##gff-version 2 ##date 2003-02-20 ##sequence-region CHROMOSOME_I 1 15080471 CHROMOSOME_I assembly_tag Finished 1 6 . + . Note "Left: cTel33B" CHROMOSOME_I assembly_tag Polymorphism 656 656 . + . Note "A->C in cTel33B" CHROMOSOME_I assembly_tag Polymorphism 668 668 . + . Note "A->C in cTel33B" CHROMOSOME_I assembly_tag Finished 2032 2036 . + . Note "Right: cTel33B" CHROMOSOME_I assembly_tag Finished 7010857 7010860 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 7010957 7010960 . + . Note "right end: C03F12 (St Louis)" CHROMOSOME_I assembly_tag Finished 7028782 7028785 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 7028882 7028885 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 7028882 7028885 . + . Note "right end: right end of H06O01" CHROMOSOME_I assembly_tag Clone 7028882 7028885 . + . Note "right end: H06O01 clone right end" CHROMOSOME_I assembly_tag Clone 7031658 7031661 . + . Note "left end: F15C11 clone left end" CHROMOSOME_I assembly_tag Finished 7031658 7031661 . + . Note "Left: F15C11" CHROMOSOME_I assembly_tag Clone 7031658 7031661 . + . Note "left end: START OF F15C11" CHROMOSOME_I assembly_tag Finished 7031758 7031761 . + . Note "Right: " CHROMOSOME_I assembly_tag Finished 7056242 7056245 . + . Note "Left: W01A8" CHROMOSOME_I assembly_tag Clone 7056242 7056245 . + . Note "left end: START OF W01A8" CHROMOSOME_I assembly_tag Clone 7056242 7056245 . + . Note "left end: START OF W01A8" CHROMOSOME_I assembly_tag Finished 7056342 7056345 . + . Note "Right: F15C11" CHROMOSOME_I assembly_tag Clone 7068579 7068582 . + . Note "right end: END OF F15C11" CHROMOSOME_I assembly_tag Clone 7081422 7081425 . + . Note "left end: START OF F22D6" CHROMOSOME_I assembly_tag Clone 7081422 7081425 . + . Note "left end: Clone left end F22D6" CHROMOSOME_I assembly_tag Finished 7081422 7081425 . + . Note "Left: F22D6" CHROMOSOME_I assembly_tag Finished 7081522 7081525 . + . Note "Right: W01A8" CHROMOSOME_I assembly_tag Clone 7092679 7092686 . + . Note "right end: End of W01A8" CHROMOSOME_I assembly_tag oligo 7095978 7095997 . + . Note "serial#=F22D6.1 template=xx96e2.s1 sequence=CTAACTCGTTCTATTTTAGC flags=" CHROMOSOME_I assembly_tag oligo 7099000 7099018 . + . Note "serial#=F22D6.7 template=xx95a4.s1tc sequence=GATCAATCTGATTATCGTC flags=" CHROMOSOME_I assembly_tag oligo 7102082 7102102 . + . Note "serial#=F22D6.4 template=xx98c8.s1 sequence=CAATCTTCGTTCTTTACTAAG flags=" CHROMOSOME_I assembly_tag oligo 7105816 7105837 . + . Note "serial#=F22D6.3 template=xx99b1.s1 sequence=CATTAATATCGACGATAGTAAG flags=" CHROMOSOME_I assembly_tag oligo 7106430 7106448 . + . Note "serial#=F22D6.6 template=xx95c7.s1 sequence=GCGAAAAACTAACATTAGC flags=" CHROMOSOME_I assembly_tag oligo 7107264 7107280 . + . Note "serial#=F22D7.2 template=xx94c12.s1t sequence=CATAACCATCTTCAGGC flags=" CHROMOSOME_I assembly_tag oligo 7107639 7107656 . + . Note "serial#=F22D6.8 template=xx96g8.s2a sequence=ATGGAATTAGGAAGTACG flags=" CHROMOSOME_I assembly_tag oligo 7122186 7122203 . + . Note "serial#=F22D6.5 template=xx97g2.s1 sequence=AAATGAATCTCCACTTCC flags=" CHROMOSOME_I assembly_tag Finished 7122812 7122815 . + . Note "Left: K10D3" CHROMOSOME_I assembly_tag Clone 7122912 7122915 . + . Note "right end: END OF F22D6" CHROMOSOME_I assembly_tag Clone 7122912 7122915 . + . Note "right end: F22D6" CHROMOSOME_I assembly_tag Finished 7122912 7122915 . + . Note "Right: F22D6" CHROMOSOME_I assembly_tag Finished 7153490 7153493 . + . Note "Left: H37N21" CHROMOSOME_I assembly_tag Clone 7153590 7153593 . + . Note "right end: K10D3" CHROMOSOME_I assembly_tag Finished 7153590 7153593 . + . Note "Right: K10D3" CHROMOSOME_I assembly_tag Clone 7153590 7153593 . + . Note "right end: K10D3" CHROMOSOME_I assembly_tag Clone 7158861 7158864 . + . Note "left end: K07G5" CHROMOSOME_I assembly_tag Finished 7158861 7158864 . + . Note "Left: K07G5" CHROMOSOME_I assembly_tag Clone 7158861 7158864 . + . Note "left end: K07G5" CHROMOSOME_I assembly_tag Finished 7158961 7158964 . + . Note "Right: H37N21" CHROMOSOME_I assembly_tag Clone 7180828 7180831 . + . Note "left end: M05B5" CHROMOSOME_I assembly_tag Finished 7180828 7180831 . + . Note "Left: M05B5" CHROMOSOME_I assembly_tag Clone 7180828 7180831 . + . Note "left end: Beginning of M05B5" CHROMOSOME_I assembly_tag Finished 7180928 7180931 . + . Note "Right: K07G5" CHROMOSOME_I assembly_tag Finished 7199867 7199870 . + . Note "Left: C01H6" CHROMOSOME_I assembly_tag Clone 7199867 7199870 . + . Note "left end: Beginning of C01H6" CHROMOSOME_I assembly_tag Clone 7199867 7199870 . + . Note "left end: Start of C01H6" CHROMOSOME_I assembly_tag Finished 7199968 7199971 . + . Note "Right: M05B5" CHROMOSOME_I assembly_tag Clone 7222763 7222766 . + . Note "right end: End of M05B5" CHROMOSOME_I assembly_tag repeat 7232336 7232382 . + . CHROMOSOME_I assembly_tag repeat 7232383 7232413 . + . CHROMOSOME_I assembly_tag repeat 7232464 7232496 . + . CHROMOSOME_I assembly_tag repeat 7232497 7232538 . + . CHROMOSOME_I assembly_tag Finished 7240122 7240125 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 7240222 7240225 . + . Note "right end: End of C01H6" CHROMOSOME_I assembly_tag Clone 7240222 7240225 . + . Note "right end: C01H6" CHROMOSOME_I assembly_tag Finished 7240222 7240225 . + . Note "Right: C01H6" CHROMOSOME_I assembly_tag Clone 7240408 7240413 . + . Note "left end: R06C7" CHROMOSOME_I assembly_tag Clone 7240408 7240413 . + . Note "left end: R06C7" CHROMOSOME_I assembly_tag Finished 7240408 7240413 . + . Note "Left: R06C7" CHROMOSOME_I assembly_tag Finished 7240508 7240513 . + . Note "Right: " CHROMOSOME_I assembly_tag Finished 7271215 7271218 . + . Note "Left: F21C3" CHROMOSOME_I assembly_tag Clone 7271215 7271218 . + . Note "left end: F21C3" CHROMOSOME_I assembly_tag Clone 7271215 7271218 . + . Note "left end: F21C3" CHROMOSOME_I assembly_tag Finished 7271315 7271318 . + . Note "Right: R06C7" CHROMOSOME_I assembly_tag Clone 7279927 7279932 . + . Note "right end: R06C7" CHROMOSOME_I assembly_tag Finished 7297306 7297309 . + . Note "Left: F13G3" CHROMOSOME_I assembly_tag Clone 7297306 7297309 . + . Note "left end: F13G3" CHROMOSOME_I assembly_tag Clone 7297306 7297309 . + . Note "left end: F13G3" CHROMOSOME_I assembly_tag Finished 7297406 7297409 . + . Note "Right: F21C3" CHROMOSOME_I assembly_tag Clone 7309333 7309336 . + . Note "right end: F21C3" CHROMOSOME_I assembly_tag annotation 7317973 7317973 . + . Note "A single M13 clone had a C in this position rather than a T (in another 5 clones)" CHROMOSOME_I assembly_tag Clone 7321752 7321755 . + . Note "left end: START OF F52A8" CHROMOSOME_I assembly_tag Finished 7321752 7321755 . + . Note "Left: F52A8" CHROMOSOME_I assembly_tag Clone 7321752 7321755 . + . Note "left end: F52A8" CHROMOSOME_I assembly_tag Finished 7321852 7321855 . + . Note "Right: F13G3" CHROMOSOME_I assembly_tag Clone 7337532 7337535 . + . Note "right end: End of F13G3" CHROMOSOME_I assembly_tag Clone 7356916 7356919 . + . Note "left end: Start of F07A5" CHROMOSOME_I assembly_tag Clone 7356916 7356919 . + . Note "left end: START OF F07A5" CHROMOSOME_I assembly_tag Finished 7356916 7356919 . + . Note "Left: F07A5" CHROMOSOME_I assembly_tag Finished 7357016 7357019 . + . Note "Right: F52A8" CHROMOSOME_I assembly_tag Clone 7361505 7361508 . + . Note "right end: F52A8" CHROMOSOME_I assembly_tag Finished 7389444 7389447 . + . Note "Left: C15A11" CHROMOSOME_I assembly_tag Clone 7389444 7389447 . + . Note "left end: C15A11" CHROMOSOME_I assembly_tag Clone 7389444 7389447 . + . Note "left end: Beginning of C15A11" CHROMOSOME_I assembly_tag Finished 7389544 7389547 . + . Note "Right: F07A5" CHROMOSOME_I assembly_tag Finished 7389544 7389547 . + . Note "Right: F07A5" CHROMOSOME_I assembly_tag Clone 7395061 7395064 . + . Note "right end: End of F07A5" CHROMOSOME_I assembly_tag Finished 7431294 7431297 . + . Note "Left: C44E1" CHROMOSOME_I assembly_tag Clone 7431394 7431397 . + . Note "right end: End of C15A11" CHROMOSOME_I assembly_tag Clone 7431394 7431397 . + . Note "right end: C15A11" CHROMOSOME_I assembly_tag Finished 7431394 7431397 . + . Note "Right: C15A11" CHROMOSOME_I assembly_tag Clone 7443778 7443781 . + . Note "left end: ZK524\n" CHROMOSOME_I assembly_tag Finished 7443778 7443781 . + . Note "Left: ZK524" CHROMOSOME_I assembly_tag Clone 7443778 7443781 . + . Note "left end: Beginning of ZK524" CHROMOSOME_I assembly_tag Finished 7443878 7443881 . + . Note "Right: C44E1" CHROMOSOME_I assembly_tag Finished 7473864 7473867 . + . Note "Left: T28F4" CHROMOSOME_I assembly_tag Clone 7473864 7473867 . + . Note "left end: Beginning of T28F4" CHROMOSOME_I assembly_tag Clone 7473864 7473867 . + . Note "left end: T28F4" CHROMOSOME_I assembly_tag Finished 7473964 7473967 . + . Note "Right: ZK524" CHROMOSOME_I assembly_tag Clone 7481645 7481648 . + . Note "right end: ZK524" CHROMOSOME_I assembly_tag Clone 7504327 7504330 . + . Note "left end: C26C6" CHROMOSOME_I assembly_tag Clone 7504327 7504330 . + . Note "left end: C26C6" CHROMOSOME_I assembly_tag Finished 7504327 7504330 . + . Note "Left: C26C6" CHROMOSOME_I assembly_tag Finished 7504427 7504430 . + . Note "Right: T28F4" CHROMOSOME_I assembly_tag Clone 7515244 7515247 . + . Note "right end: T28F4" CHROMOSOME_I assembly_tag Finished 7546695 7546698 . + . Note "Left: H15M21" CHROMOSOME_I assembly_tag Clone 7546795 7546798 . + . Note "right end: C26C6" CHROMOSOME_I assembly_tag Finished 7546795 7546798 . + . Note "Right: C26C6" CHROMOSOME_I assembly_tag Clone 7546795 7546798 . + . Note "right end: C26C6" CHROMOSOME_I assembly_tag Clone 7558667 7558670 . + . Note "left end: T25G3" CHROMOSOME_I assembly_tag Clone 7558667 7558670 . + . Note "left end: T25G3" CHROMOSOME_I assembly_tag Finished 7558667 7558670 . + . Note "Left: T25G3" CHROMOSOME_I assembly_tag Finished 7558767 7558770 . + . Note "Right: H15M21" CHROMOSOME_I assembly_tag Clone 7573092 7573095 . + . Note "left end: D2030" CHROMOSOME_I assembly_tag Clone 7573092 7573095 . + . Note "left end: START OF D2030" CHROMOSOME_I assembly_tag Finished 7573092 7573095 . + . Note "Left: D2030" CHROMOSOME_I assembly_tag Finished 7573192 7573195 . + . Note "Right: T25G3" CHROMOSOME_I assembly_tag annotation 7587867 7587913 . + . Note "single-stranded area confirmed by\nrestriction digest" CHROMOSOME_I assembly_tag Clone 7594188 7594191 . - . Note "right end: END OF T25G3" CHROMOSOME_I assembly_tag Clone 7594960 7594963 . + . Note "left end: Start of F57A5" CHROMOSOME_I assembly_tag Finished 7615653 7615656 . + . Note "Left: F57A5" CHROMOSOME_I assembly_tag Clone 7615753 7615756 . + . Note "right end: END OF D2030" CHROMOSOME_I assembly_tag Clone 7615753 7615756 . + . Note "right end: END OF D2030" CHROMOSOME_I assembly_tag Finished 7615753 7615756 . - . Note "Right: D2030" CHROMOSOME_I assembly_tag Clone 7615861 7615864 . + . Note "left end: START OF F29D11" CHROMOSOME_I assembly_tag Finished 7615861 7615864 . + . Note "Left: F29D11" CHROMOSOME_I assembly_tag Clone 7615861 7615864 . + . Note "left end: START OF F29D11" CHROMOSOME_I assembly_tag Finished 7615961 7615964 . + . Note "Right: F57A5" CHROMOSOME_I assembly_tag Clone 7636031 7636034 . + . Note "right end: END OF F57A5" CHROMOSOME_I assembly_tag Clone 7645667 7645670 . + . Note "left end: F26A3" CHROMOSOME_I assembly_tag Finished 7645667 7645670 . + . Note "Left: F26A3" CHROMOSOME_I assembly_tag Clone 7645667 7645670 . + . Note "left end: START OF F26A3" CHROMOSOME_I assembly_tag Finished 7645767 7645770 . + . Note "Right: F29D11" CHROMOSOME_I assembly_tag annotation 7646652 7646667 . + . Note "cosmid pcr" CHROMOSOME_I assembly_tag Clone 7659124 7659127 . + . Note "right end: F29D11" CHROMOSOME_I assembly_tag Finished 7683585 7683588 . + . Note "Left: T24B1" CHROMOSOME_I assembly_tag Finished 7683682 7683684 . + . Note "Right: F26A3" CHROMOSOME_I assembly_tag Clone 7683682 7683685 . + . Note "right end: F26A3" CHROMOSOME_I assembly_tag Clone 7683682 7683685 . + . Note "right end: F26A3" CHROMOSOME_I assembly_tag Finished 7683682 7683685 . + . Note "Right: F26A3" CHROMOSOME_I assembly_tag Finished 7685868 7685871 . + . Note "Left: T23G11" CHROMOSOME_I assembly_tag Clone 7685868 7685871 . + . Note "left end: Beginning of T23G11\n" CHROMOSOME_I assembly_tag Clone 7685868 7685871 . + . Note "left end: Beginning of T23G11\n" CHROMOSOME_I assembly_tag Finished 7685868 7685871 . + . Note "Left: T23G11" CHROMOSOME_I assembly_tag Finished 7685968 7685971 . + . Note "Right: T24B1" CHROMOSOME_I assembly_tag Clone 7710530 7710533 . + . Note "left end: Beginning of F27D4" CHROMOSOME_I assembly_tag Finished 7710530 7710533 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 7710626 7710629 . + . Note "Right: T23G11" CHROMOSOME_I assembly_tag Clone 7724613 7724616 . - . Note "left end: START OF F58H10" CHROMOSOME_I assembly_tag Finished 7746575 7746578 . + . Note "Left: F58H10" CHROMOSOME_I assembly_tag Clone 7746676 7746679 . + . Note "right end: F27D4" CHROMOSOME_I assembly_tag Finished 7746676 7746679 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 7766774 7766777 . + . Note "Left: ZK1014" CHROMOSOME_I assembly_tag Clone 7766874 7766877 . + . Note "right end: F58H10" CHROMOSOME_I assembly_tag Finished 7766874 7766877 . + . Note "Right: F58H10" CHROMOSOME_I assembly_tag Clone 7766874 7766877 . + . Note "right end: F58H10" CHROMOSOME_I assembly_tag Finished 7778264 7778267 . + . Note "Left: H15N14" CHROMOSOME_I assembly_tag Finished 7778364 7778367 . + . Note "Right: ZK1014" CHROMOSOME_I assembly_tag Clone 7778364 7778367 . + . Note "right end: END OF ZK1014" CHROMOSOME_I assembly_tag Clone 7778364 7778367 . + . Note "right end: ZK1014" CHROMOSOME_I assembly_tag annotation 7787984 7788350 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -sonicated single clone in inverted repeat region. Size confirmed byrestriction digest." CHROMOSOME_I assembly_tag Finished 7789320 7789323 . + . Note "Left: VH15N14R" CHROMOSOME_I assembly_tag Clone 7789420 7789423 . + . Note "right end: H15N14" CHROMOSOME_I assembly_tag Finished 7789420 7789423 . + . Note "Right: H15N14" CHROMOSOME_I assembly_tag Clone 7789420 7789423 . + . Note "right end: H15N14" CHROMOSOME_I assembly_tag Clone 7791579 7791582 . + . Note "left end: D2005" CHROMOSOME_I assembly_tag Finished 7791579 7791582 . - . Note "Left: D2005" CHROMOSOME_I assembly_tag Finished 7791679 7791682 . + . Note "Right: VH15N14R" CHROMOSOME_I assembly_tag comment 7832539 7832539 . + . Note "removed A jes 31-12-01" CHROMOSOME_I assembly_tag Finished 7834915 7834918 . + . Note "Left: F30F8" CHROMOSOME_I assembly_tag Clone 7835015 7835018 . + . Note "right end: END OF D2005" CHROMOSOME_I assembly_tag Finished 7835015 7835018 . + . Note "Right: D2005" CHROMOSOME_I assembly_tag Finished 7859841 7859844 . + . Note "Left: R11A5" CHROMOSOME_I assembly_tag Clone 7859841 7859846 . + . Note "left end: START OF R11A5" CHROMOSOME_I assembly_tag Clone 7859841 7859846 . + . Note "left end: R11A5" CHROMOSOME_I assembly_tag Finished 7859941 7859944 . + . Note "Right: F30F8" CHROMOSOME_I assembly_tag Clone 7859941 7859944 . + . Note "right end: F30F8" CHROMOSOME_I assembly_tag annotation 7876221 7876235 . + . Note "tandem repeat across bases 16460 -\n16850. The repeat element is \nTCGTGGTGAGACCCA (15-mer)." CHROMOSOME_I assembly_tag annotation 7876342 7876356 . + . Note "tandem repeat across bases 16460 -\n16850. The repeat element is \nTCGTGGTGAGACCCA (15-mer)." CHROMOSOME_I assembly_tag annotation 7876584 7876618 . + . Note "tandem repeat across bases 16860 -\n17070. A typical repeat sequence is\nTTTTGGCGGGAAATTTAAATTTTCTGTGAAAAATA\n(a 35-mer)." CHROMOSOME_I assembly_tag annotation 7876705 7876739 . + . Note "tandem repeat across bases 16860 -\n17070. A typical repeat sequence is\nTTTTGGCGGGAAATTTAAATTTTCTGTGAAAAATA\n(a 35-mer)." CHROMOSOME_I assembly_tag annotation 7876848 7876888 . + . Note "tandem repeat across bases 17130 -\n17730. A typical repeat element is\nTCTTCTGGAAATTTCGAAAAAATTCTCGAATGTTCCAGAAC (41-mer). \nRestriction digests indicate that the true extent of \nthis repeat is ca 1.7kb longer than shown here." CHROMOSOME_I assembly_tag annotation 7876969 7877009 . + . Note "tandem repeat across bases 17130 -\n17730. A typical repeat element is\nTCTTCTGGAAATTTCGAAAAAATTCTCGAATGTTCCAGAAC (41-mer). \nRestriction digests indicate that the true extent of \nthis repeat is ca 1.7kb longer than shown here." CHROMOSOME_I assembly_tag Clone 7886408 7886411 . + . Note "left end: F55D12" CHROMOSOME_I assembly_tag Clone 7886408 7886411 . + . Note "left end: F55D12" CHROMOSOME_I assembly_tag Finished 7886408 7886411 . + . Note "Left: F55D12" CHROMOSOME_I assembly_tag Finished 7886508 7886511 . + . Note "Right: R11A5" CHROMOSOME_I assembly_tag annotation 7887537 7887572 . + . Note "base count is correct" CHROMOSOME_I assembly_tag Clone 7895430 7895435 . + . Note "right end: R11A5" CHROMOSOME_I assembly_tag Finished 7917435 7917438 . + . Note "Left: F20G4" CHROMOSOME_I assembly_tag Clone 7917435 7917438 . + . Note "left end: START OF F20G4" CHROMOSOME_I assembly_tag Clone 7917435 7917438 . + . Note "left end: F20G4" CHROMOSOME_I assembly_tag Stolen 7917435 7917485 . + . Note "Read: read Raided from F55D12" CHROMOSOME_I assembly_tag oligo 7917481 7917499 . + . Note "serial#=F20G4.1 template=xy90d12.s1 sequence=GCTGATTGAAAAGTTTTGC flags=" CHROMOSOME_I assembly_tag Finished 7917535 7917538 . + . Note "Right: F55D12" CHROMOSOME_I assembly_tag Clone 7941587 7941590 . + . Note "left end: T22C1" CHROMOSOME_I assembly_tag Finished 7941587 7941590 . + . Note "Left: T22C1" CHROMOSOME_I assembly_tag annotation 7944123 7944125 . + . Note "read 819 shows an A at base 2538 but read 928/65 shows a G. Edited to a G" CHROMOSOME_I assembly_tag Clone 7956746 7956749 . + . Note "right end: F20G4" CHROMOSOME_I assembly_tag Finished 7980994 7980997 . + . Note "Left: H05L14\n" CHROMOSOME_I assembly_tag Clone 7981094 7981097 . + . Note "right end: T22C1 clone right end\n" CHROMOSOME_I assembly_tag Clone 7981094 7981097 . + . Note "right end: T22C1" CHROMOSOME_I assembly_tag Finished 7981094 7981097 . + . Note "Right: T22C1" CHROMOSOME_I assembly_tag Clone 8000526 8000529 . + . Note "left end: START OF C54G4" CHROMOSOME_I assembly_tag Clone 8000526 8000529 . + . Note "left end: C54G4 clone left end\n" CHROMOSOME_I assembly_tag Finished 8000526 8000529 . + . Note "Left: C54G4" CHROMOSOME_I assembly_tag Finished 8000626 8000629 . + . Note "Right: H05L14\n" CHROMOSOME_I assembly_tag Finished 8035165 8035168 . + . Note "Left: K04G2" CHROMOSOME_I assembly_tag Clone 8035165 8035168 . + . Note "left end: Beginning of K04G2" CHROMOSOME_I assembly_tag Clone 8035165 8035168 . + . Note "left end: START OF K04G2" CHROMOSOME_I assembly_tag Finished 8035265 8035268 . + . Note "Right: C54G4" CHROMOSOME_I assembly_tag Clone 8038235 8038238 . + . Note "right end: End of C54G4" CHROMOSOME_I assembly_tag Finished 8068148 8068151 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8068148 8068151 . + . Note "left end: F18C12" CHROMOSOME_I assembly_tag Clone 8073420 8073423 . + . Note "right end: K04G2" CHROMOSOME_I assembly_tag Clone 8073420 8073423 . + . Note "right end: End of K04G2" CHROMOSOME_I assembly_tag Finished 8073420 8073423 . + . Note "Right: K04G2" CHROMOSOME_I assembly_tag repeat 8078526 8078655 . + . CHROMOSOME_I assembly_tag repeat 8078656 8078704 . + . CHROMOSOME_I assembly_tag repeat 8078705 8078868 . + . CHROMOSOME_I assembly_tag repeat 8099732 8099757 . + . CHROMOSOME_I assembly_tag repeat 8103138 8103216 . + . CHROMOSOME_I assembly_tag repeat 8104532 8104557 . + . CHROMOSOME_I assembly_tag Finished 8105733 8105740 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8105833 8105836 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8105833 8105836 . + . Note "right end: F18C12" CHROMOSOME_I assembly_tag Clone 8105833 8105836 . - . Note "right end: F18C12" CHROMOSOME_I assembly_tag annotation 8113486 8113506 . + . Note "single clone across this region\nsequence cannot be guaranteed" CHROMOSOME_I assembly_tag Clone 8139023 8139026 . + . Note "left end: T28B8" CHROMOSOME_I assembly_tag Finished 8139023 8139026 . + . Note "Left: T28B8" CHROMOSOME_I assembly_tag Clone 8139023 8139026 . + . Note "left end: T28B8" CHROMOSOME_I assembly_tag Finished 8139123 8139131 . - . Note "Right: " CHROMOSOME_I assembly_tag comment 8150475 8150487 . + . Note "?do long term" CHROMOSOME_I assembly_tag annotation 8168589 8168656 . - . Note "34 AT's" CHROMOSOME_I assembly_tag repeat 8168627 8168656 . - . CHROMOSOME_I assembly_tag comment 8171259 8171264 . + . Note "?Diverges again" CHROMOSOME_I assembly_tag Finished 8172882 8172885 . + . Note "Left: H31B20" CHROMOSOME_I assembly_tag Clone 8172988 8172991 . - . Note "right end: T28B8" CHROMOSOME_I assembly_tag Finished 8172988 8172991 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8172988 8172991 . - . Note "right end: T28B8" CHROMOSOME_I assembly_tag Finished 8188053 8188056 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8188053 8188056 . + . Note "left end: F08A10" CHROMOSOME_I assembly_tag Clone 8188053 8188056 . + . Note "left end: F08A10" CHROMOSOME_I assembly_tag Finished 8188158 8188161 . - . Note "Right: H31B20" CHROMOSOME_I assembly_tag Finished 8211725 8211728 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8211725 8211728 . + . Note "left end: T02E1" CHROMOSOME_I assembly_tag Clone 8211725 8211728 . + . Note "left end: T02E1" CHROMOSOME_I assembly_tag Finished 8211820 8211828 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 8221865 8221865 . + . Note "cosmid pcr region, this A could be a G." CHROMOSOME_I assembly_tag annotation 8221868 8221868 . + . Note "cosmid pcr region, this T could be an A." CHROMOSOME_I assembly_tag Clone 8224172 8224175 . - . Note "right end: F08A10" CHROMOSOME_I assembly_tag Clone 8245135 8245138 . + . Note "left end: ZK265" CHROMOSOME_I assembly_tag Clone 8245135 8245138 . + . Note "left end: ZK265" CHROMOSOME_I assembly_tag Finished 8245135 8245138 . + . Note "Left: ZK265" CHROMOSOME_I assembly_tag Finished 8245239 8245244 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8249299 8249302 . - . Note "right end: T02E1" CHROMOSOME_I assembly_tag annotation 8254483 8254498 . - . Note "Data from single clone only.\nRestriction data across this region\nconfirms assembly." CHROMOSOME_I assembly_tag Clone 8281098 8281101 . + . Note "left end: Left Hand End T01G9" CHROMOSOME_I assembly_tag Clone 8281098 8281101 . + . Note "left end: T01G9" CHROMOSOME_I assembly_tag Finished 8281098 8281101 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8281200 8281203 . - . Note "Right: ZK265" CHROMOSOME_I assembly_tag Clone 8283506 8283509 . + . Note "right end: Right Hand End ZK265" CHROMOSOME_I assembly_tag Clone 8304796 8304799 . + . Note "left end: F52B5" CHROMOSOME_I assembly_tag Clone 8304796 8304799 . + . Note "left end: Left Hand End F52B5" CHROMOSOME_I assembly_tag Finished 8304796 8304799 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8304903 8304906 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 8311682 8311682 . + . Note "T01G9 calls a clear C here" CHROMOSOME_I assembly_tag Clone 8322394 8322397 . + . Note "right end: T01G9" CHROMOSOME_I assembly_tag Finished 8337966 8337969 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8337966 8337969 . + . Note "left end: C34B7" CHROMOSOME_I assembly_tag Clone 8337966 8337969 . + . Note "left end: C34B7" CHROMOSOME_I assembly_tag Finished 8338062 8338069 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8339356 8339359 . - . Note "right end: F52B5" CHROMOSOME_I assembly_tag annotation 8345362 8345419 . + . Note "single clone across this region\nassembly confirmed be restriction \ndigest data" CHROMOSOME_I assembly_tag Finished 8360579 8360582 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8360579 8360582 . + . Note "left end: F16D3" CHROMOSOME_I assembly_tag Clone 8360579 8360582 . + . Note "left end: F16D3" CHROMOSOME_I assembly_tag Finished 8360679 8360685 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8377916 8377919 . - . Note "right end: C34B7" CHROMOSOME_I assembly_tag Finished 8393069 8393072 . + . Note "Left: T19A6" CHROMOSOME_I assembly_tag Clone 8393166 8393168 . - . Note "right end: F16D3" CHROMOSOME_I assembly_tag Clone 8393166 8393169 . - . Note "right end: F16D3" CHROMOSOME_I assembly_tag Finished 8393166 8393169 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8393166 8393169 . - . Note "right end: F16D3" CHROMOSOME_I assembly_tag Finished 8412452 8412455 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8412452 8412455 . + . Note "left end: F02E9" CHROMOSOME_I assembly_tag Clone 8412452 8412455 . + . Note "left end: F02E9" CHROMOSOME_I assembly_tag Finished 8412548 8412551 . - . Note "Right: T19A6" CHROMOSOME_I assembly_tag annotation 8428853 8428853 . + . Note "could be T" CHROMOSOME_I assembly_tag annotation 8428854 8428854 . + . Note "could be G" CHROMOSOME_I assembly_tag annotation 8428857 8428857 . + . Note "could be T" CHROMOSOME_I assembly_tag annotation 8428858 8428858 . + . Note "could be A" CHROMOSOME_I assembly_tag annotation 8428860 8428860 . + . Note "could be A" CHROMOSOME_I assembly_tag annotation 8428863 8428863 . + . Note "could be T" CHROMOSOME_I assembly_tag annotation 8428866 8428872 . + . Note "base accuracy not guaranteed in this \nregion.\ncould be TGTTGTG" CHROMOSOME_I assembly_tag Clone 8441430 8441433 . + . Note "left end: F10D11" CHROMOSOME_I assembly_tag Finished 8441430 8441433 . + . Note "Left: F10D11" CHROMOSOME_I assembly_tag Clone 8441430 8441433 . + . Note "left end: F10D11" CHROMOSOME_I assembly_tag Finished 8441529 8441532 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8460326 8460329 . - . Note "right end: ZK254" CHROMOSOME_I assembly_tag annotation 8462836 8462858 . + . Note "Divergence between F10D11 & D1081" CHROMOSOME_I assembly_tag Finished 8462859 8462862 . + . Note "Left: D1081" CHROMOSOME_I assembly_tag Finished 8462930 8462933 . - . Note "Right: F10D11" CHROMOSOME_I assembly_tag Clone 8478472 8478475 . - . Note "right end: F10D11" CHROMOSOME_I assembly_tag Clone 8501116 8501119 . + . Note "left end: K02B12" CHROMOSOME_I assembly_tag Finished 8501116 8501119 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8501116 8501119 . + . Note "left end: K02B12" CHROMOSOME_I assembly_tag Finished 8501211 8501214 . - . Note "Right: D1081" CHROMOSOME_I assembly_tag Clone 8503777 8503780 . - . Note "right end: D1081" CHROMOSOME_I assembly_tag Finished 8539551 8539557 . + . Note "Left: M04C7" CHROMOSOME_I assembly_tag Clone 8539653 8539656 . - . Note "right end: K02B12" CHROMOSOME_I assembly_tag Clone 8539653 8539656 . - . Note "right end: K02B12" CHROMOSOME_I assembly_tag Finished 8539653 8539656 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 8558412 8558415 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8558412 8558415 . + . Note "left end: T01H8" CHROMOSOME_I assembly_tag Clone 8558412 8558415 . + . Note "left end: T01H8" CHROMOSOME_I assembly_tag Finished 8558509 8558514 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8587000 8587005 . + . Note "left end: R05D11" CHROMOSOME_I assembly_tag Finished 8587000 8587005 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8587000 8587005 . + . Note "left end: R05D11" CHROMOSOME_I assembly_tag Finished 8587109 8587112 . - . Note "Right: " CHROMOSOME_I assembly_tag ambiguous 8587452 8587452 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8587453 8587453 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8588147 8588147 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8588654 8588654 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8589344 8589362 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag ambiguous 8589439 8589439 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8589724 8589724 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8590559 8590559 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8590572 8590572 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_I assembly_tag ambiguous 8591480 8591497 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag Conflict 8591506 8591506 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8591915 8591915 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8592092 8592092 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8594849 8594849 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8595142 8595142 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8595146 8595146 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8595332 8595332 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8596103 8596103 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8596435 8596441 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag Conflict 8596957 8596957 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8596958 8596958 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8596959 8596959 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag stop 8597474 8597477 . + . CHROMOSOME_I assembly_tag Conflict 8597560 8597560 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8598815 8598815 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8598847 8598847 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8598959 8598959 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8599255 8599255 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8599319 8599319 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8599859 8599859 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag stop 8601001 8601003 . + . CHROMOSOME_I assembly_tag ambiguous 8604529 8604533 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag Conflict 8604543 8604543 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8604553 8604553 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8604629 8604629 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8605232 8605232 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_I assembly_tag stop 8606857 8606863 . + . CHROMOSOME_I assembly_tag ambiguous 8606992 8606992 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8606998 8606998 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8607943 8607943 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8608782 8608802 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag ambiguous 8609045 8609045 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag stop 8609506 8609508 . + . CHROMOSOME_I assembly_tag Conflict 8609925 8609925 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8610095 8610095 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8610421 8610421 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8611616 8611616 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8612383 8612383 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8612545 8612545 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8612547 8612547 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Clone 8613216 8613219 . + . Note "left end: F43G9" CHROMOSOME_I assembly_tag Finished 8613216 8613219 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8613216 8613219 . + . Note "left end: F43G9" CHROMOSOME_I assembly_tag Stolen 8613216 8613298 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8613216 8613324 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8613216 8613324 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8613216 8613324 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8613319 8613324 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8613320 8613324 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Finished 8613321 8613324 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8630503 8630508 . + . Note "right end: R05D11" CHROMOSOME_I assembly_tag Finished 8651282 8651285 . + . Note "Left: VF39H2l" CHROMOSOME_I assembly_tag Finished 8651378 8651381 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8651378 8651381 . - . Note "right end: F43G9" CHROMOSOME_I assembly_tag Clone 8651378 8651381 . - . Note "right end: F43G9" CHROMOSOME_I assembly_tag annotation 8652691 8652700 . + . Note "uncertain number of A's, edited to the\nlongest run with several representatives." CHROMOSOME_I assembly_tag Finished 8656040 8656043 . + . Note "Left: F39H2" CHROMOSOME_I assembly_tag Clone 8656040 8656043 . + . Note "left end: F39H2" CHROMOSOME_I assembly_tag Clone 8656040 8656043 . + . Note "left end: F39H2" CHROMOSOME_I assembly_tag Finished 8656138 8656141 . - . Note "Right: VF39H2l" CHROMOSOME_I assembly_tag Clone 8673589 8673592 . + . Note "left end: K07A12" CHROMOSOME_I assembly_tag Finished 8673589 8673592 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8673589 8673592 . + . Note "left end: K07A12" CHROMOSOME_I assembly_tag Finished 8673686 8673691 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8697752 8697755 . - . Note "right end: F39H2" CHROMOSOME_I assembly_tag Finished 8702579 8702582 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8702579 8702582 . + . Note "left end: F39H11" CHROMOSOME_I assembly_tag Clone 8702579 8702582 . + . Note "left end: F39H11" CHROMOSOME_I assembly_tag Finished 8702691 8702694 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 8707435 8707435 . + . Note "Cosmid PCR could read T." CHROMOSOME_I assembly_tag Clone 8710265 8710268 . - . Note "right end: K07A12" CHROMOSOME_I assembly_tag Clone 8721493 8721496 . + . Note "left end: C36B1" CHROMOSOME_I assembly_tag Clone 8721493 8721496 . + . Note "left end: C36B1" CHROMOSOME_I assembly_tag Finished 8721493 8721496 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8721598 8721602 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 8727096 8727096 . + . Note "One clone calls a C instead of T. Edited to majority." CHROMOSOME_I assembly_tag Clone 8739387 8739390 . + . Note "right end: F39H11" CHROMOSOME_I assembly_tag Finished 8766385 8766388 . + . Note "Left: DY3" CHROMOSOME_I assembly_tag Finished 8766485 8766488 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8766485 8766488 . + . Note "right end: C36B1" CHROMOSOME_I assembly_tag Clone 8766485 8766488 . - . Note "right end: C36B1" CHROMOSOME_I assembly_tag annotation 8781400 8781502 . + . Note "May be some discrepancies as sequence\nderived from YAC PCR." CHROMOSOME_I assembly_tag annotation 8781503 8781586 . + . Note "May be some discrepancies as sequence\nderived from YAC PCR." CHROMOSOME_I assembly_tag annotation 8781587 8781636 . + . Note "May be some discrepancies as sequence\nderived from YAC PCR." CHROMOSOME_I assembly_tag annotation 8799544 8799584 . + . Note "May be some discrepancies as sequence\nderived from a single YAC clone." CHROMOSOME_I assembly_tag Finished 8809014 8809017 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8809014 8809017 . + . Note "left end: F36A2" CHROMOSOME_I assembly_tag Clone 8809014 8809017 . + . Note "left end: F36A2" CHROMOSOME_I assembly_tag Finished 8809115 8809118 . - . Note "Right: DY3" CHROMOSOME_I assembly_tag Finished 8842328 8842331 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8842328 8842331 . + . Note "left end: F29D10" CHROMOSOME_I assembly_tag Clone 8842328 8842331 . + . Note "left end: F29D10" CHROMOSOME_I assembly_tag Finished 8842438 8842441 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8848120 8848123 . - . Note "right end: F36A2" CHROMOSOME_I assembly_tag Clone 8866171 8866174 . + . Note "left end: F55H12" CHROMOSOME_I assembly_tag Finished 8866171 8866174 . + . Note "Left: F55H12" CHROMOSOME_I assembly_tag Clone 8866171 8866174 . + . Note "left end: F55H12" CHROMOSOME_I assembly_tag Finished 8866276 8866279 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8877438 8877441 . - . Note "right end: F29D10" CHROMOSOME_I assembly_tag Clone 8888630 8888633 . + . Note "left end: T27B12" CHROMOSOME_I assembly_tag Clone 8904135 8904138 . + . Note "left end: T08G11" CHROMOSOME_I assembly_tag Clone 8904135 8904138 . + . Note "left end: T08G11" CHROMOSOME_I assembly_tag Finished 8904135 8904138 . + . Note "Left: T08G11" CHROMOSOME_I assembly_tag Finished 8904237 8904240 . - . Note "Right: F55H12" CHROMOSOME_I assembly_tag Clone 8909547 8909550 . - . Note "right end: F55H12" CHROMOSOME_I assembly_tag Clone 8922555 8922558 . - . Note "right end: T27B12" CHROMOSOME_I assembly_tag Finished 8934949 8934952 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8934949 8934952 . + . Note "left end: F53B6" CHROMOSOME_I assembly_tag Clone 8934949 8934952 . + . Note "left end: F53B6" CHROMOSOME_I assembly_tag Finished 8935050 8935053 . - . Note "Right: T08G11" CHROMOSOME_I assembly_tag Clone 8942932 8942935 . - . Note "right end: T08G11" CHROMOSOME_I assembly_tag annotation 8957538 8957544 . + . Note "Going with largest number which\nis 7 A's." CHROMOSOME_I assembly_tag Clone 8967254 8967257 . + . Note "left end: F32H2" CHROMOSOME_I assembly_tag Finished 8967254 8967257 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8967254 8967257 . + . Note "left end: F32H2" CHROMOSOME_I assembly_tag Finished 8967356 8967360 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8972366 8972369 . - . Note "right end: F53B6" CHROMOSOME_I assembly_tag Finished 9008022 9008026 . + . Note "Left: F36F2" CHROMOSOME_I assembly_tag Clone 9008129 9008132 . - . Note "right end: F32H2" CHROMOSOME_I assembly_tag Finished 9008129 9008132 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 9008129 9008132 . - . Note "right end: F32H2" CHROMOSOME_I assembly_tag Clone 9030659 9030662 . + . Note "left end: C31H5" CHROMOSOME_I assembly_tag Clone 9030659 9030662 . + . Note "left end: C31H5" CHROMOSOME_I assembly_tag Finished 9030659 9030662 . + . Note "Left: C31H5" CHROMOSOME_I assembly_tag Finished 9030765 9030768 . - . Note "Right: F36F2" CHROMOSOME_I assembly_tag Clone 9040678 9040681 . + . Note "right end: F36F2" CHROMOSOME_I assembly_tag annotation 9058126 9058129 . + . Note "W06D4 (chimeric clone) diverges here.\n" CHROMOSOME_I assembly_tag Clone 9058126 9058129 . + . Note "left end: W06D4" CHROMOSOME_I assembly_tag Finished 9058126 9058129 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 9058126 9058129 . + . Note "Left: W06D4\n" CHROMOSOME_I assembly_tag comment 9058126 9058149 . - . Note "?diverges from C31H5" CHROMOSOME_I assembly_tag Finished 9058225 9058230 . - . Note "Right: C31H5" CHROMOSOME_I assembly_tag annotation 9060496 9060507 . - . Note "some m13s read 11 As, rather than 12\nhere." CHROMOSOME_I assembly_tag annotation 9063167 9063275 . + . Note "single m13 clone confirmed by \nrestriction digest with HindIII.\nbase accuracy not guarenteed." CHROMOSOME_I assembly_tag repeat 9063233 9063270 . - . Note "Repeats with contig ua17c6.s1t, offset 16274\n" CHROMOSOME_I assembly_tag repeat 9063291 9063321 . - . Note "Repeats with contig ua17c6.s1t, offset 16332\n" CHROMOSOME_I assembly_tag annotation 9063338 9063363 . + . Note "single m13 clone confirmed by\nrestriction digest with HindIII.\nbase accuracy not guarenteed." CHROMOSOME_I assembly_tag repeat 9065970 9066007 . - . Note "Repeats with contig ua17c6.s1t, offset 13537\n" CHROMOSOME_I assembly_tag repeat 9066028 9066058 . - . Note "Repeats with contig ua17c6.s1t, offset 13595\n" CHROMOSOME_I assembly_tag annotation 9070832 9070836 . + . Note "single M13 clone.\nbase accuracy not guarenteed." CHROMOSOME_I assembly_tag repeat 9073290 9073318 . - . Note "Repeats with contig ua17c6.s1t, offset 23913\n" CHROMOSOME_I assembly_tag repeat 9073290 9073323 . - . Note "Repeats with contig ua17c6.s1t, offset 23594\n" CHROMOSOME_I assembly_tag repeat 9073295 9073327 . - . Note "Repeats with contig ua17c6.s1t, offset 23913\n" CHROMOSOME_I assembly_tag repeat 9073609 9073637 . - . Note "Repeats with contig ua17c6.s1t, offset 23594\n" CHROMOSOME_I assembly_tag repeat 9073609 9073641 . - . Note "Repeats with contig ua17c6.s1t, offset 23599\n" CHROMOSOME_I assembly_tag oligo 9075618 9075640 . + . Note "serial#=W06D4.5\nsequence=GAGTTTCAAAAACCTGATAATAG\nflags=\n" CHROMOSOME_I assembly_tag Finished 9075661 9075664 . + . Note "Left: T06D10" CHROMOSOME_I assembly_tag cosmid 9075752 9075764 . + . Note "vector: " CHROMOSOME_I assembly_tag cosmid 9075756 9075758 . - . Note "vector: " CHROMOSOME_I assembly_tag cosmid 9075751 9075764 . - . Note "vector: " CHROMOSOME_I assembly_tag Finished 9075760 9075764 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 9075761 9075764 . - . Note "right end: W06D4 " CHROMOSOME_I assembly_tag annotation 9088866 9088944 . + . Note "First select a Feature -\n[ ] Unsure\n[x ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived\nfrom single sonicated pUC clone\n" CHROMOSOME_I assembly_tag annotation 9088945 9088986 . + . Note "First select a Feature -\n[ ] Unsure\n[x ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived\nfrom single sonicated pUC clone\n" CHROMOSOME_I assembly_tag annotation 9088986 9088998 . + . Note "First select a Feature -\n[ ] Unsure\n[x ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived\nfrom single sonicated pUC clone\n" CHROMOSOME_I assembly_tag annotation 9088998 9088999 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived \nfrom single sonicated puc read\n" CHROMOSOME_I assembly_tag Clone 9097122 9097127 . + . Note "left end: W10D5" CHROMOSOME_I assembly_tag Finished 9097122 9097127 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9097122 9097127 . + . Note "left end: W10D5" CHROMOSOME_I assembly_tag Finished 9097222 9097225 . - . Note "Right: T06D10" CHROMOSOME_I assembly_tag Finished 9118746 9118749 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9118746 9118749 . + . Note "left end: ZK858" CHROMOSOME_I assembly_tag Clone 9118746 9118749 . + . Note "left end: ZK858" CHROMOSOME_I assembly_tag Finished 9118848 9118854 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 9134558 9134561 . - . Note "right end: W10D5" CHROMOSOME_I assembly_tag Finished 9156990 9156993 . + . Note "Left: H32K16" CHROMOSOME_I assembly_tag Clone 9157088 9157091 . + . Note "right end: ZK858" CHROMOSOME_I assembly_tag Clone 9157088 9157091 . - . Note "right end: ZK858" CHROMOSOME_I assembly_tag Finished 9157088 9157091 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 9160411 9160411 . + . Note "1 clone says A, 8 clones say G." CHROMOSOME_I assembly_tag Finished 9162934 9162934 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9162934 9162937 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 9162934 9162937 . - . Note "left end: F25H5" CHROMOSOME_I assembly_tag Finished 9163034 9163037 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9177969 9178165 . - . Note "single read (primer and term sequenced)\nonly covers this region which \nconstitutes the loop of an inverted \nrepeat" CHROMOSOME_I assembly_tag Finished 9201521 9201524 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9201622 9201625 . - . Note "left end: " CHROMOSOME_I assembly_tag Clone 9201622 9201625 . - . Note "right end: F25H5" CHROMOSOME_I assembly_tag Finished 9201625 9201625 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9213326 9213408 . + . Note "TA repeat. Number of TAs unconfirmed.