##gff-version 2
##date 2003-02-20
##sequence-region CHROMOSOME_III 1 13783268 
CHROMOSOME_III	assembly_tag	Finished	1265315	1265318	.	-	.	Note "Left: ZC47"
CHROMOSOME_III	assembly_tag	Clone	1265418	1265423	.	+	.	Note "right end: Y119D3"
CHROMOSOME_III	assembly_tag	annotation	1283799	1283802	.	-	.	Note "not sure if this is TTGG or TTTG"
CHROMOSOME_III	assembly_tag	Finished	1291656	1291661	.	-	.	Note "Right: ZC47"
CHROMOSOME_III	assembly_tag	Clone	1291656	1291661	.	-	.	Note "right end: ZC47"
CHROMOSOME_III	assembly_tag	final	3339157	3339160	.	+	.	Note "annotation: beginning of F45H7"
CHROMOSOME_III	assembly_tag	final	3361251	3361255	.	+	.	Note "annotation: probable beginning of C56G7"
CHROMOSOME_III	assembly_tag	annotation	3378432	3378435	.	+	.	Note "C56G7 JUST ITS FINISHING"
CHROMOSOME_III	assembly_tag	final	3378432	3378435	.	+	.	Note "annotation: end of F45H7"
CHROMOSOME_III	assembly_tag	annotation	3378432	3378435	.	+	.	Note "THIS IS NOT THE BEGINNING OF "
CHROMOSOME_III	assembly_tag	annotation	3378432	3378435	.	+	.	Note "end of F45H7 start of C56G7"
CHROMOSOME_III	assembly_tag	annotation	3378432	3378435	.	+	.	Note "start of C56G7"
CHROMOSOME_III	assembly_tag	annotation	3378432	3378435	.	+	.	Note "TRUE START ON F45H7"
CHROMOSOME_III	assembly_tag	annotation	3378904	3378919	.	+	.	Note "number of T's not 100% certain but spacing suggests 6."
CHROMOSOME_III	assembly_tag	annotation	3385024	3385034	.	+	.	Note "Problem repeat area between 620 and  8850  21 copies of a 95bp repeat element. where data is weak, the sequence has  been edited with the help of the repeatconsensus.  The assembly is correct according to differences between individual copies  of the repeat.  The total size of repeat agrees with  pcr from cosmid and genomic DNA  So, to the best of our knowledge this  is correct, but beware!"
CHROMOSOME_III	assembly_tag	annotation	3385067	3385068	.	+	.	Note "point mutation of T to C at this point on single strand only."
CHROMOSOME_III	assembly_tag	annotation	3385108	3385121	.	+	.	Note "Compression resolved only on negative strand other versions read GAGGGCC"
CHROMOSOME_III	assembly_tag	annotation	3385203	3385214	.	+	.	Note "Compression resolved on one strand only"
CHROMOSOME_III	assembly_tag	annotation	3385221	3385223	.	+	.	Note "Majority of reads are CAC with a single read ambigous"
CHROMOSOME_III	assembly_tag	annotation	3385250	3385250	.	+	.	Note "could well be T, go with the consensus"
CHROMOSOME_III	assembly_tag	annotation	3385262	3385262	.	+	.	Note "edit to consensus"
CHROMOSOME_III	assembly_tag	annotation	3385291	3385317	.	+	.	Note "compression resolved on one strand only"
CHROMOSOME_III	assembly_tag	annotation	3385389	3385414	.	+	.	Note "compression resolved on one strand only"
CHROMOSOME_III	assembly_tag	annotation	3385486	3385501	.	+	.	Note "Hairpin GGGCC-loop-GGCCC loop is probably GCA but resolution may not be complete despit the terminator"
CHROMOSOME_III	assembly_tag	annotation	3385581	3385599	.	+	.	Note "Difficult hairpin repeat  Sequence uncertain"
CHROMOSOME_III	assembly_tag	annotation	3385643	3385644	.	+	.	Note "Ambigous base but repeat consenus suggests an A"
CHROMOSOME_III	assembly_tag	annotation	3385667	3385669	.	+	.	Note "variable region in the repeat may be either T or C"
CHROMOSOME_III	assembly_tag	annotation	3385680	3385688	.	+	.	Note "only postive strand but consensus agrees with previous copies"
CHROMOSOME_III	assembly_tag	annotation	3385689	3385696	.	+	.	Note "consensus as per normal copy but  unresolved in this region "
CHROMOSOME_III	assembly_tag	annotation	3385764	3385768	.	+	.	Note "so0f8 repeat reads give AAG but original read and s13d11 give AGG."
CHROMOSOME_III	assembly_tag	annotation	3385779	3385793	.	+	.	Note "Compression edited according to repeat concensus TAC (instead of  CAC) is a variation in this copy of the repeat."
CHROMOSOME_III	assembly_tag	annotation	3385842	3385845	.	+	.	Note "original read clearly shows CGC which  is in agreement with the repeat consensus terminator read shows CGG. "
CHROMOSOME_III	assembly_tag	annotation	3386513	3386519	.	+	.	Note "edited GCCTAC according to consensus"
CHROMOSOME_III	assembly_tag	annotation	3386751	3386758	.	+	.	Note "probably CTAA"
CHROMOSOME_III	assembly_tag	annotation	3386917	3386960	.	+	.	Note "single stranded region with terminator across it"
CHROMOSOME_III	assembly_tag	annotation	3386925	3386934	.	+	.	Note "end of problem repeat region"
CHROMOSOME_III	assembly_tag	annotation	3387041	3387041	.	+	.	Note "very difficult compression probably a C"
CHROMOSOME_III	assembly_tag	annotation	3390417	3390417	.	+	.	Note "uncertain base, probably an A"
CHROMOSOME_III	assembly_tag	annotation	3390472	3390548	.	+	.	Note "singlr stranded region"
CHROMOSOME_III	assembly_tag	annotation	3390612	3390689	.	+	.
CHROMOSOME_III	assembly_tag	annotation	3390689	3390765	.	+	.	Note "single stranded region with terminators across"
CHROMOSOME_III	assembly_tag	annotation	3390765	3390774	.	+	.
CHROMOSOME_III	assembly_tag	annotation	3390958	3390958	.	+	.	Note "pcr mutation T > c"
CHROMOSOME_III	assembly_tag	annotation	3391307	3391324	.	+	.	Note "Single stranded region with terminator across"
CHROMOSOME_III	assembly_tag	annotation	3391324	3391463	.	+	.	Note "Single stranded with terminator acroos region"
CHROMOSOME_III	assembly_tag	annotation	3391601	3391607	.	+	.	Note "number of A's varies between 6 and 7"
CHROMOSOME_III	assembly_tag	annotation	3391640	3391641	.	-	.	Note "Two traces show PCR point mutation of T to C tewlve reads show clear T"
CHROMOSOME_III	assembly_tag	annotation	3391641	3391641	.	+	.	Note "2/12 T to C"
CHROMOSOME_III	assembly_tag	annotation	3392097	3392200	.	+	.	Note "Single stranded with terminator across the region"
CHROMOSOME_III	assembly_tag	comment	3393360	3393360	.	+	.	Note "Begining of F59A2"
CHROMOSOME_III	assembly_tag	repeat	3408565	3408578	.	+	.	Note "Possible repeat for 300 bases -  matches 215 889 "
CHROMOSOME_III	assembly_tag	annotation	3411109	3411111	.	+	.	Note "All positive and negative standard     reads show three G's, as do positive   terminators. Negative terminator on one read shows GAG."
CHROMOSOME_III	assembly_tag	repeat	3412216	3412348	.	+	.	Note "repeat unit 1"
CHROMOSOME_III	assembly_tag	repeat	3412249	3412250	.	-	.
CHROMOSOME_III	assembly_tag	repeat	3413340	3413398	.	+	.
CHROMOSOME_III	assembly_tag	repeat	3413398	3413472	.	+	.	Note "repeat unit 1"
CHROMOSOME_III	assembly_tag	annotation	3418631	3418634	.	+	.	Note "Beginning of K01A11"
CHROMOSOME_III	assembly_tag	annotation	3420455	3420622	.	+	.	Note "single-stranded with terms to check"
CHROMOSOME_III	assembly_tag	annotation	3428455	3428554	.	+	.	Note "Single-stranded with terms"
CHROMOSOME_III	assembly_tag	annotation	3428555	3428692	.	+	.	Note "Single-stranded with terms"
CHROMOSOME_III	assembly_tag	annotation	3428693	3428866	.	+	.	Note "Single-stranded with terms"
CHROMOSOME_III	assembly_tag	annotation	3429815	3429818	.	+	.	Note "right end of F59A2"
CHROMOSOME_III	assembly_tag	annotation	3430900	3430900	.	+	.	Note "Extra g in this sequence s28d1.s1l"
CHROMOSOME_III	assembly_tag	annotation	3433663	3433667	.	+	.	Note "deleted clone"
CHROMOSOME_III	assembly_tag	annotation	3433690	3433694	.	+	.	Note "unclear part of hairpin inverted repeat, probably 5 g's, matches 5Cs at other end of inverted repeat "
CHROMOSOME_III	assembly_tag	annotation	3433791	3433792	.	-	.	Note "part of inverted repeat probably a C but data is weak."
CHROMOSOME_III	assembly_tag	annotation	3433806	3433810	.	+	.	Note "unclear region of hairpin inverted repeat, edited to 5 c's pairs with 5gs at other  end of hairpin "
CHROMOSOME_III	assembly_tag	annotation	3442785	3442786	.	+	.	Note "pt mutation on single read"
CHROMOSOME_III	assembly_tag	annotation	3443616	3443616	.	+	.	Note "Majority of reads (including terminators) read G single read gives an A here"
CHROMOSOME_III	assembly_tag	annotation	3445031	3445031	.	+	.	Note "marker point 1 "
CHROMOSOME_III	assembly_tag	annotation	3445379	3445385	.	+	.	Note "false join between 2 contigs containing repetitive sequence  Distance between marker point 1 (26400) and marker point 2 (28360) should be 2.2kb according to restriction  digest and pcr data.  This suggests a gap of about 200bp at this point.  before this point we have 2 full copies of a 120bp repeat element, with a third copy beginning  This element has some homology to RcA1  The 2nd contig joins in from the  beginning of this tag and contains a further 3 copies of the 120bp  motif  The gap probably holds 2 copies of this element, which would suggest a total of 6 copies  There are then 52 copies of an 11bp motif beginning at 27350  Because of the repetitive nature of this region, some of the bases  between the 2 marker points may be ambiguous.  Where no base can be called, an n has been left  No further work is planned on this gap"
CHROMOSOME_III	assembly_tag	annotation	3445554	3445564	.	+	.	Note "read may be mis-assembled"
CHROMOSOME_III	assembly_tag	annotation	3446987	3446987	.	+	.	Note "marker point 2"
CHROMOSOME_III	assembly_tag	annotation	3451338	3451349	.	+	.	Note "50 base-pair rule used here. "
CHROMOSOME_III	assembly_tag	annotation	3452171	3452174	.	+	.	Note "left end of C34C12"
CHROMOSOME_III	assembly_tag	annotation	3452171	3452175	.	+	.	Note "Begining of overlap with C34C12"
CHROMOSOME_III	assembly_tag	annotation	3459605	3459608	.	+	.	Note "end of K01A11"
CHROMOSOME_III	assembly_tag	annotation	3463808	3463818	.	+	.	Note "10 T's -best guess (could be 9-12) "
CHROMOSOME_III	assembly_tag	annotation	3466995	3467203	.	+	.	Note "single stranded with terminators"
CHROMOSOME_III	assembly_tag	annotation	3467204	3467421	.	+	.	Note "single stranded with terminators"
CHROMOSOME_III	assembly_tag	annotation	3468069	3468089	.	+	.	Note "single stranded with terminators"
CHROMOSOME_III	assembly_tag	annotation	3468384	3468438	.	+	.	Note "single stranded with terminators"
CHROMOSOME_III	assembly_tag	annotation	3468476	3468476	.	+	.	Note "unable to call this base terminators etc. tried."
CHROMOSOME_III	assembly_tag	annotation	3486826	3486829	.	+	.	Note "beginning of M01F1"
CHROMOSOME_III	assembly_tag	annotation	3486826	3486830	.	+	.	Note "Beginning of M01F1 @ position 9  Overlapping with C34C12"
CHROMOSOME_III	assembly_tag	annotation	3535572	3535685	.	+	.	Note "region covered by a single read only terms and primers.  All pcrs across region failed.  This single read was found by screening Phagemid libraries and was the only real clone recovered"
CHROMOSOME_III	assembly_tag	annotation	3536552	3536552	.	+	.	Note "T has high G background on most reads but the evidence suggests the T is  real"
CHROMOSOME_III	assembly_tag	annotation	3536673	3536674	.	+	.	Note "edited to GG. S1 reads show clear GG, but terminators call GGG.  Terms do however have the  spacing of 2 Gs, and none of them show 3 clear peaks, so the evidence suggests GG"
CHROMOSOME_III	assembly_tag	annotation	3536939	3536941	.	+	.	Note "edited to 3Cs, primer and terminator data agree with this.  2 terminator walks have the spacing of 4 Cs, but both were run on the same gel,  suggesting a gel artifact."
CHROMOSOME_III	assembly_tag	annotation	3558475	3558481	.	+	.	Note "Start of C48D5"
CHROMOSOME_III	assembly_tag	annotation	3565294	3565297	.	+	.	Note "End  of C54C6"
CHROMOSOME_III	assembly_tag	annotation	3566749	3566890	.	+	.	Note "ss with term, coming out of difficult  repeat region, unable to get negative reads to work"
CHROMOSOME_III	assembly_tag	annotation	3566820	3566820	.	+	.	Note "Data a little messy, but this base is most probably an A."
CHROMOSOME_III	assembly_tag	annotation	3570381	3570387	.	+	.	Note "CTTC - Data indicates probably a T but  is a bit stoppy, even with terminators."
CHROMOSOME_III	assembly_tag	annotation	3591848	3591872	.	+	.	Note "s84h9.s2t goes into vector just 26 bases short of area which is double stranded. Hence used the 50 b.p. rule  and just put terminator, s86g4.s1t,  across."
CHROMOSOME_III	assembly_tag	annotation	3596741	3596745	.	+	.	Note "Start of C32A3"
CHROMOSOME_III	assembly_tag	annotation	3596743	3596746	.	+	.	Note "beginning of C32A3"
CHROMOSOME_III	assembly_tag	annotation	3600813	3600816	.	+	.	Note "end of C48D5"
CHROMOSOME_III	assembly_tag	annotation	3611230	3611276	.	+	.	Note "doulbe-stranding failed with 4  different oligos.  I have put a terminator across the other strand to check for compressions"
CHROMOSOME_III	assembly_tag	annotation	3611327	3611340	.	+	.	Note "sequence messy due to run of Cs, but probably correct"
CHROMOSOME_III	assembly_tag	annotation	3611343	3611363	.	+	.	Note "run of Gs, not double-sranded all the  way aross.  Number of Gs defined by Sequenase run  terminators run on either side up to run of Gs"
CHROMOSOME_III	assembly_tag	annotation	3611379	3611475	.	+	.	Note "region to right of Gs single-stranded  only, but covered with terminators, so no suspected compressions have been found"
CHROMOSOME_III	assembly_tag	annotation	3612816	3612836	.	+	.	Note "number of Gs unsure"
CHROMOSOME_III	assembly_tag	annotation	3612839	3612860	.	+	.	Note "negative strand only, but terminated to check against compressions"
CHROMOSOME_III	assembly_tag	annotation	3615996	3615996	.	+	.	Note "terminators on both strnds say 2 clear  Cs  non terminator reads call a T, but are less clear.   I think CC is correct"
CHROMOSOME_III	assembly_tag	annotation	3616537	3616537	.	+	.	Note "point mutation of A to T on single read"
CHROMOSOME_III	assembly_tag	annotation	3618791	3618816	.	+	.	Note "not double-stranded through run of Cs, but terminators run to check for compressions"
CHROMOSOME_III	assembly_tag	annotation	3624211	3624218	.	+	.	Note "one read has this sequence deleted, It is present in all other + and - reads."
CHROMOSOME_III	assembly_tag	annotation	3629117	3629140	.	+	.	Note "single-stranded, but with a terminator to confirm"
CHROMOSOME_III	assembly_tag	annotation	3632323	3632354	.	+	.	Note "single-stranded, with terminators to  solve potential compressions"
CHROMOSOME_III	assembly_tag	annotation	3637155	3637155	.	+	.	Note "single read has point mutation  of G to T"
CHROMOSOME_III	assembly_tag	annotation	3641896	3641902	.	+	.	Note "?difficult region from pcrs used 'best guess' sequence"
CHROMOSOME_III	assembly_tag	annotation	3641896	3642145	.	+	.	Note "single-stranded"
CHROMOSOME_III	assembly_tag	annotation	3641899	3641899	.	+	.	Note "T > A MUTATION IN PCR FRAGMENT"
CHROMOSOME_III	assembly_tag	annotation	3642147	3642151	.	+	.	Note "sequence from pcr fragment. Not 100% certain over these 5 bases used best call of terminators"
CHROMOSOME_III	assembly_tag	Finished	3642151	3642151	.	+	.	Note "Left: "
CHROMOSOME_III	assembly_tag	annotation	3642151	3642154	.	+	.	Note "beginning of C46f11"
CHROMOSOME_III	assembly_tag	Clone	3642151	3642154	.	+	.	Note "left end: C46F11"
CHROMOSOME_III	assembly_tag	annotation	3662682	3662682	.	+	.	Note "dificult region where cosmid pcrs have failed.  Data suggests an A, but background is high so there is some doubt"
CHROMOSOME_III	assembly_tag	annotation	3666504	3666522	.	+	.	Note "region that follows, represents 7 copies of a 65bp tandem repeat consensus ATTATTTTTATTCGTCTTATAATTTTAGAAAATTTTCAATAAAAATTTAAGACACTAATAAAAT  We were unable to join this using just sequence data alone, and suggest this is due to variation in the consensus sequence within different clones.  A phenomenon also seen in pcr across the region.  Restrition digest data suggests a 3.2 bp band between 2 flanking StuI sites, so the 2 contigs have been joined and the data edited to a consensus over this region."
