" /map="R11E3.5" /clone="yk737b7" CDS 3..1097 /codon_start=1 /product="nuclear receptor NHR-104" /protein_id="AAO39192.1" /db_xref="GI:28396058" /translation="MRFNPCDVCLSPGNGKHFGVDACRGCTAFFRRTIVNKRNYSCSE DDTCEIEKSEGLLCKKCRFEKCLKVGMKKESIQKHRDIYGRRNPENRALIISPSTSQL QVTIPITLLSSVKRNYAELENVREIVHRMDGFSMFLKPAPRGQTYKETYRLLLREFYL VSDWVSNCFPLFKELPNSQKDILLRNFYLTFYNLEAGFFACQHNKIDVWFLPNGNFID CQNLEAFYYDPHNQQPMTSADAARLFKGTCTECKRNVLEPMLRENVTQFEFLALAALL LFDTGLEDQSDDCMDLCRNVRTLIQREMIQYYSNKHLDEYPLRMADVISLIPRVQKAA QKMQSDMEIGHLFNTYAAEKSFFENCMGKG" BASE COUNT 391 a 198 c 232 g 343 t ORIGIN 1 aaatgcgttt caatccgtgt gatgtatgtc tttcgcctgg aaatggaaag cattttggtg 61 tcgatgcttg cagaggttgc acagcattct tccggcgaac aatagtcaac aagagaaact 121 acagttgtag tgaagatgac acttgtgaaa ttgaaaaatc agaagggcta ctttgcaaga 181 aatgccgatt tgaaaaatgt ttgaaagttg gaatgaaaaa agaatcgatt caaaagcatc 241 gtgacattta tggtcgccga aacccggaaa atcgagctct gataatttct ccgtcaactt 301 cacagcttca agtcacaatt cccattaccc tattatcaag tgttaagaga aattacgcag 361 aattggaaaa tgtaagagaa attgtacaca gaatggatgg tttcagtatg tttctgaagc 421 cagctccacg tggtcaaaca tataaagaaa cgtatcgttt gttgctccga gagttctatt 481 tagtgtctga ctgggtttcg aattgctttc cactttttaa agaactacca aattctcaga 541 aggacatact tctgcgaaac ttctacctaa ctttttacaa cttggaagct ggattctttg 601 cgtgtcagca taataaaata gacgtctggt ttttacccaa tggaaatttt attgattgtc 661 aaaatttgga agctttttac tatgatccac acaatcaaca accaatgaca tcggcagatg 721 ctgcaagact attcaaagga acatgtactg aatgtaagcg gaatgttctc gaaccaatgc 781 tcagagaaaa cgtgacacaa ttcgagtttc ttgctctagc agcattattg ttgtttgata 841 ccggtctcga agatcaatca gatgattgca tggatctttg ccggaatgtt cgaacactta 901 ttcaacggga aatgattcaa tactattcaa ataaacattt agacgagtat ccattgagaa 961 tggcagatgt catttcactg attcccaggg tacaaaaagc tgctcaaaaa atgcagagcg 1021 atatggaaat tggtcacttg tttaacactt acgctgctga aaaatcattt tttgagaatt 1081 gtatgggaaa aggttgaatc ttaaggagtt tgggagattt tattaataaa attattgaaa 1141 ctgtttaaaa aaaaaaaaaa aaaa // LOCUS AY204187 1407 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk722c6 nuclear receptor NHR-103 mRNA, complete cds. ACCESSION AY204187 VERSION AY204187.1 GI:28396055 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1407) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1407) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1407 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="F44C8.4" /clone="yk722c6" misc_RNA 1..22 /product="trans-spliced leader sequence SL-2" CDS 23..493 /codon_start=1 /product="nuclear receptor NHR-103" /protein_id="AAO39191.1" /db_xref="GI:28396056" /translation="MPAPLFLSGPCEICGQKTSGRHFGVLSCRSCAAFFRRSATWSRK KVQCVKGTCKIFEDGKFNCKQCRLKKCVEVGMDSKKFQTNRDLISSCSVPQSLCNFLG RPEFILCCEPDKASVFKTTIDVTYLVDMAKNLLEKVGKNEKTCEIKGECVASDI" BASE COUNT 460 a 255 c 312 g 380 t ORIGIN 1 ggttttaacc cagttactca agatgcccgc acctttattc ctctcgggtc cctgtgagat 61 ttgtggtcaa aaaacttctg gaagacactt tggagtgttg agttgtaggt cttgtgcagc 121 ttttttcagg agatcagcaa catggagccg gaaaaaagta caatgcgtga aagggacctg 181 taaaattttt gaggatggaa aattcaattg caaacagtgt cgacttaaaa agtgcgtaga 241 agtcggcatg gactctaaaa aattccaaac aaatcgggac ttgatatctt cctgctcagt 301 tcctcagtcc ctttgcaatt ttctaggacg ccccgagttc attttgtgct gcgagccaga 361 caaagcttca gttttcaaaa ctacaataga tgttacgtat ttagtagata tggcaaagaa 421 tctgctcgaa aaggtaggca aaaacgagaa aacatgtgaa attaaaggtg agtgtgtagc 481 gtccgacatc tagcggtcta gcggtcgttt ctgaaaaaaa tgggggtggg gcacctgtgt 541 cacacgtcgc ccgggcattt ttctatatat tcaggatcca tgtcaatgcc ctttgtctaa 601 cagccttgaa caactttcta ctacacttga aaatatgcga ggaatgaagt tgaacaaaga 661 aacacaaatt atcaagaagc ttggaaagaa cgaatctctc aaaacctggg aacaagggtt 721 tctccgagcg gtggagtggt tctccaattt ttcagaattt cgggaactgg atgagaactt 781 aaagatggaa attttaaaaa cttgctgggt ctcatggatc cggttggata agctatcgga 841 aactgctaac aaacgggtga acgcaactct cgacaactcg cttttgatgg ttggaaatga 901 ttcttgcatg catatgaatg attatgaagt tgatttatca tggtgtacga attattcgtt 961 ggagcaattg gccttttttt tcctcacccc ggacgacgag aagaactacc gtcagttgat 1021 acaagatatg gttgatctca acccaagtag cactgaaatc agctacatgc tcctgcagct 1081 ttctctggag cacgcgggaa aaagattgca gggagatata ctggaggcta ctgaaagttt 1141 agttcaagcc caggcaaatc aattgcatga ttattacgcg aagaaattga agttgtcaaa 1201 ttactcgtca agattgacac aattgatgaa gataactagg actttggagg cagacatgag 1261 acttcgaatt gaaaagaaga aagttgcaga