\nSome M13 subclones have deleted." CHROMOSOME_I assembly_tag Finished 9237551 9237554 . + . Note "Left: VF36H2L" CHROMOSOME_I assembly_tag Finished 9237651 9237654 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9237651 9237654 . + . Note "right end: C45G3 clone right" CHROMOSOME_I assembly_tag Clone 9237651 9237654 . + . Note "right end: C45G3" CHROMOSOME_I assembly_tag Finished 9243601 9243601 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9243601 9243604 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 9243601 9243604 . + . Note "left end: F36H2" CHROMOSOME_I assembly_tag Finished 9243701 9243704 . + . Note "Right: VF36H2L" CHROMOSOME_I assembly_tag annotation 9250698 9250720 . + . Note "probably run of 21 Gs, but dificult\nto be 100% sure as clear run only\nexists on single read" CHROMOSOME_I assembly_tag Finished 9274457 9274457 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9274457 9274460 . + . Note "left end: Left hand end of F14B4." CHROMOSOME_I assembly_tag Clone 9274457 9274460 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9274560 9274560 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9283985 9283988 . + . Note "right end: Right hand end of F36H2." CHROMOSOME_I assembly_tag Finished 9295545 9295545 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9295545 9295548 . + . Note "left end: Left hand end of F26H9." CHROMOSOME_I assembly_tag Clone 9295545 9295548 . + . Note "left end: Left hand end of F26H9." CHROMOSOME_I assembly_tag Finished 9295645 9295645 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9307579 9307582 . - . Note "right end: Right hand end of F14B4." CHROMOSOME_I assembly_tag annotation 9315469 9315546 . + . Note "?" CHROMOSOME_I assembly_tag annotation 9315484 9315484 . + . Note "base pair difference in pcr product" CHROMOSOME_I assembly_tag annotation 9315519 9315519 . + . Note "base pair difference in pcr product" CHROMOSOME_I assembly_tag Finished 9327697 9327700 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9327697 9327700 . - . Note "left end: " CHROMOSOME_I assembly_tag Clone 9327697 9327700 . - . Note "left end: C12C8 clone left" CHROMOSOME_I assembly_tag Finished 9327807 9327807 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9331684 9331687 . + . Note "right end: F26H9 clone right" CHROMOSOME_I assembly_tag Finished 9351267 9351267 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9351267 9351270 . + . Note "left end: M04C9 clone left" CHROMOSOME_I assembly_tag Clone 9351267 9351270 . + . Note "left end: M04C9 " CHROMOSOME_I assembly_tag Finished 9351367 9351370 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9354831 9355242 . + . Note "area covered by single read within\nlarge inverted repeat" CHROMOSOME_I assembly_tag annotation 9355815 9355815 . + . Note "single read has an A > G mutation" CHROMOSOME_I assembly_tag Clone 9370122 9370125 . + . Note "right end: C12C8" CHROMOSOME_I assembly_tag Finished 9382527 9382527 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9382527 9382530 . + . Note "left end: F16A11" CHROMOSOME_I assembly_tag Clone 9382527 9382530 . + . Note "left end: F16A11" CHROMOSOME_I assembly_tag Finished 9382629 9382629 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9390221 9390224 . + . Note "right end: M04C9" CHROMOSOME_I assembly_tag annotation 9391177 9391177 . + . Note "high background suggests that this\nbase may be a T, but all other Cs\nthrough this run have high T background\nso it is more likely that this base\nis infact a T" CHROMOSOME_I assembly_tag annotation 9391218 9391218 . + . Note "single read has point-mutation G > T" CHROMOSOME_I assembly_tag annotation 9392909 9392933 . + . Note "25 bases within arm of inverted repeat with only a single clone." CHROMOSOME_I assembly_tag annotation 9407626 9407626 . + . Note "single read has G deleted" CHROMOSOME_I assembly_tag Finished 9413050 9413050 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9413050 9413053 . + . Note "left end: C17E4" CHROMOSOME_I assembly_tag Clone 9413050 9413053 . - . Note "left end: C17E4" CHROMOSOME_I assembly_tag Finished 9413152 9413152 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9418704 9418707 . + . Note "right end: F16A11" CHROMOSOME_I assembly_tag annotation 9447065 9447067 . + . Note "this trace only had sequence ggtc" CHROMOSOME_I assembly_tag Finished 9450171 9450171 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9450171 9450174 . + . Note "left end: F46A9 clone left" CHROMOSOME_I assembly_tag Clone 9450171 9450174 . - . Note "left end: F46A9 clone left" CHROMOSOME_I assembly_tag Finished 9450274 9450274 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9454615 9454618 . + . Note "right end: last read of C17E4 in database. True\ncloning site for this cosmid is\nunknown" CHROMOSOME_I assembly_tag comment 9474214 9474236 . + . Note "long gel td22a2\ntd26b6\nif not work then oligo" CHROMOSOME_I assembly_tag annotation 9475701 9475701 . + . Note "This region is covered with 2 reads, an\nm13 subclone and a pcr product. Both \ntemplates disagree at this point with \nthe pcr product showing a TT > GT\nchange which has been edited \nto the sequence of the m13 clone." CHROMOSOME_I assembly_tag annotation 9475788 9475795 . + . Note "This 8 bp region within the loop of an inverted repeat is covered by a \nsingle template only" CHROMOSOME_I assembly_tag Finished 9479933 9479933 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9479933 9479936 . + . Note "left end: F30A10 clone left end" CHROMOSOME_I assembly_tag Clone 9479933 9479936 . + . Note "left end: F30A10 clone left" CHROMOSOME_I assembly_tag Finished 9480037 9480037 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9494931 9494934 . - . Note "right end: F46A9 clone right" CHROMOSOME_I assembly_tag annotation 9514193 9514193 . + . Note "area covered by cosmid pcrs. Walks in\nboth directions, but A is not visible \non the + strand (more than 1 pcr \nproduct), which is quite far\naway from oligo start point. 3 reads \n(2 different pcrs) all show clear A on\nnegative strand." CHROMOSOME_I assembly_tag annotation 9514402 9514402 . + . Note "single read mutated from c to a t\nhas been edited to the majority" CHROMOSOME_I assembly_tag Finished 9516999 9516999 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9516999 9517002 . + . Note "left end: C41G7 clone left" CHROMOSOME_I assembly_tag Clone 9516999 9517002 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 9516999 9517002 . + . Note "left end: C41G7" CHROMOSOME_I assembly_tag Finished 9517102 9517102 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9517691 9517694 . + . Note "right end: " CHROMOSOME_I assembly_tag Clone 9517347 9517694 . - . Note "right end: F30A10 clone right" CHROMOSOME_I assembly_tag Finished 9545917 9545917 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9545917 9545920 . + . Note "left end: C36F7" CHROMOSOME_I assembly_tag Clone 9545917 9545920 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 9545917 9545920 . + . Note "left end: C36F7" CHROMOSOME_I assembly_tag Finished 9546019 9546019 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9553685 9553687 . + . Note "single read shows 4Cs, but this looks\nas if it is a sequencing artifact.\nAll other reads (some terms and \nprimers) show 3 Cs)" CHROMOSOME_I assembly_tag annotation 9554644 9554647 . + . Note "reads have the spacing of 4 Gs, but no read clearly defines 4 G peaks.\nPrimer and terminator reads have\nbeen tried. Terminator data is\nTaqFS. We have been unable to confirm\nwith "old" Taq terms." CHROMOSOME_I assembly_tag Clone 9560356 9560359 . + . Note "right end: C41G7" CHROMOSOME_I assembly_tag annotation 9564453 9564456 . + . Note "Foreard primer reads on both strandsgive a clear GAGAAA sequence withno sign of any compression or expansionA single positive TaqFs terminator agreesHowever, all -ve terminators show a"compression" of the second G overthe As, and a following expansion.This is true with both Taq and TaqFs" CHROMOSOME_I assembly_tag annotation 9567363 9567363 . + . Note "single read has point mutation\nT > G" CHROMOSOME_I assembly_tag Finished 9585020 9585020 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9585124 9585127 . + . Note "right end: " CHROMOSOME_I assembly_tag Clone 9585124 9585127 . + . Note "right end: C36F7" CHROMOSOME_I assembly_tag Finished 9585127 9585127 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9586262 9586262 . + . Note "this clone has a point mutation with one of the t's being deleted it has been\nedited to the majority ie; tt." CHROMOSOME_I assembly_tag annotation 9588452 9588452 . + . Note "the traces for clones tk32c7.s1 and tk38f1.s1t have been called with three\ng's all other traces (terminators and primers) show 2 g's so they have been edited to the majority" CHROMOSOME_I assembly_tag Finished 9588637 9588637 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9588637 9588640 . + . Note "left end: K07A1" CHROMOSOME_I assembly_tag Clone 9588637 9588640 . - . Note "right end: K07A1" CHROMOSOME_I assembly_tag Finished 9588741 9588741 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9605144 9605147 . - . Note "right end: F42H11" CHROMOSOME_I assembly_tag Finished 9627623 9627626 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9627719 9627722 . + . Note "right end: K07A1" CHROMOSOME_I assembly_tag Clone 9627719 9627722 . + . Note "right end: K07A1" CHROMOSOME_I assembly_tag Finished 9627722 9627722 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9628222 9628225 . + . Note "left end: T05F1" CHROMOSOME_I assembly_tag Finished 9628222 9628225 . - . Note "Left: " CHROMOSOME_I assembly_tag Clone 9628222 9628225 . - . Note "left end: T05F1" CHROMOSOME_I assembly_tag Finished 9628318 9628321 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9644901 9645789 . - . Note "21 copies of 44bp tandem repeat. The restriction digest suggests\nthere are 19 copies missing from this assembly." CHROMOSOME_I assembly_tag Finished 9664877 9664880 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9664977 9664980 . + . Note "right end: T05F1" CHROMOSOME_I assembly_tag Finished 9664977 9664980 . - . Note "Right: T05F1" CHROMOSOME_I assembly_tag Clone 9664977 9664980 . - . Note "right end: T05F1" CHROMOSOME_I assembly_tag Clone 9677892 9677895 . + . Note "left end: C04F12" CHROMOSOME_I assembly_tag Finished 9680286 9680289 . + . Note "Left: C04F12" CHROMOSOME_I assembly_tag Clone 9680382 9680385 . + . Note "right end: C03D6" CHROMOSOME_I assembly_tag Finished 9680382 9680385 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9680382 9680385 . - . Note "right end: C03D6" CHROMOSOME_I assembly_tag Clone 9717423 9717426 . - . Note "left end: C16C2" CHROMOSOME_I assembly_tag Finished 9720949 9720952 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 9721049 9721052 . + . Note "Right: C04F12" CHROMOSOME_I assembly_tag Clone 9721049 9721052 . + . Note "right end: C04F12" CHROMOSOME_I assembly_tag Clone 9721049 9721052 . - . Note "right end: C04F12 clone left end" CHROMOSOME_I assembly_tag Finished 9742761 9742761 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9742761 9742764 . + . Note "left end: K02A11" CHROMOSOME_I assembly_tag Clone 9742761 9742764 . - . Note "left end: K02A11 clone left" CHROMOSOME_I assembly_tag Finished 9742862 9742865 . + . Note "Right: " CHROMOSOME_I assembly_tag Finished 9762911 9762911 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9762911 9762914 . + . Note "left end: F26E4" CHROMOSOME_I assembly_tag Clone 9762911 9762914 . + . Note "left end: F26E4" CHROMOSOME_I assembly_tag Finished 9763010 9763010 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9766343 9766345 . + . Note "Point mutation ATTT > AGTT" CHROMOSOME_I assembly_tag Clone 9776490 9776493 . + . Note "right end: K02A11" CHROMOSOME_I assembly_tag annotation 9780778 9780780 . + . Note "single term on -ve strand looks\nto have 4 Cs but other data, \nincluding primer and terminator \nreads on both strands show 3 clear\nCs only, so we assume that one read\nis showing some gel/sequencing artifact" CHROMOSOME_I assembly_tag Clone 9790123 9790126 . + . Note "left end: F35C12" CHROMOSOME_I assembly_tag annotation 9801537 9801545 . + . Note "single m13 read over these 9 bases,\nare confirmed by pcr, but confirmatory\ndata is weak" CHROMOSOME_I assembly_tag Finished 9803207 9803207 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9803307 9803310 . + . Note "right end: F26E4" CHROMOSOME_I assembly_tag Clone 9803307 9803310 . - . Note "right end: F26E4" CHROMOSOME_I assembly_tag Finished 9803310 9803310 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9812009 9812023 . + . Note "single read has 16 Cs at this point" CHROMOSOME_I assembly_tag annotation 9813486 9813486 . + . Note "single read shows GG, but all others\n(with primer and terminator chemistry)\nshow a clear single G." CHROMOSOME_I assembly_tag annotation 9814851 9815006 . - . Note "unknown/unstable run of CTs. \nSize is approximately correct within \nthe accuracy of restriction digests" CHROMOSOME_I assembly_tag annotation 9816619 9816619 . + . Note "single read shows 2Gs here, but on\nresequencing with terminators shows\na clear single G, so we assume the\nGG is a gel artifact" CHROMOSOME_I assembly_tag annotation 9818619 9818619 . + . Note "single read shows point mutation T > A" CHROMOSOME_I assembly_tag annotation 9819710 9819842 . + . Note "part of arm of inverted repeat\nhas a single read only" CHROMOSOME_I assembly_tag Finished 9823462 9823465 . + . Note "Left: Y67A6A" CHROMOSOME_I assembly_tag Clone 9823558 9823561 . + . Note "right end: F35C12" CHROMOSOME_I assembly_tag Clone 9823558 9823561 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 9823561 9823561 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9824880 9827781 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 15 copies of a 200 bp repeat typical sequence:TTATATACAAAATTAATAGATTTTCCAAACTTTGAAAATTAATTTCTGGCTTCAAACTAACTTTTTTAGAAATTCCCGTAGCCATTTTGTAGCAAATTTTATGTTCTTTCAGAATTTGAAAACAGAATTTTAAAAAATTTCGAAACCGCCAAGTTCAAGCAGAAAAAGTGAATTTTCAGTCATACCTTGTAGACCACAATSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9827884 9828393 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 16 copies of a 30 bp repeat, typical sequence:TCACCACGATGGGTCTAACCACGATGGGTCSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9828597 9829370 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 6 copies of a 121 bp repeat typical sequence:CCCGACCACGTCCCACCACTAACCTCAAACCAATATCCCTTCAAAAGACGAAAAGTCAATTTTTCCCAAACTACAGTAATCCTACAGTACTCCTACAGTACCTCTACAGTACTACTACAGTACSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9829487 9831014 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 23 copies of a 66 bp repeat, typical sequence:CCCGACCACATCCCACCACTAACCTCAAACCAATATCTCTTCAAAAGGCGAAAAGTCAATTTTTCCTAAACTACAGTAATCCTACAGTACTCCTACAGTACCACTACAGTACTACTACAGTACSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9832974 9832974 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nOne clone has deleted this "G", 6 clones\nhave this "G" present." CHROMOSOME_I assembly_tag annotation 9846082 9846082 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nOne clone has deleted this "C", 5 clones \nhave this "C" present." CHROMOSOME_I assembly_tag Clone 9850547 9850550 . + . Note "left end: K10C3" CHROMOSOME_I assembly_tag Clone 9850547 9850550 . + . Note "left end: k10C3" CHROMOSOME_I assembly_tag Finished 9850547 9850550 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 9850643 9850646 . + . Note "Right: Y67A6A" CHROMOSOME_I assembly_tag Finished 9884225 9884228 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9884225 9884228 . + . Note "left end: T23H4" CHROMOSOME_I assembly_tag Clone 9884225 9884228 . + . Note "left end: T23H4" CHROMOSOME_I assembly_tag Finished 9884325 9884328 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 9896439 9896442 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9896439 9896442 . - . Note "left end: F52F12" CHROMOSOME_I assembly_tag Clone 9896439 9896442 . - . Note "left end: F52F12" CHROMOSOME_I assembly_tag Finished 9896539 9896542 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9919868 9919871 . + . Note "right end: T23H4" CHROMOSOME_I assembly_tag Finished 9939483 9939485 . + . Note "Left: Y106G6A" CHROMOSOME_I assembly_tag Clone 9939583 9939586 . + . Note "right end: F52F12" CHROMOSOME_I assembly_tag Finished 9939583 9939586 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9939583 9939586 . + . Note "right end: F52F12" CHROMOSOME_I assembly_tag annotation 9943894 9944258 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -light shotgun but single clone is sequenced as a terminator and sequence isunambiguous" CHROMOSOME_I assembly_tag annotation 9944315 9944407 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone sequenced with ABD Big Dye Terminators. Sequence is unambiguous." CHROMOSOME_I assembly_tag annotation 9944888 9945172 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone sequenced with ABD Big DyeTerminators. Sequence is unambiguous." CHROMOSOME_I assembly_tag Clone 9951396 9951399 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9951396 9951399 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 9951495 9951498 . + . Note "Right: Y106G6A" CHROMOSOME_I assembly_tag Clone 9970906 9970909 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9970906 9970909 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9970906 9970909 . + . Note "left end: T23D8" CHROMOSOME_I assembly_tag Finished 9971006 9971009 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9983651 9983654 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 10005378 10005381 . + . Note "Left: Y106G6B" CHROMOSOME_I assembly_tag Finished 10005478 10005481 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 10005478 10005481 . + . Note "right end: " CHROMOSOME_I assembly_tag Clone 10007368 10007371 . + . Note "left end: C03C11" CHROMOSOME_I assembly_tag Finished 10007368 10007371 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 10007368 10007371 . + . Note "left end: C03C11" CHROMOSOME_I assembly_tag Finished 10007468 10007471 . + . Note "Right: Y106G6B" CHROMOSOME_I assembly_tag Clone 10026434 10026436 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 10026434 10026437 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 10026434 10026437 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 10026434 10026437 . + . Note "left end: F10G8" CHROMOSOME_I assembly_tag Finished 10026534 10026537 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 10046677 10046680 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 10061450 10061453 . + . Note "Left: Y106G6C" CHROMOSOME_I assembly_tag Clone 10061551 10061554 . + . Note "right end: F10G8" CHROMOSOME_I assembly_tag Finished 10061551 10061554 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 10061551 10061554 . + . Note "right end: " CHROMOSOME_I assembly_tag annotation 10064409 10064482 . + . Note "single clone - base calling confirmed by 2 different sequencing chemistries" CHROMOSOME_I assembly_tag annotation 10072107 10072218 . + . Note "single clone over this region, in \ninverted repeat region" CHROMOSOME_I assembly_tag Clone 10074745 10074748 . + . Note "left end: B0379\nNo overlap on either side." CHROMOSOME_I assembly_tag Clone 10074745 10074748 . + . Note "left end: B0379" CHROMOSOME_I assembly_tag Finished 10074745 10074748 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 10074845 10074848 . + . Note "Right: Y106G6C" CHROMOSOME_I assembly_tag annotation 10094306 10094324 . + . Note "Number of Gs may not be accurate." CHROMOSOME_I assembly_tag annotation 10110273 10110392 . + . Note "Number of AGs varies in different\nM13 clones, so edited number may\nnot be accurate." CHROMOSOME_I assembly_tag Finished 10114980 10114983 . + . Note "Left: Y106G6D" CHROMOSOME_I assembly_tag Finished 10115080 10115083 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 10115080 10115083 . + . Note "right end: B0379\nno overlap on either side" CHROMOSOME_I assembly_tag Clone 10115080 10115083 . + . Note "right end: B0379" CHROMOSOME_I assembly_tag annotation 10134140 10134321 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsingle sonicated clone in inverted \nrepeat region\n" CHROMOSOME_I assembly_tag Clone 10150433 10150436 . + . Note "left end: F16C3\n" CHROMOSOME_I assembly_tag Clone 10150433 10150436 . + . Note "left end: F16C3" CHROMOSOME_I assembly_tag Finished 10150433 10150436 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 10150533 10150536 . + . Note "Right: Y106G6D" CHROMOSOME_I assembly_tag Finished 10167257 10167260 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 10167257 10167260 . + . Note "left end: C25A1" CHROMOSOME_I assembly_tag Clone 10167257 10167260 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 10167357 10167360 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 10190508 10190511 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 10207750 10207753 . + . Note "Left: Y106G6E" CHROMOSOME_I assembly_tag Clone 10207850 10207853 . + . Note "right end: C25A1" CHROMOSOME_I assembly_tag Clone 10207850 10207853 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 10207850 10207853 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 10212177 10227243 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat (typical repeat element ATTGTCAACTGAATAGGTTGATTTGTGTTTTCTTTAAAATTTTTAAAAATTTGGTAAAAGAAAACC). Size unknown." CHROMOSOME_I assembly_tag annotation 10233467 10233564 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 10237695 10237861 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 10237789 10237789 . + . Note "G->A based on Thierry-Mieg EST analysis" CHROMOSOME_I assembly_tag annotation 10237794 10237794 . + . Note "C->G based on Thierry-Mieg EST analysis" CHROMOSOME_I assembly_tag annotation 10237800 10237800 . + . Note "A->T based on Thierry-Mieg EST analysis" CHROMOSOME_I assembly_tag annotation 10237827 10237827 . + . Note "A->T based on Thierry-Mieg EST analysis" CHROMOSOME_I assembly_tag annotation 10241682 10242116 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsingle sonicated clone" CHROMOSOME_I assembly_tag Clone 10245348 10245353 . + . Note "left end: ZC247" CHROMOSOME_I assembly_tag Finished 10245450 10245453 . + . Note "Right: Y106G6E" CHROMOSOME_I assembly_tag Finished 10279565 10279568 . + . Note "Left: Y106G6F" CHROMOSOME_I assembly_tag Clone 10279663 10279668 . + . Note "right end: ZC247" CHROMOSOME_I assembly_tag annotation 10279741 10279749 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -tandem repeat region which includes ZC247,T02F9 and T20F10. Not sized." CHROMOSOME_I assembly_tag Clone 10280083 10280086 . + . Note "left end: T20F10" CHROMOSOME_I assembly_tag Finished 10280083 10280086 . + . Note "Left: T20F10" CHROMOSOME_I assembly_tag Clone 10280083 10280086 . + . Note "left end: T20F10" CHROMOSOME_I assembly_tag Finished 10280184 10280187 . + . Note "Right: Y106G6F" CHROMOSOME_I assembly_tag annotation 10280083 10285102 . - . Note "231 base tandem repeat. Digest with \nBsp1286 and HindIII shows 19/20\ncopies are missing from this assembly" CHROMOSOME_I assembly_tag Finished 10317087 10317090 . + . Note "Left: Y106G6G" CHROMOSOME_I assembly_tag Clone 10317187 10317190 . + . Note "right end: T20F10" CHROMOSOME_I assembly_tag Finished 10317187 10317190 . - . Note "Right: T20F10" CHROMOSOME_I assembly_tag Clone 10317187 10317190 . - . Note "right end: T20F10" CHROMOSOME_I assembly_tag annotation 10336677 10337224 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 10337225 10337230 . + . Note "left end: START OF ZC434" CHROMOSOME_I assembly_tag Finished 10337225 10337230 . + . Note "Left: ZC434" CHROMOSOME_I assembly_tag Clone 10337225 10337230 . + . Note "left end: ZC434" CHROMOSOME_I assembly_tag Finished 10337327 10337330 . + . Note "Right: Y106G6G" CHROMOSOME_I assembly_tag Finished 10368652 10368655 . + . Note "Left: F45H11" CHROMOSOME_I assembly_tag Clone 10368652 10368655 . + . Note "left end: F45H11 beginning" CHROMOSOME_I assembly_tag Clone 10368652 10368655 . + . Note "left end: START OF F45H11" CHROMOSOME_I assembly_tag Finished 10368752 10368755 . + . Note "Right: ZC434" CHROMOSOME_I assembly_tag Clone 10373821 10373826 . + . Note "right end: ZC434" CHROMOSOME_I assembly_tag Clone 10398822 10398825 . + . Note "left end: F25D7" CHROMOSOME_I assembly_tag Finished 10398822 10398825 . + . Note "Left: F25D7" CHROMOSOME_I assembly_tag Clone 10398822 10398825 . + . Note "left end: F25D7" CHROMOSOME_I assembly_tag Finished 10398922 10398925 . + . Note "Right: F45H11" CHROMOSOME_I assembly_tag Clone 10409183 10409186 . + . Note "right end: F45H11" CHROMOSOME_I assembly_tag Finished 10435208 10435211 . + . Note "Left: Y106G6H" CHROMOSOME_I assembly_tag Clone 10435308 10435311 . + . Note "right end: F25D7" CHROMOSOME_I assembly_tag Finished 10435308 10435311 . + . Note "Right: F25D7" CHROMOSOME_I assembly_tag Clone 10435308 10435311 . + . Note "right end: F25D7" CHROMOSOME_I assembly_tag Clone 10470816 10470819 . - . Note "right end: T01A9" CHROMOSOME_I assembly_tag annotation 10470848 10470854 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -forced join in tandem repeat region of unspecified size. Typical repeat elementGGGTAGCTCCTGATGATCTGATCCTTCAGCTTCGAAGGATCACAA (45-mer)" CHROMOSOME_I assembly_tag Clone 10483717 10483720 . + . Note "left end: F37D6" CHROMOSOME_I assembly_tag Clone 10483717 10483720 . + . Note "left end: F37D6" CHROMOSOME_I assembly_tag Finished 10483717 10483720 . + . Note "Left: F37D6" CHROMOSOME_I assembly_tag Finished 10483817 10483820 . + . Note "Right: Y106G6H" CHROMOSOME_I assembly_tag annotation 10487454 10487456 . + . Note "sa53g5 has only 3 A's" CHROMOSOME_I assembly_tag annotation 10509913 10509915 . + . Note "sa48b11 has only 11 T's; the other reads have 12" CHROMOSOME_I assembly_tag Clone 10512976 10512979 . + . Note "left end: Start of F59C6" CHROMOSOME_I assembly_tag Finished 10512976 10512979 . + . Note "Left: F59C6" CHROMOSOME_I assembly_tag Clone 10512976 10512979 . + . Note "left end: F59C6" CHROMOSOME_I assembly_tag Finished 10513076 10513079 . + . Note "Right: F37D6" CHROMOSOME_I assembly_tag Clone 10522882 10522885 . + . Note "right end: END OF F37D6" CHROMOSOME_I assembly_tag Clone 10541957 10541960 . + . Note "left end: START OF F25H2" CHROMOSOME_I assembly_tag Finished 10541957 10541960 . + . Note "Left: F25H2" CHROMOSOME_I assembly_tag Clone 10541957 10541960 . - . Note "left end: START OF F25H2" CHROMOSOME_I assembly_tag Finished 10542057 10542060 . + . Note "Right: F59C6" CHROMOSOME_I assembly_tag Clone 10552656 10552659 . - . Note "right end: END OF F59C6" CHROMOSOME_I assembly_tag Finished 10584219 10584222 . + . Note "Left: F29C6" CHROMOSOME_I assembly_tag Finished 10584319 10584322 . + . Note "Right: F25H2" CHROMOSOME_I assembly_tag Clone 10584319 10584322 . + . Note "right end: END OF F25H2" CHROMOSOME_I assembly_tag Finished 10584319 10584322 . + . Note "Right: F25H2" CHROMOSOME_I assembly_tag Clone 10584319 10584322 . - . Note "right end: END OF F25H2" CHROMOSOME_I assembly_tag Clone 10587615 10587618 . + . Note "left end: T22A3" CHROMOSOME_I assembly_tag Finished 10587615 10587618 . + . Note "Left: T22A3" CHROMOSOME_I assembly_tag Clone 10587615 10587618 . - . Note "left end: START OF T22A3" CHROMOSOME_I assembly_tag Finished 10587715 10587718 . - . Note "Right: F29C6" CHROMOSOME_I assembly_tag annotation 10602163 10602163 . + . Note "uncertain" CHROMOSOME_I assembly_tag Clone 10607291 10607294 . + . Note "right end: F29C6" CHROMOSOME_I assembly_tag annotation 10612424 10612429 . + . Note "This join has been made in the tandem \nrepeat region (bases 23470 - 25210)\nand is not confirmed by any other\nreads. However, the size of the cosmid has been confirmed by restriction\ndigest." CHROMOSOME_I assembly_tag annotation 10618968 10618968 . + . Note "uncertain" CHROMOSOME_I assembly_tag Finished 10623562 10623565 . + . Note "Left: H10E24" CHROMOSOME_I assembly_tag Finished 10623662 10623665 . + . Note "Right: T22A3" CHROMOSOME_I assembly_tag Clone 10623662 10623665 . + . Note "right end: T22A3" CHROMOSOME_I assembly_tag Clone 10623662 10623665 . - . Note "right end: T22A3\n" CHROMOSOME_I assembly_tag annotation 10625849 10625882 . + . Note "This region is only covered with a single clone ss11a3. The assembly of this region has been confirmed with a restriction digest." CHROMOSOME_I assembly_tag CpG 10626167 10626172 . - . Note "Island: BAMHI\nG'GATCC 1\n" CHROMOSOME_I assembly_tag Clone 10627326 10627329 . + . Note "left end: C43H8\n" CHROMOSOME_I assembly_tag Finished 10627426 10627429 . + . Note "Right: H10E24" CHROMOSOME_I assembly_tag Finished 10970290 10970295 . + . Note "Left: Y52B11A" CHROMOSOME_I assembly_tag Clone 10970290 10970295 . + . Note "left end: Y52B11" CHROMOSOME_I assembly_tag annotation 10987838 10987856 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nY52B11 reads 19 Gs here,Y95D11 reads 18." CHROMOSOME_I assembly_tag Clone 11069589 11069594 . + . Note "left end: Y53H1" CHROMOSOME_I assembly_tag Clone 11077139 11077142 . + . Note "left end: W02B9" CHROMOSOME_I assembly_tag Clone 11077139 11077142 . + . Note "left end: W02B9" CHROMOSOME_I assembly_tag Finished 11077139 11077142 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11077234 11077238 . - . Note "Right: Y52B11A" CHROMOSOME_I assembly_tag Finished 11109254 11109257 . + . Note "Left: Y52B11B" CHROMOSOME_I assembly_tag Clone 11109348 11109353 . - . Note "right end: W02B9" CHROMOSOME_I assembly_tag Finished 11109348 11109353 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11109348 11109353 . - . Note "right end: W02B9" CHROMOSOME_I assembly_tag Clone 11134528 11134531 . + . Note "left end: ZK39" CHROMOSOME_I assembly_tag Finished 11134528 11134531 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11134528 11134531 . + . Note "left end: ZK39" CHROMOSOME_I assembly_tag Finished 11134626 11134630 . - . Note "Right: Y52B11B" CHROMOSOME_I assembly_tag Finished 11170521 11170528 . + . Note "Left: Y52B11C" CHROMOSOME_I assembly_tag Clone 11170617 11170620 . - . Note "right end: ZK39" CHROMOSOME_I assembly_tag Clone 11170617 11170620 . - . Note "right end: ZK39" CHROMOSOME_I assembly_tag Finished 11170617 11170620 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11178405 11178408 . + . Note "left end: F28D9" CHROMOSOME_I assembly_tag Clone 11178405 11178408 . + . Note "left end: F28D9" CHROMOSOME_I assembly_tag Finished 11178405 11178408 . + . Note "Left: F28D9" CHROMOSOME_I assembly_tag Finished 11178501 11178508 . - . Note "Right: Y52B11C" CHROMOSOME_I assembly_tag Clone 11194054 11194057 . + . Note "left end: W06H12" CHROMOSOME_I assembly_tag Finished 11212000 11212005 . + . Note "Left: W06H12" CHROMOSOME_I assembly_tag Finished 11212107 11212110 . - . Note "Right: F28D9" CHROMOSOME_I assembly_tag Clone 11212107 11212110 . - . Note "right end: F28D9" CHROMOSOME_I assembly_tag Clone 