CHROMOSOME_III	assembly_tag	annotation	3666888	3666888	.	+	.	Note "probablyA part of tandem repeat"
CHROMOSOME_III	assembly_tag	Clone	3667692	3667695	.	+	.	Note "left end: T27D1"
CHROMOSOME_III	assembly_tag	Finished	3667796	3667796	.	+	.	Note "Right: "
CHROMOSOME_III	assembly_tag	annotation	3676890	3676893	.	+	.	Note "Beginning of T27D1 edit @ position 14774. End of C46F11 edit. End of C46F11 @ postion 22947. "
CHROMOSOME_III	assembly_tag	annotation	3676890	3676893	.	+	.	Note "Beginning of T27D1 edit.  "
CHROMOSOME_III	assembly_tag	annotation	3679990	3679990	.	+	.	Note "Point mutation on single PCR clone. A changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3679997	3679997	.	+	.	Note "Point mutation on single PCR clone. T changed to C"
CHROMOSOME_III	assembly_tag	annotation	3680035	3680035	.	+	.	Note "Point mutation on a single PCR clone. T changed to a G "
CHROMOSOME_III	assembly_tag	annotation	3680078	3680078	.	+	.	Note "Point mutation on a single PCR clone. A changed to a T"
CHROMOSOME_III	assembly_tag	annotation	3680086	3680086	.	+	.	Note "Point muation on a single PCR clone. G changed to an A"
CHROMOSOME_III	assembly_tag	annotation	3680168	3680169	.	-	.	Note "Single PCR clone has ten T's. Consesus has nine "
CHROMOSOME_III	assembly_tag	annotation	3680168	3680169	.	-	.	Note "Single PCR clone has ten T's. Consensus has nine T's."
CHROMOSOME_III	assembly_tag	annotation	3680169	3680169	.	+	.	Note "Single PCR clone has ten T's. The consensus has nine T's."
CHROMOSOME_III	assembly_tag	annotation	3680170	3680170	.	+	.	Note "Point mutation on a single PCR clone. T changed to an A"
CHROMOSOME_III	assembly_tag	annotation	3680240	3680240	.	+	.	Note "Point mutation on a single PCR clone. A changed to G"
CHROMOSOME_III	assembly_tag	annotation	3680247	3680247	.	+	.	Note "Point muation on asingle PCR clone. G changed to an A"
CHROMOSOME_III	assembly_tag	annotation	3680299	3680299	.	+	.	Note "Point mutation on a single PCR clone. T changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3680328	3680328	.	+	.	Note "Point muation on a single PCR clone T changed to an A"
CHROMOSOME_III	assembly_tag	annotation	3680336	3680336	.	+	.	Note "Point muation on a single PCR clone T changed to a C"
CHROMOSOME_III	assembly_tag	annotation	3680358	3680358	.	+	.	Note "Single PCR clone has eight A's. The consensus has seven A's."
CHROMOSOME_III	assembly_tag	annotation	3680373	3680373	.	+	.	Note "Point mutation on a single PCR clone A changed to G"
CHROMOSOME_III	assembly_tag	annotation	3680380	3680380	.	+	.	Note "Point mutation on single PCR clone A changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3680412	3680412	.	+	.	Note "point mutation on single PCR clone T changed to C"
CHROMOSOME_III	assembly_tag	annotation	3680454	3680454	.	+	.	Note "Point mutation on single PCR clone T changed to C "
CHROMOSOME_III	assembly_tag	annotation	3680492	3680492	.	+	.	Note "Point mutatiopn on a single PCR clone. A changed to a G."
CHROMOSOME_III	assembly_tag	annotation	3680494	3680494	.	+	.	Note "Point mutation on a single PCR clone. A changed to a T"
CHROMOSOME_III	assembly_tag	annotation	3680687	3680687	.	+	.	Note "point mutation on a single PCR clone. G changed to an A."
CHROMOSOME_III	assembly_tag	annotation	3680690	3680690	.	+	.	Note "Point mutation on a single PCR clone. T changed to a C"
CHROMOSOME_III	assembly_tag	annotation	3680786	3680786	.	+	.	Note "Point mutation on PCR clone T changed to a C"
CHROMOSOME_III	assembly_tag	annotation	3680796	3680796	.	+	.	Note "Point mutation on single PCR clone. T changed to an A"
CHROMOSOME_III	assembly_tag	annotation	3680831	3680831	.	+	.	Note "Point mutation on single PCR clone A changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3680842	3680842	.	+	.	Note "Point mutation on a single PCR clone. G changed to an A"
CHROMOSOME_III	assembly_tag	annotation	3681007	3681015	.	+	.	Note "2 reads (one walk, one pcr product) read GAAGA to the left of this sequence then go into vector"
CHROMOSOME_III	assembly_tag	annotation	3681065	3681065	.	+	.	Note "Point mutation on a single PCR clone. A changed to a T"
CHROMOSOME_III	assembly_tag	annotation	3681272	3681272	.	+	.	Note "Point mutation on a single PCR clone. A changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3681366	3681366	.	+	.	Note "Point mutation on single PCR clone. A changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3681418	3681418	.	+	.	Note "Point mutation on a single PCR clone A changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3681501	3681501	.	+	.	Note "Point mutation on a single PCR clone. T changed to a C"
CHROMOSOME_III	assembly_tag	annotation	3681524	3681524	.	+	.	Note "Point mutation on a singgle PCR clone. A changed to a G"
CHROMOSOME_III	assembly_tag	annotation	3681525	3681525	.	+	.	Note "Point mutation on a sinlge PCR clone. G changed to an A"
CHROMOSOME_III	assembly_tag	annotation	3685060	3685063	.	+	.	Note "End of C46F11 @ position 22947."
CHROMOSOME_III	assembly_tag	annotation	3699347	3699351	.	+	.	Note "End of T27D1 edit @ postion 37231 + 100 base overlap = 37331  Beginning of C14B1"
CHROMOSOME_III	assembly_tag	annotation	3699348	3699351	.	+	.	Note "beginning of C14B1"
CHROMOSOME_III	assembly_tag	annotation	3699348	3699351	.	+	.	Note "Beginning of C14B1."
CHROMOSOME_III	assembly_tag	annotation	3707519	3707522	.	+	.	Note "?end of left hand overlap??"
CHROMOSOME_III	assembly_tag	annotation	3707520	3707523	.	+	.	Note "?end of left hand overlap??"
CHROMOSOME_III	assembly_tag	annotation	3728587	3728590	.	+	.	Note "beginning of F34D10"
CHROMOSOME_III	assembly_tag	annotation	3728589	3728592	.	+	.	Note "beginning of F34D10"
CHROMOSOME_III	assembly_tag	annotation	3728589	3728592	.	+	.	Note "beginning of F34D10"
CHROMOSOME_III	assembly_tag	comment	3730494	3730515	.	+	.	Note "?messy"
CHROMOSOME_III	assembly_tag	comment	3733035	3733040	.	+	.	Note "?really e2"
CHROMOSOME_III	assembly_tag	comment	3733528	3733535	.	+	.	Note "?wrong name (e2)"
CHROMOSOME_III	assembly_tag	annotation	3760704	3760708	.	+	.	Note "Left Hand end of C44F1 "
CHROMOSOME_III	assembly_tag	annotation	3764182	3764182	.	+	.	Note "abi machine fault possibly more than likely.  See if any other y50d7 reads have the same I'd edit this.  If other reads show the same edit and leave.  If just this read edit and annotate as mutation"
CHROMOSOME_III	assembly_tag	annotation	3768357	3768360	.	+	.	Note "putative end of F34D10"
CHROMOSOME_III	assembly_tag	annotation	3774914	3774914	.	+	.	Note "point mutation of a G to a T in traces 1856 and 1857"
CHROMOSOME_III	assembly_tag	annotation	3777069	3777069	.	+	.	Note "point mutation of a singlr base  A to G"
CHROMOSOME_III	assembly_tag	cosmid	3779804	3779807	.	+	.	Note "vector: Left hand end of T24A11"
CHROMOSOME_III	assembly_tag	annotation	3779804	3779807	.	+	.	Note "Start of T24A11"
CHROMOSOME_III	assembly_tag	annotation	3786831	3786831	.	+	.	Note "singe read has extra CT"
CHROMOSOME_III	assembly_tag	annotation	3799491	3799512	.	+	.	Note "Single stranded with terminator"
CHROMOSOME_III	assembly_tag	annotation	3801504	3801560	.	+	.	Note "single stranded with terminator"
CHROMOSOME_III	assembly_tag	annotation	3806176	3806176	.	+	.	Note "point mutation in PCR"
CHROMOSOME_III	assembly_tag	annotation	3806320	3806320	.	+	.	Note "point mutation"
CHROMOSOME_III	assembly_tag	annotation	3806349	3806349	.	+	.	Note "Edited according to consensus although some traces may have a point mutation"
CHROMOSOME_III	assembly_tag	annotation	3806452	3806452	.	+	.	Note "point mutation of C to T on traces 1724, 1718, 1721, 1726"
CHROMOSOME_III	assembly_tag	annotation	3808483	3808483	.	+	.	Note "point mutatuion of A to G"
CHROMOSOME_III	assembly_tag	annotation	3808992	3809011	.	+	.	Note "single stranded with terminator across region"
CHROMOSOME_III	assembly_tag	cosmid	3810358	3810363	.	+	.	Note "vector: start of R13G10"
CHROMOSOME_III	assembly_tag	Clone	3828565	3828568	.	+	.	Note "left end: Beginning of C36A4"
CHROMOSOME_III	assembly_tag	Clone	3849403	3849408	.	+	.	Note "right end: End of R13G10"
CHROMOSOME_III	assembly_tag	Clone	3868610	3868613	.	+	.	Note "left end: Beginning of F13B10"
CHROMOSOME_III	assembly_tag	Clone	3868610	3868613	.	+	.	Note "left end: Beginning of F13B10"
CHROMOSOME_III	assembly_tag	Clone	3873202	3873205	.	+	.	Note "right end: End of C36A4"
CHROMOSOME_III	assembly_tag	annotation	3877449	3877479	.	+	.	Note "There proved to be an indeterminable number of Gs in this region. The current estimate is that the number of Gs is about 31 but sequence  beyond the run of Gs is poorly determined on the + strand. "
CHROMOSOME_III	assembly_tag	annotation	3877480	3877568	.	+	.	Note "Missing + d.s. following a large run of Gs : (approx. 90 bp missing) but available - strand is terminated."
CHROMOSOME_III	assembly_tag	annotation	3877711	3877735	.	+	.	Note "Missing approx. 24 bp  + d.s. but sequence confirmed by terminator on - strand."
CHROMOSOME_III	assembly_tag	Clone	3890463	3890466	.	+	.	Note "left end: Beginning of ZK1058"
CHROMOSOME_III	assembly_tag	annotation	3894937	3895253	.	+	.	Note "This is the beginning of an extensive region (approx 3kb) of multiple tandem repeats. There are regions which have not been sequenced on both strands. Five repeat elements have been  identified which are already known  (Naclerio et.al. (1992) J. Mol. Biol. 226, pp159-168 :  From restriction digest and PCR information we are missing copies of  element 3  and element 5 (in total, approx 800 bp are missing). The approx. copy number and size of each element is given in the tag annotation.  Element 1 :7 copies of Rc123 (a 123mer)."
CHROMOSOME_III	assembly_tag	Clone	3895028	3895032	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	Clone	3895150	3895156	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	annotation	3895254	3895403	.	+	.	Note "Element 1 : 7 copies of Rc123 (a 123mer) "
CHROMOSOME_III	assembly_tag	Clone	3895263	3895267	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	Clone	3895386	3895390	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	annotation	3895404	3895624	.	+	.	Note "7 copies of Rc123 (a 123mer)_"
CHROMOSOME_III	assembly_tag	Clone	3895498	3895502	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	Clone	3895621	3895626	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	annotation	3895625	3895777	.	+	.	Note "7 copies of Rc123 (a 123mer) "
CHROMOSOME_III	assembly_tag	Clone	3895734	3895736	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	annotation	3895897	3896216	.	+	.	Note "Element 2 : 8 copies of RcC9 (40mer)"
CHROMOSOME_III	assembly_tag	annotation	3896258	3896389	.	+	.	Note "Element 3 : a minimum of 33 copies of RcD1 (a 15mer). An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	annotation	3896390	3896488	.	+	.	Note "Element 3 : a minimum of 33 copies of RcD1 (a 15mer). An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	annotation	3896489	3896614	.	+	.	Note "Element 3 : a minimum of 33 copies of RcD1 (a 15mer). An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	annotation	3896615	3896755	.	+	.	Note "Element 3 : a minimum of 33 copies of RcD1 (a 15mer). An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	annotation	3896760	3896954	.	+	.	Note "Element 4 : 8 copies of Rc35 (a 35mer)."
CHROMOSOME_III	assembly_tag	annotation	3896955	3897038	.	+	.	Note "Element 4 : 8 copies of Rc35 (a 35mer)."
CHROMOSOME_III	assembly_tag	annotation	3897071	3897235	.	+	.	Note "Element 5 : a minimum of 15 copies of RcC9 (a 40mer). An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	annotation	3897236	3897326	.	+	.	Note "Element 5 : a minimum of 15 copies of RcC9 (a 40mer) from 28450 to 29060 bp. An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	annotation	3897327	3897502	.	+	.	Note "Element 5 : a minimum of 15 copies of RcC9 (a 40mer). An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	annotation	3897503	3897687	.	+	.	Note "Element 5 : a minimum of 15 copies of RcC9 (a 40mer). An unknown number of copies is missing here (see annotation at beginning of this repetitive region)."
CHROMOSOME_III	assembly_tag	Clone	3905418	3905421	.	+	.	Note "right end: End of F13B10"
CHROMOSOME_III	assembly_tag	Clone	3905418	3905421	.	+	.	Note "right end: end of F13B10"
CHROMOSOME_III	assembly_tag	Clone	3919461	3919464	.	+	.	Note "left end: Start of F37A8"
CHROMOSOME_III	assembly_tag	annotation	3926481	3926504	.	+	.	Note "OVERLAP WITH  ZK1058"
CHROMOSOME_III	assembly_tag	ignore	3926492	3926496	.	+	.	Note "cutoff (cloning vector): Lorist6 "
CHROMOSOME_III	assembly_tag	cosmid	3926492	3926496	.	+	.	Note "vector: "
CHROMOSOME_III	assembly_tag	Clone	3926497	3926500	.	+	.	Note "right end: "
CHROMOSOME_III	assembly_tag	ignore	3935326	3935330	.	+	.	Note "cutoff (cloning vector): Lorist6 "
CHROMOSOME_III	assembly_tag	annotation	3941266	3941283	.	+	.	Note "Beginning of overlap with R10E9 "
CHROMOSOME_III	assembly_tag	annotation	3960788	3960796	.	+	.	Note "END OF F37A8"
CHROMOSOME_III	assembly_tag	ignore	3960924	3960927	.	+	.	Note "cutoff (cloning vector): "
CHROMOSOME_III	assembly_tag	cosmid	3960924	3960927	.	+	.	Note "vector: "
CHROMOSOME_III	assembly_tag	Finished	3981802	3981807	.	+	.	Note "Left: Y1A5A"
CHROMOSOME_III	assembly_tag	Clone	3981902	3981907	.	+	.	Note "right end: R10E9"
CHROMOSOME_III	assembly_tag	annotation	3981902	3981907	.	+	.	Note "END OF R10E9"
CHROMOSOME_III	assembly_tag	cosmid	3982016	3982027	.	+	.	Note "vector: "
CHROMOSOME_III	assembly_tag	Finished	3987861	3987864	.	+	.	Note "Left: C36E8"
CHROMOSOME_III	assembly_tag	Clone	3987861	3987864	.	+	.	Note "left end: C36E8"
CHROMOSOME_III	assembly_tag	Clone	3987861	3987864	.	+	.	Note "left end: C36E8"
CHROMOSOME_III	assembly_tag	Finished	3987961	3987964	.	+	.	Note "Right: Y1A5A"
CHROMOSOME_III	assembly_tag	comment	3990419	3990419	.	+	.	Note "add C jes 30-12-01"
CHROMOSOME_III	assembly_tag	annotation	4018224	4018293	.	-	.	Note "single-stranded only (60bp). region has been terminated on the -ve strand."