tgtttttaat attttcaaaa ttcagttttc 1321 ccatccagaa atgtttgaaa cgacttaaga tcctctgcat aaaaattgaa agctaaaaaa 1381 aaaaaaaaaa aaaaaaaaaa aaaaaaa // LOCUS AY204186 1405 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk709h6 nuclear receptor NHR-102 mRNA, partial cds. ACCESSION AY204186 VERSION AY204186.1 GI:28396053 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1405) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1405) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1405 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="T06C12.6" /clone="yk709h6" CDS <1..1268 /codon_start=3 /product="nuclear receptor NHR-102" /protein_id="AAO39190.1" /db_xref="GI:28396054" /translation="FNYPSLRMSSTPSTSDTSSETSTSPASTAICKVCGLCAHGLHFG VLACRACAAFFRRTVVMERQKKYKCRGGEDNCAVSSTDRYQCRLCRFNKCVELGMTPE NVQWNRDSIPTSRKRKDDGPIVPANDLKAMAYPDGSLFGKPRTIMDISTLSAKIKNIL NEDKGGIDPATKKMNTLEIADYALRKWRNLQRSEEKMEKLDKLPVRQMFAIFEKQMIV VAEWLVQNPDFRLLSLEERYIYFKAMWNMWRRFERFEMSVKMFGNDVVEIRKFAISND QILTKEFTIDFSEITDVPNTTVQEMFRHSMSKMHHQVAKPLLELRPSSIETAYMLTQM SWQVAGKKMQGKVVEIGERVCDELANNLHSYYLKEEMRSNYAGRLVRLMSVVNSVKKI HMERSMTMELARIFEVFKVDFSEPDIFDC" BASE COUNT 462 a 253 c 314 g 376 t ORIGIN 1 ggtttaatta cccaagtttg agaatgtcct caacaccatc cacatcggac acctcatccg 61 aaacatctac atcgccggcg tccactgcaa tatgtaaagt atgcgggctc tgtgctcacg 121 ggcttcattt tggagtgctc gcctgtagag catgtgcggc gtttttcaga agaacagttg 181 ttatggaacg tcaaaagaaa tacaaatgcc gaggtggaga agataattgt gcagtcagca 241 gtacagatag ataccaatgc cgattatgtc gatttaacaa atgcgttgag ctcggtatga 301 caccggaaaa tgtccaatgg aatcgagatt caatcccaac aagcagaaaa cgaaaagatg 361 atgggccgat tgttccggcc aatgatctta aagccatggc gtacccagac ggctcacttt 421 tcggaaaacc tcgaactata atggatatat ctacactttc cgcgaaaatc aaaaacatac 481 tcaacgagga taagggcgga atcgatccgg cgacaaagaa aatgaatact ctagaaattg 541 ccgattatgc tctaagaaaa tggagaaatc tacagagatc ggaggaaaaa atggagaaac 601 ttgacaagct tccagttcgt caaatgttcg cgattttcga gaaacagatg attgtggtgg 661 cagagtggtt ggttcagaat ccagattttc gattgctaag tttggaagag agatatatct 721 atttcaaagc aatgtggaac atgtggcggc gattcgaacg attcgaaatg tccgtgaaaa 781 tgtttggcaa tgatgtcgtt gagatcagga aattcgcgat ctcaaacgac caaatcctca 841 cgaaagagtt tacaatagat ttttcggaga ttacggatgt gccaaacact actgtacaag 901 aaatgtttcg gcattcaatg tcaaaaatgc atcatcaagt cgcaaagccg ttgcttgaac 961 tcagaccgtc atctattgaa acggcgtaca tgctcactca gatgagctgg caagttgcag 1021 gtaagaaaat gcaaggaaaa gtcgtcgaaa tcggtgaacg agtttgtgat gagctggcaa 1081 ataatcttca cagctactat ctgaaagaag aaatgcgatc gaattatgca ggtcgcctgg 1141 ttcgcctgat gagcgttgtt aattctgtta aaaagattca catggaaaga agtatgacta 1201 tggagttggc cagaattttt gaagttttta aggtcgactt ttctgaaccg gacatttttg 1261 attgttagtt ttgttctagt cttttgtact ctttctagtt gtacttattg ttaaaattaa 1321 gctaaaatgc aaaatttcac ttaaaattgt acttattaat acggctgaaa atgaataaat 1381 gatgtattta aaaaaaaaaa aaaaa // LOCUS AY204185 1261 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk732c8 nuclear receptor NHR-101 mRNA, partial cds. ACCESSION AY204185 VERSION AY204185.1 GI:28396051 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1261) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1261) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1261 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="H12C20.6" /clone="yk732c8" CDS <1..1205 /codon_start=3 /product="nuclear receptor NHR-101" /protein_id="AAO39189.1" /db_xref="GI:28396052" /translation="VFFQKLIFKMQFEELCLVCNDLSSGYHYGVPSCNGCKTFFRRTI MKKQLFVCQHEKNCPVDKSIRCACRFCRFEKCIQVGMDKSALQASRDRIGYTKRTRKP KTKDVSFSSSSEMSPGSYFAESPGYAQKAFETYWSYVVSREKASNEMRLSDYLPKRSL KEALCSKSLLNDPIFLSKYALPSSKHTYTSLRFITQTDYHYWHERDWFVLTEYAKTFK IFEALSYAEQAELVRHSAITLPALNQVYNSPDHGLDTVVFPDGTYYDRTHEPTRPSGL NRKKYQVLDLVLKPFREIDINFNEFAAFKAITFLNPDADVSLQAKLAINEERISVTKQ LYDYMVRNDGIEKAIKRFSRLILIGTSMSKMACESKEAVWIADFFENIGYTSFAKELF FGDYDSDV" BASE COUNT 441 a 202 c 238 g 380 t ORIGIN 1 acgttttctt tcaaaaattg attttcaaaa tgcagttcga ggagctatgc ctggtatgta 61 atgatctatc aagtggatat cattatggag ttccatcttg taatggatgc aaaacgttct 121 tccgccgaac aataatgaaa aaacagctct tcgtctgtca acacgagaaa aattgtccag 181 ttgacaaaag tatccgatgt gcgtgccgtt tttgtcgatt cgaaaaatgt attcaagttg 241 gaatggataa atctgcacta caagcatcaa gagatcggat tggatacaca aaaagaacga 301 gaaaacctaa aacgaaagat gtatcattta gtagttcaag tgaaatgtct ccaggaagtt 361 attttgctga