11212107 11212110 . - . Note "right end: F28D9" CHROMOSOME_I assembly_tag annotation 11212505 11212505 . + . Note "Y53H1 reads G, W06H12 reads A" CHROMOSOME_I assembly_tag Finished 11215890 11215893 . + . Note "Left: Y53H1A" CHROMOSOME_I assembly_tag Clone 11215988 11215991 . - . Note "right end: W06H12" CHROMOSOME_I assembly_tag Finished 11215988 11215991 . - . Note "Right: W06H12" CHROMOSOME_I assembly_tag Clone 11215988 11215991 . - . Note "right end: W06H12" CHROMOSOME_I assembly_tag annotation 11232056 11232087 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_I assembly_tag annotation 11242035 11242064 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat" CHROMOSOME_I assembly_tag Clone 11243749 11243752 . + . Note "left end: F46A8" CHROMOSOME_I assembly_tag Clone 11243749 11243752 . + . Note "left end: F46A8" CHROMOSOME_I assembly_tag Finished 11243749 11243752 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11243849 11243852 . - . Note "Right: Y53H1A" CHROMOSOME_I assembly_tag Finished 11260656 11260659 . + . Note "Left: F36D1" CHROMOSOME_I assembly_tag Clone 11260656 11260659 . + . Note "left end: F36D1" CHROMOSOME_I assembly_tag cosmid 11260656 11260659 . + . Note "vector: CAF:END=Left,Right::lorist6" CHROMOSOME_I assembly_tag Clone 11260656 11260659 . + . Note "left end: F36D1" CHROMOSOME_I assembly_tag Finished 11260756 11260763 . - . Note "Right: " CHROMOSOME_I assembly_tag oligo 11264628 11264644 . - . Note "serial#=\ntemplate=\nsequence=CGGTTTGATACTTGGTG\nflags=4.24" CHROMOSOME_I assembly_tag comment 11264655 11264669 . + . Note "diverges" CHROMOSOME_I assembly_tag oligo 11264762 11264778 . + . Note "serial#=\ntemplate=ua47h13\nsequence=GACTTGTGTGTGGAATG\nflags=5.24" CHROMOSOME_I assembly_tag oligo 11265060 11265076 . + . Note "serial#=\ntemplate=ua47h13\nsequence=AAAAACGGGGGGTACTG\nflags=6.24" CHROMOSOME_I assembly_tag oligo 11265366 11265383 . + . Note "serial#=\ntemplate=ua48a13\nsequence=GGTTGGTGGAAAAATTAC\nflags=8.24" CHROMOSOME_I assembly_tag comment 11265448 11265460 . - . Note "poor sequence data. poss diverges" CHROMOSOME_I assembly_tag comment 11265487 11265492 . - . Note "diverges" CHROMOSOME_I assembly_tag oligo 11265539 11265555 . - . Note "serial#=\ntemplate=ua48a13\nsequence=AAAGAAGGGGGTGAGAG\nflags=7.24" CHROMOSOME_I assembly_tag oligo 11265701 11265718 . + . Note "serial#=\ntemplate=ut63d6\nsequence=ATAAAAAGCAATCGGAGG\nflags=3.24" CHROMOSOME_I assembly_tag oligo 11265714 11265714 . + . CHROMOSOME_I assembly_tag oligo 11273820 11273836 . + . Note "2.24" CHROMOSOME_I assembly_tag oligo 11273985 11274002 . + . Note "1.24" CHROMOSOME_I assembly_tag Clone 11281204 11281207 . - . Note "right end: F46A8" CHROMOSOME_I assembly_tag oligo 11281654 11281671 . + . Note "serial#=\ntemplate=ut54f4\nsequence=TGAGAACACCTATTTTCC\nflags=10.24" CHROMOSOME_I assembly_tag oligo 11282495 11282512 . - . Note "serial#=\ntemplate=ua51h9\nsequence=GGCATGTAGAAATGTAGG\nflags=9.24" CHROMOSOME_I assembly_tag comment 11282692 11282711 . - . Note "not from same clone as ua51h9.s1ta" CHROMOSOME_I assembly_tag comment 11282851 11282867 . - . Note "forced join" CHROMOSOME_I assembly_tag oligo 11282996 11283015 . - . Note "serial#=\ntemplate=ua52e1\nsequence=GTATTTGCTACGAGTTTTTG\nflags=11.24" CHROMOSOME_I assembly_tag Finished 11300920 11300923 . + . Note "Left: Y53H1B" CHROMOSOME_I assembly_tag Clone 11301021 11301024 . - . Note "right end: F36D1" CHROMOSOME_I assembly_tag Clone 11301021 11301024 . - . Note "right end: F36D1" CHROMOSOME_I assembly_tag Finished 11301021 11301024 . - . Note "Right: F36D1" CHROMOSOME_I assembly_tag Clone 11313792 11313795 . + . Note "left end: H25P06" CHROMOSOME_I assembly_tag Finished 11313792 11313795 . + . Note "Left: H25P06" CHROMOSOME_I assembly_tag Clone 11313792 11313795 . + . Note "left end: H25P06" CHROMOSOME_I assembly_tag Finished 11313892 11313895 . - . Note "Right: Y53H1B" CHROMOSOME_I assembly_tag Clone 11334890 11334893 . + . Note "left end: M04D5" CHROMOSOME_I assembly_tag Finished 11334890 11334893 . + . Note "Left: M04D5" CHROMOSOME_I assembly_tag Clone 11334890 11334893 . + . Note "left end: M04D5" CHROMOSOME_I assembly_tag Finished 11334986 11334989 . - . Note "Right: H25P06" CHROMOSOME_I assembly_tag Clone 11351031 11351034 . - . Note "right end: H25P06" CHROMOSOME_I assembly_tag Finished 11353407 11353410 . + . Note "Left: F56G4" CHROMOSOME_I assembly_tag Clone 11353407 11353410 . + . Note "left end: F56G4" CHROMOSOME_I assembly_tag Clone 11353407 11353410 . + . Note "left end: F56G4" CHROMOSOME_I assembly_tag Clone 11372780 11372783 . - . Note "right end: M04D5" CHROMOSOME_I assembly_tag Finished 11391367 11391370 . + . Note "Left: Y53H1C " CHROMOSOME_I assembly_tag Clone 11391465 11391468 . - . Note "right end: F56G4" CHROMOSOME_I assembly_tag Finished 11391465 11391468 . - . Note "Right: F56G4" CHROMOSOME_I assembly_tag Clone 11391465 11391468 . - . Note "right end: F56G4" CHROMOSOME_I assembly_tag annotation 11392419 11394395 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[x] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\ntandem repeat of unknown length" CHROMOSOME_I assembly_tag Clone 11428266 11428269 . + . Note "left end: C27C7" CHROMOSOME_I assembly_tag Finished 11428268 11428271 . + . Note "Left: C27C7" CHROMOSOME_I assembly_tag Clone 11428268 11428271 . - . Note "left end: C27C7" CHROMOSOME_I assembly_tag Finished 11428367 11428370 . - . Note "Right: Y53H1C" CHROMOSOME_I assembly_tag Finished 11450385 11450388 . + . Note "Left: ZK1025" CHROMOSOME_I assembly_tag Clone 11450385 11450388 . + . Note "left end: ZK1025" CHROMOSOME_I assembly_tag Clone 11450385 11450388 . + . Note "left end: ZK1025" CHROMOSOME_I assembly_tag Finished 11450481 11450484 . - . Note "Right: C27C7" CHROMOSOME_I assembly_tag Clone 11468046 11468049 . - . Note "right end: C27C7" CHROMOSOME_I assembly_tag Clone 11468848 11468851 . + . Note "left end: K08C9" CHROMOSOME_I assembly_tag annotation 11468878 11469901 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -This 1024 base pair section is deleted in the overlapping clone K08C9. Confirmed by restriction digest." CHROMOSOME_I assembly_tag Finished 11490872 11490876 . + . Note "Left: K08C9" CHROMOSOME_I assembly_tag annotation 11490877 11507224 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -K08C9 has a 1024 base pair deletion 30 base pairs from its clone left end. Confirmed by restriction digest." CHROMOSOME_I assembly_tag Finished 11490970 11490973 . - . Note "Right: ZK1025" CHROMOSOME_I assembly_tag Clone 11490970 11490973 . - . Note "right end: ZK1025" CHROMOSOME_I assembly_tag Clone 11490970 11490973 . - . Note "right end: ZK1025" CHROMOSOME_I assembly_tag Clone 11507117 11507120 . + . Note "left end: F32B4\n" CHROMOSOME_I assembly_tag Clone 11507117 11507120 . + . Note "left end: F32B4" CHROMOSOME_I assembly_tag Finished 11507117 11507120 . + . Note "Left: F32B4" CHROMOSOME_I assembly_tag Finished 11507225 11507229 . - . Note "Right: K08C9" CHROMOSOME_I assembly_tag Clone 11511336 11511339 . - . Note "right end: K08C9" CHROMOSOME_I assembly_tag annotation 11534871 11534891 . + . Note "21 C's possible less, gone with largest\nnumber\n" CHROMOSOME_I assembly_tag Clone 11548222 11548225 . + . Note "left end: F15D3\n" CHROMOSOME_I assembly_tag Finished 11548222 11548225 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11548222 11548225 . + . Note "left end: F15D3 LHE" CHROMOSOME_I assembly_tag Finished 11548325 11548328 . - . Note "Right: F32B4" CHROMOSOME_I assembly_tag Clone 11554625 11554628 . - . Note "right end: F32B4" CHROMOSOME_I assembly_tag Clone 11590878 11590881 . + . Note "left end: C17D12" CHROMOSOME_I assembly_tag Finished 11590878 11590881 . + . Note "Left: C17D12" CHROMOSOME_I assembly_tag Clone 11590878 11590881 . - . Note "right end: F15D3\nOverlaps at GATC site" CHROMOSOME_I assembly_tag Clone 11590878 11590881 . - . Note "right end: F15D3\n" CHROMOSOME_I assembly_tag Finished 11590878 11590881 . - . Note "Right: " CHROMOSOME_I assembly_tag comment 11596429 11596449 . - . Note "?This shouldn't go here but it fits." CHROMOSOME_I assembly_tag comment 11610966 11610975 . - . Note "?do long term off this read" CHROMOSOME_I assembly_tag comment 11611333 11611338 . + . Note "?Named wrong." CHROMOSOME_I assembly_tag Warning 11612109 11612110 . - . Note ""POSSIBLY VECTOR: puc18 299 248 2686"" CHROMOSOME_I assembly_tag Warning 11613313 11613313 . + . Note ""POSSIBLY VECTOR: puc18 2623 2578 2686"" CHROMOSOME_I assembly_tag annotation 11613930 11613957 . + . Note "[ ] Tandem repeat \n[x] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_I assembly_tag annotation 11614321 11614321 . + . Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[x] Other \nComment \nDivergence with YAC data (T)\n" CHROMOSOME_I assembly_tag Finished 11632323 11632335 . + . Note "Left: Y47H9A " CHROMOSOME_I assembly_tag Finished 11632426 11632429 . - . Note "Right: C17D12" CHROMOSOME_I assembly_tag Clone 11632426 11632429 . - . Note "right end: C17D12" CHROMOSOME_I assembly_tag Clone 11632426 11632429 . - . Note "right end: C17D12" CHROMOSOME_I assembly_tag Clone 11637323 11637328 . + . Note "left end: W04G5" CHROMOSOME_I assembly_tag Clone 11637323 11637328 . + . Note "left end: W04G5" CHROMOSOME_I assembly_tag Finished 11637323 11637328 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11637418 11637436 . - . Note "Right: Y47H9A " CHROMOSOME_I assembly_tag Finished 11661880 11661883 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11661880 11661883 . + . Note "left end: F11A6" CHROMOSOME_I assembly_tag Clone 11661880 11661883 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 11661969 11661974 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 11665500 11665508 . + . Note "The overlapping cosmid W04G5 appears to\nhave deleted a copy of the repeating\noctomer ATGTAGGC" CHROMOSOME_I assembly_tag annotation 11665821 11665824 . + . Note "The overlapping cosmid W04G5 appears to\nhave deleted bases from this tandem\nrepeat region. " CHROMOSOME_I assembly_tag Clone 11669025 11669028 . - . Note "right end: W04G5" CHROMOSOME_I assembly_tag Clone 11696388 11696391 . + . Note "left end: T22H2" CHROMOSOME_I assembly_tag Finished 11696388 11696391 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11696603 11696606 . - . Note "right end: " CHROMOSOME_I assembly_tag Finished 11696603 11696606 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 11714620 11714623 . + . Note "Left: F35E2" CHROMOSOME_I assembly_tag Clone 11714620 11714623 . + . Note "left end: F35E2" CHROMOSOME_I assembly_tag Clone 11714620 11714623 . + . Note "left end: F35E2" CHROMOSOME_I assembly_tag Finished 11714731 11714734 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 11720893 11720902 . + . Note "Clone deleted during growth between\nposition 6274 and 8030. Digest suggests\nlarger species present with the greatest\nincrease in size being 3.3Kb." CHROMOSOME_I assembly_tag Clone 11734222 11734225 . - . Note "right end: T22H2" CHROMOSOME_I assembly_tag Finished 11751951 11751959 . + . Note "Left: Y47H9B " CHROMOSOME_I assembly_tag Clone 11752055 11752058 . - . Note "right end: F35E2" CHROMOSOME_I assembly_tag Finished 11752055 11752058 . - . Note "Right: F35E2" CHROMOSOME_I assembly_tag Clone 11752055 11752058 . - . Note "right end: F35E2" CHROMOSOME_I assembly_tag Clone 11758278 11758281 . + . Note "left end: ZK1151" CHROMOSOME_I assembly_tag Clone 11758278 11758281 . + . Note "left end: ZK1151" CHROMOSOME_I assembly_tag Finished 11758278 11758281 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11758374 11758388 . - . Note "Right: Y47H9B " CHROMOSOME_I assembly_tag Clone 11784177 11784180 . + . Note "left end: F53B8" CHROMOSOME_I assembly_tag Clone 11784177 11784180 . + . Note "left end: F53B8" CHROMOSOME_I assembly_tag Finished 11784177 11784180 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11784276 11784291 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11797847 11797850 . - . Note "right end: ZK1151" CHROMOSOME_I assembly_tag Finished 11801502 11801505 . + . Note "Left: T02G6" CHROMOSOME_I assembly_tag Clone 11801502 11801505 . + . Note "left end: T02G6" CHROMOSOME_I assembly_tag Clone 11801502 11801505 . + . Note "left end: T02G6" CHROMOSOME_I assembly_tag Finished 11801602 11801615 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11822263 11822266 . - . Note "right end: F53B8" CHROMOSOME_I assembly_tag Finished 11838818 11838822 . + . Note "Left: Y47H9C" CHROMOSOME_I assembly_tag Clone 11838918 11838921 . + . Note "right end: T02G6" CHROMOSOME_I assembly_tag Clone 11838918 11838921 . - . Note "right end: T02G6" CHROMOSOME_I assembly_tag Finished 11838918 11838921 . - . Note "Right: T02G6\n" CHROMOSOME_I assembly_tag annotation 11880779 11880789 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nBoth reads from a short insert library \npropared from a single pUC" CHROMOSOME_I assembly_tag annotation 11888813 11888815 . + . Note "First select a Feature -\n[x] Unsure\n[ ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nBases unsure.Only primer reads.May be 1 or more bases missing\n" CHROMOSOME_I assembly_tag Clone 11914045 11914050 . + . Note "left end: R09B3" CHROMOSOME_I assembly_tag Clone 11914045 11914050 . + . Note "left end: R09B3" CHROMOSOME_I assembly_tag Finished 11914045 11914050 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11914145 11914159 . - . Note "Right: Y47H9C" CHROMOSOME_I assembly_tag Finished 11921499 11921504 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11921499 11921504 . + . Note "left end: R06C1" CHROMOSOME_I assembly_tag Clone 11921499 11921504 . + . Note "left end: R06C1" CHROMOSOME_I assembly_tag Finished 11921603 11921610 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11948647 11948652 . - . Note "right end: R09B3" CHROMOSOME_I assembly_tag Finished 11960372 11960375 . + . Note "Left: Y53C10A" CHROMOSOME_I assembly_tag Finished 11960473 11960478 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11960473 11960478 . - . Note "right end: R06C1" CHROMOSOME_I assembly_tag Clone 11960473 11960478 . - . Note "right end: R06C1" CHROMOSOME_I assembly_tag annotation 11968678 11968907 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here - single clone reagion covered by a small insert library \n" CHROMOSOME_I assembly_tag annotation 11984015 11984032 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region covered by mc55c4 terminator" CHROMOSOME_I assembly_tag annotation 12023020 12023042 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here - single clone region,\ncovered by term un12b4.p1tL\n" CHROMOSOME_I assembly_tag Clone 12038416 12038419 . + . Note "left end: Y47H10" CHROMOSOME_I assembly_tag Clone 12038416 12038421 . + . Note "left end: Y47H10" CHROMOSOME_I assembly_tag Finished 