CHROMOSOME_III	assembly_tag	Clone	4019566	4019569	.	-	.	Note "left end: T02C12"
CHROMOSOME_III	assembly_tag	Finished	4019666	4019669	.	+	.	Note "Right: C36E8"
CHROMOSOME_III	assembly_tag	annotation	4026626	4026631	.	+	.	Note "C36E8 ENDS"
CHROMOSOME_III	assembly_tag	annotation	4042226	4042237	.	+	.	Note "E03A3 BEGINS"
CHROMOSOME_III	assembly_tag	annotation	4052042	4052044	.	+	.	Note "only base that differs ! (in one clone only CTCC : in all others -10- reads CCCC)"
CHROMOSOME_III	assembly_tag	annotation	4055659	4055669	.	+	.	Note "End of T02C12"
CHROMOSOME_III	assembly_tag	annotation	4081423	4081432	.	+	.	Note "beginning of C03C10"
CHROMOSOME_III	assembly_tag	annotation	4081424	4081441	.	+	.	Note "beginning of C03C10"
CHROMOSOME_III	assembly_tag	annotation	4085208	4085228	.	+	.	Note "end of overlap with E03A3"
CHROMOSOME_III	assembly_tag	annotation	4102621	4102645	.	+	.	Note "start of overlap with C30D11"
CHROMOSOME_III	assembly_tag	cosmid	4125157	4125171	.	+	.	Note "vector: From here onwards is C30D11 Before here is C03C10"
CHROMOSOME_III	assembly_tag	annotation	4142626	4142629	.	+	.	Note "Beginning of C16C10"
CHROMOSOME_III	assembly_tag	cosmid	4142626	4142639	.	+	.	Note "vector: C16C10 starts here"
CHROMOSOME_III	assembly_tag	annotation	4145647	4145649	.	+	.	Note "2 -ve clones were tried and didn't work but there is a +ve terminator across so edited"
CHROMOSOME_III	assembly_tag	annotation	4146877	4146880	.	+	.	Note "End of C30D11"
CHROMOSOME_III	assembly_tag	annotation	4154920	4154922	.	+	.	Note "Edited to GTT - Andrew's advice"
CHROMOSOME_III	assembly_tag	annotation	4166607	4166618	.	+	.	Note "+ reads say 12 A's - reads say 11 A's"
CHROMOSOME_III	assembly_tag	annotation	4183106	4183106	.	+	.	Note "Definitely a G Other reads clearly state A"
CHROMOSOME_III	assembly_tag	annotation	4183831	4183836	.	+	.	Note "Beginning of R74"
CHROMOSOME_III	assembly_tag	annotation	4183831	4183847	.	+	.	Note "beginning of R74"
CHROMOSOME_III	assembly_tag	annotation	4183922	4183938	.	+	.	Note "end of C16C10"
CHROMOSOME_III	assembly_tag	annotation	4183935	4183938	.	+	.	Note "End of C16C10"
CHROMOSOME_III	assembly_tag	annotation	4208576	4208579	.	+	.	Note "beginning of F43C1"
CHROMOSOME_III	assembly_tag	annotation	4208578	4208586	.	+	.	Note "beginning of F43C1"
CHROMOSOME_III	assembly_tag	annotation	4209206	4209267	.	+	.	Note "685bp to 746bp = region of poor data on one strand only (-) part of an area of tandem repeats 5 copies of 22bp element GATCCCACTCAAACACCAAGTA"
CHROMOSOME_III	assembly_tag	annotation	4224084	4224089	.	+	.	Note "end of R74"
CHROMOSOME_III	assembly_tag	Finished	4243660	4243663	.	+	.	Note "Left: Y44F5A"
CHROMOSOME_III	assembly_tag	annotation	4243760	4243763	.	+	.	Note "end of F43C1"
CHROMOSOME_III	assembly_tag	Clone	4243760	4243763	.	+	.	Note "right end: F43C1"
CHROMOSOME_III	assembly_tag	Clone	4249702	4249705	.	+	.	Note "left end: T08A11 left"
CHROMOSOME_III	assembly_tag	Clone	4249702	4249705	.	+	.	Note "left end: T08A11"
CHROMOSOME_III	assembly_tag	Finished	4249702	4249705	.	+	.	Note "Left: "
CHROMOSOME_III	assembly_tag	Finished	4249802	4249805	.	-	.	Note "Right: Y44F5A"
CHROMOSOME_III	assembly_tag	annotation	4250129	4250139	.	+	.	Note "insecure"
CHROMOSOME_III	assembly_tag	annotation	4254115	4254127	.	+	.	Note "left end of stem"
CHROMOSOME_III	assembly_tag	annotation	4255451	4255522	.	+	.	Note "ss, but matches inv repeat "
CHROMOSOME_III	assembly_tag	annotation	4257144	4257156	.	+	.	Note "right end of stem  <GGGAGCATAGGCC"
CHROMOSOME_III	assembly_tag	Clone	4269081	4269086	.	+	.	Note "left end: R10E4 left pJB8 rev"
CHROMOSOME_III	assembly_tag	Clone	4269081	4269086	.	+	.	Note "left end: left end of R10E4"
CHROMOSOME_III	assembly_tag	Finished	4269181	4269181	.	+	.	Note "Right: "
CHROMOSOME_III	assembly_tag	annotation	4278030	4278107	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4278108	4278185	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4278186	4278263	.	+	.	Note "terminated, not ds-ed "
CHROMOSOME_III	assembly_tag	annotation	4278264	4278341	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4278342	4278405	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4278406	4278483	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4278484	4278561	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4278562	4278639	.	+	.	Note "terminated not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4278640	4278672	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4282558	4282563	.	+	.	Note "poor quality read confirmed by term on opposite strand"
CHROMOSOME_III	assembly_tag	Clone	4284945	4284948	.	+	.	Note "right end: right end of T08A11"
CHROMOSOME_III	assembly_tag	annotation	4284949	4284962	.	+	.	Note "terminated, not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285478	4285516	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285517	4285593	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285594	4285671	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285672	4285748	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285749	4285826	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285827	4285904	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285905	4285980	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4285981	4286007	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286008	4286085	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4286085	4286099	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4286100	4286176	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286177	4286185	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286278	4286354	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286355	4286399	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286572	4286591	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286642	4286680	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286681	4286753	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286753	4286831	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4286832	4286851	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4292179	4292256	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4292257	4292334	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4292335	4292341	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4292342	4292419	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4292420	4292425	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4292723	4292801	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4292802	4292821	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4293009	4293039	.	+	.	Note "terminated, not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4293797	4293825	.	+	.	Note "terminated not ds-ed"
CHROMOSOME_III	assembly_tag	annotation	4293826	4293903	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4293904	4293981	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4293982	4294059	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4294060	4294137	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4294138	4294215	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4294216	4294234	.	+	.	Note "terminated not double stranded"
CHROMOSOME_III	assembly_tag	annotation	4297906	4297982	.	+	.	Note "terminated other strand"
CHROMOSOME_III	assembly_tag	annotation	4297983	4298010	.	+	.	Note "terminated other strand"
CHROMOSOME_III	assembly_tag	annotation	4300263	4300268	.	+	.	Note "looping out - terminate"
CHROMOSOME_III	assembly_tag	Finished	4305146	4305151	.	+	.	Note "Left: H38K22"
CHROMOSOME_III	assembly_tag	Clone	4305245	4305250	.	+	.	Note "right end: R10E4"
CHROMOSOME_III	assembly_tag	Clone	4305245	4305250	.	+	.	Note "right end: right end R10E4"
CHROMOSOME_III	assembly_tag	annotation	4326733	4326734	.	+	.	Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[X] Other \nComment\nthis clone, qa30b8 has deleted these two base pairs"
CHROMOSOME_III	assembly_tag	Clone	4330652	4330655	.	+	.	Note "left end: B0285"
CHROMOSOME_III	assembly_tag	Finished	4330752	4330755	.	+	.	Note "Right: H38K22"
CHROMOSOME_III	assembly_tag	annotation	4425194	4425198	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4431125	4431135	.	+	.	Note "?end of R07E5"
CHROMOSOME_III	assembly_tag	annotation	4452405	4452409	.	+	.	Note "Lorist6 start of F56F3"
CHROMOSOME_III	assembly_tag	annotation	4501918	4501922	.	+	.	Note "Lorist6 "
CHROMOSOME_III	assembly_tag	cosmid	4501918	4501968	.	+	.	Note "vector: "
CHROMOSOME_III	assembly_tag	annotation	4516961	4517034	.	+	.	Note "deletion of F10G11 starts here"
CHROMOSOME_III	assembly_tag	cosmid	4523884	4523935	.	+	.	Note "vector: C07G2 from here it is F25F2/F10G11"
CHROMOSOME_III	assembly_tag	annotation	4530218	4530283	.	+	.	Note "F10G11 deletion ends here"
CHROMOSOME_III	assembly_tag	annotation	4531304	4531368	.	+	.	Note "end of F25F2 from here it is F10G11"
CHROMOSOME_III	assembly_tag	annotation	4531318	4531368	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4531319	4531368	.	+	.	Note "overlap with F25F2edit no further than  here"
CHROMOSOME_III	assembly_tag	comment	4531698	4531699	.	-	.	Note "this C present in genomic sequence only, not in the F10G11 subclones"
CHROMOSOME_III	assembly_tag	annotation	4531699	4531700	.	+	.	Note "this C present in genomic sequence only not present in original F10G11 subclones"
CHROMOSOME_III	assembly_tag	annotation	4533551	4533555	.	+	.	Note "pJB8 M88 end"
CHROMOSOME_III	assembly_tag	annotation	4533551	4533606	.	+	.
CHROMOSOME_III	assembly_tag	cosmid	4533551	4533606	.	+	.	Note "vector: M88"
CHROMOSOME_III	assembly_tag	annotation	4533552	4533606	.	+	.	Note "end of M88 overlap, edit up to here"
CHROMOSOME_III	assembly_tag	annotation	4533552	4533606	.	+	.	Note "M88 LEAVE"
CHROMOSOME_III	assembly_tag	annotation	4566173	4566177	.	+	.	Note "Lorist6 "
CHROMOSOME_III	assembly_tag	Finished	4566173	4566177	.	+	.	Note "Left: F35G12"
CHROMOSOME_III	assembly_tag	annotation	4575967	4576012	.	-	.	Note "overlap with M88 ends"
CHROMOSOME_III	assembly_tag	ignore	4605781	4605784	.	+	.	Note "cutoff (cloning vector): Lorist6 "
CHROMOSOME_III	assembly_tag	annotation	4605781	4605789	.	+	.	Note "Left end of F10F2"
CHROMOSOME_III	assembly_tag	annotation	4605781	4605784	.	-	.
CHROMOSOME_III	assembly_tag	Finished	4605876	4605881	.	-	.	Note "Right: F35G12"
CHROMOSOME_III	assembly_tag	ignore	4609986	4609996	.	+	.	Note "cutoff (cloning vector): "
CHROMOSOME_III	assembly_tag	annotation	4609986	4609996	.	+	.	Note "Right end of F35G12"
CHROMOSOME_III	assembly_tag	annotation	4626268	4626283	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4626268	4626340	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4626268	4626344	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4626284	4626359	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4626341	4626364	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4626345	4626364	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4626360	4626364	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4645412	4645434	.	+	.	Note "Start of T23F11"
CHROMOSOME_III	assembly_tag	ignore	4645413	4645417	.	+	.	Note "cutoff (cloning vector): Lorist2 "
CHROMOSOME_III	assembly_tag	ignore	4645413	4645417	.	+	.	Note "cutoff (cloning vector): Lorist2 l end of Junes cosmid T23F11 "
CHROMOSOME_III	assembly_tag	annotation	4645413	4645418	.	+	.	Note "Left end of T23F11"
CHROMOSOME_III	assembly_tag	cosmid	4645413	4645418	.	+	.	Note "vector: "
CHROMOSOME_III	assembly_tag	annotation	4648138	4648163	.	+	.	Note "End of F10F2"
CHROMOSOME_III	assembly_tag	ignore	4648154	4648158	.	+	.	Note "cutoff (cloning vector): Lorist6 "
CHROMOSOME_III	assembly_tag	cosmid	4648154	4648163	.	+	.	Note "vector: "
CHROMOSOME_III	assembly_tag	annotation	4648291	4648330	.	+	.	Note "No negative strand: +ve strand terminators 2880-2917"
CHROMOSOME_III	assembly_tag	annotation	4648291	4648292	.	-	.
CHROMOSOME_III	assembly_tag	annotation	4649401	4649477	.	+	.	Note "Black tagged 3989 - 4337 No negative strand Terminators on positive strand"
CHROMOSOME_III	assembly_tag	annotation	4649478	4649488	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649484	4649560	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649489	4649566	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649561	4649636	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649567	4649644	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649637	4649713	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649645	4649696	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649714	4649732	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4649728	4649750	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4650375	4650430	.	+	.	Note "Poor negative strand; v. good positive strand terminators 4963-5018"
CHROMOSOME_III	assembly_tag	ignore	4651582	4651585	.	+	.	Note "cutoff (cloning vector): Lorist2 "
CHROMOSOME_III	assembly_tag	annotation	4656528	4656590	.	+	.	Note "Poor negative strand; v. good +ve  strand terminators 11116-11178"
CHROMOSOME_III	assembly_tag	annotation	4656860	4656933	.	+	.	Note "?Poor positive strand; v.good positive strand terminators 11448-11521"
CHROMOSOME_III	assembly_tag	annotation	4658765	4658789	.	+	.	Note "This clone has a C missing, but all  the others agree ! Position 13,364"
CHROMOSOME_III	assembly_tag	annotation	4672702	4672728	.	+	.	Note "This clone has an A missing with  respect to the other clones covering  this region. Position 27,302"
CHROMOSOME_III	assembly_tag	annotation	4674811	4674839	.	+	.	Note "This clone has two G's missing with respect to the other reads in this  region. Positions 29,413 & 29,414"
CHROMOSOME_III	assembly_tag	annotation	4675222	4675298	.	+	.	Note "No positive strand, good negative  strand terminators 29810-29918 "
CHROMOSOME_III	assembly_tag	annotation	4675298	4675331	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676553	4676628	.	+	.	Note "Poor walk on -ve strand but good terminators on +ve strand. Positions 31,141 - 31,580"
CHROMOSOME_III	assembly_tag	annotation	4676629	4676630	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676631	4676658	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676658	4676734	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676735	4676810	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676811	4676821	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676818	4676895	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676896	4676968	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4676969	4676990	.	+	.
CHROMOSOME_III	assembly_tag	annotation	4677440	4677469	.	+	.	Note "Start of T04A8"
CHROMOSOME_III	assembly_tag	ignore	4677445	4677449	.	+	.	Note "cutoff (cloning vector): Lorist2 "
CHROMOSOME_III	assembly_tag	annotation	4677445	4677456	.	+	.	Note "The start of T04A8 ........ "
CHROMOSOME_III	assembly_tag	annotation	4683124	4683136	.	+	.	Note "The end of T23F11 ....."
CHROMOSOME_III	assembly_tag	annotation	4716914	4716917	.	+	.	Note "left F17C8"
CHROMOSOME_III	assembly_tag	annotation	4716926	4716926	.	+	.	Note "The last read of F17C8, but I haven't  the actual ends of this cosmid - Janes problem not mine."
CHROMOSOME_III	assembly_tag	annotation	4721788	4721792	.	+	.	Note "Lorist2 right T04A8"
CHROMOSOME_III	assembly_tag	annotation	4724088	4724090	.	+	.	Note "variable number of A's read "
CHROMOSOME_III	assembly_tag	annotation	4739096	4739105	.	+	.	Note "one less T"
CHROMOSOME_III	assembly_tag	Finished	4749255	4749258	.	+	.	Note "Left: VB0393L"
CHROMOSOME_III	assembly_tag	Clone	4749355	4749358	.	+	.	Note "right end: F17C8 chimera break point"
CHROMOSOME_III	assembly_tag	annotation	4749357	4749358	.	+	.	Note "B0393 diverges to the left"
CHROMOSOME_III	assembly_tag	annotation	4750760	4750948	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n"
CHROMOSOME_III	assembly_tag	annotation	4751019	4751318	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n"
CHROMOSOME_III	assembly_tag	Finished	4751555	4751558	.	+	.	Note "Left: B0393"
CHROMOSOME_III	assembly_tag	Clone	4751555	4751558	.	+	.	Note "left end: B0393"
CHROMOSOME_III	assembly_tag	Clone	4751555	4751558	.	+	.	Note "left end: B0393\n"
CHROMOSOME_III	assembly_tag	Finished	4751655	4751658	.	+	.	Note "Right: VB0393L"
CHROMOSOME_III	assembly_tag	annotation	4752758	4752765	.	-	.	Note "leftward, diverges fron F17C8"
CHROMOSOME_III	assembly_tag	annotation	4759311	4759315	.	+	.	Note "F17C8 right\n"
CHROMOSOME_III	assembly_tag	annotation	4759311	4759315	.	-	.	Note "F17C8 right\n"
CHROMOSOME_III	assembly_tag	annotation	4768767	4768767	.	+	.	Note "G deleted in this subclone"
CHROMOSOME_III	assembly_tag	Clone	4782299	4782302	.	+	.	Note "left end: C38D4"
CHROMOSOME_III	assembly_tag	annotation	4782299	4782311	.	+	.