atctcctgga tatgctcaaa aagcatttga aacatattgg agctatgtag 421 tcagtagaga aaaagcatct aatgaaatgc gtctgtcaga ttatctacca aagagaagtt 481 tgaaagaagc cctgtgctca aaaagtttat taaatgatcc gatattttta agcaagtatg 541 ctcttccaag ctccaaacat acttatacat cattgaggtt tattacacaa actgactatc 601 attattggca cgagagagac tggtttgtgc tgacggaata tgcaaaaacg tttaaaattt 661 ttgaagccct ttcgtatgct gaacaggctg aattagtacg gcactctgca atcactttac 721 cagctttaaa ccaagtttac aactctccag accatgggct ggatactgtt gtatttccag 781 atggaacata ttatgataga acacatgaac caaccagacc ttctggattg aacaggaaaa 841 aatatcaggt tcttgattta gttttgaaac cattcagaga aattgatata aatttcaatg 901 aatttgctgc gttcaaagca atcacgtttt tgaatccaga cgctgatgtt tctctccaag 961 caaagttggc aataaatgag gaacgaatat ctgtaactaa acaactttat gactatatgg 1021 tgagaaacga tggaattgaa aaagctataa aaagatttag ccgtctaatt ctcattggaa 1081 cttcgatgtc gaaaatggct tgtgaatcga aagaagctgt ttggatcgct gatttctttg 1141 aaaatattgg atatactagt tttgcaaaag aacttttctt tggcgattat gattcagatg 1201 tataaattac ttgtgtgaag ttaatattta tgaattattt gaacaaaaaa aaaaaaaaaa 1261 a // LOCUS AY204184 1142 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk718h11 nuclear receptor NHR-100 mRNA, partial cds. ACCESSION AY204184 VERSION AY204184.1 GI:28396049 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1142) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1142) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1142 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="IV" /map="C28D4.1" /clone="yk718h11" CDS <1..1063 /codon_start=2 /product="nuclear receptor NHR-100" /protein_id="AAO39188.1" /db_xref="GI:28396050" /translation="LHVGMDANAVRSERTRKIKTEIDGDVKLEIKEEPADSEDADDEC PLDIKPDIAMAWQTKEIIAHMLYEEDRVLNWEEPYNKLRYYTMDSEVLQAIKDPSQVC ARTKINWNSHSRPLITIEALRFNWCRTFTLTIDWFETLPEYRALIDDDKELLVKFSLM PVGWLWYAYKSYEYRCDGIVFVDGSWFPRDKTIQQQVCPTCVLYYGRITESFMADVVN SMKELEMDETEMVLLKAICHLQPDYRLTRRGNDVISTGREKYKRALCEYIRMKSNGFM DASFRLCKLMQILPVVDILGKYEDESALLVSLGETEFNGSGGGLPYDIHASDSHFARK NRRKSDNQYHQQHVPLHIQ" BASE COUNT 405 a 174 c 235 g 328 t ORIGIN 1 tctacatgtt ggaatggatg ctaatgctgt tcgaagtgag aggacaagaa aaatcaaaac 61 agaaattgat ggagatgtta agttggaaat aaaagaagaa cctgcagatt cagaagatgc 121 tgatgatgaa tgtccattgg atattaaacc cgatattgct atggcatggc agacaaaaga 181 aataattgca catatgctgt atgaggaaga tcgagttctg aactgggagg aaccatataa 241 taagttacgg tactacacaa tggattcaga agtcttacag gccatcaaag acccatcaca 301 agtttgtgca cgaacaaaga taaattggaa cagtcattct cgtcctttaa tcactattga 361 agctctcaga tttaattggt gtcgaacatt tacactcaca attgattggt ttgaaacatt 421 accagaatat agggcgctca tcgatgatga caaagaactt ttggtaaaat tttcgttgat 481 gccggttggt tggttgtggt atgcatacaa atcatatgaa taccgttgtg atggaattgt 541 atttgtggat ggaagctggt tcccaagaga taaaactatt caacaacaag tttgtccgac 601 atgtgtactg tattatggtc gtataacgga atcatttatg gcagatgttg tgaattcaat 661 gaaagaatta gaaatggatg aaacagaaat ggttctacta aaagcaatat gtcatcttca 721 accggattat cgtctaacac gacgtggaaa tgacgtcatc tcaactggaa gagagaaata 781 caagagagca ctttgtgaat atattcgaat gaaatcaaat ggatttatgg atgcttcatt 841 tcgattatgt aaattgatgc aaattttacc tgttgtagat attctcggaa agtatgaaga 901 tgaaagtgca ctactggtct cactcggtga aacagaattc aatggctcag gaggtggact 961 tccatatgac attcatgcaa gcgattctca ttttgcaagg aaaaatcgac gaaaatctga 1021 taatcaatat catcaacaac atgttccgct gcacattcaa tgatctcaat tgataatgta 1081 tatttttgtg tgatatatct acattataaa acctgtgatc ttcaaaaaaa aaaaaaaaaa 1141 aa // LOCUS AY204183 1602 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk705f7 nuclear receptor NHR-95 mRNA, partial cds. ACCESSION AY204183 VERSION AY204183.1 GI:28396047 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1602) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1602) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1602 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="I" /map="Y39B6B.17" /clone="yk705f7" CDS <1..1222 /codon_start=2 /product="nuclear receptor NHR-95" /protein_id="AAO39187.1" /db_xref="GI:28396048" /translation="LFFLCFYMKIAKISHILPQKCEICKIQKCHGNHFGVNSCRACAA FFRRTVNSKWSRMRCLGGSCNQISFLCKPCRLQQCFNGGMMTNNFQYNRDVICPMDPQ PTVSIPKSLEIYLGKPYFVMLSEKNSEKTEIDLHRLLGEASKILSQGSASPSFCAGNQ LKKLSLGLPNQIIAPRFKMAEKVAKAELVANWEYYVKKVAAWLAHFDDFRRLDVDLQM KLLQSIWHIWSRLEKLSATAKYRKTAQSYKKTDVVLQGDIVVDVEHVYMDTRWLSNFP LEQFRRFMIHSSCDQYDVTQALYDLSPTDIELTYMLAQLCFQYAGNRYQGRILEVCDR