12038416 12038421 . + . Note "Left: F58D5" CHROMOSOME_I assembly_tag Finished 12038416 12038421 . + . Note "Left: Y47H10A" CHROMOSOME_I assembly_tag Finished 12038521 12038524 . - . Note "Right: Y53C10A" CHROMOSOME_I assembly_tag Clone 12041019 12041022 . + . Note "left end: F58D5" CHROMOSOME_I assembly_tag Clone 12044285 12044290 . - . Note "right end: Y53C10" CHROMOSOME_I assembly_tag Finished 12079717 12079720 . + . Note "Right: F58D5" CHROMOSOME_I assembly_tag Clone 12079717 12079720 . - . Note "right end: F58D5" CHROMOSOME_I assembly_tag Clone 12203265 12203268 . + . Note "left end: C15C6" CHROMOSOME_I assembly_tag Finished 12203265 12203268 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12223608 12223611 . + . Note "left end: F14B6" CHROMOSOME_I assembly_tag Clone 12223608 12223611 . + . Note "left end: F14B6" CHROMOSOME_I assembly_tag Finished 12223608 12223611 . + . Note "Left: F14B6" CHROMOSOME_I assembly_tag Finished 12223710 12223716 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12242925 12242928 . - . Note "right end: C15C6" CHROMOSOME_I assembly_tag Clone 12252784 12252787 . + . Note "left end: F41D3" CHROMOSOME_I assembly_tag Finished 12252784 12252787 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12252784 12252787 . + . Note "left end: F41D3" CHROMOSOME_I assembly_tag Finished 12252887 12252890 . - . Note "Right: F14B6" CHROMOSOME_I assembly_tag Clone 12260736 12260739 . - . Note "right end: F14B6" CHROMOSOME_I assembly_tag Finished 12287540 12287543 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12287540 12287543 . + . Note "left end: F56H6" CHROMOSOME_I assembly_tag Clone 12291810 12291813 . - . Note "right end: F41D3\n" CHROMOSOME_I assembly_tag Clone 12291810 12291813 . - . Note "right end: F41D3" CHROMOSOME_I assembly_tag Finished 12291810 12291813 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 12324060 12324063 . + . Note "Left: C47F8" CHROMOSOME_I assembly_tag Finished 12324161 12324164 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12324161 12324164 . - . Note "right end: F56H6" CHROMOSOME_I assembly_tag Clone 12324161 12324164 . - . Note "right end: F56H6" CHROMOSOME_I assembly_tag annotation 12335119 12335164 . + . Note "[ ] Tandem repeat \n[X] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_I assembly_tag Finished 12345774 12345777 . + . Note "Left: T09E11" CHROMOSOME_I assembly_tag Clone 12345774 12345777 . + . Note "left end: T09E11" CHROMOSOME_I assembly_tag Clone 12345774 12345777 . + . Note "left end: T09E11" CHROMOSOME_I assembly_tag Finished 12345872 12345875 . - . Note "Right: C47F8" CHROMOSOME_I assembly_tag Clone 12379423 12379426 . + . Note "left end: T15D6" CHROMOSOME_I assembly_tag Finished 12379423 12379426 . + . Note "Left: T15D6" CHROMOSOME_I assembly_tag Clone 12379423 12379426 . + . Note "left end: T15D6" CHROMOSOME_I assembly_tag Finished 12379516 12379519 . - . Note "Right: T09E11" CHROMOSOME_I assembly_tag Clone 12383588 12383591 . - . Note "right end: T09E11" CHROMOSOME_I assembly_tag Clone 12409247 12409250 . + . Note "left end: E03H4" CHROMOSOME_I assembly_tag Finished 12409247 12409250 . + . Note "Left: E03H4" CHROMOSOME_I assembly_tag Clone 12409247 12409250 . + . Note "left end: E03H4" CHROMOSOME_I assembly_tag Finished 12409348 12409351 . - . Note "Right: T15D6" CHROMOSOME_I assembly_tag Clone 12415065 12415068 . - . Note "right end: T15D6" CHROMOSOME_I assembly_tag Clone 12430330 12430333 . + . Note "left end: C54C8" CHROMOSOME_I assembly_tag Finished 12449043 12449046 . + . Note "Left: C54C8" CHROMOSOME_I assembly_tag Clone 12449145 12449148 . - . Note "right end: E03H4" CHROMOSOME_I assembly_tag Clone 12449145 12449148 . - . Note "right end: E03H4" CHROMOSOME_I assembly_tag Finished 12449145 12449148 . - . Note "Right: E03H4" CHROMOSOME_I assembly_tag Finished 12472894 12472897 . + . Note "Left: Y91F4A" CHROMOSOME_I assembly_tag Clone 12472999 12473002 . - . Note "right end: C54C8" CHROMOSOME_I assembly_tag Clone 12472999 12473002 . - . Note "right end: C54C8" CHROMOSOME_I assembly_tag Finished 12472999 12473002 . - . Note "Right: C54C8" CHROMOSOME_I assembly_tag annotation 12473297 12473463 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12474134 12474215 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12475225 12475576 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12476458 12476996 . - . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 12478245 12478248 . + . Note "left end: T27F6" CHROMOSOME_I assembly_tag Finished 12478245 12478248 . + . Note "Left: T27F6" CHROMOSOME_I assembly_tag Clone 12478245 12478248 . + . Note "left end: T27F6" CHROMOSOME_I assembly_tag Finished 12478344 12478347 . - . Note "Right: Y91F4A" CHROMOSOME_I assembly_tag annotation 12487138 12488057 . + . Note "DIGEST DATA DIFFERS BY APPROX 32 BASES.\nPOSSIBLY 2 COPIES OF 12 OR 13 BASE PAIR\nTANDEM REPEAT MISSING\n" CHROMOSOME_I assembly_tag Clone 12508704 12508707 . + . Note "left end: K11D2" CHROMOSOME_I assembly_tag Clone 12508704 12508707 . + . Note "left end: K11D2" CHROMOSOME_I assembly_tag Finished 12508704 12508707 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 12508804 12508807 . - . Note "Right: T27F6" CHROMOSOME_I assembly_tag annotation 12509588 12509590 . + . Note "cosmid mutation. T27F6 reads TTCCATT\nK11D2 reads TTCGCATT" CHROMOSOME_I assembly_tag Clone 12514550 12514553 . - . Note "right end: T27F6" CHROMOSOME_I assembly_tag Finished 12535401 12535406 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12535401 12535406 . + . Note "left end: W02D9" CHROMOSOME_I assembly_tag Clone 12535401 12535406 . + . Note "left end: W02D9" CHROMOSOME_I assembly_tag Finished 12535500 12535509 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 12570316 12570322 . + . Note "Left: C49G9" CHROMOSOME_I assembly_tag Clone 12570421 12570424 . - . Note "right end: W02D9" CHROMOSOME_I assembly_tag Finished 12570421 12570424 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12570421 12570424 . - . Note "right end: W02D9" CHROMOSOME_I assembly_tag Finished 12576597 12576600 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12576597 12576600 . + . Note "left end: F33E2" CHROMOSOME_I assembly_tag Clone 12576597 12576600 . + . Note "left end: F33E2" CHROMOSOME_I assembly_tag Finished 12576699 12576708 . - . Note "Right: C49G9" CHROMOSOME_I assembly_tag annotation 12592141 12592141 . + . Note "uc77g12 calls 12 T's, the other two\ncall 13 T's. Edited to the larger\nnumber." CHROMOSOME_I assembly_tag Clone 12602643 12602646 . + . Note "left end: T07D10" CHROMOSOME_I assembly_tag Finished 12602643 12602646 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12602643 12602646 . + . Note "left end: T07D10\n" CHROMOSOME_I assembly_tag Finished 12602747 12602750 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12617278 12617281 . - . Note "right end: F33E2" CHROMOSOME_I assembly_tag Finished 12642922 12642925 . + . Note "Left: H16D19" CHROMOSOME_I assembly_tag Finished 12643015 12643018 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12643015 12643018 . - . Note "right end: T07D10" CHROMOSOME_I assembly_tag Clone 12643015 12643018 . - . Note "right end: T07D10\n" CHROMOSOME_I assembly_tag annotation 12653152 12653180 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsingle clone = uy81d1" CHROMOSOME_I assembly_tag Finished 12655555 12655558 . + . Note "Left: H28O16" CHROMOSOME_I assembly_tag Clone 12655555 12655558 . + . Note "left end: H28O16" CHROMOSOME_I assembly_tag Clone 12655555 12655558 . + . Note "left end: H28O16" CHROMOSOME_I assembly_tag Finished 12655652 12655655 . - . Note "Right: H16D19" CHROMOSOME_I assembly_tag Clone 12658819 12658822 . - . Note "right end: H16D19" CHROMOSOME_I assembly_tag Clone 12663276 12663279 . + . Note "left end: T26E3" CHROMOSOME_I assembly_tag Finished 12663276 12663279 . + . Note "Left: T26E3" CHROMOSOME_I assembly_tag Clone 12663276 12663279 . + . Note "left end: T26E3" CHROMOSOME_I assembly_tag Finished 12663372 12663375 . - . Note "Right: H28O16\n" CHROMOSOME_I assembly_tag annotation 12664626 12664626 . + . Note "this base could be an A - only cosmid PCRs cover this area." CHROMOSOME_I assembly_tag annotation 12684466 12684488 . + . Note "there may be additional bases at this\nposition. Digest confirms assembly\nand pre-analysis finds no frame-shift." CHROMOSOME_I assembly_tag annotation 12684469 12684469 . + . Note "this base may be a T" CHROMOSOME_I assembly_tag Finished 12695410 12695413 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12695410 12695413 . + . Note "left end: F28C12" CHROMOSOME_I assembly_tag Clone 12695410 12695413 . + . Note "left end: F28C12" CHROMOSOME_I assembly_tag Finished 12695511 12695517 . - . Note "Right: T26E3" CHROMOSOME_I assembly_tag Clone 12705079 12705082 . - . Note "right end: T26E3" CHROMOSOME_I assembly_tag Clone 12709956 12709959 . + . Note "left end: T06G6" CHROMOSOME_I assembly_tag Finished 12709956 12709959 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12709956 12709959 . + . Note "left end: T06G6" CHROMOSOME_I assembly_tag Finished 12710056 12710062 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 12738575 12738580 . + . Note "Left: W02A11" CHROMOSOME_I assembly_tag Clone 12738575 12738580 . + . Note "left end: W02A11" CHROMOSOME_I assembly_tag Clone 12738575 12738580 . + . Note "left end: W02A11" CHROMOSOME_I assembly_tag Finished 12738682 12738691 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12746672 12746675 . - . Note "right end: T06G6" CHROMOSOME_I assembly_tag Clone 12748654 12748657 . + . Note "left end: B0019\n" CHROMOSOME_I assembly_tag Finished 12748654 12748657 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12770774 12770777 . - . Note "right end: W02A11\n" CHROMOSOME_I assembly_tag Clone 12770774 12770777 . - . Note "right end: W02A11" CHROMOSOME_I assembly_tag Finished 12770774 12770777 . - . Note "Right: W02A11" CHROMOSOME_I assembly_tag annotation 12778016 12778038 . + . Note "23 Cs - this is an estimated base count. \nthere may be 19-25 Cs here." CHROMOSOME_I assembly_tag Finished 12788339 12788344 . + . Note "Left: Y18D10A " CHROMOSOME_I assembly_tag Clone 12788440 12788443 . - . Note "right end: B0019" CHROMOSOME_I assembly_tag Clone 12788440 12788443 . - . Note "right end: B0019" CHROMOSOME_I assembly_tag Finished 12788440 12788443 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 12790391 12791250 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat with base variations of the sequence:AAATATTAATTAAATAAATAAAThere may be fewer or more copies of the repeat than are reperesented here.There may be some base discrepancies." CHROMOSOME_I assembly_tag annotation 12790803 12790817 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[x] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12827799 12827826 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nDye-primer reads only across this region\n" CHROMOSOME_I assembly_tag annotation 12862607 12863002 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -All reads across this region probed from a short insert library prepared from a pcr of a single clone." CHROMOSOME_I assembly_tag annotation 12891029 12891042 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Only one dye-primer read over this region.All other chemistries fail." CHROMOSOME_I assembly_tag annotation 12907190 12907666 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat with base variations of the sequence:TGCAAAAAGGGGATCThere may be fewer or more copies of the repeat than are represented here.There may be some base discrepancies." CHROMOSOME_I assembly_tag annotation 12907384 12907397 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[x] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12920153 12920200 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -All reads across this region come from a short insert library prepped from a single clone" CHROMOSOME_I assembly_tag annotation 12935497 12935513 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Reads over this region are all from a short insert library prepped from asingle clone " CHROMOSOME_I assembly_tag Clone 12941104 12941107 . + . Note "left end: F08A8" CHROMOSOME_I assembly_tag Clone 12941104 12941107 . + . Note "left end: F08A8" CHROMOSOME_I assembly_tag Finished 12941104 12941107 . + . Note "Left: F08A8" CHROMOSOME_I assembly_tag Finished 12941204 12941216 . - . Note "Right: Y18D10A" CHROMOSOME_I assembly_tag Clone 12958736 12958741 . - . Note "right end: Y18D10" CHROMOSOME_I assembly_tag annotation 12961064 12961084 . + . Note "single clone region\nBAMH1 digest confirms overall assembly" CHROMOSOME_I assembly_tag annotation 12961360 12961628 . + . Note "single clone region\noverall assembly confirmed by BamH1 \ndigest" CHROMOSOME_I assembly_tag Clone 12967761 12967764 . + . Note "left end: C47B2" CHROMOSOME_I assembly_tag Finished 12967761 12967764 . + . Note "Left: C47B2" CHROMOSOME_I assembly_tag Clone 12967761 12967764 . + . Note "left end: C47B2" CHROMOSOME_I assembly_tag Finished 12967860 12967863 . - . Note "Right: F08A8" CHROMOSOME_I assembly_tag Clone 12978413 12978416 . - . Note "right end: F08A8" CHROMOSOME_I assembly_tag Clone 12996528 12996531 . + . Note "left end: CC4" CHROMOSOME_I assembly_tag Clone 12996528 12996531 . + . Note "left end: CC4" CHROMOSOME_I assembly_tag Finished 12996528 12996531 . + . Note "Left: CC4" CHROMOSOME_I assembly_tag Finished 12996626 12996631 . - . Note "Right: C47B2" CHROMOSOME_I assembly_tag annotation 13022920 13022945 . + . Note "single M13 clone.\nbase accuracy cannot be guarenteed." CHROMOSOME_I assembly_tag annotation 13023008 13023008 . + . Note "this base could be a G" CHROMOSOME_I assembly_tag annotation 13023021 13023021 . + . Note "this base could be a G" CHROMOSOME_I assembly_tag annotation 13023023 13023023 . + . Note "this base is unclear" CHROMOSOME_I assembly_tag annotation 13023062 13023064 . + . Note "unclear. there may be only 2 Cs here" CHROMOSOME_I assembly_tag annotation 13023813 13023813 . + . Note "this base may not exist" CHROMOSOME_I assembly_tag annotation 13023826 13023826 . + . Note "this base is very unclear" CHROMOSOME_I assembly_tag annotation 13023922 13023922 . + . Note "this base could be a T" CHROMOSOME_I assembly_tag annotation 13023927 13023927 . + . Note "this base could be a T" CHROMOSOME_I assembly_tag annotation 13024265 13027198 . + . Note "40 copies of 1 36bp element and a 79bp\nelement. Digest with AVAII and SALI\nshows this region is about the right \nsize. base accuracy cannot be\nguarenteed over this area." CHROMOSOME_I assembly_tag Finished 13028488 13028491 . + . Note "Left: ZK256" CHROMOSOME_I assembly_tag Clone 13028587 13028590 . - . Note "right end: CC4" CHROMOSOME_I assembly_tag Finished 13028587 13028590 . - . Note "Right: CC4" CHROMOSOME_I assembly_tag Clone 13028587 13028590 . - . Note "right end: CC4" CHROMOSOME_I assembly_tag Clone 13037657 13037660 . + . Note "left end: W05B5" CHROMOSOME_I assembly_tag Clone 13037657 13037660 . + . Note "left end: W05B5" CHROMOSOME_I assembly_tag Finished 13037657 13037660 . + . Note "Left: W05B5" CHROMOSOME_I assembly_tag Finished 13037757 13037761 . - . Note "Right: ZK256 " CHROMOSOME_I assembly_tag Clone 13052652 13052655 . - . Note "right end: ZK256" CHROMOSOME_I assembly_tag Finished 13067032 13067035 . + . Note "Left: Y26D4A" CHROMOSOME_I assembly_tag annotation 13067087 13067134 . - . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 13067135 13067138 . - . Note "right end: W05B5" CHROMOSOME_I assembly_tag Finished 13067135 13067138 . - . Note "Right: W05B5" CHROMOSOME_I assembly_tag annotation 13080369 13080710 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsmall insert library of uz59d11" CHROMOSOME_I assembly_tag annotation 13088984 13089062 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 13093532 13093633 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 13107785 13107846 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 13110308 13110311 . + . Note "left end: C17H1" CHROMOSOME_I assembly_tag Finished 13110308 13110311 . + . Note "Left: C17H1" CHROMOSOME_I assembly_tag Clone 13110308 13110311 . + . Note "left end: C17H1" CHROMOSOME_I assembly_tag Finished 13110408 13110411 . - . Note "Right: Y26D4A" CHROMOSOME_I assembly_tag annotation 13126211 13126385 . + . Note "Single clone area.\nPossible descrepancies, \nrestriction digest good." CHROMOSOME_I assembly_tag Clone 13147463 13147466 . + . Note "left end: F22G12" CHROMOSOME_I assembly_tag Clone 13147463 13147466 . + . Note "left end: F22G12" CHROMOSOME_I assembly_tag Finished 13147463 13147466 . + . Note "Left: F22G12" CHROMOSOME_I assembly_tag Finished 13147565 13147568 . - . Note "Right: C17H1" CHROMOSOME_I assembly_tag annotation 13154731 13154741 . + . Note "Run of T's. Some clones say 10 and\nsome say 11 so edited to the longest\nrun with several representatives. " CHROMOSOME_I assembly_tag Clone 13156382 13156385 . - . Note "right end: C17H1" CHROMOSOME_I assembly_tag Clone 13176938 13176941 . + . Note "left end: F17B5" CHROMOSOME_I assembly_tag Clone 13176938 13176941 . + . Note "left end: F17B5" CHROMOSOME_I assembly_tag Finished 13176938 13176941 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 13177042 13177045 . - . Note "Right: F22G12" CHROMOSOME_I assembly_tag Finished 13213330 13213335 . + . Note "Left: ZK1225" CHROMOSOME_I assembly_tag Clone 13213436 13213439 . - . Note "right end: F17B5" CHROMOSOME_I assembly_tag Clone 13213436 13213439 . - . Note "right end: F17B5" CHROMOSOME_I assembly_tag Finished 13213436 13213439 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 13235747 13235750 . + . Note "Left: ZK1053" CHROMOSOME_I assembly_tag Clone 13235747 13235750 . + . Note "left end: ZK1053" CHROMOSOME_I assembly_tag Clone 13235747 13235750 . + . Note "left end: ZK1053" CHROMOSOME_I assembly_tag Finished 13235851 13235857 . - . Note "Right: ZK1225" CHROMOSOME_I assembly_tag annotation 13238580 13239747 . + . Note "15 copies of 39mer tandem repeat.\ndigest with Hind111, EcoR1 shows \nthere are 19-20 copies missing in\nthe assembly. (750-800bp)" CHROMOSOME_I assembly_tag annotation 13240131 13240142 . + . Note "2 m13 clones show 11 Cs here" CHROMOSOME_I assembly_tag Clone 13257742 13257745 . + . Note "left end: F44F1" CHROMOSOME_I assembly_tag Clone 13257742 13257745 . + . Note "left end: F44F1" CHROMOSOME_I assembly_tag Finished 13257742 13257745 . + . Note "Left: F44F1" CHROMOSOME_I assembly_tag Finished 13257844 13257852 . - . Note "Right: ZK1053" CHROMOSOME_I assembly_tag Clone 13267027 13267030 . - . Note "right end: ZK1053" CHROMOSOME_I assembly_tag Clone 13280075 13280078 . + . Note "left end: M01E5" CHROMOSOME_I assembly_tag Clone 13280075 13280078 . + . Note "left end: M01E5" CHROMOSOME_I assembly_tag Finished 13280075 13280078 . + . Note "Left: M01E5" CHROMOSOME_I assembly_tag Finished 13280174 13280177 . - . Note "Right: F44F1" CHROMOSOME_I assembly_tag Clone 13293357 13293360 . - . Note "right end: F44F1" CHROMOSOME_I assembly_tag Clone 13307817 13307820 . + . Note "left end: T04D3" CHROMOSOME_I assembly_tag Clone 13307817 13307820 . + . Note "left end: T04D3" CHROMOSOME_I assembly_tag Finished 13307817 13307820 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 13307919 13307922 . - . Note "Right: M01E5" CHROMOSOME_I assembly_tag Clone 13321519 13321522 . - . Note "right end: M01E5" CHROMOSOME_I assembly_tag Finished 13342931 13342934 . + . Note "Left: W08E3" CHROMOSOME_I assembly_tag Clone 13343033 13343036 . - . Note "right end: T04D3" CHROMOSOME_I assembly_tag Finished 13343033 13343036 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 13343033 13343036 . - . Note "right end: T04D3" CHROMOSOME_I assembly_tag Finished 13351898 13351904 . + . Note "Left: Y40B1A " CHROMOSOME_I assembly_tag Clone 13351997 13352000 . + . Note "right end: W08E3" CHROMOSOME_I assembly_tag Clone 13351997 13352000 . - . Note "right end: W08E3" CHROMOSOME_I assembly_tag Finished 13351997 13352000 . - . Note "Right: W08E3" CHROMOSOME_I assembly_tag annotation 13370980 13371095 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n\n" CHROMOSOME_I assembly_tag annotation 13371183 13371198 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nDye-primer read from a single clone only\nAll other chemistries fail." CHROMOSOME_I assembly_tag annotation 13371528 13371630 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 13379844 13379847 . + . Note "left end: C01A2" CHROMOSOME_I assembly_tag Clone 13379844 13379847 . + . Note "left end: C01A2" CHROMOSOME_I assembly_tag Finished 13379844 13379847 . + . Note "Left: C01A2" CHROMOSOME_I assembly_tag Finished 13379939 13379951 . - . Note "Right: Y40B1A \n" CHROMOSOME_I assembly_tag Clone 13397932 13397936 . + . Note "left end: W05H12" CHROMOSOME_I assembly_tag annotation 13412177 13416532 . - . Note "27 base tandem repeat with slight base variation. 159 copies. \nRestriction digest with EcoR1 and AVAII\nsuggests there may be 2 copies missing.Assembly over this area will be \ninaccurate. " CHROMOSOME_I assembly_tag Finished 13419941 13419948 . + . Note "Left: W05H12" CHROMOSOME_I assembly_tag cosmid 13420042 13420045 . + . Note "vector: CAF:End=Left::PJB8" CHROMOSOME_I assembly_tag Clone 13420042 13420045 . - . Note "right end: C01A2" CHROMOSOME_I assembly_tag cosmid 13420042 13420045 . - . Note "vector: CAF:End=Left::PJB8" CHROMOSOME_I assembly_tag Clone 13420042 13420045 . - . Note "left end: C01A2" CHROMOSOME_I assembly_tag Finished 13420042 13420045 . - . Note "Right: C01A2" CHROMOSOME_I assembly_tag repeat 13421104 13421238 . + . CHROMOSOME_I assembly_tag repeat 13421109 13421142 . - . Note "Repeats with contig ud74d12.s1, offset 10496\n" CHROMOSOME_I assembly_tag repeat 13421167 13421207 . + . Note "Repeats with contig ud80h10.s1t, offset 3725\n" CHROMOSOME_I assembly_tag repeat 13421167 13421207 . - . Note "Repeats with contig ud74d12.s1, offset 12987\n" CHROMOSOME_I assembly_tag repeat 13421507 13421635 . + . CHROMOSOME_I assembly_tag repeat 13421512 13421574 . + . Note "Repeats with contig ud72h6.s1, offset 117\n" CHROMOSOME_I assembly_tag repeat 13421576 13421602 . + . Note "Repeats with contig ud72h6.s1, offset 89\n" CHROMOSOME_I assembly_tag repeat 13421967 13421983 . + . CHROMOSOME_I assembly_tag repeat 13422020 13422150 . + . CHROMOSOME_I assembly_tag compression 13422047 13422056 . + . CHROMOSOME_I assembly_tag repeat 13422055 13422081 . + . Note "Repeats with contig ud72c5.s1, offset 160\n" CHROMOSOME_I assembly_tag repeat 13422083 13422145 . + . CHROMOSOME_I assembly_tag oligo 13422180 13422196 . - . Note "serial#=W05H12.2\nsequence=TGCATACGGGCACTTTG\nflags=\n" CHROMOSOME_I assembly_tag repeat 13422310 13422359 . + . CHROMOSOME_I assembly_tag repeat 13422310 13422359 . - . Note "Repeats with contig ud74d12.s1, offset 37\n" CHROMOSOME_I assembly_tag oligo 13422402 13422418 . + . Note "serial#=W05H12.1\ntemplate=ug22g9.s1 \nsequence=CAGAAGAACTTGACCCG\nflags=\n" CHROMOSOME_I assembly_tag compression 13422419 13422426 . + . CHROMOSOME_I assembly_tag repeat 13422423 13422471 . + . CHROMOSOME_I assembly_tag repeat 13422423 13422616 . + . CHROMOSOME_I assembly_tag compression 13422512 13422521 . + . CHROMOSOME_I assembly_tag comment 13422521 13422526 . + . CHROMOSOME_I assembly_tag repeat 13422522 13422547 . + . CHROMOSOME_I assembly_tag compression 13422558 13422564 . + . CHROMOSOME_I assembly_tag repeat 13422584 13422609 . + . Note "Repeats with contig ud74d12.s1, offset 2136\n" CHROMOSOME_I assembly_tag repeat 13422584 13422616 . + . Note "Repeats with contig ud74d12.s1, offset 4911\n" CHROMOSOME_I assembly_tag repeat 13422585 13422610 . - . Note "Repeats with contig ud74d12.s1, offset 2135\n" CHROMOSOME_I assembly_tag repeat 13422616 13422674 . + . CHROMOSOME_I assembly_tag repeat 13422675 13422689 . + . CHROMOSOME_I assembly_tag repeat 13422921 13422950 . - . Note "Repeats with contig ud74d12.s1, offset 3648\n" CHROMOSOME_I assembly_tag repeat 13422979 13423007 . + . Note "Repeats with contig ud72h6.s1, offset 1013\n" CHROMOSOME_I assembly_tag repeat 13423009 13423084 . + . Note "Repeats with contig ud72h6.s1, offset 1043\n" CHROMOSOME_I assembly_tag repeat 13423116 13423146 . + . CHROMOSOME_I assembly_tag repeat 13423148 13423184 . + . CHROMOSOME_I assembly_tag repeat 13423208 13423254 . + . CHROMOSOME_I assembly_tag repeat 13423991 13424037 . + . CHROMOSOME_I assembly_tag repeat 13424062 13424098 . + . CHROMOSOME_I assembly_tag repeat 13424100 13424130 . + . CHROMOSOME_I assembly_tag repeat 13424161 13424236 . + . CHROMOSOME_I assembly_tag repeat 13424238 13424266 . + . CHROMOSOME_I assembly_tag repeat 13424295 13424324 . + . CHROMOSOME_I assembly_tag repeat 13424325 13424512 . + . CHROMOSOME_I assembly_tag repeat 13424513 13424569 . + . CHROMOSOME_I assembly_tag repeat 13424570 13424585 . + . CHROMOSOME_I assembly_tag repeat 13424585 13424724 . + . CHROMOSOME_I assembly_tag repeat 13424586 13424822 . + . CHROMOSOME_I assembly_tag repeat 13424619 13424660 . + . CHROMOSOME_I assembly_tag repeat 13424635 13424660 . + . CHROMOSOME_I assembly_tag repeat 13424698 13424723 . + . CHROMOSOME_I assembly_tag comment 13424719 13424724 . - . Note "try breaking here....\n\nambiguous join..." CHROMOSOME_I assembly_tag comment 13424720 13424725 . - . CHROMOSOME_I assembly_tag repeat 13424774 13424822 . + . CHROMOSOME_I assembly_tag repeat 13424860 13424873 . + . CHROMOSOME_I assembly_tag repeat 13424879 13424892 . + . CHROMOSOME_I assembly_tag compression 13424923 13424956 . - . CHROMOSOME_I assembly_tag repeat 13424945 13424973 . - . Note "Repeats with contig ud74d12.s1, offset 4462\n" CHROMOSOME_I assembly_tag repeat 13424935 13424974 . - . Note "Repeats with contig ud74d12.s1, offset 4275\n" CHROMOSOME_I assembly_tag repeat 13425065 13425093 . - . Note "Repeats with contig ud74d12.s1, offset 4276\n" CHROMOSOME_I assembly_tag repeat 13425065 13425093 . - . Note "Repeats with contig ud74d12.s1, offset 4582\n" CHROMOSOME_I assembly_tag repeat 13425181 13425238 . + . CHROMOSOME_I assembly_tag compression 13425215 13425273 . + . CHROMOSOME_I assembly_tag repeat 13425251 13425279 . - . Note "Repeats with contig ud74d12.s1, offset 4462\n" CHROMOSOME_I assembly_tag repeat 13425241 13425280 . - . Note "Repeats with contig ud74d12.s1, offset 4581\n" CHROMOSOME_I assembly_tag compression 13425812 13425874 . + . CHROMOSOME_I assembly_tag repeat 13425878 13425907 . + . CHROMOSOME_I assembly_tag repeat 13425878 13425907 . - . Note "Repeats with contig ud74d12.s1, offset 6605\n" CHROMOSOME_I assembly_tag repeat 13427391 13427416 . + . CHROMOSOME_I assembly_tag repeat 13427395 13427420 . + . CHROMOSOME_I assembly_tag repeat 13427391 13427416 . - . Note "Repeats with contig ud74d12.s1, offset 2104\n" CHROMOSOME_I assembly_tag repeat 13427395 13427420 . - . Note "Repeats with contig ud74d12.s1, offset 6945\n" CHROMOSOME_I assembly_tag repeat 13427426 13427451 . + . CHROMOSOME_I assembly_tag repeat 13427426 13427451 . - . Note "Repeats with contig ud74d12.s1, offset 2139\n" CHROMOSOME_I assembly_tag compression 13428995 13429006 . - . CHROMOSOME_I assembly_tag compression 13429272 13429283 . - . CHROMOSOME_I assembly_tag Finished 13429453 13429462 . + . Note "Left: Y40B1B " CHROMOSOME_I assembly_tag repeat 13429469 13429518 . + . CHROMOSOME_I assembly_tag repeat 13429469 13429518 . - . Note "Repeats with contig ud74d12.s1, offset 7196\n" CHROMOSOME_I assembly_tag cosmid 13429551 13429554 . + . Note "vector: CAF:End=Left::lorist4" CHROMOSOME_I assembly_tag cosmid 13429549 13429554 . - . Note "vector: " CHROMOSOME_I assembly_tag cosmid 13429551 13429554 . - . Note "vector: CAF:End=Left::lorist4" CHROMOSOME_I assembly_tag Clone 13429551 13429554 . - . Note "right end: W05H12" CHROMOSOME_I assembly_tag Finished 13429551 13429554 . - . Note "Right: W05H12" CHROMOSOME_I assembly_tag Clone 13429551 13429554 . - . Note "right end: W05H12" CHROMOSOME_I assembly_tag annotation 13452751 13452753 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nThese three bases are determined only by primer chemistry\n" CHROMOSOME_I assembly_tag Finished 13458656 13458673 . + . Note "Left: Y48G10A " CHROMOSOME_I assembly_tag Clone 13458760 13458765 . - . Note "right end: Y40B1" CHROMOSOME_I assembly_tag Finished 13458760 13458765 . - . Note "Right: Y40B1B" CHROMOSOME_I assembly_tag Clone 13458760 13458765 . - . Note "right end: Y40B1" CHROMOSOME_I assembly_tag annotation 13488828 13488865 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_I assembly_tag annotation 13488962 13489045 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_I assembly_tag annotation 13492910 13492933 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Unidirectional primer reads only over this region: possible compression(s)" CHROMOSOME_I assembly_tag annotation 13493890 13493959 . - . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Sort insert library from clone me36c11" CHROMOSOME_I assembly_tag Clone 13498829 13498835 . + . Note "left end: Y87G2" CHROMOSOME_I assembly_tag Finished 13498830 13498833 . + . Note "Left: Y87G2A" CHROMOSOME_I assembly_tag Clone 13498830 13498833 . + . Note "left end: Y87G2" CHROMOSOME_I assembly_tag Finished 13498929 13498944 . - . Note "Right: Y48G10A" CHROMOSOME_I assembly_tag annotation 13547001 13547093 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nin stem of inverted repeat" CHROMOSOME_I assembly_tag annotation 13560592 13560695 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nIR2 inverted repeat" CHROMOSOME_I assembly_tag Clone 13621816 13621821 . + . Note "left end: Y6B3" CHROMOSOME_I assem