CHROMOSOME_III	assembly_tag	Finished	4782399	4782402	.	+	.	Note "Right: B0393"
CHROMOSOME_III	assembly_tag	annotation	4789912	4789920	.	+	.	Note "Right hand end of B0393"
CHROMOSOME_III	assembly_tag	annotation	4814975	4814986	.	+	.	Note "Start of F26A1 (Right hand end)"
CHROMOSOME_III	assembly_tag	Finished	9098570	9098579	.	+	.	Note "Left: "
CHROMOSOME_III	assembly_tag	annotation	9101121	9101311	.	+	.	Note "First select a Feature -\n[x] Unsure\n[ ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\ninverted repeat"
CHROMOSOME_III	assembly_tag	Finished	9112403	9112413	.	+	.	Note "Right: "
CHROMOSOME_III	assembly_tag	Finished	9433791	9433794	.	-	.	Note "Left: F54C8"
CHROMOSOME_III	assembly_tag	Finished	9456788	9456791	.	+	.	Note "Right: F54C8"
CHROMOSOME_III	assembly_tag	Finished	9956649	9956652	.	-	.	Note "Left: R10E12"
CHROMOSOME_III	assembly_tag	comment	9986897	9986899	.	+	.	Note "pJB8 "
CHROMOSOME_III	assembly_tag	Finished	9987146	9987149	.	-	.	Note "Right: R10E12"
CHROMOSOME_III	assembly_tag	comment	9995270	9995287	.	+	.	Note "?end of R10E12 overlap"
CHROMOSOME_III	assembly_tag	comment	9995281	9995285	.	+	.	Note "pJB8 "
CHROMOSOME_III	assembly_tag	comment	9996654	9996662	.	+	.	Note "Discrepancy on both -ve strands terminate"
CHROMOSOME_III	assembly_tag	comment	9996927	9996946	.	+	.	Note "from GATTTTGGCCCGTTT to GATTTTGCCCGTTT"
CHROMOSOME_III	assembly_tag	comment	9999934	9999936	.	+	.	Note "Missing base on only +ve strand "
CHROMOSOME_III	assembly_tag	comment	10001319	10001322	.	+	.	Note "Discrepancy between strands "
CHROMOSOME_III	assembly_tag	comment	10001336	10001338	.	+	.	Note "Discreopancy again "
CHROMOSOME_III	assembly_tag	comment	10001897	10001902	.	+	.	Note "?oops! Re do with ice walk or something"
CHROMOSOME_III	assembly_tag	comment	10001926	10001928	.	+	.	Note "Discrepancy between only 2  strands available Same for next 3 tags!! "
CHROMOSOME_III	assembly_tag	comment	10001926	10001928	.	+	.	Note "Discreapncy between only 2  strands available "
CHROMOSOME_III	assembly_tag	comment	10001935	10001937	.	+	.	Note "Same again"
CHROMOSOME_III	assembly_tag	comment	10001935	10001937	.	+	.	Note "Disrepancy"
CHROMOSOME_III	assembly_tag	comment	10001965	10001982	.	+	.	Note "Eh?! "
CHROMOSOME_III	assembly_tag	comment	10003257	10003266	.	+	.	Note "needs double stranding  read gappy and no other reads"
CHROMOSOME_III	assembly_tag	comment	10005739	10005757	.	+	.	Note "?start of M04D8 overlap"
CHROMOSOME_III	assembly_tag	comment	10009640	10009642	.	+	.	Note "All +ve strands say 1G. All -ve strands say 2G's"
CHROMOSOME_III	assembly_tag	comment	10017109	10017146	.	+	.	Note "Up to here is my part of the  M04D8 overlap!!"
CHROMOSOME_III	assembly_tag	annotation	10038459	10038462	.	+	.	Note "beginning of T16G12"
CHROMOSOME_III	assembly_tag	annotation	10044234	10044237	.	+	.	Note "end of overlap with M04D8"
CHROMOSOME_III	assembly_tag	annotation	10076372	10076375	.	+	.	Note "beginning of T16H12"
CHROMOSOME_III	assembly_tag	annotation	10110778	10110784	.	+	.	Note "Start analysis here to overlap with T16H12 submitted data by 100 bases"
CHROMOSOME_III	assembly_tag	annotation	10111094	10111098	.	+	.	Note "End of T16H12"
CHROMOSOME_III	assembly_tag	annotation	10123276	10123405	.	+	.	Note "very poor data across this region covered only by sequence from PCR products (from cosmid)"
CHROMOSOME_III	assembly_tag	annotation	10126947	10126990	.	+	.	Note "These 43bp appear to be deleted in a sub-species of the cosmid used in sequencing. Genomic PCR confirms that these bases are present in genomic DNA."
CHROMOSOME_III	assembly_tag	annotation	10130530	10130550	.	+	.	Note "Number of C's estimated to be 21 from one terminator read only. No other good reads to confirm this"
CHROMOSOME_III	assembly_tag	annotation	10132959	10132986	.	+	.	Note "No good data on + strand for approx 30bp but good data on other strand. Adjacent to a (TC)n repeat : about 40 copies (i.e. 80bp long)"
CHROMOSOME_III	assembly_tag	annotation	10138508	10138511	.	+	.	Note "Left end of K08E5  "
CHROMOSOME_III	assembly_tag	annotation	10138508	10138518	.	+	.
CHROMOSOME_III	assembly_tag	annotation	10149970	10149973	.	+	.	Note "?End of ZK1128"
CHROMOSOME_III	assembly_tag	Finished	10171236	10171239	.	+	.	Note "Left: T20G5"
CHROMOSOME_III	assembly_tag	Clone	10171236	10171239	.	+	.	Note "left end: T20G5"
CHROMOSOME_III	assembly_tag	annotation	10171236	10171239	.	+	.	Note "? left End of T20G5"
CHROMOSOME_III	assembly_tag	Finished	10219231	10219234	.	+	.	Note "Left: Y70G10A"
CHROMOSOME_III	assembly_tag	TeamLeader	10219292	10219292	.	+	.	Note "comment: crl 1998-08-12sjj picked up this difference betweenT20G5 and Y70G10A.  I believe Y70G10A to be correct and have edited this to one G.  The +ve primers have no sign of an expansion, and G peak is clearly 1 base.  The -ve primer is not of verygood quality.  There are lots of good quality terminators in Y70G10A to confirm 1 G.  Does not appear to be a variation, just an error."
CHROMOSOME_III	assembly_tag	Clone	10219327	10219330	.	+	.	Note "right end: T20G5"
CHROMOSOME_III	assembly_tag	Finished	10219327	10219330	.	+	.	Note "Right: T20G5"
CHROMOSOME_III	assembly_tag	Clone	10219327	10219330	.	-	.	Note "right end: T20G5"
CHROMOSOME_III	assembly_tag	annotation	10224458	10225888	.	+	.	Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Region of 45 bp tandem repeat, typicalsequence: CAAAATGTTTTAAACTGAGAATTATGGAAAAAAATGGTAAATTTAAATGTGCACTGGTTTTSome base pair differences have been edited.  Restriction digest data (PSTI,XHOI) suggest 3kb is missing from the assembly of a region which includes boththis repeat region and a region comprised of a 161 bp tandem repeat."
CHROMOSOME_III	assembly_tag	annotation	10226032	10227710	.	+	.	Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Region of 161 bp tandem repeat, typicalsequence: CATTCTTTTTTATTGCATAAAACTGTTCAGCATAGTCAAAAATACCAGAATATGCCAATCAAAGTATAATAGCTTGTACGGAAGTTTTTTTTTAAAAATTGATAAAAAATATATAAAAGCTGATTTTTTCAAAAATTCAAAAGTATGGGAAAATCATATGGAGTSome base pair differences have been edited.  Restriction digest data (PSTI,XHOI) suggest 3kb is missing from the assembly of a region which includes boththis repeat region and a region comprised of a 45 bp tandem repeat."
CHROMOSOME_III	assembly_tag	annotation	10242476	10242588	.	+	.	Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region consisting solely of short insert reads derived from a single pUC clone.Assembly has been confirmed by restriction digest (PSTI, XHOI)."
CHROMOSOME_III	assembly_tag	Finished	10245384	10245387	.	+	.	Note "Left: R01H10"
CHROMOSOME_III	assembly_tag	Clone	10245384	10245389	.	+	.	Note "left end: R01H10"
CHROMOSOME_III	assembly_tag	Clone	10245384	10245389	.	-	.	Note "left end: R01H10"
CHROMOSOME_III	assembly_tag	Finished	10245480	10245483	.	+	.	Note "Right: Y70G10A"
CHROMOSOME_III	assembly_tag	Finished	10276635	10276638	.	+	.	Note "Right: R01H10"
CHROMOSOME_III	assembly_tag	Clone	10295801	10295804	.	+	.	Note "left end: T07A5"
CHROMOSOME_III	assembly_tag	annotation	10297666	10297666	.	+	.	Note "?check this by re sequencing o05c7.s1 point mutation C > G on single read"
CHROMOSOME_III	assembly_tag	Clone	10302297	10302301	.	+	.	Note "right end: K10G9 right end "
CHROMOSOME_III	assembly_tag	Clone	10302303	10302306	.	+	.	Note "right end: K10G9"
CHROMOSOME_III	assembly_tag	annotation	10309172	10309172	.	+	.	Note "point mutation C > T on single read"
CHROMOSOME_III	assembly_tag	annotation	10320143	10320221	.	+	.	Note "?This region has proved almost impossible to sequence through. For this reason the sequence at this point in particular and across this whole inverted repeat region are not to be regarded as 100% accurate"
CHROMOSOME_III	assembly_tag	annotation	10320151	10320155	.	+	.	Note "This region has proved almost impossible to sequence through. For this reason the sequence at this point in particular and across this whole inverted repeat region are not to be regarded as 100% accurate"
CHROMOSOME_III	assembly_tag	Clone	10323972	10323975	.	+	.	Note "left end: T07C4 START"
CHROMOSOME_III	assembly_tag	Finished	10323972	10323975	.	+	.	Note "Left: T07C4"
CHROMOSOME_III	assembly_tag	Clone	10323972	10323975	.	+	.	Note "left end: Start of overlap with T07C4"
CHROMOSOME_III	assembly_tag	Clone	10332812	10332815	.	+	.	Note "right end: END of T07A5"
CHROMOSOME_III	assembly_tag	annotation	10357345	10357347	.	+	.	Note "Start of C38H2 "
CHROMOSOME_III	assembly_tag	Clone	10357345	10357348	.	+	.	Note "left end: START of C38H2"
CHROMOSOME_III	assembly_tag	Finished	10357345	10357347	.	-	.	Note "Left: C38H2"
CHROMOSOME_III	assembly_tag	Finished	10357445	10357448	.	+	.	Note "Right: T07C4"
CHROMOSOME_III	assembly_tag	annotation	10368718	10368719	.	+	.	Note "Submit as CC (majority of reads in     pjb8).  Note when in cosmid vector     Lorist 4 it is CG.  "
CHROMOSOME_III	assembly_tag	annotation	10368718	10368719	.	-	.	Note "Submit as CC (majority of reads in     pjb8).  Note when in cosmid vector     Lorist 4 it is CG.  "
CHROMOSOME_III	assembly_tag	annotation	10389194	10389196	.	+	.	Note "Beginning of overlap with M03C11"
CHROMOSOME_III	assembly_tag	annotation	10389194	10389199	.	+	.	Note "left hand end"
CHROMOSOME_III	assembly_tag	Finished	10389291	10389294	.	-	.	Note "Right: C38H2"
CHROMOSOME_III	assembly_tag	annotation	10394870	10394876	.	+	.	Note "end of C38H2"
CHROMOSOME_III	assembly_tag	annotation	10398513	10398543	.	+	.	Note "weak data in repeat region but probably correct"
CHROMOSOME_III	assembly_tag	Finished	10429870	10429873	.	+	.	Note "Left: H04D03"
CHROMOSOME_III	assembly_tag	annotation	10429967	10429973	.	+	.	Note "right hand end"
CHROMOSOME_III	assembly_tag	Clone	10429970	10429973	.	+	.	Note "right end: M03C11"
CHROMOSOME_III	assembly_tag	Clone	10450849	10450852	.	-	.	Note "left end: D2045"
CHROMOSOME_III	assembly_tag	Clone	10450849	10450852	.	-	.	Note "left end: D2045"
CHROMOSOME_III	assembly_tag	Finished	10450849	10450852	.	-	.	Note "Left: D2045"
CHROMOSOME_III	assembly_tag	Finished	10450949	10450952	.	+	.	Note "Right: H04D03"
CHROMOSOME_III	assembly_tag	Finished	10487994	10487997	.	+	.	Note "Left: F43D9"
CHROMOSOME_III	assembly_tag	Clone	10487994	10487997	.	-	.	Note "left end: F43D9"
CHROMOSOME_III	assembly_tag	Finished	10488094	10488097	.	+	.	Note "Right: D2045"
CHROMOSOME_III	assembly_tag	annotation	10520506	10520509	.	+	.	Note "LH end T21C12"
CHROMOSOME_III	assembly_tag	Clone	10520506	10520509	.	+	.	Note "left end: Beginning of T21C12"
CHROMOSOME_III	assembly_tag	Finished	10520691	10520694	.	-	.	Note "Right: F43D9"
CHROMOSOME_III	assembly_tag	annotation	10521016	10521028	.	+	.
CHROMOSOME_III	assembly_tag	Clone	10525793	10525796	.	+	.	Note "right end: End of F43D9"
CHROMOSOME_III	assembly_tag	annotation	10525793	10525797	.	+	.	Note "Rh end of F43D9 Lorist 6"
CHROMOSOME_III	assembly_tag	annotation	10531168	10531178	.	+	.
CHROMOSOME_III	assembly_tag	annotation	10532820	10532840	.	+	.
CHROMOSOME_III	assembly_tag	annotation	10544047	10544197	.	+	.	Note "No + d.s. across bases 23541 to 23692 (approx 150 bp). Sequence confirmed by terminators on opposite strand."
CHROMOSOME_III	assembly_tag	annotation	10549053	10549150	.	+	.	Note "No + d.s. across bases 28546 to 28645 (100bp). Sequence confirmed by terminators on opposite strand."
CHROMOSOME_III	assembly_tag	Finished	10559160	10559165	.	+	.	Note "Left: Y45F3A"
CHROMOSOME_III	assembly_tag	Clone	10559260	10559265	.	+	.	Note "right end: T21C12"
CHROMOSOME_III	assembly_tag	annotation	10559287	10559292	.	+	.	Note "RH end of T21C12  Lorist 2"
CHROMOSOME_III	assembly_tag	Clone	10559289	10559292	.	+	.	Note "right end: End of T21C12"
CHROMOSOME_III	assembly_tag	oligo	10563743	10563759	.	+	.	Note "serial#=Y45F3.9        \nsequence=GTAAATCGACATCAGCG\nflags=\n"
CHROMOSOME_III	assembly_tag	oligo	10566075	10566093	.	-	.	Note "serial#=Y45F3.5        \ntemplate=sr58a3\nsequence=GGAGTAATCTGTATAATGG\nflags=\n"
CHROMOSOME_III	assembly_tag	annotation	10566891	10567280	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSonicated pUC clones from sr66e5"
CHROMOSOME_III	assembly_tag	annotation	10567364	10567684	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSonicated pUC clones from sr66e5"
CHROMOSOME_III	assembly_tag	annotation	10567847	10567930	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSonicated pUC clones from sr59f1"
CHROMOSOME_III	assembly_tag	oligo	10568207	10568224	.	-	.	Note "serial#=Y45F3.6        \ntemplate=\nsequence=ATCTCTTAGCGAAAACTG\nflags=\n"
CHROMOSOME_III	assembly_tag	annotation	10568229	10568319	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSonicated pUC clones from sr59f1"
CHROMOSOME_III	assembly_tag	oligo	10568605	10568621	.	-	.	Note "serial#=Y45F3.3        \ntemplate=sr59f1.p1U      \nsequence=TTCCGTAGAGGTTTAGG\nflags=\n"
CHROMOSOME_III	assembly_tag	Clone	10595708	10595713	.	+	.	Note "left end: Y39A1"
CHROMOSOME_III	assembly_tag	Finished	10595708	10595713	.	+	.	Note "Left: Y39A1A"
CHROMOSOME_III	assembly_tag	Clone	10595708	10595713	.	-	.	Note "left end: Y39A1\n\n"
CHROMOSOME_III	assembly_tag	Finished	10595808	10595813	.	+	.	Note "Right: Y45F3A"
CHROMOSOME_III	assembly_tag	annotation	10603684	10603687	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n"
CHROMOSOME_III	assembly_tag	annotation	10654299	10654326	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n"
CHROMOSOME_III	assembly_tag	Clone	10706562	10706567	.	+	.	Note "left end: W09D10"
CHROMOSOME_III	assembly_tag	Clone	10706561	10706568	.	-	.	Note "left end: W09D10"
CHROMOSOME_III	assembly_tag	Finished	10706561	10706568	.	-	.	Note "Left: W09D10"
CHROMOSOME_III	assembly_tag	Finished	10706662	10706667	.	+	.	Note "Right: Y39A1A"
CHROMOSOME_III	assembly_tag	Clone	10721866	10721869	.	-	.	Note "left end: K01G5"
CHROMOSOME_III	assembly_tag	annotation	10732486	10732501	.	-	.	Note "number of Cs may not be accurate.\nsome M13 subclones have deleted."
CHROMOSOME_III	assembly_tag	Finished	10740378	10740381	.	+	.	Note "Left: K01G5"
CHROMOSOME_III	assembly_tag	Finished	10740478	10740481	.	+	.	Note "Right: W09D10"
CHROMOSOME_III	assembly_tag	Clone	10740478	10740481	.	+	.	Note "right end: W09D10"
CHROMOSOME_III	assembly_tag	Clone	10740478	10740481	.	-	.	Note "left end: W09D10"
CHROMOSOME_III	assembly_tag	Finished	10759716	10759719	.	+	.	Note "Left: Y39A1B"
CHROMOSOME_III	assembly_tag	Clone	10759816	10759819	.	+	.	Note "right end: K01G5"
CHROMOSOME_III	assembly_tag	Clone	10759816	10759819	.	-	.	Note "right end: K01G5"
CHROMOSOME_III	assembly_tag	Finished	10759816	10759819	.	-	.	Note "Right: K01G5"
CHROMOSOME_III	assembly_tag	Clone	10798135	10798138	.	+	.	Note "left end: K11D9"
CHROMOSOME_III	assembly_tag	Finished	10798135	10798138	.	-	.	Note "Left: K11D9"
CHROMOSOME_III	assembly_tag	Clone	10798135	10798138	.	-	.	Note "left end: K11D9"
CHROMOSOME_III	assembly_tag	Finished	10798235	10798238	.	+	.	Note "Right: Y39A1B"
CHROMOSOME_III	assembly_tag	annotation	10806867	10806884	.	+	.	Note "no. of Gs may not be accurate."
CHROMOSOME_III	assembly_tag	Clone	10807253	10807258	.	-	.	Note "right end: R17"
CHROMOSOME_III	assembly_tag	annotation	10829489	10829521	.	-	.	Note "Single pUC clone covering this region."
CHROMOSOME_III	assembly_tag	Finished	10830236	10830239	.	-	.	Note "Left: R17"
CHROMOSOME_III	assembly_tag	Clone	10830336	10830339	.	-	.	Note "right end: K11D9 left end"
CHROMOSOME_III	assembly_tag	Clone	10830336	10830339	.	-	.	Note "right end: K11D9"
CHROMOSOME_III	assembly_tag	Finished	10830336	10830339	.	-	.	Note "Right: K11D9"
CHROMOSOME_III	assembly_tag	Finished	10850149	10850154	.	+	.	Note "Left: Y39A1C"
CHROMOSOME_III	assembly_tag	Clone	10850249	10850254	.	+	.	Note "right end: R17"
CHROMOSOME_III	assembly_tag	Finished	10850249	10850254	.	-	.	Note "Right: R17"
CHROMOSOME_III	assembly_tag	Clone	10850249	10850254	.	-	.	Note "right end: R17"
CHROMOSOME_III	assembly_tag	Finished	10868191	10868194	.	+	.	Note "Left: C44B9"
CHROMOSOME_III	assembly_tag	Clone	10868191	10868194	.	+	.	Note "left end: C44B9"
CHROMOSOME_III	assembly_tag	Clone	10868191	10868194	.	-	.	Note "left end: C44B9"
CHROMOSOME_III	assembly_tag	Finished	10868291	10868294	.	+	.	Note "Right: Y39A1C"
CHROMOSOME_III	assembly_tag	comment	10875926	10875926	.	+	.	Note "deleted base"
CHROMOSOME_III	assembly_tag	comment	10890891	10890891	.	+	.	Note "restored G 31-12-01  jes"
CHROMOSOME_III	assembly_tag	Clone	10902788	10902791	.	+	.	Note "left end: M142"
CHROMOSOME_III	assembly_tag	Finished	10902788	10902791	.	+	.	Note "Left: M142"
CHROMOSOME_III	assembly_tag	Clone	10902788	10902791	.	-	.	Note "left end: M142"
CHROMOSOME_III	assembly_tag	Finished	10902888	10902891	.	+	.	Note "Right: C44B9"
CHROMOSOME_III	assembly_tag	Clone	10907843	10907846	.	+	.	Note "right end: C44B9"
CHROMOSOME_III	assembly_tag	annotation	10927008	10927010	.	+	.	Note "G missing"
CHROMOSOME_III	assembly_tag	annotation	10927008	10927010	.	+	.	Note "G missing in a single M13 clone"
CHROMOSOME_III	assembly_tag	Finished	10938990	10938993	.	+	.	Note "Left: Y52D3"
CHROMOSOME_III	assembly_tag	Clone	10939090	10939093	.	+	.	Note "right end: M142"
CHROMOSOME_III	assembly_tag	Finished	10939090	10939093	.	+	.	Note "Right: M142"
CHROMOSOME_III	assembly_tag	Clone	10939090	10939093	.	+	.	Note "right end: End of M142"
CHROMOSOME_III	assembly_tag	Clone	10939093	10939093	.	+	.	Note "left end: "
CHROMOSOME_III	assembly_tag	Finished	10947344	10947349	.	+	.	Note "Left: Y48A6A"
CHROMOSOME_III	assembly_tag	Clone	10947344	10947349	.	+	.	Note "left end: Y48A6A"
CHROMOSOME_III	assembly_tag	Clone	10947344	10947349	.	+	.	Note "left end: "
CHROMOSOME_III	assembly_tag	Finished	10947444	10947449	.	+	.	Note "Right: "
CHROMOSOME_III	assembly_tag	Clone	10954544	10954547	.	+	.	Note "right end: Y48A6A"
CHROMOSOME_III	assembly_tag	Clone	10954544	10954547	.	+	.	Note "left end: W05B2"
CHROMOSOME_III	assembly_tag	Clone	10954544	10954547	.	-	.	Note "left end: W05B2"
CHROMOSOME_III	assembly_tag	Finished	10954544	10954547	.	-	.	Note "Left: W05B2"
CHROMOSOME_III	assembly_tag	Finished	10954640	10954643	.	+	.	Note "Right: Y48A6A"
CHROMOSOME_III	assembly_tag	Finished	10989973	10989976	.	+	.	Note "Left: Y48A6B"
CHROMOSOME_III	assembly_tag	Finished	10990068	10990073	.	-	.	Note "Right: W05B2"
CHROMOSOME_III	assembly_tag	Clone	10990068	10990073	.	-	.	Note "right end: W05B2"
CHROMOSOME_III	assembly_tag	annotation	11004501	11004512	.	+	.	Note "tandem repeat between 57320 - 59030 so\ncovering 1.7kb .    \n70 copies of CAATCTATTTTTTGGTATG\n80 copies of TTTTTTGGTATG\n76 copies of CAATCTATTTTTT\nassembled correct as possible according\nto read pairs, not yet confirmed by\ndigest."
CHROMOSOME_III	assembly_tag	annotation	11052019	11052024	.	+	.	Note "clone so42c6 has been sized and is as\npredicted so inverted repeat asembled\ncorrectly."
CHROMOSOME_III	assembly_tag	Clone	11064945	11064948	.	+	.	Note "left end: W09D6"
CHROMOSOME_III	assembly_tag	Clone	11064945	11064948	.	+	.	Note "left end: W09D6"
CHROMOSOME_III	assembly_tag	Finished	11064945	11064948	.	-	.	Note "Left: W09D6"
CHROMOSOME_III	assembly_tag	Finished	11065042	11065045	.	+	.	Note "Right: Y48A6B"
CHROMOSOME_III	assembly_tag	Finished	11100344	11100347	.	+	.	Note "Left: Y48A6C"
CHROMOSOME_III	assembly_tag	Finished	11100444	11100447	.	+	.	Note "Right: W09D6"
CHROMOSOME_III	assembly_tag	Clone	11100444	11100447	.	+	.	Note "right end: W09D6"
CHROMOSOME_III	assembly_tag	Clone	11100444	11100447	.	+	.	Note "right end: W09D6"
CHROMOSOME_III	assembly_tag	Clone	11135979	11135984	.	+	.	Note "left end: Y47D3"
CHROMOSOME_III	assembly_tag	Clone	11135979	11135984	.	+	.	Note "left end: Y47D3"
CHROMOSOME_III	assembly_tag	Finished	11135979	11135984	.	+	.	Note "Left: Y47D3A"
CHROMOSOME_III	assembly_tag	Finished	11136079	11136082	.	+	.	Note "Right: Y48A6C"
CHROMOSOME_III	assembly_tag	annotation	11150140	11150147	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nPrimer read only.  Loop of inverted\nrepeat."
CHROMOSOME_III	assembly_tag	annotation	11150148	11150208	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nPrimer reads only."
CHROMOSOME_III	assembly_tag	Clone	11197697	11197700	.	+	.	Note "left end: C41D8"
CHROMOSOME_III	assembly_tag	Clone	11217204	11217209	.	-	.	Note "right end: Y48A6"
CHROMOSOME_III	assembly_tag	annotation	11330104	11330121	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nPrimer read\n"
CHROMOSOME_III	assembly_tag	Finished	11335692	11335695	.	-	.	Note "Left: T28D6"
CHROMOSOME_III	assembly_tag	Clone	11335692	11335695	.	-	.	Note "left end: T28D6"
CHROMOSOME_III	assembly_tag	Finished	11335789	11335792	.	+	.	Note "Right: Y47D3A"
CHROMOSOME_III	assembly_tag	Finished	11375663	11375666	.	+	.	Note "Left: Y47D3B"
CHROMOSOME_III	assembly_tag	Finished	11375763	11375766	.	-	.	Note "Right: T28D6"
CHROMOSOME_III	assembly_tag	Clone	11375763	11375766	.	-	.	Note "right end: T28D6 "
CHROMOSOME_III	assembly_tag	annotation	11428909	11435746	.	+	.	Note "[x] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n159 copies of a 43bp repeat.\nContains 3 forced joins and some single\nclone regions."
CHROMOSOME_III	assembly_tag	Clone	11437518	11437521	.	+	.	Note "left end: H10N23"
CHROMOSOME_III	assembly_tag	Finished	11471525	11471528	.	-	.	Note "Left: Y66A7AL"
CHROMOSOME_III	assembly_tag	Clone	11471625	11471630	.	+	.	Note "right end: Y47D3"
CHROMOSOME_III	assembly_tag	Clone	11471625	11471630	.	+	.	Note "right end: Y47D3"
CHROMOSOME_III	assembly_tag	Finished	11471627	11471630	.	+	.	Note "Right: Y47D3B"
CHROMOSOME_III	assembly_tag	annotation	11474717	11474736	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Uncertain number of Cs."
CHROMOSOME_III	assembly_tag	Finished	11487262	11487267	.	+	.	Note "Left: Y66D12A"
CHROMOSOME_III	assembly_tag	Clone	11487362	11487368	.	+	.	Note "right end: Y66A7AL"
CHROMOSOME_III	assembly_tag	Finished	11487362	11487368	.	+	.	Note "Right: Y66A7AL"
CHROMOSOME_III	assembly_tag	Clone	11487362	11487369	.	+	.	Note "right end: Y66A7AL"
CHROMOSOME_III	assembly_tag	Finished	11487363	11487368	.	+	.	Note "Left: Y66A7AR"
CHROMOSOME_III	assembly_tag	Clone	11487363	11487368	.	-	.	Note "left end: Y66A7AR"
CHROMOSOME_III	assembly_tag	annotation	11497015	11497029	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - this inverted repeat may not be truncated - evidence is conflicting"
CHROMOSOME_III	assembly_tag	annotation	11498364	11498371	.	-	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - in inverted repeat"
CHROMOSOME_III	assembly_tag	annotation	11503645	11503645	.	+	.	Note "C->G based on Thierry-Mieg EST analysis "
CHROMOSOME_III	assembly_tag	annotation	11529220	11529412	.	-	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - subclone instability in tandem repeat"
CHROMOSOME_III	assembly_tag	annotation	11553162	11553283	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - in tandem repeat"
CHROMOSOME_III	assembly_tag	annotation	11562862	11562931	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - in tandem repeat"
CHROMOSOME_III	assembly_tag	annotation	11570555	11570588	.	-	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [x] Forced join [ ] Other Add a comment here - possibly tandem IR2s"
CHROMOSOME_III	assembly_tag	annotation	11585483	11585488	.	-	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - in IR2"
CHROMOSOME_III	assembly_tag	annotation	11595210	11595408	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - in tandem repeat"
CHROMOSOME_III	assembly_tag	Clone	11601037	11601040	.	+	.	Note "left end: C37G2"
CHROMOSOME_III	assembly_tag	Finished	11610305	11610310	.	+	.	Note "Right: Y66A7AL"
CHROMOSOME_III	assembly_tag	Clone	11610305	11610310	.	+	.	Note "right end: Y66A7AL"
CHROMOSOME_III	assembly_tag	Clone	11610305	11610312	.	+	.	Note "left end: Y66A7AR"
CHROMOSOME_III	assembly_tag	Finished	11610305	11610312	.	+	.	Note "Left: Y66A7AR"
CHROMOSOME_III	assembly_tag	Clone	11610305	11610312	.	-	.	Note "left end: Y66A7AR"
CHROMOSOME_III	assembly_tag	Finished	11610405	11610410	.	-	.	Note "Right: Y66D12A"
CHROMOSOME_III	assembly_tag	Clone	11620964	11620969	.	-	.	Note "right end: Y66D12A"
CHROMOSOME_III	assembly_tag	Clone	11637775	11637780	.	+	.	Note "left end: Y41C4"
CHROMOSOME_III	assembly_tag	Finished	11637862	11637865	.	-	.	Note "Right: Y66A7AR"
CHROMOSOME_III	assembly_tag	Clone	11766732	11766735	.	+	.	Note "left end: C24H11"
CHROMOSOME_III	assembly_tag	annotation	11766732	11766735	.	+	.	Note "[ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other CommentRestriction digest data (AVAI, AVAII, BAMHI, ECORI, KPNI) suggest the assembly is too large, but no way has been foundof assembling the cosmid so that it matches the digest."
CHROMOSOME_III	assembly_tag	Finished	11766732	11766735	.	+	.	Note "Left: C24H11"
CHROMOSOME_III	assembly_tag	annotation	11773618	11774367	.	+	.	Note "[x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other CommentRegion of 79bp tandem repeat.  Restriction digest data do not agree with the assembly of the cosmid (the assembly is larger than indicated by the digest).  Data from the restriction enzymes used  (ALUI, AVAI, AVAII, BAMHI,ECORI, KPNI) conflict as to how much is missing from the assembly of this tandemrepeat. "
CHROMOSOME_III	assembly_tag	annotation	11791821	11791824	.	+	.	Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[x] Other \nComment\nOne clone has TA, 15 clones have TAGA."
CHROMOSOME_III	assembly_tag	annotation	11794635	11794635	.	+	.	Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[x] Other \nComment\nOne clone has C, 12 clones have A."
CHROMOSOME_III	assembly_tag	Finished	11804482	11804485	.	+	.	Note "Left: C18D11"
CHROMOSOME_III	assembly_tag	Clone	11804582	11804585	.	+	.	Note "right end: C24H11"
CHROMOSOME_III	assembly_tag	Clone	11804582	11804585	.	+	.	Note "right end: C24H11"
CHROMOSOME_III	assembly_tag	Finished	11804582	11804585	.	+	.	Note "Right: C24H11"
CHROMOSOME_III	assembly_tag	annotation	11832879	11832895	.	+	.	Note "this region is covered by a single clone which is a read generated from a sonication of clone sx66a5. This region is consistent with the digest"
CHROMOSOME_III	assembly_tag	annotation	11833088	11833100	.	-	.	Note "Region contains repeat elements. The cosmid if consistent with the digest"
CHROMOSOME_III	assembly_tag	Finished	11833627	11833630	.	+	.	Note "Left: Y56A3A"
CHROMOSOME_III	assembly_tag	Clone	11833727	11833730	.	+	.	Note "right end: C18D11\n"
CHROMOSOME_III	assembly_tag	Finished	11833727	11833730	.	+	.	Note "Right: C18D11"
CHROMOSOME_III	assembly_tag	Clone	11833727	11833730	.	+	.	Note "right end: C18D11"
CHROMOSOME_III	assembly_tag	annotation	11857658	11857694	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n"
CHROMOSOME_III	assembly_tag	annotation	11861669	11861669	.	+	.	Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here - base pair differencebetween Y56A3 & Y41C4 . Y56A3 reads aAtwhereas Y41C4 reads aTt"
CHROMOSOME_III	assembly_tag	Clone	11895837	11895842	.	+	.	Note "right end: Y41C4"
CHROMOSOME_III	assembly_tag	annotation	11931839	11931892	.	+	.	Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here - False join in small tandem repeat TAGGTATTATAGGTAT. At least 18 copies in a region of about 700 bp"
CHROMOSOME_III	assembly_tag	annotation	11993634	11993663	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nArm of inverted repeat."
CHROMOSOME_III	assembly_tag	Finished	12002891	12002894	.	+	.	Note "Left: Y79H2A"
CHROMOSOME_III	assembly_tag	Clone	12002891	12002895	.	+	.	Note "left end: Y79H2"
CHROMOSOME_III	assembly_tag	Clone	12002891	12002895	.	+	.	Note "left end: Y79H2"
CHROMOSOME_III	assembly_tag	Finished	12002986	12002990	.	+	.	Note "Right: Y56A3A"
CHROMOSOME_III	assembly_tag	Clone	12025661	12025666	.	+	.	Note "right end: Y56A3"
CHROMOSOME_III	assembly_tag	annotation	12052754	12052858	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nShort insert library made from pUC clone\nsz21h3."
CHROMOSOME_III	assembly_tag	annotation	12068699	12068842	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nReads derived from 2 PCR products both\nmade using oligos 35 and 18"
CHROMOSOME_III	assembly_tag	Clone	12068932	12068937	.	+	.	Note "left end: Y75B8"
CHROMOSOME_III	assembly_tag	Clone	12068932	12068937	.	+	.	Note "left end: Y75B8"
CHROMOSOME_III	assembly_tag	Finished	12068932	12068937	.	+	.	Note "Left: Y75B8A"
CHROMOSOME_III	assembly_tag	Finished	12069031	12069034	.	+	.	Note "Right: Y79H2A"
CHROMOSOME_III	assembly_tag	annotation	12102648	12102771	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by a single clone sw82g1 as well as sonicated reads from this subclone"
CHROMOSOME_III	assembly_tag	annotation	12103191	12103193	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -This area is covered only by two subclones. The subclone from the Y75B8 library reads gtg whereas the suclone from Y79H2 reads gttgg. The sequence has been edited to the sequence given by the Y75B8 clone."
CHROMOSOME_III	assembly_tag	annotation	12118515	12118532	.	+	.	Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -number of g's in this run is uncertain it has been edited to the maximum ie 18"
CHROMOSOME_III	assembly_tag	annotation	12131704	12131854	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion covered only by sonicated reads of subclone sx15g5"
CHROMOSOME_III	assembly_tag	annotation	12161581	12161593	.	+	.	Note "First select a Feature -[X] Unsure[ ] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -This region of 13bp is covered only by single direction dye primers. There are two subclones covering this point. The region falls in the arm of an inverted repeat."
CHROMOSOME_III	assembly_tag	annotation	12172302	12173193	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat region containing false join and also single clone regions. Repeat element is 11bp long. There is variation between some of the copies."
CHROMOSOME_III	assembly_tag	annotation	12190660	12190691	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Clone Y75B8 has deleted these copies of the tandem repeat. It has been edited to the maximum number as shown by the overlapping clones H26P12 and Y79H2."
CHROMOSOME_III	assembly_tag	annotation	12239770	12239772	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -The sequence for the overlapping cloneY79H2 reads cAg and not cGg. This looksto be a base variation between thesetwo clones."
CHROMOSOME_III	assembly_tag	annotation	12246539	12246818	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only by the subclone qb19b1. Region is only covered with terminator chemistry. This is contained in the arm of an inverted repeat."
CHROMOSOME_III	assembly_tag	annotation	12247134	12247598	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only by the subclone qb19a5.Subclone has been sequenced with terminator and primer chemistries."
CHROMOSOME_III	assembly_tag	Clone	12253439	12253442	.	+	.	Note "right end: Y79H2"
CHROMOSOME_III	assembly_tag	annotation	12254217	12255320	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Region contains dispersed IR-2 inverted repeat similar to sequence U86947. The repeat is flanked by a tandem duplication of the sequence CAATT. This region contains some areas of single clone. The first arm of the inverted repeat has approximately 135bp missing which has been represented with the sequence from the second arm."
CHROMOSOME_III	assembly_tag	annotation	12262288	12262466	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion covered only by reads from a sonication of subclone sx14b2."
CHROMOSOME_III	assembly_tag	annotation	12267417	12268208	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence ATAG. The region contains a single clone."
CHROMOSOME_III	assembly_tag	annotation	12278845	12279899	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -The tandem repeat unit is 31bp. The area also contains a single clone region."
CHROMOSOME_III	assembly_tag	annotation	12280762	12280800	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion only contains sonicated reads from subclone sx09f1."
CHROMOSOME_III	assembly_tag	annotation	12288114	12288140	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Region is covered by two subclones one of which has deleted out one copy of a tandem repeat at this point."
CHROMOSOME_III	assembly_tag	annotation	12298387	12298424	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only by a single direction primer read. This region is in an arm of an inverted repeat."
CHROMOSOME_III	assembly_tag	annotation	12298512	12298543	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region is covered only with a single clone, which lies in the arm of an inverted repeat. "
CHROMOSOME_III	assembly_tag	annotation	12342299	12342432	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion covered only by sonicated reads from subclone sx12c2."
CHROMOSOME_III	assembly_tag	annotation	12345763	12348069	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -This tandem repeat region contains a forced join and also single clone regions. The repeat elements are approximately 37bp long, and show variation between the copies."
CHROMOSOME_III	assembly_tag	annotation	12353200	12353236	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region is covered only by a single clone. The subclone has been sequenced with both chemistries."
CHROMOSOME_III	assembly_tag	Clone	12367231	12367236	.	+	.	Note "left end: Y49E10"
CHROMOSOME_III	assembly_tag	Finished	12367231	12367236	.	+	.	Note "Left: Y49E10"
CHROMOSOME_III	assembly_tag	Clone	12367231	12367236	.	+	.	Note "left end: Y49E10"
CHROMOSOME_III	assembly_tag	Finished	12367332	12367337	.	+	.	Note "Right: Y75B8A"
CHROMOSOME_III	assembly_tag	annotation	12376365	12376376	.	-	.	Note "[ ] Tandem repeat \n[X] Single clone region \n[ ] Forced join \n[ ] Other \nComment\nRegion is covered only by a single clone.\nRegion consistent with the digest."
CHROMOSOME_III	assembly_tag	Clone	12401810	12401815	.	+	.	Note "right end: Y75B8"
CHROMOSOME_III	assembly_tag	Clone	12403461	12403466	.	+	.	Note "left end: Y111B2"
CHROMOSOME_III	assembly_tag	annotation	12408222	12408229	.	+	.	Note "[ ] Tandem repeat \n[X] Single clone region \n[ ] Forced join \n[ ] Other \nComment\nRegion covered by sonicated library of clone sr36a5."
CHROMOSOME_III	assembly_tag	annotation	12415985	12416050	.	+	.	Note "[ ] Tandem repeat \n[X] Single clone region \n[ ] Forced join \n[ ] Other \nComment\nRegion is covered only by one clone but is consistent with the digest."
CHROMOSOME_III	assembly_tag	annotation	12423436	12423468	.	+	.	Note "[ ] Tandem repeat \n[X] Single clone region \n[ ] Forced join \n[ ] Other \nComment\nSingle clone region containing reads from a sonication of clone sp26f9."
CHROMOSOME_III	assembly_tag	Finished	12492716	12492721	.	+	.	Note "Left: Y111B2A"
CHROMOSOME_III	assembly_tag	Finished	12492815	12492820	.	+	.	Note "Right: Y49E10"
CHROMOSOME_III	assembly_tag	Clone	12492815	12492820	.	+	.	Note "right end: Y49E10"
CHROMOSOME_III	assembly_tag	annotation	12493758	12493802	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - SIL of sp27c12 "
CHROMOSOME_III	assembly_tag	annotation	12507119	12507206	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primers only here "
CHROMOSOME_III	assembly_tag	annotation	12563165	12563200	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here -  single direction primers in inverted repeat "
CHROMOSOME_III	assembly_tag	annotation	12602970	12603260	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - this region contains reads from SIL of sp15g11 "
CHROMOSOME_III	assembly_tag	annotation	12603442	12603567	.	+	.	Note "First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join made using repK data "
CHROMOSOME_III	assembly_tag	annotation	12603443	12603568	.	+	.	Note "First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join made using repK data "
CHROMOSOME_III	assembly_tag	annotation	12609986	12610148	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primer only over inverted repeat "
CHROMOSOME_III	assembly_tag	annotation	12609990	12609990	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primers only here, unable to sequence terminators. "
CHROMOSOME_III	assembly_tag	annotation	12610353	12610412	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - single direction primers only here "
CHROMOSOME_III	assembly_tag	annotation	12670978	12671022	.	+	.	Note "First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by inv. rpt "
CHROMOSOME_III	assembly_tag	annotation	12678744	12679994	.	+	.	Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Repeat contains 156bp single clone region. so95e8 SIL confirms join but does not cover the single clone region. Edited to the remainder of the repeat. "
CHROMOSOME_III	assembly_tag	annotation	12716121	12716158	.	+	.	Note "First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - area contained within IR-2 rpt, bridged by so82b5 and sp12c12 "
CHROMOSOME_III	assembly_tag	annotation	12716171	12716203	.	+	.	Note "First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - area contained within IR-2 rpt, bridged by so82b5 and sp12c12 "
CHROMOSOME_III	assembly_tag	annotation	12720758	12720776	.	-	.	Note "First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by repH sequence "
CHROMOSOME_III	assembly_tag	annotation	12733008	12733016	.	+	.	Note "First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by repJ "
CHROMOSOME_III	assembly_tag	Finished	12750313	12750318	.	+	.	Note "Left: ZC482"
CHROMOSOME_III	assembly_tag	Clone	12750313	12750318	.	+	.	Note "left end: ZC482"
CHROMOSOME_III	assembly_tag	Finished	12750413	12750418	.	+	.	Note "Right: Y111B2A"
CHROMOSOME_III	assembly_tag	Finished	12786507	12786510	.	+	.	Note "Left: BE10"
CHROMOSOME_III	assembly_tag	Clone	12786609	12786614	.	+	.	Note "right end: ZC482"
CHROMOSOME_III	assembly_tag	Clone	12786609	12786614	.	+	.	Note "right end: ZC482"
CHROMOSOME_III	assembly_tag	Finished	12786609	12786614	.	+	.	Note "Right: ZC482"
CHROMOSOME_III	assembly_tag	Finished	12816739	12816742	.	+	.	Note "Left: Y37D8A"
CHROMOSOME_III	assembly_tag	Clone	12816839	12816842	.	+	.	Note "right end: BE10"
CHROMOSOME_III	assembly_tag	Finished	12816839	12816842	.	+	.	Note "Right: BE10"
CHROMOSOME_III	assembly_tag	Clone	12816839	12816842	.	+	.	Note "right end: BE10"
CHROMOSOME_III	assembly_tag	annotation	12872939	12873712	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence GTACT."
CHROMOSOME_III	assembly_tag	annotation	12903031	12903821	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence ACATT."
CHROMOSOME_III	assembly_tag	annotation	12923081	12923909	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. This copy of the repeat does not have a flanking duplicated sequence.This copy also contains a region which is covered only by one subclone."
CHROMOSOME_III	assembly_tag	annotation	12932692	12933189	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. In this copy the arms are shorter by approximately bp also there is no flanking duplication of sequence. The sequence which gives rise to the shortened version of this repeat is derived from subclones from two yac clones."
CHROMOSOME_III	assembly_tag	annotation	12947860	12947862	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nThe overlapping clone Y111B2 reads GGG at this point."
CHROMOSOME_III	assembly_tag	Clone	12949375	12949380	.	+	.	Note "left end: Y39E4A"
CHROMOSOME_III	assembly_tag	Finished	12949375	12949380	.	+	.	Note "Left: Y39E4A"
CHROMOSOME_III	assembly_tag	Clone	12949375	12949380	.	-	.	Note "left end: Y39E4"
CHROMOSOME_III	assembly_tag	Finished	12949475	12949480	.	+	.	Note "Right: Y37D8A"
CHROMOSOME_III	assembly_tag	Clone	12975480	12975483	.	+	.	Note "right end: Y39E4A"
CHROMOSOME_III	assembly_tag	Finished	12975480	12975483	.	+	.	Note "Left: ZK1010"
CHROMOSOME_III	assembly_tag	Clone	12975480	12975483	.	+	.	Note "left end: Beginning of ZK1010"
CHROMOSOME_III	assembly_tag	Clone	12975480	12975483	.	+	.	Note "left end: ZK1010"
CHROMOSOME_III	assembly_tag	Finished	12975580	12975583	.	+	.	Note "Right: Y39E4A"
CHROMOSOME_III	assembly_tag	annotation	12999244	12999246	.	+	.	Note "all stolen reads say 9 A's, but all \nother reads say 8 A's so edited to\nthe maximum number."
CHROMOSOME_III	assembly_tag	annotation	12999309	12999311	.	+	.	Note "all stolen reads say 12 G's, but all\nother reads say 13 G's so edited to\nthe maximum."
CHROMOSOME_III	assembly_tag	Clone	13008890	13008893	.	+	.	Note "left end: F14F7"
CHROMOSOME_III	assembly_tag	Clone	13008890	13008893	.	+	.	Note "left end: Beginning of F14F7"
CHROMOSOME_III	assembly_tag	Finished	13008890	13008893	.	+	.	Note "Left: F14F7"
CHROMOSOME_III	assembly_tag	Finished	13008987	13008990	.	+	.	Note "Right: ZK1010"
CHROMOSOME_III	assembly_tag	Clone	13009342	13009345	.	+	.	Note "right end: ZK1010"
CHROMOSOME_III	assembly_tag	annotation	13010163	13010240	.	+	.
CHROMOSOME_III	assembly_tag	annotation	13010241	13010302	.	+	.
CHROMOSOME_III	assembly_tag	annotation	13012539	13012549	.	+	.	Note "reads 277,880 and 1061 (single clone) have 3 A's  and 8 T's. The rest have 4 A's and 7 T's.\n\nEdited to 4 A's and 7 T's."
CHROMOSOME_III	assembly_tag	annotation	13012589	13012591	.	+	.	Note "reads 277, 880 and 1061 (a single clone) have ATG but all other reads have AGG.\n\nEdited to AGG"
CHROMOSOME_III	assembly_tag	annotation	13031687	13032342	.	+	.	Note "tandem repeat of length 1.1kb. \nA typical repeat element is \nTACCGCCCGCTACCACCGC (a 19-mer)"
CHROMOSOME_III	assembly_tag	Clone	13034254	13034257	.	+	.	Note "left end: F54F12 clone left"
CHROMOSOME_III	assembly_tag	Finished	13034254	13034257	.	+	.	Note "Left: "
CHROMOSOME_III	assembly_tag	Clone	13034254	13034257	.	+	.	Note "left end: F54F12"
CHROMOSOME_III	assembly_tag	Finished	13034354	13034357	.	+	.	Note "Right: F14F7"
CHROMOSOME_III	assembly_tag	Clone	13045535	13045538	.	+	.	Note "right end: F14F7 clone right"
CHROMOSOME_III	assembly_tag	annotation	13065509	13065528	.	-	.
CHROMOSOME_III	assembly_tag	Finished	13066865	13066868	.	+	.	Note "Left: Y39E4B"
CHROMOSOME_III	assembly_tag	Finished	13066965	13066968	.	+	.	Note "Right: "
CHROMOSOME_III	assembly_tag	Clone	13066965	13066968	.	+	.	Note "right end: F54F12"
CHROMOSOME_III	assembly_tag	Clone	13066965	13066968	.	-	.	Note "right end: F54F12 clone right"
CHROMOSOME_III	assembly_tag	annotation	13074199	13086231	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a tandem repeat each copy is approximately 58bp and there is variation amongst the copies. Region also contains forced joins and single clones."
CHROMOSOME_III	assembly_tag	annotation	13114579	13114645	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only from subcloned reads taken from a pcr product produced from yac dna."
CHROMOSOME_III	assembly_tag	annotation	13114950	13116430	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone region covered by subclone qa58a3. This subclone has been sonicated."
CHROMOSOME_III	assembly_tag	annotation	13144988	13145057	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by subclone sl39b10. This clone has been sequenced using both chemistries. Lies in the arm of an inverted repeat."
CHROMOSOME_III	assembly_tag	annotation	13146677	13146687	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion covered only by sonications of subclone sl35a10."
CHROMOSOME_III	assembly_tag	annotation	13147267	13147267	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nSubclone from overlaping project Y37D8 reads AG."
CHROMOSOME_III	assembly_tag	annotation	13147286	13148076	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TAATC. Region also contains single clone section."
CHROMOSOME_III	assembly_tag	Clone	13165501	13165506	.	-	.	Note "right end: Y37D8"
CHROMOSOME_III	assembly_tag	annotation	13192863	13192927	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion covered only with sonicated reads from subclone sm20b2."
CHROMOSOME_III	assembly_tag	annotation	13193186	13193975	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TATAA."
CHROMOSOME_III	assembly_tag	annotation	13195200	13195203	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region containing sonicated reads from subclone sm19h10."
CHROMOSOME_III	assembly_tag	annotation	13197972	13198416	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion only contains sonicated reads from subclone sm27e7"
CHROMOSOME_III	assembly_tag	annotation	13199757	13199780	.	+	.	Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nRegion covered only by sonicated reads from subclone sm30c7."
CHROMOSOME_III	assembly_tag	annotation	13202423	13203023	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Some subclones show a deletion at this point. A digest on subclone sm23c6 showed two bands on the gel one of which was ~600bp smaller than the other. Region of sequence contains single direction primers. Subclone sm32e11 has totoally deleted this region which contains an inverted repeat."
CHROMOSOME_III	assembly_tag	annotation	13220761	13220774	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Yac sequence shows 14 c's but the reads from the underlying clone F09D11 all say 13. It has been edited to the consensus of the yac."
CHROMOSOME_III	assembly_tag	Finished	13222441	13222446	.	+	.	Note "Left: Y43F4A"
CHROMOSOME_III	assembly_tag	Clone	13222441	13222446	.	-	.	Note "left end: Y43F4A"
CHROMOSOME_III	assembly_tag	Clone	13222441	13222446	.	-	.	Note "left end: Y43F4"
CHROMOSOME_III	assembly_tag	Finished	13222553	13222557	.	+	.	Note "Right: Y39E4B"
CHROMOSOME_III	assembly_tag	Clone	13246265	13246268	.	+	.	Note "right end: Y43F4A"
CHROMOSOME_III	assembly_tag	Clone	13246265	13246268	.	-	.	Note "left end: F56A8"
CHROMOSOME_III	assembly_tag	Clone	13246265	13246268	.	-	.	Note "left end: F56A8"
CHROMOSOME_III	assembly_tag	Finished	13246265	13246268	.	-	.	Note "Left: F56A8"
CHROMOSOME_III	assembly_tag	Finished	13246365	13246368	.	+	.	Note "Right: Y43F4A"
CHROMOSOME_III	assembly_tag	annotation	13257621	13257627	.	-	.	Note "read 558 has AAATTTT but the rest have\nAAAATTT including a cosmid pcr"
CHROMOSOME_III	assembly_tag	annotation	13264073	13264133	.	-	.	Note "bases 21633 - 22471 are covered by a    single clone"
CHROMOSOME_III	assembly_tag	annotation	13264134	13264211	.	-	.	Note "single clone"
CHROMOSOME_III	assembly_tag	annotation	13264212	13264289	.	-	.	Note "single clone"
CHROMOSOME_III	assembly_tag	annotation	13264290	13264367	.	-	.	Note "single clone"
CHROMOSOME_III	assembly_tag	annotation	13264368	13264445	.	-	.	Note "single clone"
CHROMOSOME_III	assembly_tag	annotation	13264446	13264523	.	-	.	Note "single clone"
CHROMOSOME_III	assembly_tag	annotation	13264524	13264601	.	-	.
CHROMOSOME_III	assembly_tag	annotation	13264602	13264679	.	-	.
CHROMOSOME_III	assembly_tag	annotation	13264680	13264757	.	-	.
CHROMOSOME_III	assembly_tag	annotation	13264758	13264834	.	-	.
CHROMOSOME_III	assembly_tag	annotation	13264835	13264910	.	-	.	Note "bases 21633 - 22471 are covered by a    single clone"
CHROMOSOME_III	assembly_tag	annotation	13281363	13281365	.	-	.
CHROMOSOME_III	assembly_tag	annotation	13281416	13281417	.	-	.
CHROMOSOME_III	assembly_tag	annotation	13281419	13281420	.	-	.
CHROMOSOME_III	assembly_tag	annotation	13282162	13282220	.	-	.	Note "bases 4324 - 4382 in the inverted      repeat are covered by a single clone"
CHROMOSOME_III	assembly_tag	Finished	13286440	13286443	.	+	.	Note "Left: Y43F4B"
CHROMOSOME_III	assembly_tag	Clone	13286540	13286543	.	+	.	Note "left end: Y43F4B"
CHROMOSOME_III	assembly_tag	Clone	13286540	13286543	.	+	.	Note "right end: F56A8"
CHROMOSOME_III	assembly_tag	Clone	13286540	13286543	.	-	.	Note "right end: F56A8"
CHROMOSOME_III	assembly_tag	Finished	13286540	13286543	.	-	.	Note "Right: F56A8"
CHROMOSOME_III	assembly_tag	annotation	13289817	13289928	.	+	.	Note "Single pUC clone. "
CHROMOSOME_III	assembly_tag	annotation	13307750	13307762	.	+	.	Note "Single pUC clone"
CHROMOSOME_III	assembly_tag	Clone	13317580	13317583	.	-	.	Note "left end: F53A2"
CHROMOSOME_III	assembly_tag	Clone	13317580	13317583	.	-	.	Note "left end: F53A2"
CHROMOSOME_III	assembly_tag	Finished	13317580	13317583	.	-	.	Note "Left: F53A2"
CHROMOSOME_III	assembly_tag	Clone	13317679	13317683	.	+	.	Note "right end: Y43F4B"
CHROMOSOME_III	assembly_tag	Finished	13317680	13317683	.	+	.	Note "Right: Y43F4B"
CHROMOSOME_III	assembly_tag	Finished	13360200	13360203	.	+	.	Note "Left: Y43F4C"
CHROMOSOME_III	assembly_tag	Clone	13360300	13360303	.	+	.	Note "right end: F53A2"
CHROMOSOME_III	assembly_tag	Clone	13360300	13360303	.	+	.	Note "left end: Y43F4C"
CHROMOSOME_III	assembly_tag	Clone	13360300	13360303	.	-	.	Note "right end: F53A2\n"
CHROMOSOME_III	assembly_tag	Finished	13360300	13360303	.	-	.	Note "Right: F53A2"
CHROMOSOME_III	assembly_tag	Clone	13361554	13361557	.	-	.	Note "right end: Y43F4C"
CHROMOSOME_III	assembly_tag	Clone	13361554	13361557	.	-	.	Note "left end: left end of T03F6"
CHROMOSOME_III	assembly_tag	Finished	13361557	13361560	.	+	.	Note "Left: T03F6"
CHROMOSOME_III	assembly_tag	Clone	13361557	13361560	.	+	.	Note "left end: T03F6"
CHROMOSOME_III	assembly_tag	Finished	13361654	13361657	.	+	.	Note "Right: Y43F4C"
CHROMOSOME_III	assembly_tag	Finished	13396007	13396010	.	+	.	Note "Left: F11F1"
CHROMOSOME_III	assembly_tag	Clone	13396107	13396110	.	-	.	Note "right end: END OF T03F6"
CHROMOSOME_III	assembly_tag	Clone	13406009	13406012	.	+	.	Note "left end: F45G2"
CHROMOSOME_III	assembly_tag	Clone	13406009	13406012	.	+	.	Note "left end: F45G2"
CHROMOSOME_III	assembly_tag	Finished	13406009	13406012	.	+	.	Note "Left: F45G2"
CHROMOSOME_III	assembly_tag	Finished	13406109	13406112	.	+	.	Note "Right: F11F1"
CHROMOSOME_III	assembly_tag	Clone	13430168	13430171	.	+	.	Note "right end: end of F11F1"
CHROMOSOME_III	assembly_tag	Finished	13442213	13442216	.	+	.	Note "Left: Y76A2A"
CHROMOSOME_III	assembly_tag	Finished	13442314	13442317	.	+	.	Note "Right: F45G2"
CHROMOSOME_III	assembly_tag	Clone	13442314	13442317	.	+	.	Note "right end: F45G2"
CHROMOSOME_III	assembly_tag	Clone	13442314	13442317	.	+	.	Note "right end: F45G2"
CHROMOSOME_III	assembly_tag	annotation	13446486	13448018	.	+	.	Note "[X] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n"
CHROMOSOME_III	assembly_tag	annotation	13447292	13447312	.	+	.	Note "[ ] Tandem repeat \n[ ] Single clone region \n[X] Forced join \n[ ] Other \nComment\n"
CHROMOSOME_III	assembly_tag	annotation	13450772	13450787	.	+	.	Note "First select a Feature -\n[] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle stranded primer in loop of inverted\nrepeat\n\n\n\n"
CHROMOSOME_III	assembly_tag	Clone	13461401	13461404	.	+	.	Note "left end: T27E9"
CHROMOSOME_III	assembly_tag	Clone	13461401	13461404	.	+	.	Note "left end: T27E9"
CHROMOSOME_III	assembly_tag	Finished	13461401	13461404	.	+	.	Note "Left: T27E9"
CHROMOSOME_III	assembly_tag	Finished	13461501	13461504	.	+	.	Note "Right: Y76A2A"
CHROMOSOME_III	assembly_tag	Finished	13483542	13483545	.	+	.	Note "Left: T28A8"
CHROMOSOME_III	assembly_tag	Clone	13483542	13483545	.	+	.	Note "left end: T28A8"
CHROMOSOME_III	assembly_tag	Clone	13483542	13483545	.	-	.	Note "left end: T28A8"
CHROMOSOME_III	assembly_tag	Finished	13483642	13483645	.	+	.	Note "Right: T27E9"
CHROMOSOME_III	assembly_tag	Clone	13498202	13498207	.	+	.	Note "right end: Y43F4"
CHROMOSOME_III	assembly_tag	Clone	13500468	13500471	.	+	.	Note "right end: T27E9"
CHROMOSOME_III	assembly_tag	Finished	13517826	13517829	.	+	.	Note "Left: Y76A2B "
CHROMOSOME_III	assembly_tag	Clone	13517926	13517929	.	+	.	Note "right end: T28A8"
CHROMOSOME_III	assembly_tag	Clone	13517926	13517929	.	+	.	Note "right end: T28A8"
CHROMOSOME_III	assembly_tag	Finished	13517926	13517929	.	+	.	Note "Right: T28A8"
CHROMOSOME_III	assembly_tag	Clone	13553592	13553595	.	+	.	Note "left end: T05D4 - this could be the right hand \nend as there is no overlap info\n(27-7-96)"
CHROMOSOME_III	assembly_tag	Finished	13553592	13553595	.	+	.	Note "Left: T05D4"
CHROMOSOME_III	assembly_tag	Clone	13553592	13553595	.	+	.	Note "left end: T05D4"
CHROMOSOME_III	assembly_tag	Finished	13553692	13553695	.	+	.	Note "Right: Y76A2B"
CHROMOSOME_III	assembly_tag	annotation	13576122	13576124	.	+	.	Note "probably TTAT"
CHROMOSOME_III	assembly_tag	annotation	13583763	13586203	.	+	.	Note "tandem repeat, not fully finished\n\npredominant element \n34mer eg TTTTTCCGCAAGTACATTTTTCCGCCGGTTTGAG\n\nlength to end of cosmid ~3160 by restriction digest"
CHROMOSOME_III	assembly_tag	Clone	13586200	13586203	.	+	.	Note "right end: T05D4 - this could be the left end as\nthere is no overlap data (27-7-96)."
CHROMOSOME_III	assembly_tag	Finished	13586200	13586203	.	+	.	Note "Right: T05D4"
CHROMOSOME_III	assembly_tag	Finished	13602506	13602509	.	+	.	Note "Left: T25C8"
CHROMOSOME_III	assembly_tag	Clone	13602506	13602509	.	+	.	Note "left end: Beginning of T25C8"
CHROMOSOME_III	assembly_tag	Clone	13618003	13618006	.	+	.	Note "left end: T12D8"
CHROMOSOME_III	assembly_tag	Finished	13618003	13618006	.	+	.	Note "Left: T12D8"
CHROMOSOME_III	assembly_tag	Clone	13618003	13618006	.	+	.	Note "left end: Beginning of T12D8"
CHROMOSOME_III	assembly_tag	Finished	13618103	13618106	.	+	.	Note "Right: T25C8"
CHROMOSOME_III	assembly_tag	Clone	13634954	13634957	.	+	.	Note "right end: End of T25C8"
CHROMOSOME_III	assembly_tag	Finished	13655255	13655258	.	+	.	Note "Left: ZK525"
CHROMOSOME_III	assembly_tag	Clone	13655352	13655355	.	+	.	Note "right end: T12D8"
CHROMOSOME_III	assembly_tag	Finished	13655352	13655355	.	+	.	Note "Right: T12D8"
CHROMOSOME_III	assembly_tag	Clone	13655352	13655355	.	+	.	Note "right end: T12D8"
CHROMOSOME_III	assembly_tag	annotation	13663786	13663790	.	+	.	Note "Tn1000 transposon has been removed from here."
CHROMOSOME_III	assembly_tag	Clone	13675520	13675523	.	+	.	Note "left end: ZK520"
CHROMOSOME_III	assembly_tag	Finished	13675520	13675523	.	+	.	Note "Left: "
CHROMOSOME_III	assembly_tag	Clone	13675520	13675523	.	-	.	Note "left end: ZK520"
CHROMOSOME_III	assembly_tag	Finished	13675620	13675623	.	+	.	Note "Right: ZK525"
CHROMOSOME_III	assembly_tag	Clone	13681022	13681025	.	-	.	Note "right end: ZK525"
CHROMOSOME_III	assembly_tag	Clone	13710770	13710773	.	+	.	Note "left end: W06F12"
CHROMOSOME_III	assembly_tag	Clone	13710770	13710773	.	+	.	Note "left end: BEGINNING OF W06F12"
CHROMOSOME_III	assembly_tag	Finished	13710770	13710773	.	+	.	Note "Left: W06F12"
CHROMOSOME_III	assembly_tag	Finished	13710870	13710873	.	+	.	Note "Right: "
CHROMOSOME_III	assembly_tag	Finished	13740185	13740188	.	+	.	Note "Left: K08E3"
CHROMOSOME_III	assembly_tag	Clone	13740185	13740188	.	+	.	Note "left end: K08E3"
CHROMOSOME_III	assembly_tag	cosmid	13740185	13740188	.	+	.	Note "vector: CAF:END=Left::loristB"
CHROMOSOME_III	assembly_tag	Clone	13740185	13740188	.	+	.	Note "left end: Beginning of K08E3"
CHROMOSOME_III	assembly_tag	cosmid	13740185	13740188	.	-	.	Note "vector: CAF:END=Left::loristB"
CHROMOSOME_III	assembly_tag	Finished	13740286	13740289	.	+	.	Note "Right: W06F12"
CHROMOSOME_III	assembly_tag	Clone	13740648	13740651	.	+	.	Note "right end: W06F12"
CHROMOSOME_III	assembly_tag	repeat	13748402	13749701	.	+	.
CHROMOSOME_III	assembly_tag	annotation	13749707	13750528	.	+	.	Note "tandem repeat region with typical repeat\nelement GAGACTTTCGTGGTGAGACCTTTGTGGT (a\n28-mer). Restriction digest shows that\n130 bases of repeat region are missing\nfrom this assembly."
CHROMOSOME_III	assembly_tag	repeat	13752474	13753243	.	+	.
CHROMOSOME_III	assembly_tag	repeat	13753255	13754323	.	+	.
CHROMOSOME_III	assembly_tag	Inverted	13774860	13775632	.	-	.	Note "Repeat: "
CHROMOSOME_III	assembly_tag	Inverted	13775703	13776496	.	+	.	Note "Repeat: "
CHROMOSOME_III	assembly_tag	Inverted	13778974	13779080	.	-	.	Note "Repeat: "
CHROMOSOME_III	assembly_tag	annotation	13779502	13779596	.	+	.	Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -single pUC18 clone in inverted repeatregion. Size of the region is confirmedby restriction digest"
CHROMOSOME_III	assembly_tag	Inverted	13779558	13779664	.	+	.	Note "Repeat: "
CHROMOSOME_III	assembly_tag	Finished	13779698	13779701	.	+	.	Note "Left: 3R5"
CHROMOSOME_III	assembly_tag	Clone	13779746	13779749	.	+	.	Note "right end: K08E3"
CHROMOSOME_III	assembly_tag	Finished	13779746	13779749	.	+	.	Note "Right: K08E3"
CHROMOSOME_III	assembly_tag	Clone	13779746	13779749	.	+	.	Note "right end: K08E3"
CHROMOSOME_III	assembly_tag	cosmid	13779746	13779749	.	+	.	Note "vector: CAF:END=Right::loristB"
CHROMOSOME_III	assembly_tag	cosmid	13779746	13779749	.	-	.	Note "vector: CAF:END=Right::loristB"
CHROMOSOME_III	assembly_tag	annotation	13780417	13780451	.	+	.	Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only by a single subclone which has been sequenced with both primer and terminator chemistries. Subclone is taken from a library made from a pcr product, the overall assembly is consistent with the size of the product when run on a gel."
CHROMOSOME_III	assembly_tag	Finished	13782337	13782342	.	+	.	Note "Left: cTel5"
CHROMOSOME_III	assembly_tag	Finished	13782392	13782395	.	+	.	Note "Right: 3R5"
CHROMOSOME_III	assembly_tag	Finished	13783264	13783268	.	+	.	Note "Right: cTel5"
CHROMOSOME_III	GenePair_STS	structural	1	2127	.	+	.	PCR_product "smd_Y55B1A_115.d"
CHROMOSOME_III	Genomic_canonical	Sequence	1	4006	.	+	.	Sequence "cTel54X"
CHROMOSOME_III		Homol_data	1	4006	.	+	.	Homol_data "cTel54X:wublastx_yeast"
CHROMOSOME_III		Homol_data	1	4006	.	+	.	Homol_data "cTel54X:wublastx_slimSwissProt"
CHROMOSOME_III		Homol_data	1	4006	.	+	.	Homol_data "cTel54X:wublastx_worm"
CHROMOSOME_III		Homol_data	1	4006	.	+	.	Homol_data "cTel54X:wublastx_slimTrEMBL"
CHROMOSOME_III		Homol_data	1	4006	.	+	.	Homol_data "cTel54X:wublastx_human"
CHROMOSOME_III		Homol_data	1	4006	.	+	.	Homol_data "cTel54X:wublastx_fly"
CHROMOSOME_III		Homol_data	1	150000	.	+	.	Homol_data "BLAT_EMBL:SUPERLINK_RW3A_1"
CHROMOSOME_III		Homol_data	1	150000	.	+	.	Homol_data "BLAT_EST:SUPERLINK_RW3A_1"
CHROMOSOME_III		Homol_data	1	150000	.	+	.	Homol_data "BLATX_NEMATODE:SUPERLINK_RW3A_1"
CHROMOSOME_III		Homol_data	1	150000	.	+	.	Homol_data "BLAT_mRNA:SUPERLINK_RW3A_1"
CHROMOSOME_III		Feature_data	1	150000	.	+	.	Feature_data "Confirmed_intron_EMBL:SUPERLINK_RW3A_1"
CHROMOSOME_III		Feature_data	1	150000	.	+	.	Feature_data "Confirmed_intron_mRNA:SUPERLINK_RW3A_1"
CHROMOSOME_III		Feature_data	1	150000	.	+	.	Feature_data "Confirmed_intron_EST:SUPERLINK_RW3A_1"
CHROMOSOME_III	Link	Sequence	1	3339160	.	+	.	Sequence "SUPERLINK_RW3A"
CHROMOSOME_III	Link	Sequence	1	13783268	.	+	.	Sequence "CHROMOSOME_III"
CHROMOSOME_III	GenePair_STS	structural	1059	2254	.	+	.	PCR_product "sjj_cTel54X.1"
CHROMOSOME_III	RNAi	experimental	1059	2254	.	+	.	RNAi "JA:cTel54X.1"
CHROMOSOME_III	GenePair_STS	structural	1059	2254	.	+	.	PCR_product "mv_cTel54X.1"
CHROMOSOME_III		Microarray_aff	1271	1921	.	+	.	Microarray_aff "Aff_CTEL54X.A"
CHROMOSOME_III		Homol_data	3907	35782	.	+	.	Homol_data "H10E21:wublastx_worm"
CHROMOSOME_III	Genomic_canonical	Sequence	3907	35782	.	+	.	Sequence "H10E21"
CHROMOSOME_III		Homol_data	3907	35782	.	+	.	Homol_data "H10E21:wublastx_slimSwissProt"
CHROMOSOME_III		Homol_data	3907	35782	.	+	.	Homol_data "H10E21:waba"
CHROMOSOME_III		Homol_data	3907	35782	.	+	.	Homol_data "H10E21:wublastx_human"
CHROMOSOME_III		Homol_data	3907	35782	.	+	.	Homol_data "H10E21:wublastx_slimTrEMBL"
CHROMOSOME_III		Homol_data	3907	35782	.	+	.	Homol_data "H10E21:wublastx_fly"
CHROMOSOME_III		Homol_data	3907	35782	.	+	.	Homol_data "H10E21:wublastx_yeast"
CHROMOSOME_III	curated	Sequence	8856	11940	.	+	.	Sequence "H10E21.2"
CHROMOSOME_III	RNAi	experimental	9773	11076	.	+	.	RNAi "TH:327F11"
CHROMOSOME_III	GenePair_STS	structural	9773	11076	.	+	.	PCR_product "TH:327F11"
CHROMOSOME_III	GenePair_STS	structural	9892	11096	.	+	.	PCR_product "TH:340C7"
CHROMOSOME_III	RNAi	experimental	9892	11096	.	+	.	RNAi "TH:340C7"
CHROMOSOME_III	Expr_profile	Expression	10826	13068	.	+	.	Expr_profile "H10E21.2"
CHROMOSOME_III	GenePair_STS	structural	10826	13068	.	+	.	PCR_product "mv_H10E21.2"
CHROMOSOME_III	GenePair_STS	structural	10826	13068	.	+	.	PCR_product "sjj_H10E21.2"
CHROMOSOME_III		Microarray_aff	11057	12549	.	+	.	Microarray_aff "Aff_H10E21.2"
CHROMOSOME_III	RNAi	experimental	11826	13152	.	+	.	RNAi "TH:327E8"
CHROMOSOME_III		Microarray_aff	12189	13200	.	+	.	Microarray_aff "Aff_H10E21.3"
CHROMOSOME_III	GenePair_STS	structural	13103	14054	.	+	.	PCR_product "mv_H10E21.3"
CHROMOSOME_III	Expr_profile	Expression	13103	14054	.	+	.	Expr_profile "H10E21.3"
CHROMOSOME_III	GenePair_STS	structural	13103	14054	.	+	.	PCR_product "sjj_H10E21.3"
CHROMOSOME_III	RNAi	experimental	13103	14054	.	+	.	RNAi "JA:H10E21.3"
CHROMOSOME_III	RNAi	experimental	13508	14730	.	+	.	RNAi "TH:340E12"
CHROMOSOME_III	Expr_profile	Expression	15681	17220	.	+	.	Expr_profile "H10E21.1"
CHROMOSOME_III	RNAi	experimental	15681	17220	.	+	.	RNAi "JA:H10E21.1"
CHROMOSOME_III	GenePair_STS	structural	15681	17220	.	+	.	PCR_product "sjj_H10E21.1"
CHROMOSOME_III	GenePair_STS	structural	15681	17220	.	+	.	PCR_product "mv_H10E21.1"
CHROMOSOME_III	RNAi	experimental	15737	17234	.	+	.	RNAi "TH:327E11"
CHROMOSOME_III	GenePair_STS	structural	15737	17234	.	+	.	PCR_product "TH:327E11"
CHROMOSOME_III		Microarray_aff	16080	17280	.	+	.	Microarray_aff "Aff_H10E21.1"
CHROMOSOME_III	UTR	UTR	16180	16806	.	+	.	UTR "5_UTR:H10E21.1"
CHROMOSOME_III	curated	Sequence	16807	17279	.	+	.	Sequence "H10E21.1"
CHROMOSOME_III	cDNA_for_RNAi	experimental	17395	19570	.	+	.	Sequence "yk387f12"
CHROMOSOME_III	RNAi	experimental	17395	19570	.	+	.	RNAi "SA:yk387f12"
CHROMOSOME_III		Microarray_aff	17421	19395	.	+	.	Microarray_aff "Aff_H10E21.4"
CHROMOSOME_III	GenePair_STS	structural	17424	19657	.	+	.	PCR_product "sjj_H10E21.4"
CHROMOSOME_III	RNAi	experimental	17424	19657	.	+	.	RNAi "JA:H10E21.4"
CHROMOSOME_III	GenePair_STS	structural	17424	19657	.	+	.	PCR_product "mv_H10E21.4"
CHROMOSOME_III	RNAi	experimental	17493	19431	.	+	.	RNAi "TH:334G6"
CHROMOSOME_III	GenePair_STS	structural	17493	19431	.	+	.	PCR_product "TH:334G6"
CHROMOSOME_III		Microarray_aff	20755	21709	.	+	.	Microarray_aff "Aff_H10E21.5"
CHROMOSOME_III	RNAi	experimental	20974	21934	.	+	.	RNAi "TH:327B5"
CHROMOSOME_III	GenePair_STS	structural	20974	21934	.	+	.	PCR_product "TH:327B5"
CHROMOSOME_III	GenePair_STS	structural	22560	23935	.	+	.	PCR_product "mv_H10E21.5"
CHROMOSOME_III	RNAi	experimental	22560	23935	.	+	.	RNAi "JA:H10E21.5"
CHROMOSOME_III	Expr_profile	Expression	22560	23935	.	+	.	Expr_profile "H10E21.5"
CHROMOSOME_III	GenePair_STS	structural	22560	23935	.	+	.	PCR_product "sjj_H10E21.5"
CHROMOSOME_III	GenePair_STS	structural	31611	32588	.	+	.	PCR_product "TH:328D1"
CHROMOSOME_III	RNAi	experimental	31611	32588	.	+	.	RNAi "TH:328D1"
CHROMOSOME_III	Genomic_canonical	Sequence	35583	66295	.	+	.	Sequence "W05G11"
CHROMOSOME_III		Homol_data	35583	66295	.	+	.	Homol_data "W05G11:wublastx_yeast"
CHROMOSOME_III		Homol_data	35583	66295	.	+	.	Homol_data "W05G11:wublastx_worm"
CHROMOSOME_III		Homol_data	35583	66295	.	+	.	Homol_data "W05G11:waba"
CHROMOSOME_III		Homol_data	35583	66295	.	+	.	Homol_data "W05G11:wublastx_slimSwissProt"
CHROMOSOME_III		Homol_data	35583	66295	.	+	.	Homol_data "W05G11:wublastx_slimTrEMBL"
CHROMOSOME_III		Homol_data	35583	66295	.	+	.	Homol_data "W05G11:wublastx_fly"
CHROMOSOME_III		Homol_data	35583	66295	.	+	.	Homol_data "W05G11:wublastx_human"
CHROMOSOME_III		Microarray_aff	35650	36346	.	+	.	Microarray_aff "Aff_W05G11.4"
CHROMOSOME_III	GenePair_STS	structural	37074	38187	.	+	.	PCR_product "mv_W05G11.4"
CHROMOSOME_III	Expr_profile	Expression	37074	38187	.	+	.	Expr_profile "W05G11.4"
CHROMOSOME_III	GenePair_STS	structural	37074	38187	.	+	.	PCR_product "sjj_W05G11.4"
CHROMOSOME_III	RNAi	experimental	37074	38187	.	+	.	RNAi "JA:W05G11.4"
CHROMOSOME_III	RNAi	experimental	40787	42268	.	+	.	RNAi "TH:328C10"
CHROMOSOME_III	GenePair_STS	structural	40787	42268	.	+	.	PCR_product "TH:328C10"
CHROMOSOME_III	curated	Sequence	41062	41970	.	+	.	Sequence "W05G11.3"
CHROMOSOME_III	RNAi	experimental	41084	41950	.	+	.	RNAi "SA:yk254c9"
CHROMOSOME_III	cDNA_for_RNAi	experimental	41084	41950	.	+	.	Sequence "yk254c9"
CHROMOSOME_III	GenePair_STS	structural	41098	42269	.	+	.	PCR_product "sjj_W05G11.3"
CHROMOSOME_III	Expr_profile	Expression	41098	42269	.	+	.	Expr_profile "W05G11.3"
CHROMOSOME_III		Microarray_aff	41371	41971	.	+	.	Microarray_aff "Aff_W05G11.3"
CHROMOSOME_III	GenePair_STS	structural	46670	48150	.	+	.	PCR_product "smd_Y53G8B_93.e"
CHROMOSOME_III	GenePair_STS	structural	57458	58772	.	+	.	PCR_product "smd_W05G11.2"
CHROMOSOME_III	RNAi	experimental	57458	58772	.	+	.	RNAi "JA:W05G11.2"
CHROMOSOME_III	Expr_profile	Expression	57458	58772	.	+	.	Expr_profile "W05G11.2"
CHROMOSOME_III	GenePair_STS	structural	57458	58772	.	+	.	PCR_product "sjj_W05G11.2"
CHROMOSOME_III	GenePair_STS	structural	57458	58772	.	+	.	PCR_product "mv_W05G11.2"
CHROMOSOME_III	curated	Sequence	57481	58681	.	+	.	Sequence "W05G11.2"
CHROMOSOME_III	RNAi	experimental	57483	58334	.	+	.	RNAi "TH:341B1"
CHROMOSOME_III	GenePair_STS	structural	57483	58334	.	+	.	PCR_product "TH:341B1"
CHROMOSOME_III	GenePair_STS	structural	57489	58956	.	+	.	PCR_product "TH:335C11"
CHROMOSOME_III	RNAi	experimental	57489	58956	.	+	.	RNAi "TH:335C11"
CHROMOSOME_III		Microarray_aff	57680	58682	.	+	.	Microarray_aff "Aff_W05G11.2"
CHROMOSOME_III	Expr_profile	Expression	59216	60873	.	+	.	Expr_profile "W05G11.5"
CHROMOSOME_III	GenePair_STS	structural	59216	60873	.	+	.	PCR_product "mv_W05G11.5"
CHROMOSOME_III	RNAi	experimental	59216	60873	.	+	.	RNAi "JA:W05G11.5"
CHROMOSOME_III	GenePair_STS	structural	59216	60873	.	+	.	PCR_product "smd_W05G11.5"
CHROMOSOME_III	GenePair_STS	structural	59216	60873	.	+	.	PCR_product "sjj_W05G11.5"
CHROMOSOME_III		Microarray_aff	59371	60519	.	+	.	Microarray_aff "Aff_W05G11.5"
CHROMOSOME_III	GenePair_STS	structural	59622	60872	.	+	.	PCR_product "TH:328D10"
CHROMOSOME_III	RNAi	experimental	59622	60872	.	+	.	RNAi "TH:328D10"
CHROMOSOME_III	GenePair_STS	structural	62848	63966	.	+	.	PCR_product "sjj_W05G11.6"
CHROMOSOME_III	Expr_profile	Expression	62848	63966	.	+	.	Expr_profile "W05G11.6"
CHROMOSOME_III	RNAi	experimental	62848	63966	.	+	.	RNAi "JA:W05G11.6"
CHROMOSOME_III	GenePair_STS	structural	62848	63966	.	+	.	PCR_product "mv_W05G11.6"
CHROMOSOME_III	cDNA_for_RNAi	experimental	62947	66235	.	+	.	Sequence "yk373g10"
CHROMOSOME_III	RNAi	experimental	62947	66235	.	+	.	RNAi "SA:yk373g10"
CHROMOSOME_III		Microarray_aff	62988	63723	.	+	.	Microarray_aff "Aff_W05G11.6"
CHROMOSOME_III	GenePair_STS	structural	63398	65053	.	+	.	PCR_product "smd_W05G11.6"
CHROMOSOME_III	GenePair_STS	structural	63559	65052	.	+	.	PCR_product "TH:326C11"
CHROMOSOME_III	RNAi	experimental	63559	65052	.	+	.	RNAi "TH:326C11"
CHROMOSOME_III		Homol_data	64786	92285	.	+	.	Homol_data "F54C4:wublastx_worm"
CHROMOSOME_III		Homol_data	64786	92285	.	+	.	Homol_data "F54C4:wublastx_fly"
CHROMOSOME_III		Homol_data	64786	92285	.	+	.	Homol_data "F54C4:wublastx_yeast"
CHROMOSOME_III		Homol_data	64786	92285	.	+	.	Homol_data "F54C4:wublastx_human"
CHROMOSOME_III	Genomic_canonical	Sequence	64786	92285	.	+	.	Sequence "F54C4"
CHROMOSOME_III		Homol_data	64786	92285	.	+	.	Homol_data "F54C4:wublastx_slimSwissProt"
CHROMOSOME_III		Homol_data	64786	92285	.	+	.	Homol_data "F54C4:wublastx_slimTrEMBL"
CHROMOSOME_III		Homol_data	64786	92285	.	+	.	Homol_data "F54C4:waba"
CHROMOSOME_III	RNAi	experimental	68573	69745	.	+	.	RNAi "TH:326E11"
CHROMOSOME_III	GenePair_STS	structural	68573	69745	.	+	.	PCR_product "TH:326E11"
CHROMOSOME_III	GenePair_STS	structural	68628	69765	.	+	.	PCR_product "sjj_F54C4.2"
CHROMOSOME_III	RNAi	experimental	68628	69765	.	+	.	RNAi "JA:F54C4.2"
CHROMOSOME_III	Expr_profile	Expression	68628	69765	.	+	.	Expr_profile "F54C4.2"
CHROMOSOME_III	GenePair_STS	structural	69032	70027	.	+	.	PCR_product "smd_F54C4.2"
CHROMOSOME_III		Microarray_aff	69225	69738	.	+	.	Microarray_aff "Aff_F54C4.2"
CHROMOSOME_III		Microarray_aff	70527	73648	.	+	.	Microarray_aff "Aff_F54C4.3"
CHROMOSOME_III	RNAi	experimental	84287	86504	.	+	.	RNAi "JA:F54C4.3"
CHROMOSOME_III	GenePair_STS	structural	84287	86504	.	+	.	PCR_product "sjj_F54C4.3"
CHROMOSOME_III	Expr_profile	Expression	84287	86504	.	+	.	Expr_profile "F54C4.3"
CHROMOSOME_III	GenePair_STS	structural	84287	86504	.	+	.	PCR_product "mv_F54C4.3"
CHROMOSOME_III	RNAi	experimental	85757	86456	.	+	.	RNAi "TH:327C11"
CHROMOSOME_III	RNAi	experimental	85801	86343	.	+	.	RNAi "TH:340D11"
CHROMOSOME_III	RNAi	experimental	86440	87338	.	+	.	RNAi "TH:330C1"
CHROMOSOME_III	GenePair_STS	structural	86440	87338	.	+	.	PCR_product "TH:330C1"
CHROMOSOME_III	Expr_profile	Expression	86482	87392	.	+	.	Expr_profile "F54C4.4"
CHROMOSOME_III	GenePair_STS	structural	86482	87392	.	+	.	PCR_product "sjj_F54C4.4"
CHROMOSOME_III	GenePair_STS	structural	86482	87392	.	+	.	PCR_product "mv_F54C4.4"
CHROMOSOME_III	RNAi	experimental	86482	87392	.	+	.	RNAi "JA:F54C4.4"
CHROMOSOME_III		Microarray_aff	86779	87259	.	+	.	Microarray_aff "Aff_F54C4.4"
CHROMOSOME_III	GenePair_STS	structural	87534	89224	.	+	.	PCR_product "mv_F54C4.1"
CHROMOSOME_III	GenePair_STS	structural	87534	89224	.	+	.	PCR_product "sjj_F54C4.1"
CHROMOSOME_III	Expr_profile	Expression	87534	89224	.	+	.	Expr_profile "F54C4.1"
CHROMOSOME_III	RNAi	experimental	87534	89224	.	+	.	RNAi "JA:F54C4.1"
CHROMOSOME_III	UTR	UTR	87557	87562	.	+	.	UTR "5_UTR:F54C4.1"
CHROMOSOME_III	curated	Sequence	87563	89151	.	+	.	Sequence "F54C4.1"
CHROMOSOME_III		Microarray_aff	87563	89152	.	+	.	Microarray_aff "Aff_F54C4.1"
CHROMOSOME_III	RNAi	experimental	87621	89285	.	+	.	RNAi "TH:329D10"
CHROMOSOME_III	GenePair_STS	structural	87621	89285	.	+	.	PCR_product "TH:329D10"
CHROMOSOME_III	UTR	UTR	89152	89229	.	+	.	UTR "3_UTR:F54C4.1"
CHROMOSOME_III	GenePair_STS	structural	89525	91902	.	+	.	PCR_product "sjj_C29F9.7"
CHROMOSOME_III	Expr_profile	Expression	89525	91902	.	+	.	Expr_profile "C29F9.7"
CHROMOSOME_III	GenePair_STS	structural	89525	91902	.	+	.	PCR_product "mv_C29F9.7"
CHROMOSOME_III	RNAi	experimental	89525	91902	.	+	.	RNAi "JA:C29F9.7"
CHROMOSOME_III		Homol_data	89636	136231	.	+	.	Homol_data "C29F9:wublastx_worm"
CHROMOSOME_III		Homol_data	89636	136231	.	+	.	Homol_data "C29F9:wublastx_slimSwissProt"
CHROMOSOME_III		Homol_data	89636	136231	.	+	.	Homol_data "C29F9:waba"
CHROMOSOME_III	Genomic_canonical	Sequence	89636	136231	.	+	.	Sequence "C29F9"
CHROMOSOME_III		Homol_data	89636	136231	.	+	.	Homol_data "C29F9:wublastx_yeast"
CHROMOSOME_III		Homol_data	89636	136231	.	+	.	Homol_data "C29F9:wublastx_fly"
CHROMOSOME_III		Homol_data	89636	136231	.	+	.	Homol_data "C29F9:wublastx_slimTrEMBL"
CHROMOSOME_III		Homol_data	89636	136231	.	+	.	Homol_data "C29F9:wublastx_human"
CHROMOSOME_III		Microarray_aff	89642	91706	.	+	.	Microarray_aff "Aff_C29F9.7"
CHROMOSOME_III	RNAi	experimental	89887	92167	.	+	.	RNAi "TH:335E12"
CHROMOSOME_III		Microarray_aff	95393	97520	.	+	.	Microarray_aff "Aff_C29F9.8"
CHROMOSOME_III	GenePair_STS	structural	95485	97769	.	+	.	PCR_product "sjj_C29F9.8"
CHROMOSOME_III	RNAi	experimental	95485	97769	.	+	.	RNAi "JA:C29F9.8"
CHROMOSOME_III	Expr_profile	Expression	95485	97769	.	+	.	Expr_profile "C29F9.8"
CHROMOSO