FLTVLSNDLHDYYIKDLGMLRYAGRLAKMMQVNNSIQENIRKGRERMQLIRCFGVLKL EFSHPEMFLDSGFH" BASE COUNT 501 a 294 c 316 g 491 t ORIGIN 1 tttatttttc ttgtgttttt acatgaaaat cgctaaaata tcgcatattt taccccaaaa 61 atgcgaaatc tgcaaaattc aaaaatgtca tggaaatcac ttcggggtga atagctgcag 121 agcgtgcgcc gcattttttc ggagaaccgt gaattctaag tggagccgca tgagatgcct 181 cggagggagc tgtaatcaaa tttcatttct ctgcaagccg tgtcggcttc aacaatgttt 241 taatggtgga atgatgacaa ataatttcca atacaaccgt gacgtcatct gtcccatgga 301 cccccaacct acagtatcta taccaaaatc actagaaata tatctaggaa agccatattt 361 tgtaatgtta agtgaaaaaa attcggaaaa aacggaaatc gatttgcacc gcctgctggg 421 agaagcctca aaaatcctga gccaaggctc cgcgagcccg agtttttgtg cagggaatca 481 gcttaaaaag cttagtttag gccttccaaa tcagataatt gcaccgagat tcaaaatggc 541 tgagaaagtg gcaaaagcgg aactcgttgc caactgggag tattatgtga aaaaagttgc 601 cgcgtggctt gcacattttg acgatttccg gagattggat gtagatttac agatgaagct 661 tctccaatct atatggcata tttggagccg tcttgaaaaa ttatcagcaa ctgctaaata 721 ccgaaaaact gctcaaagct ataagaaaac cgatgttgtg cttcagggcg acatcgttgt 781 ggacgtagaa catgtatata tggataccag gtggctgagc aattttccgc tggagcagtt 841 tagaagattc atgatccact cttcatgtga ccaatatgac gtcacccagg cattgtacga 901 cttatcacct actgatattg agttaaccta tatgctggct cagttgtgct tccaatatgc 961 aggaaatcga tatcagggcc ggattttgga agtttgcgat cgatttttga cggttttatc 1021 gaatgatcta catgactatt atataaagga tttggggatg ttgagatatg caggaagatt 1081 ggcaaaaatg atgcaagtca ataattcgat tcaggaaaat attcgaaaag gacgagaacg 1141 catgcaactt atacgctgtt ttggagtact gaaattggaa ttctcacacc cagaaatgtt 1201 cctggattct gggtttcact aggaatgaaa tttttgtgtt aataatttgt gaataaaaca 1261 attaatattt tgtttgaaac tattattgat tgaaaaatcc aatttttcaa caaaattttt 1321 ttttggattt tttttcaaat ttttttaaag ttgcaaaaac tcaatttttt tttcctcgaa 1381 tattttacag aaaaatgtaa attcttgtat tttcaattat ccaagagcac acaccttcca 1441 gtccccatga gaattgaaag ctaattatgg ggagaagctt cttccccctc cccctctcag 1501 tcagcacctc ctagtgccaa ttttctcagt tttcttggca gttttcgtat tttgcttggt 1561 tttttgtaat aaaactcctc atgacaaaaa aaaaaaaaaa aa // LOCUS AY204182 1285 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk711d2 nuclear receptor NHR-94 mRNA, complete cds. ACCESSION AY204182 VERSION AY204182.1 GI:28396045 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1285) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1285) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1285 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="C12D5.8" /clone="yk711d2" CDS 130..1146 /codon_start=1 /product="nuclear receptor NHR-94" /protein_id="AAO39186.1" /db_xref="GI:28396046" /translation="MFCKICEVSSSELHFGIVSCRSCAAFFRRYVNSPKQLKKCNCEA ERAPCRYCRMKMCVKNGMMITKVQQKRDHNLPRAGRNFIETAQIALRNNDRTLNALSN YRILAKEREVVHKSSSSEQINYFEYTSIAIVDSRILWKKLEKTFLELQDLNDLDKLNL FSNFYPKWTFFESAIFAVEKKSDVHTFFAPNGKPAKQISKFYKDCMIGKSMKDIDVYR IFEPYWKSYYVHVAYPLFELKFDQMELMALLALMLLDPGYTNISEKCSEMCHRMRKVI QRELRGYYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQADEEFRRMVL VRKI" BASE COUNT 419 a 199 c 270 g 397 t ORIGIN 1 gaattgcagt ggagcgcagt tgttgattac cttgttgaac agtcatttgc gaaaacttcc 61 taatcactac ctcatcagac attccatgag ttgttgaatt tgccaattat tggatgcaca 121 aagcataaca tgttttgcaa aatttgtgag gtgtcgtctt cagagcttca ttttggaatc 181 gtttcttgca gatcgtgtgc ggcgtttttc cgaagatatg taaactctcc aaagcagctg 241 aaaaaatgca attgtgaagc ggagcgggct ccgtgcagat attgtaggat gaagatgtgt 301 gtgaaaaatg gaatgatgat cacaaaagtt caacaaaaac gcgaccacaa tctcccgcga 361 gctggcagaa attttattga gacggcacaa attgctcttc gcaacaatga tcgaactctc 421 aacgcactga gtaattaccg aattcttgcc aaggaaagag aagttgttca taaatcttcg 481 agttcggagc agattaacta tttcgagtat accagtattg caattgtgga ttctcgaatt 541 ttatggaaaa agttggagaa aacattccta gagttgcagg accttaatga tctggacaag 601 ttgaatttat tctcaaactt ttatccaaag tggacatttt ttgagtcggc tatttttgct 661 gttgagaaaa aatcggatgt tcacacattt ttcgcgccga atggaaaacc agcaaaacaa 721 atttcgaaat tttataaaga ctgcatgatt gggaaaagta tgaaggatat tgatgtttat 781 cgcatatttg aaccgtattg gaagtcgtac tatgtccacg tggcatatcc attgttcgaa 841 ttgaaatttg atcaaatgga attaatggct ctgcttgcac tgatgttatt ggatccagga 901 tacacaaata tatcagaaaa atgctctgaa atgtgtcatc gaatgagaaa agttattcaa 961 agagagttga gaggatatta tttggagaat aataaaccta cagatcgaat gttgaaagtt 1021 tttgaggcat tgcttttaat ggagaaaaca gatcgctggc ttcaagaaga agttcaaatg 1081 tgcgagatgt acaatgttca agctgatgaa gagttccgtc gaatggtgtt ggttcggaaa 1141 atttaagtgt ttttactgaa aacttcgcac atattttggc tctctcactg ttatttttaa 1201 atatgtacta tttttatttt ttttgaccat aaaaatggca atgatgtttt gcaacagaga 1261 atacaattta aaaaaaaaaa aaaaa // LOCUS AY204181 1347 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone pCG103a nuclear receptor NHR-85 mRNA, complete cds. ACCESSION AY204181 VERSION AY204181.1 GI:28396043 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1347) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1347) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1347 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="I" /map="W05B5.3" /clone="pCG103a" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 277..1287 /codon_start=1 /product="nuclear receptor NHR-85" /protein_id="AAO39185.1" /db_xref="GI:28396044" /translation="MSRDAVRFGRVPKREKARMFEEMQKTNVQSQRDQIAIQYENLTE VMHKINQAFGTLQATLEKCTGPIYTDRCPITSNFIVIPLKAAIDFANSIPAFLSITQT QRVHLLQNSVFDVMLLASASASTSQHFPPGGLTYDQSSANPIIPQAIQSISARIRQLP PQTVPILTAIAVCQADLLPESQQPMLLAERLWCVLGKLGGIQSLATAPSLLADVRTLR QWHSDRLRQMSQISQHFSQNLLIAPVAAAAPVLLPPAFLSPPASATSTSSSSVKSEFI ERHPSIASLLERPRRISSSGAQEPLNLSLPHVRHQVKRDVDSDEQLEEMKVSPVPTTL SE" BASE COUNT 372 a 345 c 292 g 338 t ORIGIN 1 ggtttaatta cccaagtttg aggcagtaaa tcactagcca aggacgagaa cgcctccaca 61 tcagctggca caattctgtg tcaagtgtgt tcggacaagg ccagcggttt tcattatggt 121 gtttttgcgt gtgaaggatg caagggtttc ttccgtcgtt ccatccagca aaagatcacc 181 tacagagcgt gcacacgggc cgaagactgc ctgatccttc gtaacaaccg taacaggtgt 241 cagtgctgca gactgaagaa atgcctagca gttggaatgt ctagggatgc cgtccgattt 301 ggcagagtgc caaaacgtga gaaagcacga atgtttgagg aaatgcaaaa gacaaatgtt 361 caatcacaaa gagatcaaat tgcaattcaa tatgagaatt tgacagaggt catgcacaaa 421 atcaatcaag cttttggaac tttgcaagca acgctcgaaa agtgcacggg accaatctac 481 acagacaggt gtcctattac aagcaatttt attgtaattc cgttgaaagc cgccatcgac 541 tttgccaact ctattccagc gtttttatcg attactcaga cacagagagt acacttgtta 601 cagaacagcg tatttgatgt gatgcttctt gcctcggcct ccgcctcaac atcccaacac 661 ttcccaccag gaggcttaac ctacgaccag tcatccgcca acccaattat cccccaggca 721 attcaatcga tatccgccag aattcgacaa cttccaccac aaactgtccc gattctcaca 781 gcgattgcag tttgccaggc ggatttgttg ccggaaagtc agcagccaat gctactagct 841 gaacgtcttt ggtgtgtact tggaaagctc ggaggtatcc aatcattggc aactgcacca 901 tctctgttgg ctgatgttcg tactttgaga cagtggcata gtgatcgact tcggcagatg 961 tctcaaattt ctcagcactt ctcgcaaaat ctcctgattg ctccagtagc tgctgcagca 1021 cccgtacttc ttccaccggc attcttgtcc ccacccgcat cggcgacatc aacgtcatca 1081 tcatcagtaa aatcggaatt catcgaacgt catccatcga tcgcctcact tttggagaga 1141 ccacgtcgaa tcagcagttc tggagcacaa gagcctctga atttgtcact tcctcacgta 1201 cgtcatcaag tgaaaagaga cgtggattct gatgagcaat tagaggagat gaaggtatcg 1261 cctgtgccaa cgacactctc cgaataatca gtgatgatct ggtttcacga tccaaaagca 1321 tcgttgagca actattcgtt cgaactc // LOCUS AY204180 1648 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone pCG103b nuclear receptor NHR-85 mRNA, complete cds. ACCESSION AY204180 VERSION AY204180.1 GI:28396041 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1648) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1648) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1648 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="I" /map="W05B5.3" /clone="pCG103b" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 44..1588 /codon_start=1 /product="nuclear receptor NHR-85" /protein_id="AAO39184.1" /db_xref="GI:28396042" /translation="MDLSTSGSLPCHLPLSLLTNLQTPPIDTSFSSPPATSSSSLLSP SPSSAFRPVVPKSLMNPQPAMDTFYMSAIQSLVVSTTNDDQYSEHGALEGSKSLAKDE NASTSAGTILCQVCSDKASGFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILR NNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKREKARMFEEMQKTNVQSQRDQIAIQYE NLTEVMHKINQAFGTLQATLEKCTGPIYTDRCPITSNFIVIPLKAAIDFANSIPAFLS ITQTQRVHLLQNSVFDVMLLASASASTSQHFPPGGLTYDQSSANPIIPQAIQSISARI RQLPPQTVPILTAIAVCQADLLPESQQPMLLAERLWCVLGKLGGIQSLATAPSLLADV RTLRQWHSDRLRQMSQISQHFSQNLLIAPVAAAAPVLLPPAFLSPPASATSTSSSSVK SEFIERHPSIASLLERPRRISSSGAQEPLNLSLPHVRHQVKRDVDSDEQLEEMKVSPV PTTLSE" BASE COUNT 454 a 447 c 336 g 411 t ORIGIN 1 ggtttaatta cccaagtttg agaataccta ttccttcatc atcatggacc tctccacaag 61 cggaagtcta ccatgtcatc tcccactctc cctgctcacc aacctacaaa ctccaccaat 121 tgacacctca ttctcctcac cacctgccac gtcatcatca tctctactga gcccatcacc 181 atcatctgca ttccgtccgg tggtcccaaa aagtttgatg aatccacaac cggcgatgga 241 cacattctac atgtcggcta tccagtcact ggtggtctca actacaaatg acgatcaata 301 cagtgaacat ggagcacttg aaggcagtaa atcactagcc aaggacgaga acgcctccac 361 atcagctggc acaattctgt gtcaagtgtg ttcggacaag gccagcggtt ttcattatgg 421 tgtttttgcg tgtgaaggat gcaagggttt cttccgtcgt tccatccagc aaaagatcac 481 ctacagagcg tgcacacggg ccgaagactg cctgatcctt cgtaacaacc gtaacaggtg 541 tcagtgctgc agactgaaga aatgcctagc agttggaatg tctagggatg ccgtccgatt 601 tggcagagtg ccaaaacgtg agaaagcacg aatgtttgag gaaatgcaaa agacaaatgt 661 tcaatcacaa agagatcaaa ttgcaattca atatgagaat ttgacagagg tcatgcacaa 721 aatcaatcaa gcttttggaa ctttgcaagc aacgctcgaa aagtgcacgg gaccaatcta 781 cacagacagg tgtcctatta caagcaattt tattgtaatt ccgttgaaag ccgccatcga 841 ctttgccaac tctattccag cgtttttatc gattactcag acacagagag tacacttgtt 901 acagaacagc gtatttgatg tgatgcttct tgcctcggcc tccgcctcaa catcccaaca 961 cttcccacca ggaggcttaa cctacgacca gtcatccgcc aacccaatta tcccccaggc 1021 aattcaatcg atatccgcca gaattcgaca acttccacca caaactgtcc cgattctcac 1081 agcgattgca gtttgccagg cggatttgtt gccggaaagt cagcagccaa tgctactagc 1141 tgaacgtctt tggtgtgtac ttggaaagct cggaggtatc caatcattgg caactgcacc 1201 atctctgttg gctgatgttc gtactttgag acagtggcat agtgatcgac ttcggcagat 1261 gtctcaaatt tctcagcact tctcgcaaaa tctcctgatt gctccagtag ctgctgcagc 1321 acccgtactt cttccaccgg cattcttgtc cccacccgca tcggcgacat caacgtcatc 1381 atcatcagta aaatcggaat tcatcgaacg tcatccatcg atcgcctcac ttttggagag 1441 accacgtcga atcagcagtt ctggagcaca agagcctctg aatttgtcac ttcctcacgt 1501 acgtcatcaa gtgaaaagag acgtggattc tgatgagcaa ttagaggaga tgaaggtatc 1561 gcctgtgcca acgacactct ccgaataatc agtgatgatc tggtttcacg atccaaaagc 1621 atcgttgagc aactattcgt tcgaactc // LOCUS AY204179 1548 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk718h5 nuclear receptor NHR-80 mRNA, complete cds. ACCESSION AY204179 VERSION AY204179.1 GI:28396039 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1548) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1548) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1548 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="III" /map="H10E21.3" /clone="yk718h5" CDS 45..1505 /codon_start=1 /product="nuclear receptor NHR-80" /protein_id="AAO39183.1" /db_xref="GI:28396040" /translation="MTAEASSSSTRCLICSAQATGFHFEAQSCSACAAFFRRTVALTK SFKCITGRDDCNVHYSMHQICRSCRHKKCLSNGMKPGGVQPKKPNIETGRAFFTKSGL KRNKKFANVSPQTADEQKLVVEGVKVPKIEVQEPNSLEDLEQDNEFVIKTPTPRKISS STSFSASTTTNYSTPGPSPMAPCSAGPDVLTLFIREEMKLGERRRLLFSERAVGTLLG QNKHCPYKKEDIKPLVFHDFRLTIKTHIMLVYEWLQTWPELQELDDFDRMSLLRKAVL IHFLLDPSFLSYQIGEPDKLIMQNGGFISTADHHGVGWEDETDISGENKRKYYVPIMK QITDEIMPAMEAMKITFEEFVALKALACFQGGFENVSEAKRHLITQQVNRIMTSLHTH YLENSEEKIAERFGTIVLMLSNIFTAGNDFVQNHREIDIFHIWDLDKLVLQLLNLDKI METEARETAEKRAMRNGINVVNNNNDVLLGQAKLEK" BASE COUNT 484 a 330 c 368 g 366 t ORIGIN 1 ttggtgaact tttataaaaa ttgacttttt attgatttgt atacatgacg gcggaagctt 61 cttccagctc cacgcgatgt ctaatttgtt cagcacaagc cactggattt cactttgaag 121 ctcagtcctg ctcagcttgt gctgcatttt tccggcggac cgttgcactg acaaaaagtt 181 tcaagtgcat cacaggaagg gatgactgca atgttcatta tagtatgcac caaatctgca 241 gaagctgccg tcacaaaaag tgcctgagca atgggatgaa gcccggtgga gttcaaccca 301 aaaagccaaa cattgaaacc ggaagagcat ttttcacaaa atcagggctc aagagaaata 361 agaaattcgc gaatgtgtcc ccgcagacgg ctgacgagca gaagctcgtg gtggaggggg 421 ttaaggttcc taaaattgag gttcaggagc caaatagctt ggaggacttg gaacaggata 481 atgaatttgt gataaaaacc cctacacctc ggaaaatctc atcgtccacc tccttcagcg 541 cctcaacaac tacaaactac agtactcccg gaccatctcc gatggctccc tgctcagcgg 601 gcccggatgt gctcaccctg ttcatacggg aagagatgaa gctcggtgag agaaggaggc 661 tattgttcag tgaacgagca gtagggactc tattgggaca gaataagcat tgtccctaca 721 aaaaagagga cataaaaccc ctggtattcc acgactttcg tctaaccata aaaacacaca 781 taatgctagt ctacgagtgg ctccaaacct ggcccgagct ccaggagctc gacgacttcg 841 accgaatgtc actgctccgg aaagctgtat taatacattt cctacttgat ccatccttct 901 tatcatatca aatcggtgaa cctgataagc tgataatgca gaacgggggc ttcatatcaa 961 cagcggacca tcatggagtt ggctgggagg atgagacgga tatcagtggg gagaataaga 1021 gaaagtacta tgttccaatt atgaaacaaa tcaccgacga gatcatgcct gcgatggaag 1081 ctatgaagat cacttttgag gaatttgtgg cgctgaaggc gctggcgtgc tttcaagggg 1141 gtttcgaaaa cgtgtcagag gcgaaacgtc acctaatcac ccaacaagtt aacaggataa 1201 tgacgtcact acacacccat tatcttgaaa attccgaaga aaaaatcgcg gagaggtttg 1261 gaaccattgt gctcatgctg agcaatatat ttactgccgg caatgatttt gtgcaaaatc 1321 acagagaaat cgatattttc cacatttggg atctggacaa gctggtgctc cagctgctca 1381 acctcgacaa aattatggag acagaagcca gggagactgc cgagaaacgg gcgatgcgga 1441 atgggattaa tgttgttaat aataataatg atgtgctttt gggtcaggca aagcttgaaa 1501 aatgagaata aatgaatttt tgggcttaaa aaaaaaaaaa aaaaaaaa // LOCUS AY204178 1207 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone pCG102 nuclear receptor NHR-69 mRNA, complete cds. ACCESSION AY204178 VERSION AY204178.1 GI:28396037 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1207) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1207) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1207 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="I" /map="T23H4.2" /clone="pCG102" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 32..1153 /codon_start=1 /product="nuclear receptor NHR-69" /protein_id="AAO39182.1" /db_xref="GI:28396038" /translation="MVEEICHICNDKSTGKHYGAISCDGCKGFFRRSIRKRYHYQCRF EQNCDVTKNKRNACRACRLQKCVKAGMKSNAIQNERDAIGKRKKTTGAEKEDLIDQLV AAETLCQQLRSSVIKNTSSLAPYDCGKVKWNYEDARAATLDDIGKSIHQQLVLFIEWA KSLPQFSFLAQADQAALLKGGAASIIVLGVAYRSICLTVENTICLANDTLLPKEHATQ VGDINCVVGRIIDEIVNPMRRLNMDLIEYVALKAILFFNPVVREINDQSPVENARYAF LRSLQRRCTDKALENMEDESMDCRSGKLLLLLPSLQAIAQQLVEDVQLARLFGLVNVD SLMEELILNDMKPSDPQILQTSLASPVNSSVKAEVELEE" BASE COUNT 402 a 205 c 261 g 339 t ORIGIN 1 ggtttaatta cccaagtttg aggcaaaaag tatggtcgaa gaaatatgtc atatttgcaa 61 cgacaaatca actggtaaac actacggggc aatcagttgt gatggatgta aaggattctt 121 tcgacgaagt attcgcaaac gatatcatta tcaatgcaga tttgaacaaa attgtgatgt 181 taccaaaaat aaacggaacg catgtcgagc atgtagactt caaaaatgtg taaaagcggg 241 aatgaagagt aatgcaattc aaaatgaacg ggatgcaatt ggaaaacgga aaaagactac 301 gggagctgaa aaagaagatt tgatagatca acttgttgcc gcagaaacat tatgtcagca 361 attaaggtcc agtgtaatca agaatacatc ttcacttgca ccatacgact gtggaaaagt 421 taaatggaat tatgaagatg cgagagctgc cacattggat gatattggaa aatcgattca 481 tcaacaattg gttcttttta tcgaatgggc gaagtcatta cctcaattct cgtttttggc 541 tcaagcagat caggcagctc ttctcaaagg cggtgccgcg tcaataattg tacttggagt 601 agcatatcga tcgatttgtc tgacagttga aaatacaatt tgccttgcaa atgacacact 661 tcttccaaaa gaacatgcaa cacaagtggg agatatcaat tgtgtcgtcg gacgaattat 721 tgatgaaatt gtgaatccaa tgaggaggtt aaatatggat ttaattgaat atgttgcact 781 gaaagctatt ctgtttttca atccagtcgt cagagaaatc aacgatcaga gtccggtgga 841 gaacgcccga tatgcttttt tgaggtcatt gcagagaagg tgtactgaca aggcacttga 901 aaatatggaa gacgaatcaa tggattgcag aagtggaaag cttttgttat tacttccatc 961 acttcaggct attgctcaac aattggtaga agatgtccaa cttgctcgtt tgttcggtct 1021 cgtgaatgtc gattcgttaa tggaagaact tattctaaat gatatgaaac cttcagatcc 1081 acagatatta caaacgagtc tggcatcacc ggtgaactcg tccgttaaag cagaagttga 1141 attggaagaa tagtttccaa ttttccaata ttttatattc aagagaccat aatctcatct 1201 tgcctcc // LOCUS AY204177 1385 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk701c8 nuclear receptor NHR-68 mRNA, complete cds. ACCESSION AY204177 VERSION AY204177.1 GI:28396035 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1385) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1385) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1385 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="V" /map="H12C20.3" /clone="yk701c8" misc_RNA 1..22 /product="trans-spliced leader sequence SL-1" CDS 43..1200 /codon_start=1 /product="nuclear receptor NHR-68" /protein_id="AAO39181.1" /db_xref="GI:28396036" /translation="MENKEVCLVCQDFSSGYHYGIPSCNGCKTFFRRTVMKKQKFVCQ FDQNCPVDKSIRCACRFCRFEKCLKVGMDKTSLQASRDPIGYTKRNKKTLRHPMNELS GDESNSCTPDRQLSPLRSFENSLNFLAVRERSANELRMSSYLPKRSLKQALCSKPLIN DPIFMSKHATVSPRHTFEKLRFITQDDYHYWHERDWFVLTEYAKTFKVFKNMPYHDKT ELVCHAAIVIPVLNQVYNSPDYGLDTVVFPDGTYYDRTHEPTRPAGLNRKKYQVLDLV LKPFREMEINFNEFAAFKAITFLNPDADISLESKHAINEERVLITKQLYAYMVQKDGL EKAIFRFGRLILMGTSMSKMACESKEAVWIADFFENIGFTSFAKELIFGDH" BASE COUNT 463 a 235 c 254 g 433 t ORIGIN 1 ggtttaatta cccaagtttg agccggttct aatcctccgt caatggagaa caaagaggtt 61 tgccttgttt gccaagattt ttcaagcgga tatcattatg gaataccttc atgtaatgga 121 tgcaagacct tcttccgtcg tacagtgatg aaaaaacaaa agtttgtatg ccaattcgat 181 caaaactgcc ctgttgataa aagcatccga tgtgcatgca gattttgccg tttcgaaaaa 241 tgcttgaagg taggaatgga caagacttct cttcaagcat caagagatcc aattggttat 301 actaaaagaa acaagaagac tttacggcac ccaatgaatg aattgagcgg tgatgaatcg 361 aatagttgta caccagacag acagttatct cctcttcggt cgtttgagaa cagtttgaat 421 tttcttgccg tgagggagag atcagcaaat gaacttcgaa tgtcttcata tcttccaaaa 481 cgaagtctga agcaagcact ttgctcaaaa cctctcatta atgatcctat tttcatgagt 541 aaacatgcaa cagtgtcacc tcgtcatact tttgaaaaac tgagatttat cactcaagat 601 gattatcatt actggcacga gagagattgg ttcgttctca ctgaatatgc aaaaacgttc 661 aaggttttta agaatatgcc atatcatgat aaaacggaat tagtttgcca tgcagctatt 721 gtcattcctg ttctcaatca agtttataat tccccagatt atgggcttga taccgtagta 781 tttccggatg gaacatatta tgatagaact catgaaccta caagaccagc tggacttaac 841 cgcaagaagt accaagtgct agatcttgtt ttgaaaccgt ttagagaaat ggaaattaat 901 ttcaatgaat ttgcagcatt taaagcaatc acatttttaa atccagatgc ggatatttcc 961 cttgaatcaa aacatgcaat taatgaggaa cgtgttttaa tcacaaaaca attgtatgcg 1021 tatatggtac agaaggacgg gttggagaaa gcaattttca gatttgggcg attaattctt 1081 atgggtactt caatgtcaaa aatggcttgt gaatcaaagg aagctgtttg gattgctgat 1141 ttctttgaaa atattggttt cacgtctttt gcaaaggagc taatttttgg agatcactaa 1201 ttctgctccc aagttttatg atctcataat ttatgttcag ttattttttt cagtttaagg 1261 aatcgtttta aatatgcgat ttcagtttat cgttaatgat gtttcaaatg ttctataaaa 1321 ccacaaaatt ctaataaaat taattttcac tcctaaaaaa aaaaaaaaaa aaaaaaaaaa 1381 aaaaa // LOCUS AY204176 1320 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone pCG101 nuclear receptor NHR-67 mRNA, complete cds. ACCESSION AY204176 VERSION AY204176.1 GI:28396033 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1320) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1320) AUTHORS Robinson-Rechavi,M., Maina,C.V., Gissendanner,C.R., Laudet,V. and Sluder,A. TITLE Direct Submission JOURNAL Submitted (17-DEC-2002) New England Biolabs, 32 Tozer Road, Beverly, MA 01915, USA FEATURES Location/Qualifiers source 1..1320 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /chromosome="IV" /map="C08F8.8" /clone="pCG101" CDS 11..1240 /codon_start=1 /product="nuclear receptor NHR-67" /protein_id="AAO39180.1" /db_xref="GI:28396034" /translation="MSVPSSRILLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRR HRQYVCKNKGSPSEGQCKVDKTHRNQCRACRLRKCLEIGMNKDAVQHERGPRNSSLRR QQMMFDHGSSPNSPEMGSESDAIILPTSSMNRDTVAGTAARIFFALVGFCQNPLNGVP KERQMTMFQQNWAALLVLHATETRAITSKQIRTETISGSSEQRNAVANAFEIIERLQL DNREYMMLKHFTMWRDTPSAIQIVFQLASIQNFTHRTEPTRYIQCINAIAAIPTTSII DVLFRPSIGSASMPRLIQDMFKPPQQPTPTSLFPMANFNLNFLLKQEKTETEEGEDIE EEDDATSSNQFDENSSTDDRSVGELDPVQLFLALNSSTQPSSASSPSSSRPRHSIRSI TELLSIQEEESVNVEEV" BASE COUNT 415 a 271 c 258 g 376 t ORIGIN 1 ggtttcacag atgtcggttc caagcagtcg aattctattg gatgttgatt gtagagtctg 61 tgaagatcat tcgtcgggga agcattacag tattttttcc tgcgacgggt gtgctggatt 121 ctttaaacgt tcaatccgtc gtcatcgtca atacgtgtgc aaaaacaaag gcagtccatc 181 cgaaggacaa tgcaaagtgg acaaaacaca ccgcaaccag tgcagagctt gccgactaag 241 aaagtgtctg gaaattggga tgaacaaaga tgctgtccaa catgagagag ggcctcgtaa 301 ctcaagttta agacgacaac agatgatgtt cgatcatgga tcctctccta attcgccgga 361 aatgggatca gaaagtgatg caataattct tccgacatca tcaatgaatc gtgacacagt 421 ggccggtact gctgctcgaa tcttttttgc acttgttgga ttttgtcaga atcctttgaa 481 tggagtacct aaagaacggc aaatgacaat gtttcaacaa aattgggcag cacttcttgt 541 tctccatgca actgaaacac gtgccataac ttctaagcaa ataaggactg agacgatatc 601 cggtagctca gagcaaagaa atgcggttgc taacgcgttt gaaataattg aacgtttaca 661 attggataat agagaataca tgatgttgaa acatttcaca atgtggagag atacaccaag 721 tgcaattcaa attgtctttc agttagcatc tattcagaat ttcacacata gaaccgaacc 781 gacgagatat atccaatgta taaatgcaat tgccgctatt ccaacaactt caataattga 841 tgttctattc cgcccttcaa ttggatcagc ttcaatgcca agacttattc aagacatgtt 901 caagccacca caacaaccca ctcctacgtc actgtttcca atggcaaact tcaatttgaa 961 ctttctatta aaacaagaaa aaaccgaaac tgaagagggt gaagatattg aagaagagga 1021 tgatgcgacg agtagcaatc aatttgatga aaattcttct actgatgata gatctgtcgg 1081 agaactggat cccgttcaac ttttcttggc tcttaattcc tcaactcagc cttcatcggc 1141 atcatcccct tcctcttcaa gaccacgtca ttcgattcga tcaataactg aattattatc 1201 aattcaagaa gaagagagtg ttaatgttga agaggtttag atagtaaatt catgtttcat 1261 atacagtaac tcaattattc taagtatctc ttttcattgt ctttttcact ccgtttcttg // LOCUS AY204175 1521 bp mRNA linear INV 17-FEB-2003 DEFINITION Caenorhabditis elegans clone yk1003h10 nuclear receptor NHR-65 mRNA, complete cds. ACCESSION AY204175 VERSION AY204175.1 GI:28396031 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda;