##gff-version 2 ##date 2003-02-20 ##sequence-region CHROMOSOME_IV 1 17493790 CHROMOSOME_IV assembly_tag Finished 1 6 . + . Note "Left: cTel4X" CHROMOSOME_IV assembly_tag Clone 8721617 8721620 . + . Note "left end: Beginning of F21D5" CHROMOSOME_IV assembly_tag Clone 8742690 8742693 . + . Note "left end: Beginning of F20C5" CHROMOSOME_IV assembly_tag Finished 8742690 8742693 . + . Note "Left: F20C5" CHROMOSOME_IV assembly_tag Clone 8742690 8742693 . + . Note "left end: F20C5" CHROMOSOME_IV assembly_tag Clone 8763704 8763707 . + . Note "right end: Right end F21D5" CHROMOSOME_IV assembly_tag Clone 8772379 8772382 . + . Note "left end: Start of C33D9" CHROMOSOME_IV assembly_tag Clone 8772379 8772382 . + . Note "left end: BEGINNING OF C33D9" CHROMOSOME_IV assembly_tag Finished 8772379 8772382 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 8772477 8772482 . + . Note "Right: F20C5" CHROMOSOME_IV assembly_tag Clone 8785354 8785357 . + . Note "right end: END OF F20C5" CHROMOSOME_IV assembly_tag annotation 8789725 8789725 . + . Note "missing A in this single (+) read (terminated). All other reads (7 -/1+) have A present. " CHROMOSOME_IV assembly_tag Clone 8806607 8806610 . + . Note "left end: Beginning of T28C6" CHROMOSOME_IV assembly_tag Finished 8806607 8806610 . + . Note "Left: T28C6" CHROMOSOME_IV assembly_tag Clone 8806607 8806610 . + . Note "left end: BEGINNING OF T28C6" CHROMOSOME_IV assembly_tag Finished 8806707 8806710 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 8815821 8815824 . + . Note "right end: END OF C33D9" CHROMOSOME_IV assembly_tag Clone 8840322 8840325 . + . Note "left end: Beginning of T11B7" CHROMOSOME_IV assembly_tag Clone 8840322 8840325 . + . Note "left end: Beginning of T11B7" CHROMOSOME_IV assembly_tag Finished 8840322 8840325 . + . Note "Left: T11B7" CHROMOSOME_IV assembly_tag Finished 8840422 8840425 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 8845138 8845141 . + . Note "right end: END of T28C6" CHROMOSOME_IV assembly_tag Clone 8857455 8857458 . + . Note "left end: Beginning of C09G9" CHROMOSOME_IV assembly_tag Finished 8857455 8857458 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 8857455 8857458 . + . Note "left end: Beginning of C09G9" CHROMOSOME_IV assembly_tag Finished 8857554 8857558 . + . Note "Right: T11B7 " CHROMOSOME_IV assembly_tag comment 8858928 8858933 . + . Note "?check no of Gs" CHROMOSOME_IV assembly_tag ambiguous 8859201 8859207 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8860005 8860011 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag compression 8860725 8860731 . + . Note "+" CHROMOSOME_IV assembly_tag compression 8864693 8864705 . + . Note "-" CHROMOSOME_IV assembly_tag compression 8864706 8864718 . + . Note "+" CHROMOSOME_IV assembly_tag ambiguous 8864707 8864715 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8864708 8864708 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag ambiguous 8864712 8864712 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag compression 8866371 8866382 . + . Note "-" CHROMOSOME_IV assembly_tag ambiguous 8867976 8867976 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag compression 8869817 8869833 . + . Note "both" CHROMOSOME_IV assembly_tag ambiguous 8869824 8869829 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8870283 8870283 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag ambiguous 8870514 8870520 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8870754 8870754 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag ambiguous 8870925 8870925 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag Clone 8874659 8874662 . + . Note "right end: End of T11B7 " CHROMOSOME_IV assembly_tag compression 8874793 8874804 . + . Note "+" CHROMOSOME_IV assembly_tag comment 8875775 8875801 . + . Note "?rerun this read" CHROMOSOME_IV assembly_tag compression 8879921 8879929 . + . Note "-" CHROMOSOME_IV assembly_tag oligo 8880227 8880244 . + . Note "serial#=C09G9.1 template=xn36b9.s1 sequence=CAACGGGTTTCATTATTG flags=Tm 50.5" CHROMOSOME_IV assembly_tag oligo 8880740 8880758 . + . Note "serial#=C09G9.3 template=xn39g1.s1 sequence=GAGAACTTTTTTGTTGCAG flags=Tm 51.1" CHROMOSOME_IV assembly_tag oligo 8881153 8881169 . + . Note "serial#=C09G9.2 template=xn35e5.s1 sequence=ATACAACTAGCCATGCC flags=Tm 52.2" CHROMOSOME_IV assembly_tag compression 8881339 8881352 . + . Note "+" CHROMOSOME_IV assembly_tag oligo 8884539 8884556 . + . Note "serial#=C09G9.4 template=xn32c3.s1 sequence=GAGTGTCAGCTAAAAATG flags=Tm 50.5" CHROMOSOME_IV assembly_tag ambiguous 8888296 8888302 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag compression 8889201 8889205 . + . Note "- see terminator for read xn39d8" CHROMOSOME_IV assembly_tag Clone 8889515 8889518 . + . Note "left end: Beginning of C27B7" CHROMOSOME_IV assembly_tag Finished 8889515 8889518 . + . Note "Left: C27B7" CHROMOSOME_IV assembly_tag Clone 8889515 8889518 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 8889615 8889618 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 8900218 8900221 . + . Note "right end: End of C09G9" CHROMOSOME_IV assembly_tag Clone 8918775 8918778 . + . Note "left end: D1046." CHROMOSOME_IV assembly_tag Finished 8918775 8918778 . + . Note "Left: D1046" CHROMOSOME_IV assembly_tag Clone 8918775 8918778 . + . Note "left end: D1046" CHROMOSOME_IV assembly_tag Finished 8918875 8918878 . + . Note "Right: C27B7" CHROMOSOME_IV assembly_tag Clone 8934783 8934786 . + . Note "right end: C27B7" CHROMOSOME_IV assembly_tag Finished 8962389 8962392 . + . Note "Left: VD1046R" CHROMOSOME_IV assembly_tag Clone 8962457 8962460 . + . Note "right end: D1046" CHROMOSOME_IV assembly_tag Finished 8962457 8962460 . + . Note "Right: D1046" CHROMOSOME_IV assembly_tag Clone 8962457 8962460 . + . Note "right end: D1046" CHROMOSOME_IV assembly_tag Finished 8962811 8962814 . + . Note "Left: C53B4" CHROMOSOME_IV assembly_tag Clone 8962811 8962814 . + . Note "left end: C53B4" CHROMOSOME_IV assembly_tag Clone 8962811 8962814 . + . Note "left end: Beginning of C53B4" CHROMOSOME_IV assembly_tag Finished 8962911 8962914 . + . Note "Right: VD1046R" CHROMOSOME_IV assembly_tag annotation 8965708 8965710 . + . Note "Region adjacent to inverted repeat covered by only one clone but oligo and terminator walks from cosmid DNA confirm (and so does restriction digest)." CHROMOSOME_IV assembly_tag Finished 8995491 8995494 . + . Note "Left: C53D6" CHROMOSOME_IV assembly_tag Clone 8995491 8995494 . + . Note "left end: Start of C53D6" CHROMOSOME_IV assembly_tag Clone 8995491 8995494 . + . Note "left end: Start of C53D6" CHROMOSOME_IV assembly_tag Finished 8995592 8995595 . + . Note "Right: C53B4" CHROMOSOME_IV assembly_tag Clone 9004399 9004402 . + . Note "right end: End of C53D4" CHROMOSOME_IV assembly_tag Finished 9037443 9037446 . + . Note "Left: Y73F4A" CHROMOSOME_IV assembly_tag Finished 9037543 9037546 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9037543 9037546 . + . Note "right end: C53D6" CHROMOSOME_IV assembly_tag Clone 9037543 9037546 . + . Note "right end: End of C53D6" CHROMOSOME_IV assembly_tag annotation 9045652 9048896 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[X] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nThis region contains forced joins and \nunsure bases." CHROMOSOME_IV assembly_tag Clone 9066138 9066143 . + . Note "left end: ZC410" CHROMOSOME_IV assembly_tag Finished 9066138 9066143 . + . Note "Left: ZC410" CHROMOSOME_IV assembly_tag Clone 9066138 9066143 . + . Note "left end: ZC410" CHROMOSOME_IV assembly_tag Clone 9066138 9066143 . + . Note "left end: Start of ZC410" CHROMOSOME_IV assembly_tag annotation 9066147 9066147 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nThis base was called A in ZC410" CHROMOSOME_IV assembly_tag annotation 9066155 9066155 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nThis base was called G in clone ZC410" CHROMOSOME_IV assembly_tag annotation 9066162 9066241 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[X] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_IV assembly_tag annotation 9066163 9067571 . + . Note "From almost the beginning of the cosmid cloning site to 1.435bp, multiple (approx 95) copies of a 15mer (RcD1) with the following variations: GATGGGTCTCACCAC GAAGGGTCTCACCAC AATGGGTCTCACCAC GAAAGGTCTCAATAC GAAGGGTGTCACCAC GAAAGGTCTCGCCAC GAAGGGTCTCGCCAC *A**GGT*TC***AC = CONSENSUS SEQUENCE (REF: Naclerio et al. (1992) J.Mol.Biol. vol.226 pp.159-168) We have been unable to obtain either cosmid or genomic PCR products across this region. However, restriction digest data suggests fragment sizes (from cosmid DNA) of 1.8kb from SspI- cut DNA and about 2kb from Sau3AI-cut DNA. This agrees approx. with the given sequence here. Because of the repetitive nature of this sequence, we cannot guarantee base accuracy across this region." CHROMOSOME_IV assembly_tag annotation 9066163 9067571 . + . Note "From almost the beginning of thecosmid cloning site to 1.435bp,multiple (approx 95) copies of a 15mer(RcD1) with the following variations:GATGGGTCTCACCACGAAGGGTCTCACCACAATGGGTCTCACCACGAAAGGTCTCAATACGAAGGGTGTCACCACGAAAGGTCTCGCCACGAAGGGTCTCGCCAC*A**GGT*TC***AC = CONSENSUS SEQUENCE(REF: Naclerio et al. (1992)J.Mol.Biol. vol.226 pp.159-168)We have been unable to obtain eithercosmid or genomic PCR products acrossthis region. However, restrictiondigest data suggests fragment sizes(from cosmid DNA) of 1.8kb from SspI-cut DNA and about 2kb from Sau3AI-cutDNA. This agrees approx. with thegiven sequence here.Because of the repetitive nature ofthis sequence, we cannot guaranteebase accuracy across this region." CHROMOSOME_IV assembly_tag Finished 9066238 9066241 . + . Note "Right: Y73F4A" CHROMOSOME_IV assembly_tag Clone 9094962 9094965 . + . Note "left end: Start of C01F6" CHROMOSOME_IV assembly_tag Clone 9094962 9094965 . + . Note "left end: C01F6" CHROMOSOME_IV assembly_tag Finished 9094962 9094965 . + . Note "Left: C01F6" CHROMOSOME_IV assembly_tag Clone 9094962 9094965 . + . Note "left end: left hand end of C01F6" CHROMOSOME_IV assembly_tag Finished 9095062 9095065 . + . Note "Right: ZC410" CHROMOSOME_IV assembly_tag Clone 9097849 9097854 . + . Note "right end: End of ZC410" CHROMOSOME_IV assembly_tag Clone 9126139 9126142 . + . Note "left end: Start of F23B2" CHROMOSOME_IV assembly_tag Clone 9126139 9126142 . - . Note "left end: F23B2" CHROMOSOME_IV assembly_tag Finished 9126139 9126142 . - . Note "Left: F23B2" CHROMOSOME_IV assembly_tag Finished 9126239 9126242 . + . Note "Right: C01F6" CHROMOSOME_IV assembly_tag annotation 9126543 9126543 . + . Note "reads 123 anmd 1408 (the same subclone) have bases AACTCT. All the rest have AATTCT" CHROMOSOME_IV assembly_tag comment 9127719 9127719 . + . Note "restored T 31-12-01 jes" CHROMOSOME_IV assembly_tag Clone 9135415 9135418 . - . Note "right end: C01F6" CHROMOSOME_IV assembly_tag comment 9137263 9137266 . - . Note "?this read is stolen from C01F6 but was not assembled in C01F6 and matches only read stolen from F23B2 in the C01F6 database" CHROMOSOME_IV assembly_tag comment 9137423 9137426 . - . Note "?this read was stolen from C01F6 but was not assembled in C01F6 and matches only F23B2 reads stolen into the C01F6 database" CHROMOSOME_IV assembly_tag comment 9152191 9152193 . + . Note "?" CHROMOSOME_IV assembly_tag Finished 9164949 9164952 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9164949 9164952 . + . Note "left end: C07C7" CHROMOSOME_IV assembly_tag Clone 9164949 9164952 . + . Note "left end: left hand end of C07C7" CHROMOSOME_IV assembly_tag Finished 9165049 9165052 . - . Note "Right: F23B2" CHROMOSOME_IV assembly_tag Clone 9168816 9168819 . + . Note "right end: right hand end of F23B2" CHROMOSOME_IV assembly_tag Clone 9186789 9186792 . + . Note "left end: left hand end of C46C2" CHROMOSOME_IV assembly_tag Clone 9186789 9186792 . + . Note "left end: left hand end of C46C2" CHROMOSOME_IV assembly_tag Finished 9186789 9186792 . + . Note "Left: C46C2" CHROMOSOME_IV assembly_tag Finished 9186889 9186892 . + . Note "Right: C07C7" CHROMOSOME_IV assembly_tag Clone 9208974 9208977 . + . Note "right end: right hand end of C07C7" CHROMOSOME_IV assembly_tag Finished 9227800 9227803 . + . Note "Left: Y11D7A" CHROMOSOME_IV assembly_tag Clone 9227900 9227903 . + . Note "right end: right hand end of C46C2" CHROMOSOME_IV assembly_tag Clone 9227900 9227903 . + . Note "right end: C46C2" CHROMOSOME_IV assembly_tag Finished 9227900 9227903 . + . Note "Right: C46C2" CHROMOSOME_IV assembly_tag annotation 9234882 9234884 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_IV assembly_tag annotation 9234969 9235087 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nPrimer only across arms and loop of \ninverted repeat" CHROMOSOME_IV assembly_tag annotation 9254136 9254300 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nThis region is covered by a short insert \nlibrary from pUC sw69a10" CHROMOSOME_IV assembly_tag annotation 9256949 9257424 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nThis area is covered by a short insert \nlibrary of pUC sw71d2" CHROMOSOME_IV assembly_tag Clone 9263106 9263109 . + . Note "left end: H22D14" CHROMOSOME_IV assembly_tag Finished 9285031 9285036 . + . Note "Left: H22D14" CHROMOSOME_IV assembly_tag Finished 9285131 9285136 . + . Note "Right: Y11D7A" CHROMOSOME_IV assembly_tag Clone 9285131 9285136 . + . Note "right end: Y11D7" CHROMOSOME_IV assembly_tag Clone 9285131 9285136 . - . Note "right end: Y11D7A" CHROMOSOME_IV assembly_tag Clone 9287950 9287953 . + . Note "left end: F14A5" CHROMOSOME_IV assembly_tag Finished 9287950 9287953 . + . Note "Left: F14A5" CHROMOSOME_IV assembly_tag Clone 9287950 9287953 . + . Note "left end: Beginning of F14A5" CHROMOSOME_IV assembly_tag Finished 9288050 9288053 . - . Note "Right: H22D14" CHROMOSOME_IV assembly_tag Clone 9294057 9294060 . + . Note "left end: Beginning of F49C12" CHROMOSOME_IV assembly_tag Clone 9294057 9294060 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 9294057 9294060 . + . Note "left end: Beginning of F49C12" CHROMOSOME_IV assembly_tag Finished 9294057 9294060 . + . Note "Left: F49C12" CHROMOSOME_IV assembly_tag Finished 9294057 9294160 . + . Note "Left: F49C12" CHROMOSOME_IV assembly_tag Finished 9294157 9294160 . + . Note "Right: F14A5" CHROMOSOME_IV assembly_tag Finished 9326617 9326620 . + . Note "Left: T20D3" CHROMOSOME_IV assembly_tag Clone 9326617 9326620 . + . Note "left end: Beginning of T20D3" CHROMOSOME_IV assembly_tag Clone 9326617 9326620 . + . Note "left end: Beginning of T20D3" CHROMOSOME_IV assembly_tag Finished 9326717 9326720 . + . Note "Right: F49C12" CHROMOSOME_IV assembly_tag Clone 9336453 9336456 . + . Note "right end: End of F49C12" CHROMOSOME_IV assembly_tag Clone 9359192 9359195 . + . Note "left end: C10C5" CHROMOSOME_IV assembly_tag Clone 9359192 9359195 . + . Note "left end: Beginning C10C5" CHROMOSOME_IV assembly_tag Finished 9359192 9359195 . + . Note "Left: C10C5" CHROMOSOME_IV assembly_tag Finished 9359292 9359295 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9365103 9365106 . + . Note "right end: T20D3" CHROMOSOME_IV assembly_tag Clone 9393312 9393315 . + . Note "left end: F56D5" CHROMOSOME_IV assembly_tag Clone 9393312 9393315 . + . Note "left end: F56D5" CHROMOSOME_IV assembly_tag Finished 9393312 9393315 . + . Note "Left: F56D5" CHROMOSOME_IV assembly_tag Finished 9393412 9393415 . + . Note "Right: C10C5" CHROMOSOME_IV assembly_tag Clone 9399921 9399924 . + . Note "right end: C10C5" CHROMOSOME_IV assembly_tag annotation 9409982 9410081 . + . Note "Approx 3 copies of Rc35. This is the beginning of an extensive region of multiple tandem repeats covering approx 2.5kb. Four repeat elements have been identified which are already known (Naclerio et al 1992 J.Mol.Biol.226,pp 159-168). Restriction data suggests that we may be missing approx 350bp of sequence (either Rc35 or RcD1 elements) There may be single base pair discrepancies in this region and it has not been completely double-stranded." CHROMOSOME_IV assembly_tag annotation 9410213 9410695 . + . Note "Approx 14 copies of repeat element Rc35 Restriction digest suggests that about 9 to 10 copies of this repeat element might be missing" CHROMOSOME_IV assembly_tag annotation 9410700 9411419 . + . Note "Approx 49 copies of repeat element RcD1 It is possible that some copies are missing." CHROMOSOME_IV assembly_tag annotation 9411495 9411654 . + . Note "Approx 16 copies of RcC9" CHROMOSOME_IV assembly_tag Clone 9431583 9431586 . + . Note "left end: F59B8" CHROMOSOME_IV assembly_tag Clone 9431583 9431586 . + . Note "left end: F59B8" CHROMOSOME_IV assembly_tag Finished 9431583 9431586 . + . Note "Left: F59B8" CHROMOSOME_IV assembly_tag Finished 9431683 9431686 . + . Note "Right: F56D5" CHROMOSOME_IV assembly_tag Clone 9433982 9433985 . + . Note "right end: F56D5" CHROMOSOME_IV assembly_tag Clone 9443306 9443309 . + . Note "left end: F38E11" CHROMOSOME_IV assembly_tag Clone 9443306 9443309 . + . Note "left end: F38E11" CHROMOSOME_IV assembly_tag Finished 9443306 9443309 . + . Note "Left: F38E11" CHROMOSOME_IV assembly_tag Finished 9443306 9443309 . + . Note "Left: F38E11" CHROMOSOME_IV assembly_tag Finished 9443406 9443409 . + . Note "Right: F59B8" CHROMOSOME_IV assembly_tag Finished 9443406 9443409 . + . Note "Right: F59B8" CHROMOSOME_IV assembly_tag annotation 9459463 9459463 . + . Note "One M13 clone has T base deleted in this position, 5 others confirm T base at this position." CHROMOSOME_IV assembly_tag Clone 9468811 9468814 . + . Note "right end: F59B8" CHROMOSOME_IV assembly_tag Finished 9481663 9481666 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9481763 9481766 . + . Note "right end: F38E11" CHROMOSOME_IV assembly_tag Finished 9481763 9481766 . + . Note "Right: F38E11" CHROMOSOME_IV assembly_tag Clone 9481763 9481766 . + . Note "right end: F38E11" CHROMOSOME_IV assembly_tag Clone 9482961 9482964 . + . Note "left end: C33A12" CHROMOSOME_IV assembly_tag Clone 9482961 9482964 . + . Note "left end: C33A12" CHROMOSOME_IV assembly_tag cosmid 9482961 9482966 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 9482961 9482964 . - . Note "Left: C33A12" CHROMOSOME_IV assembly_tag Finished 9483061 9483064 . + . Note "Right: " CHROMOSOME_IV assembly_tag compression 9483784 9483797 . - . CHROMOSOME_IV assembly_tag compression 9484339 9484366 . - . CHROMOSOME_IV assembly_tag compression 9484478 9484489 . - . CHROMOSOME_IV assembly_tag oligo 9484705 9484724 . + . Note "serial#=C33A12.7\ntemplate=xq50g1.s1 \nsequence=CTTACGGAATATGTCATTAG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9489360 9489377 . + . Note "serial#=C33A12.6\ntemplate=xq50e3.s1a \nsequence=CTATCCAATTTGCTTCAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9490024 9490041 . + . Note "serial#=C33A12.5\ntemplate=xp24c8.r1b \nsequence=TTCTGTCATGTCATACAC\nflags=\n" CHROMOSOME_IV assembly_tag compression 9490359 9490371 . - . CHROMOSOME_IV assembly_tag comment 9490643 9490652 . - . Note "mis track??" CHROMOSOME_IV assembly_tag compression 9490769 9490787 . - . CHROMOSOME_IV assembly_tag compression 9493193 9493199 . + . CHROMOSOME_IV assembly_tag oligo 9493964 9493983 . + . Note "serial#=C33A12.4\ntemplate=xp17f4.s1 \nsequence=CTGATATTGTTCATTGTGTC\nflags=\n" CHROMOSOME_IV assembly_tag compression 9494385 9494427 . - . CHROMOSOME_IV assembly_tag comment 9495021 9495039 . - . Note "?" CHROMOSOME_IV assembly_tag compression 9498123 9498136 . + . CHROMOSOME_IV assembly_tag oligo 9498266 9498283 . - . Note "serial#=C33A12.3\ntemplate=xp24d6.s1 \nsequence=GCTGAGTCTGAAAATATG\nflags=\n" CHROMOSOME_IV assembly_tag comment 9498406 9498459 . + . Note "mis track" CHROMOSOME_IV assembly_tag oligo 9501332 9501349 . + . Note "serial#=C33A12.2\ntemplate=xp17a5.s1a \nsequence=CTCGTTGGTAGTTATTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9503077 9503093 . + . Note "serial#=C33A12.1\ntemplate=xp25f8.s1 \nsequence=AGAAGACCTAGTGAAGC\nflags=\n" CHROMOSOME_IV assembly_tag comment 9503183 9503203 . - . Note "JOIN???????????" CHROMOSOME_IV assembly_tag compression 9505389 9505395 . - . CHROMOSOME_IV assembly_tag compression 9507351 9507364 . - . CHROMOSOME_IV assembly_tag Clone 9507738 9507741 . + . Note "left end: F56H11" CHROMOSOME_IV assembly_tag cosmid 9507738 9507742 . + . Note "vector: Lorist6" CHROMOSOME_IV assembly_tag cosmid 9507738 9507743 . + . Note "vector: Lorist6" CHROMOSOME_IV assembly_tag cosmid 9507738 9507742 . - . Note "vector: Lorist6" CHROMOSOME_IV assembly_tag compression 9511917 9511922 . - . CHROMOSOME_IV assembly_tag compression 9512402 9512431 . - . CHROMOSOME_IV assembly_tag compression 9513822 9513878 . - . CHROMOSOME_IV assembly_tag compression 9513982 9513988 . - . CHROMOSOME_IV assembly_tag comment 9514656 9514667 . - . Note "mis tracking" CHROMOSOME_IV assembly_tag compression 9515100 9515104 . - . CHROMOSOME_IV assembly_tag compression 9517975 9517989 . - . CHROMOSOME_IV assembly_tag compression 9519391 9519396 . - . CHROMOSOME_IV assembly_tag compression 9522853 9522858 . - . CHROMOSOME_IV assembly_tag comment 9523091 9523094 . - . Note "?" CHROMOSOME_IV assembly_tag compression 9523321 9523329 . + . CHROMOSOME_IV assembly_tag oligo 9523381 9523398 . - . Note "serial#=C33A12.9\ntemplate=xp24f6.s1 \nsequence=GGGAGTACAATCTGTTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9524223 9524240 . + . Note "serial#=C33A12.8\ntemplate=xq14e6.s1tb \nsequence=TTTATCAATAGAGCGAGG\nflags=\n" CHROMOSOME_IV assembly_tag compression 9524318 9524328 . + . CHROMOSOME_IV assembly_tag compression 9524642 9524647 . - . CHROMOSOME_IV assembly_tag compression 9524842 9524854 . + . CHROMOSOME_IV assembly_tag Finished 9525153 9525156 . + . Note "Left: F56H11" CHROMOSOME_IV assembly_tag Finished 9525254 9525257 . + . Note "Right: C33A12" CHROMOSOME_IV assembly_tag Clone 9525254 9525257 . - . Note "right end: C33A12" CHROMOSOME_IV assembly_tag Clone 9525254 9525257 . - . Note "right end: C33A12\n" CHROMOSOME_IV assembly_tag Clone 9544051 9544054 . + . Note "left end: T05A1\n" CHROMOSOME_IV assembly_tag Finished 9544051 9544054 . + . Note "Left: T05A1" CHROMOSOME_IV assembly_tag Clone 9544051 9544054 . + . Note "left end: BEGINNING OF T05A1" CHROMOSOME_IV assembly_tag Finished 9544151 9544154 . + . Note "Right: F56H11" CHROMOSOME_IV assembly_tag Clone 9575625 9575628 . + . Note "left end: BEGINNING OF F27C8 " CHROMOSOME_IV assembly_tag Finished 9575625 9575628 . + . Note "Left: F27C8" CHROMOSOME_IV assembly_tag Clone 9575625 9575628 . + . Note "left end: BEGINNING F27C8" CHROMOSOME_IV assembly_tag Finished 9575725 9575728 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9577871 9577874 . + . Note "right end: END T05A1" CHROMOSOME_IV assembly_tag Finished 9609355 9609358 . + . Note "Left: W09C2" CHROMOSOME_IV assembly_tag Clone 9609355 9609358 . + . Note "left end: BEGINNING OF W09C2" CHROMOSOME_IV assembly_tag Clone 9609355 9609358 . + . Note "left end: BEGINNING OF W09C2 ie NotI Site" CHROMOSOME_IV assembly_tag Finished 9609458 9609461 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 9612646 9612646 . + . Note "One clone has a C in this position. All other reads (9 total) have a T . " CHROMOSOME_IV assembly_tag Clone 9614211 9614214 . + . Note "right end: END OF F27C8" CHROMOSOME_IV assembly_tag annotation 9617472 9617475 . + . Note "A single clone had 6 As in this position compared with 4 As in all other reads (GAAAAAAG or GAAAAG)" CHROMOSOME_IV assembly_tag annotation 9630265 9630265 . + . Note "One clone has an A in this position. All other reads (6 total) have a G." CHROMOSOME_IV assembly_tag annotation 9638295 9638297 . + . Note "A single clone has only one T in this position. All other reads (6 total) have 3 Ts." CHROMOSOME_IV assembly_tag Clone 9639732 9639735 . + . Note "left end: BEGINNING F58G6" CHROMOSOME_IV assembly_tag Clone 9639732 9639735 . + . Note "left end: BEGINNING F58G6" CHROMOSOME_IV assembly_tag Finished 9639732 9639735 . + . Note "Left: F58G6" CHROMOSOME_IV assembly_tag Finished 9639832 9639835 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9648302 9648305 . + . Note "right end: END OF W09C2" CHROMOSOME_IV assembly_tag Clone 9671214 9671217 . + . Note "left end: left hand end of ZK1251" CHROMOSOME_IV assembly_tag Finished 9671214 9671217 . + . Note "Left: ZK1251" CHROMOSOME_IV assembly_tag Clone 9671214 9671217 . + . Note "left end: BEGINNING ZK1251" CHROMOSOME_IV assembly_tag Finished 9671314 9671317 . + . Note "Right: F58G6" CHROMOSOME_IV assembly_tag Clone 9678687 9678690 . + . Note "right end: right hand end of F58G6" CHROMOSOME_IV assembly_tag annotation 9683401 9683401 . + . Note "Most reads (6) show sequence TATT, but one clone has a base missing(TTT: no A)" CHROMOSOME_IV assembly_tag Clone 9700014 9700017 . + . Note "left end: K01H12" CHROMOSOME_IV assembly_tag Clone 9700014 9700017 . + . Note "left end: left hand end of K01H12" CHROMOSOME_IV assembly_tag Stolen 9700014 9700017 . + . Note "Read: " CHROMOSOME_IV assembly_tag Finished 9700014 9700017 . + . Note "Left: K01H12" CHROMOSOME_IV assembly_tag Finished 9700114 9700117 . + . Note "Right: ZK1251" CHROMOSOME_IV assembly_tag Clone 9711564 9711567 . + . Note "right end: right hand end of ZK1251" CHROMOSOME_IV assembly_tag Clone 9718835 9718838 . + . Note "left end: C28D4" CHROMOSOME_IV assembly_tag Finished 9718835 9718838 . + . Note "Left: C28D4" CHROMOSOME_IV assembly_tag Clone 9718835 9718838 . + . Note "left end: left hand end of C28D4" CHROMOSOME_IV assembly_tag Finished 9718935 9718938 . + . Note "Right: K01H12" CHROMOSOME_IV assembly_tag annotation 9732692 9732700 . + . Note "reads 597 & 1149 (same clone) have\nGAAAAAA, the other reads have GAAAAAAAA" CHROMOSOME_IV assembly_tag Clone 9742324 9742327 . + . Note "right end: right hand end of K01H12" CHROMOSOME_IV assembly_tag annotation 9745692 9745709 . + . Note "single clone\nconfirmed by restriction digest" CHROMOSOME_IV assembly_tag Finished 9759212 9759215 . + . Note "Left: H27C11 " CHROMOSOME_IV assembly_tag Finished 9759312 9759315 . + . Note "Right: C28D4" CHROMOSOME_IV assembly_tag Clone 9759312 9759315 . + . Note "right end: C28D4" CHROMOSOME_IV assembly_tag Clone 9759312 9759315 . + . Note "right end: Right hand end of C28D4" CHROMOSOME_IV assembly_tag annotation 9764874 9764932 . + . Note "First select a Feature -\n[x] Unsure\n[ ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here - qa67a - d are the \nsonication reads of puc qa25g7\n" CHROMOSOME_IV assembly_tag Clone 9765071 9765074 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 9765071 9765074 . + . Note "left end: T13F2" CHROMOSOME_IV assembly_tag Finished 9765071 9765074 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 9765171 9765174 . + . Note "Right: H27C11" CHROMOSOME_IV assembly_tag Clone 9803023 9803030 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9803023 9803030 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9803025 9803030 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9803127 9803130 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9810296 9810299 . + . Note "right end: Right end of T13F2" CHROMOSOME_IV assembly_tag annotation 9814557 9814566 . + . CHROMOSOME_IV assembly_tag annotation 9822899 9822902 . + . Note "only one strand with terms, terms show potential GC, using spacing I think the C is an artefact" CHROMOSOME_IV assembly_tag annotation 9827717 9827719 . + . Note "base substitution t for c, gone with t in consensus" CHROMOSOME_IV assembly_tag annotation 9830173 9830185 . + . Note "this is the only match found for this read but it differs at this point then the sequence becomes the same as the consensus again. Correct base count, other reads confirm." CHROMOSOME_IV assembly_tag Clone 9833667 9833670 . + . Note "left end: Left end of K07F5" CHROMOSOME_IV assembly_tag Finished 9833667 9833670 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9833667 9833670 . + . Note "left end: left end K07F5" CHROMOSOME_IV assembly_tag Finished 9833767 9833770 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9839221 9839226 . + . Note "right end: right end of W08D2" CHROMOSOME_IV assembly_tag annotation 9841753 9841755 . + . Note "compressed C, edited from one C to two." CHROMOSOME_IV assembly_tag annotation 9852892 9852893 . + . Note "mis-edit, corrected from 1 G to 2 Gs using Ward lab data from Arizona" CHROMOSOME_IV assembly_tag Finished 9877368 9877371 . + . Note "Left: F49C8" CHROMOSOME_IV assembly_tag Clone 9877465 9877468 . + . Note "right end: K07F5" CHROMOSOME_IV assembly_tag Finished 9877465 9877468 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9877465 9877468 . + . Note "right end: right end of K07F5" CHROMOSOME_IV assembly_tag Clone 9878645 9878648 . + . Note "left end: F32B6" CHROMOSOME_IV assembly_tag Clone 9878645 9878648 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 9878645 9878648 . + . Note "left end: F32B6" CHROMOSOME_IV assembly_tag Finished 9878645 9878648 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 9878645 9878648 . + . Note "Left: F32B6" CHROMOSOME_IV assembly_tag Clone 9878645 9878646 . - . Note "left end: F32B6" CHROMOSOME_IV assembly_tag Finished 9878742 9878745 . + . Note "Right: F49C8" CHROMOSOME_IV assembly_tag Clone 9905935 9905938 . + . Note "left end: Start of F25H8" CHROMOSOME_IV assembly_tag Clone 9905935 9905938 . + . Note "left end: f25h8" CHROMOSOME_IV assembly_tag Clone 9905935 9905938 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9905935 9905938 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9905935 9905938 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9906035 9906038 . + . Note "Right: F32B6" CHROMOSOME_IV assembly_tag Finished 9906035 9906038 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 9931924 9932033 . + . Note "No neg strand, so terminated pos. Reads labelled .o5 are terminators." CHROMOSOME_IV assembly_tag Finished 9938420 9938423 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9938420 9938423 . + . Note "left end: Start of T13H10." CHROMOSOME_IV assembly_tag Clone 9938420 9938423 . + . Note "left end: left end of T13H10" CHROMOSOME_IV assembly_tag Finished 9938520 9938523 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9945095 9945098 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 9945096 9945098 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 9968917 9968920 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9968917 9968920 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9968917 9968920 . + . Note "left end: left end of C47E12" CHROMOSOME_IV assembly_tag Clone 9968917 9968920 . + . Note "left end: Left end C47E12" CHROMOSOME_IV assembly_tag Finished 9969017 9969020 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9973891 9973894 . + . Note "right end: T13H10" CHROMOSOME_IV assembly_tag Finished 10006668 10006671 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10006668 10006671 . + . Note "left end: Left end F44D12" CHROMOSOME_IV assembly_tag Clone 10006668 10006671 . + . Note "left end: F44D12" CHROMOSOME_IV assembly_tag Finished 10006768 10006771 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10013417 10013420 . + . Note "right end: " CHROMOSOME_IV assembly_tag annotation 10018298 10018311 . + . Note "Neg reads call 14 As, pos reads call 13 As. I've edited to the maximum number." CHROMOSOME_IV assembly_tag Finished 10038417 10038420 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10038417 10038420 . + . Note "left end: T04B2" CHROMOSOME_IV assembly_tag Clone 10038417 10038420 . + . Note "left end: Left end of T04B2" CHROMOSOME_IV assembly_tag Finished 10038517 10038520 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10044681 10044684 . + . Note "right end: Right end of F44D12" CHROMOSOME_IV assembly_tag Finished 10058848 10058851 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10058848 10058851 . + . Note "left end: Left end W01B6" CHROMOSOME_IV assembly_tag Clone 10058848 10058851 . + . Note "left end: Left end of W01B6" CHROMOSOME_IV assembly_tag Finished 10058948 10058951 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 10066335 10066335 . + . Note "This base could be C. Some reads clearly show C, but all reads from overlapping cosmid show A, so I've edited it to A." CHROMOSOME_IV assembly_tag Clone 10075506 10075509 . + . Note "right end: Right end of T04B2" CHROMOSOME_IV assembly_tag Clone 10086866 10086869 . + . Note "left end: left end of C04G2" CHROMOSOME_IV assembly_tag Clone 10086866 10086869 . + . Note "left end: left end of C04G2" CHROMOSOME_IV assembly_tag Finished 10086866 10086869 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 10086966 10086969 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10094127 10094134 . + . Note "right end: W01B6" CHROMOSOME_IV assembly_tag Clone 10094127 10094134 . + . Note "right end: " CHROMOSOME_IV assembly_tag Masked 10095421 10095423 . + . Note "(Autoedit): " CHROMOSOME_IV assembly_tag Clone 10120592 10120595 . + . Note "left end: left end K08F4" CHROMOSOME_IV assembly_tag Clone 10120592 10120595 . + . Note "left end: left end K08F4" CHROMOSOME_IV assembly_tag Finished 10120592 10120595 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 10120692 10120695 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10130388 10130391 . + . Note "right end: right end C04G2" CHROMOSOME_IV assembly_tag annotation 10144086 10144087 . + . Note "originally ABI base-called 3 Ts. There are only 2 T peaks in trace, confirmed with data from Ward lab Arizona" CHROMOSOME_IV assembly_tag Finished 10145921 10145924 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10145921 10145924 . + . Note "left end: left end t14g10" CHROMOSOME_IV assembly_tag Clone 10145921 10145924 . + . Note "left end: left end t14g10" CHROMOSOME_IV assembly_tag Finished 10146021 10146024 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10158257 10158260 . + . Note "right end: right end of K08F4" CHROMOSOME_IV assembly_tag Clone 10168737 10168740 . + . Note "left end: K04D7" CHROMOSOME_IV assembly_tag Finished 10168737 10168740 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10168737 10168740 . + . Note "left end: K04D7" CHROMOSOME_IV assembly_tag Finished 10168837 10168840 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10184467 10184470 . + . Note "right end: t14g10" CHROMOSOME_IV assembly_tag Finished 10207432 10207435 . + . Note "Left: T17B5" CHROMOSOME_IV assembly_tag Clone 10207532 10207535 . + . Note "right end: K04D7" CHROMOSOME_IV assembly_tag Clone 10207532 10207535 . + . Note "right end: K04D7" CHROMOSOME_IV assembly_tag Finished 10207532 10207535 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 10211703 10211706 . + . Note "Left: C24F3" CHROMOSOME_IV assembly_tag Clone 10211703 10211706 . + . Note "left end: C24F3" CHROMOSOME_IV assembly_tag Clone 10211704 10211706 . + . Note "left end: C24F3" CHROMOSOME_IV assembly_tag Finished 10211803 10211806 . + . Note "Right: T17B5" CHROMOSOME_IV assembly_tag Finished 10226143 10226146 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10226143 10226146 . + . Note "left end: poss. l or r end" CHROMOSOME_IV assembly_tag Clone 10226143 10226146 . + . Note "left end: F01G10" CHROMOSOME_IV assembly_tag Finished 10226243 10226246 . + . Note "Right: C24F3" CHROMOSOME_IV assembly_tag annotation 10261826 10264913 . + . Note "Restriction Digest indicates that\nthere are approximately 800 bases\nmissing from this tandem repeat region" CHROMOSOME_IV assembly_tag Finished 10267053 10267056 . + . Note "Left: Y43C5A" CHROMOSOME_IV assembly_tag Finished 10267153 10267156 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10267153 10267156 . - . Note "right end: F01G10" CHROMOSOME_IV assembly_tag Clone 10267153 10267156 . - . Note "right end: r end F01G10" CHROMOSOME_IV assembly_tag Clone 10284574 10284579 . + . Note "left end: R09E10" CHROMOSOME_IV assembly_tag Finished 10284574 10284579 . - . Note "Left: R09E10" CHROMOSOME_IV assembly_tag Clone 10284574 10284579 . - . Note "left end: R09E10" CHROMOSOME_IV assembly_tag Finished 10284675 10284678 . - . Note "Right: Y43C5A" CHROMOSOME_IV assembly_tag annotation 10300825 10300828 . + . Note "end ot k11e8" CHROMOSOME_IV assembly_tag Finished 10322123 10322128 . - . Note "Left: K11E8" CHROMOSOME_IV assembly_tag Finished 10322223 10322228 . - . Note "Right: R09E10" CHROMOSOME_IV assembly_tag Clone 10322223 10322228 . - . Note "right end: R09E10" CHROMOSOME_IV assembly_tag Finished 10339852 10339855 . + . Note "Left: Y43C5B" CHROMOSOME_IV assembly_tag Clone 10339952 10339955 . - . Note "right end: K11E8" CHROMOSOME_IV assembly_tag Finished 10339952 10339955 . - . Note "Right: K11E8" CHROMOSOME_IV assembly_tag Clone 10339952 10339955 . - . Note "right end: K11E8" CHROMOSOME_IV assembly_tag Clone 10354208 10354213 . + . Note "left end: R11A8" CHROMOSOME_IV assembly_tag Finished 10354208 10354213 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10354208 10354213 . + . Note "left end: R11A8" CHROMOSOME_IV assembly_tag Finished 10354314 10354317 . - . Note "Right: Y43C5B" CHROMOSOME_IV assembly_tag Finished 10381434 10381439 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10381434 10381439 . + . Note "left end: left end of r10h10" CHROMOSOME_IV assembly_tag Clone 10381434 10381439 . + . Note "left end: R10H10" CHROMOSOME_IV assembly_tag Finished 10381534 10381539 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10392865 10392871 . + . Note "right end: right hand end of r11a8" CHROMOSOME_IV assembly_tag Clone 10415933 10415936 . + . Note "left end: left end of F13B12 right hand o/l" CHROMOSOME_IV assembly_tag Finished 10415933 10415936 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10415933 10415936 . + . Note "left end: left end f13b12" CHROMOSOME_IV assembly_tag Finished 10416484 10416489 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10416484 10416489 . + . Note "right end: right end of R10H10" CHROMOSOME_IV assembly_tag Clone 10416484 10416489 . + . Note "right end: right end R10H10" CHROMOSOME_IV assembly_tag annotation 10425309 10425310 . + . Note "compressed 2 Gs on -ve strand, +ve clone and terminator extended to confirm" CHROMOSOME_IV assembly_tag Clone 10451832 10451835 . + . Note "left end: left end of F01D4" CHROMOSOME_IV assembly_tag Clone 10451832 10451835 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 10451832 10451835 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 10451932 10451935 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10454797 10454800 . + . Note "right end: " CHROMOSOME_IV assembly_tag Finished 10489573 10489576 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10489573 10489576 . - . Note "left end: lh end C02F4" CHROMOSOME_IV assembly_tag Clone 10489573 10489576 . - . Note "left end: lh end C02F4" CHROMOSOME_IV assembly_tag Finished 10489673 10489676 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10491415 10491418 . + . Note "right end: F01D4\n" CHROMOSOME_IV assembly_tag Clone 10528411 10528414 . + . Note "left end: lh end T07G12" CHROMOSOME_IV assembly_tag Finished 10528411 10528414 . + . Note "Left: T07G12\n" CHROMOSOME_IV assembly_tag Clone 10528411 10528414 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 10528411 10528414 . + . Note "left end: T07G12" CHROMOSOME_IV assembly_tag Finished 10528511 10528514 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10534557 10534560 . + . Note "right end: C02F4" CHROMOSOME_IV assembly_tag annotation 10551958 10551994 . + . Note "Single clone across bases 23548 to \n23584 in the inverted repeat region.\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag Clone 10564827 10564830 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 10564827 10564830 . + . Note "left end: C43F9\n" CHROMOSOME_IV assembly_tag Clone 10564827 10564830 . + . Note "left end: C43F9" CHROMOSOME_IV assembly_tag Finished 10564827 10564830 . + . Note "Left: C43F9" CHROMOSOME_IV assembly_tag Finished 10564927 10564930 . + . Note "Right: T07G12" CHROMOSOME_IV assembly_tag Clone 10567485 10567488 . + . Note "right end: T07G12" CHROMOSOME_IV assembly_tag Finished 10597596 10597601 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10597596 10597601 . + . Note "left end: R09H10" CHROMOSOME_IV assembly_tag Clone 10597596 10597601 . + . Note "left end: T07G12" CHROMOSOME_IV assembly_tag Finished 10597696 10597699 . - . Note "Right: C43F9" CHROMOSOME_IV assembly_tag Finished 10626690 10626693 . + . Note "Left: F56C4" CHROMOSOME_IV assembly_tag Clone 10626690 10626693 . + . Note "left end: F56C4" CHROMOSOME_IV assembly_tag Clone 10626690 10626693 . + . Note "left end: F56C4" CHROMOSOME_IV assembly_tag Clone 10631873 10631878 . + . Note "right end: R09H10" CHROMOSOME_IV assembly_tag Finished 10631873 10631878 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10650671 10650674 . + . Note "left end: Start of K08C7" CHROMOSOME_IV assembly_tag Finished 10650671 10650674 . + . Note "Left: K08C7" CHROMOSOME_IV assembly_tag Clone 10650671 10650674 . + . Note "left end: K08C7" CHROMOSOME_IV assembly_tag Finished 10650771 10650774 . + . Note "Right: F56C4" CHROMOSOME_IV assembly_tag Clone 10665038 10665041 . + . Note "right end: End of F56C4" CHROMOSOME_IV assembly_tag Finished 10684703 10684708 . + . Note "Left: R102" CHROMOSOME_IV assembly_tag Clone 10684703 10684708 . + . Note "left end: Start of R102" CHROMOSOME_IV assembly_tag Clone 10684703 10684708 . + . Note "left end: Start of R102" CHROMOSOME_IV assembly_tag Finished 10684805 10684808 . + . Note "Right: K08C7" CHROMOSOME_IV assembly_tag Clone 10689945 10689948 . + . Note "right end: End of K08C7" CHROMOSOME_IV assembly_tag Finished 10718778 10718783 . + . Note "Left: ZC168" CHROMOSOME_IV assembly_tag Clone 10718778 10718783 . + . Note "left end: Start of ZC168" CHROMOSOME_IV assembly_tag Clone 10718778 10718783 . + . Note "left end: Start of ZC168" CHROMOSOME_IV assembly_tag Finished 10718890 10718893 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10724314 10724319 . + . Note "right end: End of R102" CHROMOSOME_IV assembly_tag Clone 10744981 10744984 . + . Note "left end: Start of T25B9" CHROMOSOME_IV assembly_tag Finished 10744981 10744984 . + . Note "Left: T25B9" CHROMOSOME_IV assembly_tag Clone 10744981 10744984 . + . Note "left end: T25B9" CHROMOSOME_IV assembly_tag Finished 10745081 10745084 . + . Note "Right: ZC168" CHROMOSOME_IV assembly_tag Clone 10757949 10757954 . + . Note "right end: ZC168" CHROMOSOME_IV assembly_tag Finished 10771101 10771104 . + . Note "Left: C06G8" CHROMOSOME_IV assembly_tag Clone 10771101 10771104 . + . Note "left end: C06G8" CHROMOSOME_IV assembly_tag Clone 10771101 10771104 . + . Note "left end: C06G8" CHROMOSOME_IV assembly_tag Finished 10771201 10771204 . + . Note "Right: T25B9" CHROMOSOME_IV assembly_tag Clone 10779745 10779748 . + . Note "right end: End of T25B9" CHROMOSOME_IV assembly_tag Finished 10802138 10802143 . + . Note "Left: R13" CHROMOSOME_IV assembly_tag Clone 10802138 10802143 . + . Note "left end: R13" CHROMOSOME_IV assembly_tag Clone 10802138 10802143 . + . Note "left end: R13" CHROMOSOME_IV assembly_tag Finished 10802240 10802243 . + . Note "Right: C06G8" CHROMOSOME_IV assembly_tag Clone 10813429 10813432 . + . Note "right end: C06G8" CHROMOSOME_IV assembly_tag Finished 10836209 10836212 . + . Note "Left: T11G6" CHROMOSOME_IV assembly_tag Clone 10836209 10836212 . + . Note "left end: T11G6" CHROMOSOME_IV assembly_tag Clone 10836209 10836212 . + . Note "left end: T11G6" CHROMOSOME_IV assembly_tag Finished 10836309 10836312 . + . Note "Right: R13" CHROMOSOME_IV assembly_tag annotation 10843299 10843358 . + . Note "Region of TA dinucleotide repeat. Some M13 clones vary in length of repeat. The clone with the highest number of repeats is given." CHROMOSOME_IV assembly_tag Clone 10843845 10843850 . + . Note "right end: R13" CHROMOSOME_IV assembly_tag Finished 10865566 10865569 . + . Note "Left: F13E9" CHROMOSOME_IV assembly_tag Clone 10865566 10865569 . + . Note "left end: F13E9" CHROMOSOME_IV assembly_tag Clone 10865566 10865569 . + . Note "left end: F13E9" CHROMOSOME_IV assembly_tag Finished 10865666 10865669 . + . Note "Right: T11G6" CHROMOSOME_IV assembly_tag Clone 10874895 10874898 . + . Note "right end: T11G6" CHROMOSOME_IV assembly_tag Finished 10899536 10899539 . + . Note "Left: ZK596" CHROMOSOME_IV assembly_tag Clone 10899536 10899539 . + . Note "left end: ZK596" CHROMOSOME_IV assembly_tag Clone 10899536 10899539 . + . Note "left end: ZK596" CHROMOSOME_IV assembly_tag Finished 10899636 10899639 . + . Note "Right: F13E9" CHROMOSOME_IV assembly_tag Clone 10907644 10907647 . + . Note "right end: F13E9" CHROMOSOME_IV assembly_tag Finished 10909771 10909774 . + . Note "Left: ZK593" CHROMOSOME_IV assembly_tag Clone 10909771 10909774 . + . Note "left end: ZK593" CHROMOSOME_IV assembly_tag Clone 10909771 10909774 . + . Note "left end: ZK593" CHROMOSOME_IV assembly_tag Finished 10909871 10909874 . + . Note "Right: ZK596" CHROMOSOME_IV assembly_tag Clone 10932806 10932809 . + . Note "right end: ZK596" CHROMOSOME_IV assembly_tag annotation 10938588 10938602 . + . Note "There is some dicrepancy between M13 clones across this region. 3 clones have 9 As and 6 Ts and a further 4 clones have 10 As and 5 Ts (in both cases distributed over both strands and reproducible after terminator chemistry). " CHROMOSOME_IV assembly_tag Finished 10943169 10943172 . + . Note "Left: Y69E1A" CHROMOSOME_IV assembly_tag Clone 10943265 10943268 . + . Note "right end: ZK593" CHROMOSOME_IV assembly_tag Finished 10943265 10943268 . + . Note "Right: ZK593" CHROMOSOME_IV assembly_tag Clone 10943265 10943268 . - . Note "right end: ZK593" CHROMOSOME_IV assembly_tag annotation 10943407 10946254 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[x] OtherAdd a comment here -Inverted repeat section covering approximately 2.8Kb containing two areas of tandem repeat of unknown size. Due to the nature of the tandem repeats orientation of the internal loop may be incorrect." CHROMOSOME_IV assembly_tag annotation 10943705 10943740 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown, contained within a large inverted repeat.Approximately 0.7Kb of a ATCTGATCCTTAAGCTCCGAAGGATCAGAAGGGTACCTCCTGGTG motif assembled with some base differences and one forced join. Data suggests that the tandem repeat should cover a larger area." CHROMOSOME_IV assembly_tag annotation 10946018 10946040 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown, contained within a large inverted repeat.Approximately 0.6Kb of a TGATCCTTCGGAGCTTAAGGATCAGATCACCAGGAGGTACCCTTC motif assembled with some base differences and one forced join. Data suggests that the tandem repeat should cover a larger area." CHROMOSOME_IV assembly_tag annotation 10977175 10977407 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nSequence derived from a single sonicated PUC clone (uq02e3)" CHROMOSOME_IV assembly_tag Clone 10980123 10980128 . + . Note "left end: Y43E12" CHROMOSOME_IV assembly_tag Clone 10980123 10980128 . + . Note "left end: Y43E12" CHROMOSOME_IV assembly_tag Finished 10980123 10980128 . + . Note "Left: Y43E12A" CHROMOSOME_IV assembly_tag Finished 10980223 10980226 . - . Note "Right: Y69E1A" CHROMOSOME_IV assembly_tag Clone 10983724 10983729 . - . Note "right end: Y69E1" CHROMOSOME_IV assembly_tag Finished 10990974 10990977 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10990974 10990977 . + . Note "left end: F13H10" CHROMOSOME_IV assembly_tag Clone 10990974 10990977 . + . Note "left end: Clone left end of F13H10" CHROMOSOME_IV assembly_tag Finished 10991076 10991079 . - . Note "Right: Y43E12A" CHROMOSOME_IV assembly_tag annotation 11002685 11002694 . + . Note "Single clone PCR product sized over this region to confirm ." CHROMOSOME_IV assembly_tag Clone 11023174 11023177 . + . Note "left end: F36H1" CHROMOSOME_IV assembly_tag Finished 11023174 11023177 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11023174 11023177 . + . Note "left end: Clone left end of F36H1" CHROMOSOME_IV assembly_tag Finished 11023286 11023293 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11025164 11025167 . + . Note "right end: F13H10" CHROMOSOME_IV assembly_tag annotation 11033559 11036079 . + . Note "multiple tandem copies of 79mer. Restriction data from cosmid DNA suggests up to 400bp missing from this region. Because of the repetitive nature of this sequence base accuracy cannot be guarenteed. The size of this region has not been predicted using non-cloned genomic DNA." CHROMOSOME_IV assembly_tag Finished 11061682 11061685 . + . Note "Left: Y5F2A" CHROMOSOME_IV assembly_tag Finished 11061778 11061781 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11061778 11061781 . + . Note "right end: F36H1" CHROMOSOME_IV assembly_tag Clone 11061778 11061781 . - . Note "right end: F36H1" CHROMOSOME_IV assembly_tag annotation 11070925 11072371 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 1.4Kb of AGACTACCT motif assembled in with some base differences and 1 forced join." CHROMOSOME_IV assembly_tag annotation 11072372 11075920 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[X] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 3.5Kb of TTATGGAAAAGTGGCTCTAGAGCCACTAGAAATACCAGT motif assembled in with some base differences, 2 forced joins and 1 single clone area." CHROMOSOME_IV assembly_tag Clone 11079974 11079977 . + . Note "left end: M7" CHROMOSOME_IV assembly_tag Finished 11079974 11079977 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11079974 11079977 . + . Note "left end: Left Hand End M7" CHROMOSOME_IV assembly_tag Finished 11080075 11080078 . - . Note "Right: Y5F2A" CHROMOSOME_IV assembly_tag annotation 11089379 11089386 . + . Note "One read says 7 T's possibly a point mutation. Edited to largest number." CHROMOSOME_IV assembly_tag Clone 11103331 11103334 . + . Note "left end: Left Hand End T05E11" CHROMOSOME_IV assembly_tag Finished 11103331 11103334 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11103331 11103334 . + . Note "left end: T05E11" CHROMOSOME_IV assembly_tag Finished 11103438 11103443 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11120934 11120937 . + . Note "right end: M7" CHROMOSOME_IV assembly_tag Clone 11127774 11127777 . + . Note "left end: F01G4" CHROMOSOME_IV assembly_tag Finished 11127774 11127777 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11127774 11127777 . + . Note "left end: F01G4" CHROMOSOME_IV assembly_tag Finished 11127879 11127884 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11144896 11144899 . + . Note "right end: T05E11" CHROMOSOME_IV assembly_tag Clone 11148558 11148561 . + . Note "left end: C08F8" CHROMOSOME_IV assembly_tag Clone 11148558 11148561 . + . Note "left end: C08F8" CHROMOSOME_IV assembly_tag Finished 11148558 11148561 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11148658 11148664 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11162551 11162554 . + . Note "right end: F01G4" CHROMOSOME_IV assembly_tag Finished 11181128 11181133 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11181128 11181133 . + . Note "left end: R07H5" CHROMOSOME_IV assembly_tag Clone 11181128 11181133 . + . Note "left end: R07H5" CHROMOSOME_IV assembly_tag Finished 11181227 11181234 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11190715 11190718 . + . Note "right end: C08F8" CHROMOSOME_IV assembly_tag Clone 11214825 11214828 . + . Note "left end: C29F4" CHROMOSOME_IV assembly_tag Clone 11214825 11214828 . + . Note "left end: C29F4" CHROMOSOME_IV assembly_tag Finished 11214825 11214828 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11214926 11214929 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11215817 11215842 . + . Note "C29F4 reads 26 or 27 Ts. R07H5 seems to read 25" CHROMOSOME_IV assembly_tag Clone 11220931 11220936 . + . Note "right end: Ro7h5" CHROMOSOME_IV assembly_tag Clone 11232121 11232124 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 11232121 11232124 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11232121 11232124 . + . Note "left end: C05C12" CHROMOSOME_IV assembly_tag Finished 11232220 11232226 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11255622 11255625 . + . Note "right end: C29F4" CHROMOSOME_IV assembly_tag Clone 11261109 11261112 . + . Note "left end: F54D1" CHROMOSOME_IV assembly_tag Clone 11261109 11261112 . + . Note "left end: F54D1" CHROMOSOME_IV assembly_tag Finished 11261109 11261112 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11261212 11261216 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11276214 11276217 . - . Note "right end: C05C12" CHROMOSOME_IV assembly_tag Clone 11294267 11294270 . + . Note "left end: B0035" CHROMOSOME_IV assembly_tag Clone 11294267 11294270 . + . Note "left end: B0035" CHROMOSOME_IV assembly_tag Finished 11294267 11294270 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11294371 11294374 . - . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11297889 11297891 . + . Note "point mutation wn30g5.s1/.s1t" CHROMOSOME_IV assembly_tag Clone 11299187 11299190 . + . Note "right end: F54D1" CHROMOSOME_IV assembly_tag Clone 11333636 11333639 . + . Note "left end: F54E12" CHROMOSOME_IV assembly_tag Finished 11333636 11333639 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11333640 11333644 . + . Note "left end: F52E11" CHROMOSOME_IV assembly_tag Finished 11333745 11333749 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11339889 11339889 . + . Note "..some reads read G\nand some reads read A.\nDifferent species??\nMost read G therefore changed to G." CHROMOSOME_IV assembly_tag annotation 11345602 11345678 . + . Note "Single clone area.\nTerminator runs accross area and\nall the bases are clear." CHROMOSOME_IV assembly_tag Clone 11347409 11347412 . + . Note "left end: T01G1" CHROMOSOME_IV assembly_tag Clone 11347409 11347412 . + . Note "left end: T01G1" CHROMOSOME_IV assembly_tag Finished 11347409 11347412 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11347509 11347512 . - . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11362667 11362669 . - . Note "single clone area. base accuracy \ncannot be guaranteed." CHROMOSOME_IV assembly_tag Clone 11371279 11371282 . + . Note "left end: H02I12" CHROMOSOME_IV assembly_tag Finished 11371279 11371282 . + . Note "Left: H02I12" CHROMOSOME_IV assembly_tag Clone 11371279 11371282 . + . Note "left end: H02I12" CHROMOSOME_IV assembly_tag Clone 11371279 11371282 . - . Note "right end: F54E12" CHROMOSOME_IV assembly_tag Finished 11371378 11371383 . - . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11383620 11383623 . - . Note "right end: T01G1 No RHE." CHROMOSOME_IV assembly_tag Finished 11405362 11405365 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11405362 11405365 . + . Note "left end: Clone left end of F22B3" CHROMOSOME_IV assembly_tag Finished 11405362 11405365 . - . Note "Right: H02I12" CHROMOSOME_IV assembly_tag Clone 11405362 11405365 . - . Note "right end: H02I12" CHROMOSOME_IV assembly_tag Clone 11435729 11435732 . + . Note "left end: Clone left end of C10C6" CHROMOSOME_IV assembly_tag Finished 11435729 11435732 . - . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11435729 11435732 . - . Note "left end: C10C6" CHROMOSOME_IV assembly_tag Finished 11435835 11435841 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11444053 11444056 . + . Note "right end: F22B3" CHROMOSOME_IV assembly_tag comment 11475215 11475215 . + . Note "3G > 4G jes 30-12-01" CHROMOSOME_IV assembly_tag comment 11475238 11475246 . + . Note "?running term to confirm" CHROMOSOME_IV assembly_tag Finished 11479418 11479421 . + . Note "Left: H21P03" CHROMOSOME_IV assembly_tag Finished 11479514 11479517 . - . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11479514 11479517 . - . Note "right end: C10C6" CHROMOSOME_IV assembly_tag Clone 11479514 11479517 . - . Note "right end: C10C6" CHROMOSOME_IV assembly_tag cosmid 11504911 11504914 . + . Note "vector: pjb8" CHROMOSOME_IV assembly_tag Finished 11504911 11504914 . + . Note "Left: M04B2" CHROMOSOME_IV assembly_tag Clone 11504911 11504914 . + . Note "left end: M04B2" CHROMOSOME_IV assembly_tag Clone 11504911 11504914 . + . Note "left end: M04B2" CHROMOSOME_IV assembly_tag cosmid 11504911 11504914 . - . Note "vector: pjb8" CHROMOSOME_IV assembly_tag cosmid 11504911 11504916 . - . Note "vector: " CHROMOSOME_IV assembly_tag Finished 11505007 11505010 . - . Note "Right: H21P03" CHROMOSOME_IV assembly_tag Finished 11543879 11543882 . + . Note "Left: F12F6" CHROMOSOME_IV assembly_tag Clone 11543879 11543882 . + . Note "left end: F12F6" CHROMOSOME_IV assembly_tag Clone 11543879 11543882 . + . Note "left end: F12F6" CHROMOSOME_IV assembly_tag compression 11544330 11544330 . + . CHROMOSOME_IV assembly_tag resolved 11545031 11545035 . - . Note "compression: " CHROMOSOME_IV assembly_tag compression 11545043 11545043 . + . CHROMOSOME_IV assembly_tag compression 11545793 11545797 . - . CHROMOSOME_IV assembly_tag compression 11545802 11545802 . + . CHROMOSOME_IV assembly_tag compression 11546010 11546015 . - . CHROMOSOME_IV assembly_tag compression 11546019 11546026 . - . CHROMOSOME_IV assembly_tag comment 11547165 11547480 . + . Note "?really wn57a3" CHROMOSOME_IV assembly_tag comment 11547346 11547618 . + . Note "?really wn55e6" CHROMOSOME_IV assembly_tag comment 11547764 11547764 . + . Note "?" CHROMOSOME_IV assembly_tag Finished 11548281 11548284 . - . Note "Right: M04B2" CHROMOSOME_IV assembly_tag Clone 11548281 11548284 . - . Note "right end: M04B2" CHROMOSOME_IV assembly_tag annotation 11560557 11560905 . + . Note "this region is covered by cosmid PCRs\nonly" CHROMOSOME_IV assembly_tag annotation 11560611 11560615 . + . Note "could be only 4 As - cosmid PCR only \nhere." CHROMOSOME_IV assembly_tag annotation 11560705 11560705 . + . Note "could be a T - only cosmid PCR here" CHROMOSOME_IV assembly_tag Clone 11564975 11564978 . + . Note "left end: F40F11" CHROMOSOME_IV assembly_tag Finished 11587784 11587787 . + . Note "Left: F40F11" CHROMOSOME_IV assembly_tag Finished 11587884 11587887 . - . Note "Right: F12F6" CHROMOSOME_IV assembly_tag Clone 11587884 11587887 . - . Note "right end: F12F6" CHROMOSOME_IV assembly_tag Clone 11587884 11587887 . - . Note "left end: F12F6" CHROMOSOME_IV assembly_tag Clone 11603901 11603904 . - . Note "right end: F40F11" CHROMOSOME_IV assembly_tag Finished 11603901 11603904 . - . Note "Right: F40F11" CHROMOSOME_IV assembly_tag Clone 11618926 11618929 . + . Note "left end: F58B3 " CHROMOSOME_IV assembly_tag Finished 11618926 11618929 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11640761 11640764 . + . Note "left end: ZK809" CHROMOSOME_IV assembly_tag Finished 11640761 11640764 . + . Note "Left: ZK809" CHROMOSOME_IV assembly_tag Clone 11640761 11640764 . + . Note "left end: ZK809" CHROMOSOME_IV assembly_tag Finished 11640861 11640873 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11666221 11666224 . + . Note "left end: ZK792" CHROMOSOME_IV assembly_tag Clone 11666221 11666224 . + . Note "left end: ZK792" CHROMOSOME_IV assembly_tag Finished 11666221 11666224 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11666317 11666320 . + . Note "Right: ZK809" CHROMOSOME_IV assembly_tag Clone 11681338 11681341 . + . Note "right end: ZK809" CHROMOSOME_IV assembly_tag Finished 11696384 11696387 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11696384 11696387 . + . Note "left end: Left Hand End T22B3" CHROMOSOME_IV assembly_tag Clone 11696384 11696387 . + . Note "left end: T22B3" CHROMOSOME_IV assembly_tag Finished 11696490 11696495 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11703591 11703594 . + . Note "right end: Right Hand End ZK792" CHROMOSOME_IV assembly_tag Finished 11706526 11706529 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11706526 11706529 . + . Note "left end: Left Hand End K01A6" CHROMOSOME_IV assembly_tag Clone 11706526 11706529 . + . Note "left end: Clone left end of K01A6" CHROMOSOME_IV assembly_tag Finished 11706629 11706634 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11736910 11736913 . + . Note "right end: Clone right end of T22B3" CHROMOSOME_IV assembly_tag Clone 11744879 11744882 . + . Note "left end: Left Hand End T12A7" CHROMOSOME_IV assembly_tag Clone 11744879 11744882 . + . Note "left end: Clone left end of T12A7" CHROMOSOME_IV assembly_tag Finished 11744879 11744882 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11744981 11744988 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11746259 11746262 . + . Note "right end: Right Hand End K01A6" CHROMOSOME_IV assembly_tag Finished 11783995 11783999 . + . Note "Left: H01G02" CHROMOSOME_IV assembly_tag Finished 11784095 11784098 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11784095 11784098 . + . Note "right end: Right Hand End T12A7" CHROMOSOME_IV assembly_tag Clone 11784095 11784098 . + . Note "right end: T12A7" CHROMOSOME_IV assembly_tag Clone 11784095 11784098 . + . Note "right end: " CHROMOSOME_IV assembly_tag annotation 11791603 11791673 . + . Note "single clone area - base accuracy \ncannot be guarenteed" CHROMOSOME_IV assembly_tag annotation 11791705 11791705 . + . Note "this base could be A or T - fosmid\nPCR is unclear." CHROMOSOME_IV assembly_tag Clone 11807801 11807804 . + . Note "left end: M117" CHROMOSOME_IV assembly_tag Clone 11807801 11807804 . + . Note "left end: M117" CHROMOSOME_IV assembly_tag Finished 11807801 11807804 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11807904 11807909 . - . Note "Right: H01G02" CHROMOSOME_IV assembly_tag Finished 11835708 11835711 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11835708 11835711 . + . Note "left end: F38H4" CHROMOSOME_IV assembly_tag Clone 11835708 11835711 . + . Note "left end: F38H4" CHROMOSOME_IV assembly_tag Finished 11835810 11835814 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11847477 11847480 . + . Note "right end: M117" CHROMOSOME_IV assembly_tag Clone 11863393 11863396 . + . Note "left end: C29E6" CHROMOSOME_IV assembly_tag Finished 11863393 11863396 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11863393 11863396 . + . Note "left end: C29E6" CHROMOSOME_IV assembly_tag Finished 11863513 11863516 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11872757 11872760 . + . Note "right end: F38H4" CHROMOSOME_IV assembly_tag annotation 11887699 11887746 . + . Note "Sequence taken from only a single clone over this region. An ECOR1 digest across this region produces a fragment size to suggest the assembly of this cosmid is correct" CHROMOSOME_IV assembly_tag Finished 11907903 11907906 . + . Note "Left: VZK822l" CHROMOSOME_IV assembly_tag Clone 11908003 11908006 . + . Note "right end: C29E6" CHROMOSOME_IV assembly_tag Finished 11908003 11908006 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11908003 11908006 . - . Note "right end: C29E6" CHROMOSOME_IV assembly_tag annotation 11911426 11911434 . + . Note "uncertain number of A's, edited to the\nlongest run with several representatives." CHROMOSOME_IV assembly_tag annotation 11912422 11912431 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_IV assembly_tag annotation 11914928 11914936 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_IV assembly_tag Finished 11915818 11915821 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11915818 11915821 . + . Note "left end: ZK822" CHROMOSOME_IV assembly_tag Clone 11915818 11915821 . + . Note "left end: ZK822" CHROMOSOME_IV assembly_tag Finished 11915917 11915920 . - . Note "Right: VZK822l" CHROMOSOME_IV assembly_tag repeat 11934830 11934859 . + . Note "Repeats with contig wp19e5.s1t, offset 41" CHROMOSOME_IV assembly_tag repeat 11934861 11934899 . + . Note "Repeats with contig wp19e5.s1t, offset 1" CHROMOSOME_IV assembly_tag Finished 11941677 11941680 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11941677 11941680 . + . Note "left end: ZK829" CHROMOSOME_IV assembly_tag Clone 11941677 11941680 . + . Note "left end: ZK829" CHROMOSOME_IV assembly_tag Finished 11941777 11941787 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11949482 11949485 . + . Note "right end: ZK822" CHROMOSOME_IV assembly_tag Clone 11974102 11974105 . + . Note "left end: ZK617" CHROMOSOME_IV assembly_tag Finished 11974102 11974105 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11974102 11974105 . + . Note "left end: ZK617" CHROMOSOME_IV assembly_tag Finished 11974202 11974214 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11977726 11977729 . + . Note "right end: ZK829" CHROMOSOME_IV assembly_tag Finished 12019232 12019235 . + . Note "Left: Y64F11A" CHROMOSOME_IV assembly_tag Clone 12019328 12019331 . + . Note "right end: ZK617" CHROMOSOME_IV assembly_tag Finished 12019328 12019331 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12019328 12019331 . + . Note "right end: ZK617" CHROMOSOME_IV assembly_tag annotation 12022547 12024902 . + . CHROMOSOME_IV assembly_tag Finished 12024803 12024806 . + . Note "Left: Y40D7A" CHROMOSOME_IV assembly_tag Clone 12024803 12024808 . + . Note "left end: Y40D7" CHROMOSOME_IV assembly_tag Clone 12024803 12024808 . + . Note "left end: Y40D7" CHROMOSOME_IV assembly_tag annotation 12024803 12025441 . + . Note "Overlap with Y64F11 consists entirely \nof a 32bp tandem repeat sequence.\nWe are unable to tell whether there are\nany copies of repeat missing from this \nassembly." CHROMOSOME_IV assembly_tag Finished 12024899 12024902 . + . Note "Right: Y64F11A" CHROMOSOME_IV assembly_tag Clone 12024995 12025000 . + . Note "right end: Y64F11" CHROMOSOME_IV assembly_tag Finished 12027216 12027216 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12027216 12027219 . + . Note "left end: T12G3" CHROMOSOME_IV assembly_tag Clone 12027216 12027219 . + . Note "left end: Left hand end of T12G3." CHROMOSOME_IV assembly_tag Finished 12027312 12027315 . + . Note "Right: Y40D7A" CHROMOSOME_IV assembly_tag annotation 12037996 12038026 . + . Note "These 31 bases are in an inverted repeat region. They only have one strand covering them which is terminated." CHROMOSOME_IV assembly_tag annotation 12048857 12048862 . + . Note "Reads coming through run of Gs second set of Gs have 6 clear Gs these 6 bases are unclear region complicated by possible hairpin between GAA and following TTC regions, edited to best read." CHROMOSOME_IV assembly_tag Finished 12053361 12053361 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12053361 12053364 . + . Note "left end: Left hand end of K08E4." CHROMOSOME_IV assembly_tag Clone 12053361 12053364 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 12053361 12053364 . + . Note "left end: Left end of K08E4" CHROMOSOME_IV assembly_tag Clone 12053377 12053377 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 12053461 12053461 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12061775 12061778 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 12061775 12061778 . + . Note "right end: Right end of T12G3" CHROMOSOME_IV assembly_tag annotation 12063157 12063192 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12071504 12071576 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12071917 12071969 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12072985 12073134 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12073586 12073620 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12074102 12074131 . + . Note "single stranded with terminators" CHROMOSOME_IV assembly_tag annotation 12074852 12075070 . + . Note "single stranded with terminators" CHROMOSOME_IV assembly_tag annotation 12075071 12075209 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12075354 12075494 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12075495 12075730 . + . Note "single stranded with term" CHROMOSOME_IV assembly_tag annotation 12075731 12075929 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12075930 12076196 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12076197 12076373 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12076374 12076419 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12077259 12077347 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12078858 12078996 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12079258 12079499 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12079500 12079683 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12079684 12079816 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12079817 12079836 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag Finished 12080503 12080503 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12080503 12080506 . + . Note "left end: F11A10" CHROMOSOME_IV assembly_tag Clone 12080503 12080506 . + . Note "left end: Left end of F11A10" CHROMOSOME_IV assembly_tag Clone 12080503 12080506 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 12080608 12080608 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12089449 12089452 . + . Note "right end: K08F4" CHROMOSOME_IV assembly_tag Finished 12100019 12100019 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12100019 12100022 . + . Note "left end: M18" CHROMOSOME_IV assembly_tag Clone 12100019 12100022 . + . Note "left end: M18" CHROMOSOME_IV assembly_tag Finished 12100122 12100122 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12123215 12123218 . + . Note "right end: F11A10" CHROMOSOME_IV assembly_tag Finished 12126457 12126457 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12126457 12126460 . + . Note "left end: B0001" CHROMOSOME_IV assembly_tag Clone 12126457 12126460 . + . Note "left end: Left hand end of B0001. " CHROMOSOME_IV assembly_tag Finished 12126560 12126560 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12136462 12136465 . + . Note "right end: Right hand end of M18." CHROMOSOME_IV assembly_tag repeat 12138077 12138170 . + . CHROMOSOME_IV assembly_tag repeat 12138198 12138283 . + . CHROMOSOME_IV assembly_tag annotation 12138208 12138208 . + . Note "Unclear as part of inverted repeat." CHROMOSOME_IV assembly_tag annotation 12138213 12138213 . + . Note "Unclear base part of inverted repeat." CHROMOSOME_IV assembly_tag Finished 12165769 12165769 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12165769 12165772 . + . Note "right end: B0001" CHROMOSOME_IV assembly_tag Clone 12165769 12165772 . + . Note "right end: Right hand end of B0001." CHROMOSOME_IV assembly_tag Clone 12165769 12165772 . + . Note "left end: F20B10" CHROMOSOME_IV assembly_tag Finished 12165872 12165872 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12169247 12169252 . + . Note "tandem repeat size agrees with pcr check and restriction digest. Some templates show variation in individual bases " CHROMOSOME_IV assembly_tag annotation 12169996 12169996 . + . Note "variation between copies of the repeat some templates call T" CHROMOSOME_IV assembly_tag annotation 12170148 12170148 . + . Note "variation between copies of repeat some templates call TTTT edited to TTCT" CHROMOSOME_IV assembly_tag Clone 12172801 12172806 . + . Note "right end: ZC197" CHROMOSOME_IV assembly_tag annotation 12174901 12174901 . + . Note "this template only shows 10 A'sand it could be in either copy of the repeat" CHROMOSOME_IV assembly_tag Finished 12187579 12187579 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12187579 12187582 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 12187579 12187582 . + . Note "left end: F35G2" CHROMOSOME_IV assembly_tag Clone 12187579 12187582 . + . Note "left end: left end of F35G2" CHROMOSOME_IV assembly_tag Finished 12187682 12187682 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12192390 12192390 . + . Note "yp93d7 has 2 C's suspect a point mutation as no other trace agrees" CHROMOSOME_IV assembly_tag Clone 12202799 12202802 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 12202799 12202802 . + . Note "right end: F20B10" CHROMOSOME_IV assembly_tag annotation 12205744 12205791 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12206928 12207111 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12208482 12208578 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12208579 12208629 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12209401 12209621 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12209622 12209720 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12211946 12212083 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12213132 12213177 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12213178 12213195 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12213925 12213999 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12214000 12214034 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12216458 12216508 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag Clone 12222954 12222957 . + . Note "right end: F35G2" CHROMOSOME_IV assembly_tag Clone 12222954 12222957 . + . Note "right end: " CHROMOSOME_IV assembly_tag Finished 12222957 12222957 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 12318159 12318162 . + . Note "Left: Y39C12B" CHROMOSOME_IV assembly_tag annotation 12318159 12318449 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[x] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -Tandem repeat of unknown size.\n" CHROMOSOME_IV assembly_tag Finisher 12318199 12318199 . + . Note "comment: Changed back to a T after autoedit edited it to a A." CHROMOSOME_IV assembly_tag Clone 12318255 12318258 . + . Note "right end: K09E10" CHROMOSOME_IV assembly_tag Finished 12318350 12318350 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12318350 12318353 . + . Note "left end: F19B6" CHROMOSOME_IV assembly_tag Clone 12318350 12318353 . + . Note "left end: F19B6" CHROMOSOME_IV assembly_tag annotation 12318350 12318353 . + . Note "beginnning of cosmid marks the beginning of a tandem repeat. 94bp repeat unit. 10 copies assembled, restriction digest indormation suggests another 7 copies exist. This repeat is however unstable in the cosmid, so this number is not reliable" CHROMOSOME_IV assembly_tag Finished 12318446 12318449 . + . Note "Right: Y39C12B" CHROMOSOME_IV assembly_tag annotation 12319341 12319345 . + . Note "repeat boundary" CHROMOSOME_IV assembly_tag annotation 12321059 12321064 . + . Note "beginning of tandem repeat 218bp elemant corresponding to heavy 220bp band on finger-print. 20.5 copies assembled Restricion digest information suggests an unstable repeat element between (of which 150bp is flanking unique), suggesting approximately 28 copies. Obviously, the fact that the repeat is unstable makes this estimate in itself inaccurate" CHROMOSOME_IV assembly_tag annotation 12325629 12325640 . + . Note "end of tandem repeat" CHROMOSOME_IV assembly_tag Finished 12347795 12347795 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12347795 12347800 . + . Note "left end: ZC518" CHROMOSOME_IV assembly_tag Clone 12347795 12347800 . + . Note "left end: ZC518" CHROMOSOME_IV assembly_tag Finished 12347897 12347897 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12355539 12355542 . + . Note "right end: F19B6" CHROMOSOME_IV assembly_tag Finished 12370021 12370021 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12370021 12370024 . + . Note "left end: start of F28D1 the overlap between this consensus and the previously submitted ZC518 is 550bp instead of the usual 100bp in order to provide data about the F28D1 cloning site" CHROMOSOME_IV assembly_tag Finished 12370675 12370675 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12370675 12370675 . + . Note "first F28D1 read falls here, GATC must be to left" CHROMOSOME_IV assembly_tag annotation 12380583 12380587 . + . Note "end of last ZC518 read, cloning site position unknown" CHROMOSOME_IV assembly_tag Finished 12406217 12406217 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12406217 12406220 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 12406217 12406220 . + . Note "left end: F08G5" CHROMOSOME_IV assembly_tag Clone 12406217 12406220 . + . Note "left end: F08G5" CHROMOSOME_IV assembly_tag Finished 12406319 12406319 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12406938 12406941 . + . Note "right end: F28D1" CHROMOSOME_IV assembly_tag annotation 12430408 12430410 . + . Note "best-guess editing due to unclear sequence as a result of an inverted repeat. All subsequent ?annotation? tags over the next 100 bases mark similarly unclear calls" CHROMOSOME_IV assembly_tag annotation 12430412 12430414 . + . CHROMOSOME_IV assembly_tag annotation 12430451 12430455 . + . CHROMOSOME_IV assembly_tag annotation 12430470 12430470 . + . CHROMOSOME_IV assembly_tag annotation 12430477 12430479 . + . CHROMOSOME_IV assembly_tag annotation 12430480 12430487 . + . CHROMOSOME_IV assembly_tag annotation 12430541 12430541 . + . Note "last unclear base. All calls after this region are fine" CHROMOSOME_IV assembly_tag Finished 12438896 12438896 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12438896 12438899 . + . Note "left end: C25G4" CHROMOSOME_IV assembly_tag Clone 12438896 12438899 . + . Note "left end: C25G4" CHROMOSOME_IV assembly_tag Finished 12439000 12439000 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12446340 12446343 . + . Note "right end: F08G5" CHROMOSOME_IV assembly_tag annotation 12451721 12451722 . + . CHROMOSOME_IV assembly_tag Clone 12472498 12472501 . + . Note "left end: T04A11" CHROMOSOME_IV assembly_tag Finished 12472498 12472501 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12472498 12472501 . + . Note "left end: T04A11 clone left" CHROMOSOME_IV assembly_tag Finished 12472601 12472601 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12484366 12484373 . + . CHROMOSOME_IV assembly_tag Clone 12504696 12504699 . + . Note "left end: F53B2 clone left" CHROMOSOME_IV assembly_tag Finished 12511680 12511680 . + . Note "Left: " CHROMOSOME_IV assembly_tag comment 12511682 12511688 . + . Note "diverges here due to karens repeat" CHROMOSOME_IV assembly_tag Clone 12511777 12511780 . + . Note "right end: T04A11" CHROMOSOME_IV assembly_tag Finished 12511777 12511780 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12511777 12511780 . + . Note "left end: T04A11 clone right" CHROMOSOME_IV assembly_tag comment 12533317 12533324 . + . Note "these 2 yr14 reads diverge but there aren't ment to be in this cosmid" CHROMOSOME_IV assembly_tag Finished 12545054 12545054 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12545153 12545156 . + . Note "right end: F53B2" CHROMOSOME_IV assembly_tag Finished 12545156 12545156 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12545154 12545157 . - . Note "right end: F53B2" CHROMOSOME_IV assembly_tag annotation 12554208 12554208 . + . Note "two clones call c consensus is t" CHROMOSOME_IV assembly_tag annotation 12557905 12557905 . + . Note "two clones call tt consensus calls ct" CHROMOSOME_IV assembly_tag annotation 12560986 12560986 . + . Note "beginning of K08E7 finished sequence.\nNo overlap data was available at \ntime of completion, so clone \norientation is unknown" CHROMOSOME_IV assembly_tag Finished 12560986 12560986 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12560986 12560989 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 12560986 12560989 . + . Note "left end: K08E7" CHROMOSOME_IV assembly_tag Finished 12561086 12561086 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12571955 12571955 . + . Note "long gel seems to have strange spacing\nthere calling 2 g's." CHROMOSOME_IV assembly_tag annotation 12571975 12571975 . + . Note "long gel has strange spacing there\ncalling 2 g's." CHROMOSOME_IV assembly_tag Finished 12599350 12599353 . + . Note "Left: Y55D9A" CHROMOSOME_IV assembly_tag Clone 12599446 12599449 . + . Note "right end: K08E7" CHROMOSOME_IV assembly_tag Clone 12599446 12599449 . + . Note "right end: K08E7" CHROMOSOME_IV assembly_tag Finished 12599449 12599449 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12608488 12608601 . + . Note "[ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other CommentRegion in loop of inverted repeat consisting of single clone found by screening pUC library of Y55D9. Theassembly has been confirmed by restrictiondigest (PSTI, XHOI)." CHROMOSOME_IV assembly_tag Clone 12616216 12616219 . + . Note "left end: C01C7" CHROMOSOME_IV assembly_tag Clone 12616216 12616219 . + . Note "left end: C01C7" CHROMOSOME_IV assembly_tag Finished 12616216 12616219 . - . Note "Left: C01C7" CHROMOSOME_IV assembly_tag Finished 12616312 12616315 . + . Note "Right: Y55D9A" CHROMOSOME_IV assembly_tag annotation 12621685 12621721 . + . Note "This is part of the loop of an inverted repeat and therefore have only managed to get one clone across." CHROMOSOME_IV assembly_tag Clone 12636343 12636346 . + . Note "right end: C26H9" CHROMOSOME_IV assembly_tag Finished 12636439 12636442 . - . Note "Right: C01C7" CHROMOSOME_IV assembly_tag Finished 12662662 12662665 . + . Note "Left: VT23B5" CHROMOSOME_IV assembly_tag Clone 12662762 12662765 . + . Note "right end: C26H9" CHROMOSOME_IV assembly_tag Finished 12671382 12671382 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12671382 12671385 . + . Note "left end: T23B5" CHROMOSOME_IV assembly_tag Clone 12671382 12671385 . + . Note "left end: T23B5" CHROMOSOME_IV assembly_tag annotation 12671422 12671422 . + . Note "single read shows G > C transition\nbut this is probably a gel artifact" CHROMOSOME_IV assembly_tag Finished 12671472 12671475 . + . Note "Right: VT23B5" CHROMOSOME_IV assembly_tag annotation 12698050 12698122 . + . Note "region covered by single double-\nstranded phagemid clone only. Area\ncomprises loop and part of both\narms of repeat, and has been edited\nto "best guess" in many places.\nSequence over these bases is uncertain" CHROMOSOME_IV assembly_tag Finished 12700294 12700294 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12700294 12700297 . + . Note "left end: C27D8" CHROMOSOME_IV assembly_tag Clone 12700294 12700297 . + . Note "left end: C27D8" CHROMOSOME_IV assembly_tag Finished 12700397 12700397 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12706222 12706222 . + . Note "th13h6 could have possible point mutation of c to g" CHROMOSOME_IV assembly_tag Clone 12706962 12706965 . + . Note "right end: T23B5" CHROMOSOME_IV assembly_tag Clone 12719136 12719139 . + . Note "left end: T23F6" CHROMOSOME_IV assembly_tag Finished 12719136 12719139 . + . Note "Left: T23F6" CHROMOSOME_IV assembly_tag Clone 12719136 12719139 . - . Note "left end: T23F6." CHROMOSOME_IV assembly_tag Finished 12719239 12719239 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12730471 12732678 . + . Note "[x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other CommentRegion of 26 base pair tandem repeat.Some base pair differences have been edited. The size of the repeat region in this assembly has been confirmed by restriction digest (SACI). " CHROMOSOME_IV assembly_tag Clone 12739807 12739810 . - . Note "right end: C27D8" CHROMOSOME_IV assembly_tag Finished 12740549 12740549 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12740549 12740552 . + . Note "left end: C36H8." CHROMOSOME_IV assembly_tag Clone 12740549 12740552 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 12740645 12740648 . + . Note "Right: T23F6" CHROMOSOME_IV assembly_tag Clone 12749745 12749748 . + . Note "right end: T23F6" CHROMOSOME_IV assembly_tag Finished 12759481 12759481 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12759481 12759484 . + . Note "left end: ZK897" CHROMOSOME_IV assembly_tag Clone 12759481 12759484 . + . Note "left end: ZK897" CHROMOSOME_IV assembly_tag Finished 12759584 12759584 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12779409 12779412 . + . Note "right end: C36H8" CHROMOSOME_IV assembly_tag Finished 12788892 12788892 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12788892 12788895 . + . Note "left end: F07C6" CHROMOSOME_IV assembly_tag Clone 12788892 12788895 . + . Note "left end: F07C6" CHROMOSOME_IV assembly_tag Finished 12788997 12788997 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12798074 12798077 . + . Note "right end: ZK897" CHROMOSOME_IV assembly_tag Finished 12823584 12823584 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12823584 12823587 . + . Note "left end: M02B1" CHROMOSOME_IV assembly_tag Clone 12823584 12823587 . + . Note "left end: M02B1" CHROMOSOME_IV assembly_tag Finished 12823688 12823688 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 12851847 12851847 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12851847 12851850 . + . Note "left end: ZK896 clone left end" CHROMOSOME_IV assembly_tag Clone 12851847 12851850 . + . Note "left end: ZK896" CHROMOSOME_IV assembly_tag Finished 12851947 12851947 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12862226 12862229 . - . Note "right end: M02B1 clone right end" CHROMOSOME_IV assembly_tag annotation 12863868 12863869 . - . Note "this clone shows a point mutation ac\nand has been edited to the consensus of the other reads aa" CHROMOSOME_IV assembly_tag annotation 12863869 12863869 . + . Note "this clone shows a point mutation ac and has been edited to the consensus of the other reads aa" CHROMOSOME_IV assembly_tag annotation 12886509 12886537 . + . Note "this region is single stranded only\nbut is covered walks on a cosmid pcr" CHROMOSOME_IV assembly_tag Finished 12889454 12889457 . + . Note "Left: VK08D8" CHROMOSOME_IV assembly_tag Clone 12889554 12889557 . + . Note "right end: ZK896" CHROMOSOME_IV assembly_tag Clone 12889554 12889557 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 12889554 12889557 . + . Note "right end: Zk896 clone right end" CHROMOSOME_IV assembly_tag Finished 12889557 12889557 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 12889911 12889911 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12889911 12889914 . + . Note "left end: K08D8" CHROMOSOME_IV assembly_tag Clone 12889911 12889914 . + . Note "left end: K08D8" CHROMOSOME_IV assembly_tag Finished 12890011 12890014 . + . Note "Right: VK08D8" CHROMOSOME_IV assembly_tag annotation 12891340 12891343 . + . Note "Tandem repeat assembled according to restriction digest. PCR product from cosmid is deleting across this region" CHROMOSOME_IV assembly_tag annotation 12891594 12891623 . + . Note "single template across tandem repeat cosmid PCR deletes this region." CHROMOSOME_IV assembly_tag annotation 12891781 12891834 . + . Note "only cosmid pcr product for this region which is unique after tandem repeat" CHROMOSOME_IV assembly_tag annotation 12906712 12906712 . + . Note "point mutation in templates ys68c4 and ys67c2" CHROMOSOME_IV assembly_tag Finished 12914074 12914077 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12914074 12914077 . + . Note "left end: C32H11" CHROMOSOME_IV assembly_tag Clone 12914074 12914077 . - . Note "left end: C32H11" CHROMOSOME_IV assembly_tag Finished 12914177 12914177 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12921089 12921092 . + . Note "right end: K08D8" CHROMOSOME_IV assembly_tag annotation 12932146 12932787 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a 168bp tandem repeat element. The digest with BanII suggests that there is approximately 1.5kb missing from this assembly in this region." CHROMOSOME_IV assembly_tag Finished 12945624 12945624 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12945624 12945627 . + . Note "left end: F55G11" CHROMOSOME_IV assembly_tag Clone 12945624 12945627 . + . Note "left end: F55G11" CHROMOSOME_IV assembly_tag Finished 12945724 12945727 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12955111 12955113 . - . Note "right end: " CHROMOSOME_IV assembly_tag Finished 12974446 12974446 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12974446 12974449 . + . Note "left end: K10D11" CHROMOSOME_IV assembly_tag Clone 12974446 12974449 . + . Note "left end: K10D11" CHROMOSOME_IV assembly_tag Finished 12974546 12974546 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12981429 12981429 . + . Note "clone tg95d7 has point mutation og G\nto a C" CHROMOSOME_IV assembly_tag Clone 12983902 12983905 . + . Note "right end: F55G11" CHROMOSOME_IV assembly_tag annotation 13005256 13005262 . + . Note "deletion of 7 bases in this clone" CHROMOSOME_IV assembly_tag Clone 13008298 13008301 . + . Note "left end: T13E8" CHROMOSOME_IV assembly_tag Finished 13011665 13011665 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13011764 13011767 . + . Note "right end: K10D11" CHROMOSOME_IV assembly_tag Clone 13011764 13011767 . + . Note "right end: K10D11" CHROMOSOME_IV assembly_tag Finished 13011767 13011767 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 13028020 13028020 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13028020 13028023 . + . Note "left end: left end of F49E11" CHROMOSOME_IV assembly_tag Clone 13028020 13028023 . + . Note "left end: F49E11" CHROMOSOME_IV assembly_tag Finished 13028124 13028124 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 13060376 13060376 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13060376 13060379 . + . Note "left end: left end of C39E9" CHROMOSOME_IV assembly_tag Clone 13060376 13060379 . + . Note "left end: Left hand end of C39E9." CHROMOSOME_IV assembly_tag Finished 13060477 13060477 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13064457 13064460 . + . Note "right end: Right hand end of F49E11." CHROMOSOME_IV assembly_tag comment 13097296 13097296 . + . Note "add A 30-12-01 jes" CHROMOSOME_IV assembly_tag Finished 13098157 13098157 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13098157 13098160 . + . Note "left end: B0564" CHROMOSOME_IV assembly_tag Clone 13098157 13098160 . + . Note "left end: Left hand end of B0564." CHROMOSOME_IV assembly_tag Finished 13098260 13098260 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13102214 13102217 . + . Note "right end: C39E9" CHROMOSOME_IV assembly_tag annotation 13112769 13112770 . + . Note "single read missing AC" CHROMOSOME_IV assembly_tag annotation 13113052 13113052 . + . Note "single read (same as previous tag) has mutation T > C" CHROMOSOME_IV assembly_tag annotation 13121680 13121680 . + . Note "single read lacks this G" CHROMOSOME_IV assembly_tag annotation 13126069 13126069 . + . Note "missing C on single read" CHROMOSOME_IV assembly_tag Finished 13137389 13137389 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13137389 13137392 . + . Note "left end: F09E8" CHROMOSOME_IV assembly_tag Clone 13137389 13137392 . + . Note "left end: F09E8" CHROMOSOME_IV assembly_tag Finished 13137489 13137489 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 13165495 13165501 . + . Note "6 base pairs single clone but terminated" CHROMOSOME_IV assembly_tag Finished 13173748 13173751 . + . Note "Left: F58D2" CHROMOSOME_IV assembly_tag Clone 13173748 13173751 . + . Note "left end: F58D2" CHROMOSOME_IV assembly_tag Clone 13177509 13177512 . + . Note "right end: F09E8" CHROMOSOME_IV assembly_tag Clone 13177509 13177512 . - . Note "right end: F09E8" CHROMOSOME_IV assembly_tag Finished 13177512 13177512 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 13192918 13192918 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13192918 13192921 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 13192918 13192921 . + . Note "left end: C48D1" CHROMOSOME_IV assembly_tag Finished 13193014 13193017 . + . Note "Right: F58D2" CHROMOSOME_IV assembly_tag annotation 13202584 13202619 . + . Note "region covered by single read.\nCorresponds to loop and part of \narm of inverted repeat (see analysis\ndata)\n" CHROMOSOME_IV assembly_tag Clone 13211424 13211427 . - . Note "right end: Right hand end of F58D2." CHROMOSOME_IV assembly_tag Clone 13225937 13225940 . + . Note "left end: JC8" CHROMOSOME_IV assembly_tag Finished 13225937 13225940 . + . Note "Left: JC8" CHROMOSOME_IV assembly_tag Clone 13232822 13232825 . + . Note "right end: C48D1" CHROMOSOME_IV assembly_tag Clone 13232822 13232825 . - . Note "right end: C48D1" CHROMOSOME_IV assembly_tag Finished 13232825 13232825 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 13244772 13244774 . + . Note "3 bp covered by one clone only." CHROMOSOME_IV assembly_tag Finished 13265386 13265389 . + . Note "Left: Y67H2A" CHROMOSOME_IV assembly_tag Clone 13265486 13265489 . + . Note "right end: JC8" CHROMOSOME_IV assembly_tag Finished 13265486 13265489 . + . Note "Right: JC8" CHROMOSOME_IV assembly_tag Finished 13323025 13323030 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13323025 13323030 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 13323023 13323029 . - . Note "left end: W02A2" CHROMOSOME_IV assembly_tag Finished 13323127 13323130 . + . Note "Right: Y67H2A" CHROMOSOME_IV assembly_tag annotation 13348734 13348738 . - . Note "probably 5 Gs" CHROMOSOME_IV assembly_tag Finished 13358900 13358903 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13358900 13358903 . + . Note "right end: no orientation of clone at present." CHROMOSOME_IV assembly_tag Finished 13415941 13415944 . - . Note "Left: K09B11" CHROMOSOME_IV assembly_tag Clone 13415941 13415944 . - . Note "left end: K09B11" CHROMOSOME_IV assembly_tag annotation 13440627 13440741 . - . Note "bases 14001 - 14115 are covered by\nreads from a single sonicated clone, in\nthe inverted repeat region (bases 13750\n- 14230)." CHROMOSOME_IV assembly_tag annotation 13449845 13449877 . - . Note "bases 4865 - 4897 are covered by a \nsingle pUC clone. Size confirmed by\nrestriction digest." CHROMOSOME_IV assembly_tag annotation 13450001 13450079 . - . Note "bases 4148 - 4742 covered by clones\nfrom a sonicated pcr product. Region\nis confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 13450080 13450350 . - . Note "bases 4148 - 4742 covered by clones\nfrom a sonicated pcr product. Region\nis confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 13450351 13450594 . - . CHROMOSOME_IV assembly_tag annotation 13451903 13452041 . - . CHROMOSOME_IV assembly_tag Finished 13454638 13454641 . + . Note "Left: Y38H8A" CHROMOSOME_IV assembly_tag Clone 13454738 13454741 . + . Note "left end: K09B11" CHROMOSOME_IV assembly_tag Finished 13454738 13454741 . - . Note "Right: K09B11" CHROMOSOME_IV assembly_tag Clone 13454738 13454741 . - . Note "right end: K09B11" CHROMOSOME_IV assembly_tag annotation 13479827 13479891 . + . CHROMOSOME_IV assembly_tag annotation 13480046 13480055 . + . Note "inverted repeat region - base count is correct although individual base calls\nmay possibly be incorrect" CHROMOSOME_IV assembly_tag annotation 13484758 13485059 . + . Note "single clone over bases 68877- 69179 in the inverted repeat region\n" CHROMOSOME_IV assembly_tag annotation 13487463 13487476 . + . Note "single clone over bases 71581 - 71595\nin inverted repeat region" CHROMOSOME_IV assembly_tag Finished 13489609 13489614 . + . Note "Left: Y45F10A" CHROMOSOME_IV assembly_tag Clone 13489609 13489614 . + . Note "left end: Y45F10A" CHROMOSOME_IV assembly_tag Clone 13489609 13489614 . + . Note "left end: Y45F10" CHROMOSOME_IV assembly_tag Finished 13489711 13489714 . + . Note "Right: Y38H8A" CHROMOSOME_IV assembly_tag annotation 13496077 13496134 . + . Note "single clone across bases 6469 - 6526.\nSize confirmed by restriction digest\nof pUC clone." CHROMOSOME_IV assembly_tag annotation 13503994 13504104 . + . Note "single clone across bases 14386 -14496 " CHROMOSOME_IV assembly_tag annotation 13506408 13506438 . + . Note "single sonicated pUC subclone across\nbases 16800 - 16829, in the inverted \nrepeat region ( bases 16780 - 16945)." CHROMOSOME_IV assembly_tag Finished 13515848 13515851 . + . Note "Left: F52G2" CHROMOSOME_IV assembly_tag Clone 13515848 13515851 . + . Note "left end: F52G2" CHROMOSOME_IV assembly_tag Clone 13515848 13515851 . + . Note "left end: F52G2" CHROMOSOME_IV assembly_tag Finished 13515948 13515951 . + . Note "Right: Y45F10A" CHROMOSOME_IV assembly_tag annotation 13533102 13533185 . + . Note "Region covered by single sonicated clone in the inverted repeat covering bases 22246 to 23146." CHROMOSOME_IV assembly_tag annotation 13544043 13544561 . + . Note "Bases 28196 - 28714 deleted from F52G2.Sequence is present in yac Y45F10 and has been stolen from there." CHROMOSOME_IV assembly_tag Finished 13555015 13555018 . + . Note "Left: Y45F10B" CHROMOSOME_IV assembly_tag Finished 13555115 13555118 . + . Note "Right: F52G2" CHROMOSOME_IV assembly_tag Clone 13555115 13555118 . - . Note "right end: F52G2" CHROMOSOME_IV assembly_tag Clone 13555115 13555118 . - . Note "left end: F52G2" CHROMOSOME_IV assembly_tag oligo 13556330 13556346 . + . Note "serial#=Y45F10-1\ntemplate=vo29e6.r1t \nsequence=AAGTTAGTCTCAGGCTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13556412 13556429 . + . Note "serial#=Y45F10-48\ntemplate=vo29e6.r1t \nsequence=TCAGTCAAGTGAATTTCC\nflags=\n" CHROMOSOME_IV assembly_tag cosmid 13558151 13558207 . - . Note "vector: " CHROMOSOME_IV assembly_tag oligo 13559828 13559845 . + . Note "serial#=Y45F10-18\ntemplate=vo19a5.f1tl \nsequence=AAAAACAAAACTCCGCAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13562892 13562909 . + . Note "serial#=\ntemplate=vo22b3.f1 \nsequence=TTTTTTGACATTACCGCC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13562892 13562909 . + . Note "serial#=Y45F10-49\ntemplate=vo22b3.f1 \nsequence=TTTTTTGACATTACCGCC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13566318 13566336 . - . Note "serial#=Y45F10-25\ntemplate=vo22b3.r1t \nsequence=CGGTCATTCATTTTTAGAG\nflags=\n" CHROMOSOME_IV assembly_tag Clone 13570518 13570521 . + . Note "left end: H06C16" CHROMOSOME_IV assembly_tag cosmid 13570518 13570522 . - . Note "vector: " CHROMOSOME_IV assembly_tag repeat 13572048 13572296 . - . Note "Repeats with contig Y45F10-J3.18, offset 1\n" CHROMOSOME_IV assembly_tag oligo 13576172 13576188 . + . Note "serial#=Y45F10-24\ntemplate=vo11f12.f1 \nsequence=CGGTGTTGCCGATATTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13578965 13578982 . - . Note "serial#=Y45F10-27\ntemplate=vn98b10.f1 \nsequence=GCACTTATGAACTCAAAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13583542 13583559 . + . Note "serial#=Y45F10-26\ntemplate=vn35h2.r1t \nsequence=GGGACTAAAAAACTCTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13584196 13584213 . + . Note "serial#=Y45F10-50\nsequence=TGTCATTTGTTACAACCC\nflags=\n" CHROMOSOME_IV assembly_tag comment 13585726 13585732 . - . Note "?chimaeric clone" CHROMOSOME_IV assembly_tag cosmid 13586010 13586061 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13586158 13586173 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13586147 13586199 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13586148 13586203 . - . Note "vector: " CHROMOSOME_IV assembly_tag annotation 13586228 13586418 . + . Note "single sonicated clone across bases\n82650 - 82935 in the inverted repeat\nregion (bases 82520 - 83165)." CHROMOSOME_IV assembly_tag comment 13586282 13586288 . + . Note "chimaeric clone" CHROMOSOME_IV assembly_tag Inverted 13586101 13586364 . - . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13586365 13586380 . - . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13586381 13586402 . - . Note "Repeat: " CHROMOSOME_IV assembly_tag annotation 13586419 13586500 . + . Note "single sonicated clone across bases\n82650 - 82935 in the inverted repeat\nregion (bases 82520 - 83165)." CHROMOSOME_IV assembly_tag Inverted 13586439 13586461 . + . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13586462 13586471 . + . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13586472 13586741 . + . Note "Repeat: " CHROMOSOME_IV assembly_tag annotation 13586501 13586513 . + . Note "single sonicated clone across bases\n82650 - 82935 in the inverted repeat\nregion (bases 82520 - 83165)." CHROMOSOME_IV assembly_tag oligo 13586581 13586597 . - . Note "serial#=Y45F10-40\ntemplate=vo01c3.f1 \nsequence=GCAAGTAGCAGTGAAAG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13586979 13587000 . + . Note "serial#=Y45F10-41\ntemplate=vo37h10.f1 \nsequence=CCGTGACTCGTAAATTAAAAAA\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13587801 13587818 . - . Note "serial#=Y45F10-12\ntemplate=vn99a1.f1tl \nsequence=ATGAACGGAAATGAGTTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13592451 13592473 . + . Note "serial#=Y45F10-13\nsequence=GACATTTTTCTCTAACATCTAAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13593063 13593083 . - . Note "serial#=Y45F10-11\nsequence=TTAACAAAGCCTATACATTAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13600016 13600037 . + . Note "serial#=Y45F10-10\nsequence=CAGTGAGGTATTTCTAAAAAAG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13600896 13600914 . - . Note "serial#=Y45F10-22\ntemplate=vn34c11.f1 \nsequence=GTTGACAAGAATTTTCACC\nflags=\n" CHROMOSOME_IV assembly_tag compression 13601088 13601094 . + . CHROMOSOME_IV assembly_tag Clone 13607504 13607507 . + . Note "right end: C08F11" CHROMOSOME_IV assembly_tag Clone 13607504 13607507 . - . Note "left end: C08F11\n" CHROMOSOME_IV assembly_tag Finished 13607504 13607507 . - . Note "Left: C08F11" CHROMOSOME_IV assembly_tag Finished 13607604 13607607 . + . Note "Right: Y45F10B" CHROMOSOME_IV assembly_tag Finished 13653079 13653082 . + . Note "Left: Y45F10C" CHROMOSOME_IV assembly_tag Clone 13653179 13653182 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 13653179 13653182 . - . Note "Right: C08F11" CHROMOSOME_IV assembly_tag Clone 13653179 13653182 . - . Note "right end: C08F11" CHROMOSOME_IV assembly_tag annotation 13658085 13658221 . + . Note "single sonicated clone across this \nregion" CHROMOSOME_IV assembly_tag annotation 13658891 13659271 . + . Note "single sonicated clone across this \nregion" CHROMOSOME_IV assembly_tag annotation 13659358 13659612 . + . Note "single clone across this region, base\ncount confirmed by poor quality read\n6774" CHROMOSOME_IV assembly_tag annotation 13663019 13663021 . + . Note "GTT missing from some reads - edited\nto include these missing bases" CHROMOSOME_IV assembly_tag cosmid 13671781 13671781 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13671781 13671784 . - . Note "Left: T23G4" CHROMOSOME_IV assembly_tag Clone 13671781 13671784 . - . Note "left end: T23G4" CHROMOSOME_IV assembly_tag Clone 13671781 13671784 . - . Note "right end: T23G4" CHROMOSOME_IV assembly_tag Finished 13671881 13671884 . + . Note "Right: Y45F10C" CHROMOSOME_IV assembly_tag cosmid 13675386 13675396 . + . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13675714 13675724 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13676213 13676218 . + . Note "vector: " CHROMOSOME_IV assembly_tag Clone 13676213 13676216 . - . Note "left end: F52D4" CHROMOSOME_IV assembly_tag cosmid 13676213 13676216 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13676213 13676217 . - . Note "vector: " CHROMOSOME_IV assembly_tag annotation 13683287 13683296 . - . Note "Some reads are 9 A's some reads are 10 A's\nEdited to 10" CHROMOSOME_IV assembly_tag cosmid 13684144 13684156 . - . Note "vector: " CHROMOSOME_IV assembly_tag oligo 13688876 13688893 . + . Note "serial#=F52D4.5\ntemplate=vc98e7.s1 \nsequence=GTCAATAAGATGTCCTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13689494 13689511 . + . Note "serial#=T23G4.2\ntemplate=vc08d10.s1 \nsequence=TGAAGAAGAGATCGTTTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13689882 13689900 . + . Note "serial#=T23G4.3\ntemplate=vc08d10.st2 \nsequence=CGGACAAACAGATTTATTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13690501 13690521 . - . Note "serial#=F52D4.2\ntemplate=va94d9.s1t \nsequence=GTTTCACGCTAAACATTTATG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13690720 13690740 . - . Note "serial#=F52D4.1\ntemplate=va94d9.s1t \nsequence=CTTGAGTTTTCAACTAGATTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13690971 13690988 . - . Note "serial#=T23G4.1\nsequence=GTTTTGCGTGAAACAGTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13691660 13691682 . - . Note "serial#=F52D4.3\nsequence=CAATATTTTCAGACAAATGAAGC\nflags=\n" CHROMOSOME_IV assembly_tag cosmid 13696534 13696544 . + . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13701444 13701452 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13706169 13706172 . + . Note "Left: " CHROMOSOME_IV assembly_tag cosmid 13706268 13706272 . + . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13706267 13706272 . - . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13706269 13706272 . - . Note "Right: T23G4" CHROMOSOME_IV assembly_tag Clone 13706269 13706272 . - . Note "right end: T23G4" CHROMOSOME_IV assembly_tag Clone 13706269 13706272 . - . Note "left end: T23G4" CHROMOSOME_IV assembly_tag cosmid 13706272 13706272 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13712390 13712393 . + . Note "Left: C47A4" CHROMOSOME_IV assembly_tag Finished 13712490 13712493 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13712490 13712493 . - . Note "left end: F52D4" CHROMOSOME_IV assembly_tag Clone 13712490 13712493 . - . Note "right end: F52D4" CHROMOSOME_IV assembly_tag Clone 13722205 13722208 . - . Note "right end: F56F12" CHROMOSOME_IV assembly_tag annotation 13734208 13736915 . - . Note "First select a Feature -[ ] Unsure[*] Misc_featureThen select the text for the note(s) -[*] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here - 30 copies of 93 base tandem repeat, typical unit : TAGGCTTGAGTGAATAACAACCTGCTTGGAATAGGATTATAGCCAGCCCAGTTTCCAAGACTATTCGGGCCTGCGGCCCTCAAACTTGGTTGA. Restriction digest indicates that approximately 8 copies are missing from this region." CHROMOSOME_IV assembly_tag Finished 13752953 13752956 . + . Note "Left: F56F12" CHROMOSOME_IV assembly_tag Clone 13753050 13753053 . - . Note "right end: C47A4" CHROMOSOME_IV assembly_tag Clone 13753050 13753053 . - . Note "right end: C47A4" CHROMOSOME_IV assembly_tag Finished 13753050 13753053 . - . Note "Right: C47A4" CHROMOSOME_IV assembly_tag Finished 13759731 13759734 . + . Note "Left: Y45F10D" CHROMOSOME_IV assembly_tag Finished 13759831 13759834 . + . Note "Right: F56F12" CHROMOSOME_IV assembly_tag Clone 13759831 13759834 . + . Note "right end: F56F12" CHROMOSOME_IV assembly_tag Clone 13759831 13759834 . - . Note "left end: " CHROMOSOME_IV assembly_tag annotation 13764548 13764752 . + . Note "single clone across bases 276363 -\n276567. Confirmed by poor quality data\nfrom another clone" CHROMOSOME_IV assembly_tag annotation 13769909 13769931 . + . Note "single clone across bases 281730 -\n281752, assembly confirmed by restriction digest" CHROMOSOME_IV assembly_tag annotation 13802465 13802512 . + . Note "bases 314283 - 314330 are covered by a single clone, sequenced with 2\ndifferent chemistries." CHROMOSOME_IV assembly_tag annotation 13814646 13814717 . + . Note "single clone across bases 326467 -\n326538. Region confirmed by restriction\ndigest." CHROMOSOME_IV assembly_tag Clone 13819200 13819203 . + . Note "left end: H08M01" CHROMOSOME_IV assembly_tag Clone 13819200 13819203 . + . Note "left end: H08M01" CHROMOSOME_IV assembly_tag Finished 13819200 13819203 . - . Note "Left: H08M01" CHROMOSOME_IV assembly_tag Finished 13819300 13819303 . - . Note "Right: Y45F10D" CHROMOSOME_IV assembly_tag Finished 13850364 13850367 . + . Note "Left: B0513" CHROMOSOME_IV assembly_tag Clone 13850364 13850367 . - . Note "left end: B0513\nNo overlaps" CHROMOSOME_IV assembly_tag Clone 13850364 13850367 . - . Note "left end: B0513\n" CHROMOSOME_IV assembly_tag Finished 13850464 13850467 . - . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13858402 13858405 . + . Note "left end: F14E12" CHROMOSOME_IV assembly_tag annotation 13868269 13868298 . - . Note "Single clone region\nAsssembly confirmed by restriction\ndigest" CHROMOSOME_IV assembly_tag annotation 13880105 13880128 . - . Note "Number of Gs may not be accurate" CHROMOSOME_IV assembly_tag Finished 13892874 13892877 . + . Note "Left: F14E12" CHROMOSOME_IV assembly_tag Finished 13892974 13892977 . + . Note "Right: B0513" CHROMOSOME_IV assembly_tag Clone 13892975 13892978 . + . Note "right end: B0513" CHROMOSOME_IV assembly_tag cosmid 13892972 13892977 . - . Note "vector: " CHROMOSOME_IV assembly_tag Clone 13892974 13892977 . - . Note "left end: B0513" CHROMOSOME_IV assembly_tag Clone 13892974 13892977 . - . Note "right end: B0513" CHROMOSOME_IV assembly_tag Finished 13894059 13894062 . + . Note "Left: Y37A1A\n" CHROMOSOME_IV assembly_tag Clone 13894059 13894062 . + . Note "left end: Y37A1A" CHROMOSOME_IV assembly_tag cosmid 13894159 13894163 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13894160 13894163 . + . Note "Right: F14E12" CHROMOSOME_IV assembly_tag Clone 13894160 13894163 . + . Note "right end: F14E12" CHROMOSOME_IV assembly_tag cosmid 13894160 13894163 . + . Note "vector: " CHROMOSOME_IV assembly_tag Clone 13894160 13894163 . - . Note "right end: F14E12" CHROMOSOME_IV assembly_tag cosmid 13894163 13894163 . + . Note "vector: " CHROMOSOME_IV assembly_tag comment 13902815 13902833 . + . Note "Check this edit." CHROMOSOME_IV assembly_tag Clone 13936923 13936926 . + . Note "left end: C27H2" CHROMOSOME_IV assembly_tag Finished 13936923 13936926 . - . Note "Left: C27H2" CHROMOSOME_IV assembly_tag Clone 13936923 13936926 . - . Note "left end: C27H2" CHROMOSOME_IV assembly_tag Finished 13937023 13937026 . + . Note "Right: Y37A1A" CHROMOSOME_IV assembly_tag Finished 13973129 13973132 . + . Note "Left: Y37A1B" CHROMOSOME_IV assembly_tag Clone 13973227 13973230 . + . Note "right end: C27H2" CHROMOSOME_IV assembly_tag Finished 13973227 13973230 . - . Note "Right: C27H2" CHROMOSOME_IV assembly_tag Clone 13973227 13973230 . - . Note "right end: C27H2" CHROMOSOME_IV assembly_tag Clone 14072108 14072111 . + . Note "left end: F52B11" CHROMOSOME_IV assembly_tag Clone 14072108 14072111 . - . Note "left end: F52B11" CHROMOSOME_IV assembly_tag Finished 14072108 14072111 . - . Note "Left: F52B11" CHROMOSOME_IV assembly_tag Finished 14072208 14072211 . + . Note "Right: Y37A1B" CHROMOSOME_IV assembly_tag annotation 14079581 14079609 . - . Note "This region is only covered by a single clone. This clone vo47h8 has been sonicated. The region is consistent with the digest." CHROMOSOME_IV assembly_tag annotation 14079853 14079890 . - . Note "This region is covered only by a single clone vo47h8. The region is consistent with the digest." CHROMOSOME_IV assembly_tag Finished 14114865 14114868 . + . Note "Left: Y37A1C" CHROMOSOME_IV assembly_tag Clone 14114965 14114968 . + . Note "right end: F52B11" CHROMOSOME_IV assembly_tag Finished 14114965 14114968 . - . Note "Right: F52B11" CHROMOSOME_IV assembly_tag Clone 14114965 14114968 . - . Note "right end: F52B11" CHROMOSOME_IV assembly_tag Clone 14117149 14117152 . + . Note "left end: H12I19" CHROMOSOME_IV assembly_tag Finished 14117149 14117152 . + . Note "Left: H12I19" CHROMOSOME_IV assembly_tag Clone 14117149 14117152 . - . Note "left end: H12I19" CHROMOSOME_IV assembly_tag Finished 14117249 14117252 . + . Note "Right: Y37A1C" CHROMOSOME_IV assembly_tag Clone 14130637 14130640 . - . Note "right end: T08E3" CHROMOSOME_IV assembly_tag Clone 14154472 14154477 . + . Note "left end: R05A10" CHROMOSOME_IV assembly_tag Finished 14154472 14154477 . - . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14154472 14154477 . - . Note "left end: R05A10" CHROMOSOME_IV assembly_tag Finished 14154572 14154575 . - . Note "Right: H12I19" CHROMOSOME_IV assembly_tag Clone 14155249 14155254 . + . Note "right end: Y37A1" CHROMOSOME_IV assembly_tag annotation 14158732 14158798 . + . Note "Single clone region. \nRestriction digest confirms assembly." CHROMOSOME_IV assembly_tag annotation 14185180 14185182 . + . Note "Single clone across this region.\nRestriction digest confirms assembly." CHROMOSOME_IV assembly_tag Finished 14186482 14186485 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14186482 14186485 . + . Note "left end: K01G12" CHROMOSOME_IV assembly_tag Clone 14186482 14186485 . - . Note "left end: " CHROMOSOME_IV assembly_tag Finished 14186582 14186585 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14193972 14193977 . - . Note "right end: " CHROMOSOME_IV assembly_tag Finished 14196983 14196986 . + . Note "Left: F02H6" CHROMOSOME_IV assembly_tag Clone 14196983 14196986 . + . Note "left end: F02H6" CHROMOSOME_IV assembly_tag Clone 14196983 14196986 . + . Note "left end: F02H6" CHROMOSOME_IV assembly_tag Finished 14197083 14197086 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 14210833 14215361 . + . Note "Tandem repeat \ntypical repeat element TTCCTTTCGTGCAAAGGAATGTCCTCTAGCATTCGAGCATGCACAAAGACACCGACAACTCCACAGTCTCTCCCAC (a 66-mer).\nEstimated size 4.5kb, from restriction\ndigest data.\n" CHROMOSOME_IV assembly_tag annotation 14217923 14218152 . + . Note "[y ] Tandem repeat \n\nComment: Restriction digest confirms \nsize of this repeat to be 2.4kb.\n" CHROMOSOME_IV assembly_tag annotation 14218423 14218601 . + . Note "[ ] Tandem repeat \n\nComment: size confirmed by restriction digest.\n" CHROMOSOME_IV assembly_tag Finished 14230989 14230992 . - . Note "Left: Y64G10A" CHROMOSOME_IV assembly_tag Clone 14231086 14231089 . + . Note "right end: F02H6" CHROMOSOME_IV assembly_tag Clone 14231086 14231089 . + . Note "right end: F02H6" CHROMOSOME_IV assembly_tag Finished 14231086 14231089 . + . Note "Right: F02H6" CHROMOSOME_IV assembly_tag Finished 14318313 14318316 . + . Note "Left: Y67A10A" CHROMOSOME_IV assembly_tag Clone 14318313 14318317 . + . Note "left end: Y67A10" CHROMOSOME_IV assembly_tag Clone 14318313 14318318 . + . Note "left end: Y67A10\n" CHROMOSOME_IV assembly_tag Finished 14318413 14318416 . + . Note "Right: Y64G10A\n" CHROMOSOME_IV assembly_tag annotation 14328244 14328421 . + . Note "First select a Feature -\n[ ] Unsure\n[*] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[*] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSequence obtained from small insert library of single clone vm07d11" CHROMOSOME_IV assembly_tag Clone 14400256 14400259 . + . Note "left end: F55B11" CHROMOSOME_IV assembly_tag Finished 14400256 14400259 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14400256 14400259 . - . Note "left end: " CHROMOSOME_IV assembly_tag Finished 14400356 14400359 . - . Note "Right: Y67A10A" CHROMOSOME_IV assembly_tag annotation 14413783 14413792 . + . Note "run of Ts, some 9 some 10, edited\nto 10" CHROMOSOME_IV assembly_tag annotation 14429775 14429799 . + . Note "edited to 25 Ts" CHROMOSOME_IV assembly_tag Finished 14433511 14433514 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14433511 14433514 . + . Note "left end: LLC1" CHROMOSOME_IV assembly_tag Clone 14433511 14433514 . + . Note "left end: left end LLC1, C24C2 is redundant." CHROMOSOME_IV assembly_tag Finished 14433611 14433614 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14437304 14437307 . + . Note "right end: F55B11" CHROMOSOME_IV assembly_tag Clone 14450719 14450722 . + . Note "right end: C24C2 (redundant)" CHROMOSOME_IV assembly_tag Finished 14469330 14469333 . + . Note "Left: Y67A10B" CHROMOSOME_IV assembly_tag Clone 14469427 14469430 . + . Note "right end: LLC1" CHROMOSOME_IV assembly_tag Finished 14469427 14469430 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14471024 14471027 . + . Note "left end: Y57G11" CHROMOSOME_IV assembly_tag Finished 14471027 14471032 . + . Note "Left: Y57G11A" CHROMOSOME_IV assembly_tag Clone 14471027 14471032 . + . Note "left end: Y57G11" CHROMOSOME_IV assembly_tag Finished 14471124 14471127 . - . Note "Right: Y67A10B" CHROMOSOME_IV assembly_tag Clone 14500458 14500463 . + . Note "right end: Y67A10" CHROMOSOME_IV assembly_tag annotation 14503378 14503387 . + . Note "some clones have 9 T's and others have\n10 T's. Edited to 10 T's." CHROMOSOME_IV assembly_tag annotation 14510522 14510553 . + . CHROMOSOME_IV assembly_tag annotation 14510699 14510820 . + . Note "bases 39496 - 39528 and bases 39673 -\n39794 (in the inverted repeat region across bases 39310 - 39680) are covered by a single pUC18subclone which has been sonicated and re-subcloned into pUC18." CHROMOSOME_IV assembly_tag Clone 14517478 14517481 . + . Note "left end: T27E7" CHROMOSOME_IV assembly_tag Clone 14517478 14517481 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 14517478 14517481 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14517478 14517481 . + . Note "left end: T27E7" CHROMOSOME_IV assembly_tag Finished 14517578 14517581 . + . Note "Right: Y57G11A" CHROMOSOME_IV assembly_tag annotation 14525605 14525659 . - . Note "Single clone of vj80c5 sonicated PCR." CHROMOSOME_IV assembly_tag annotation 14525605 14525707 . - . Note "single clone of vj80c5 sonicated PCR." CHROMOSOME_IV assembly_tag Finished 14550334 14550337 . + . Note "Left: Y57G11B" CHROMOSOME_IV assembly_tag Clone 14550434 14550437 . + . Note "right end: T27E7" CHROMOSOME_IV assembly_tag Clone 14550434 14550437 . + . Note "right end: T27E7" CHROMOSOME_IV assembly_tag Finished 14550434 14550437 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14550434 14550437 . + . Note "right end: " CHROMOSOME_IV assembly_tag Finished 14599119 14599122 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14599119 14599122 . - . Note "right end: F13G11" CHROMOSOME_IV assembly_tag Clone 14599119 14599122 . - . Note "left end: F13G11\n" CHROMOSOME_IV assembly_tag Finished 14599219 14599222 . - . Note "Right: Y57G11B" CHROMOSOME_IV assembly_tag Finished 14637240 14637243 . + . Note "Left: Y57G11C" CHROMOSOME_IV assembly_tag Clone 14637340 14637343 . - . Note "left end: F13G11" CHROMOSOME_IV assembly_tag Finished 14637340 14637343 . - . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14637340 14637343 . - . Note "right end: F13G11" CHROMOSOME_IV assembly_tag annotation 14779373 14779602 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 14779603 14779976 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 14779977 14780245 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 14780246 14780434 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction dig" CHROMOSOME_IV assembly_tag annotation 14780873 14780874 . + . Note "GT missing from one template but \nconfirmed by others" CHROMOSOME_IV assembly_tag annotation 14780894 14780910 . + . Note "bases 309982 - 309998 are covered by\na single clone" CHROMOSOME_IV assembly_tag Clone 14891548 14891553 . + . Note "left end: Y41E3" CHROMOSOME_IV assembly_tag Clone 14923554 14923557 . + . Note "left end: F52D11" CHROMOSOME_IV assembly_tag Finished 14950709 14950712 . + . Note "Left: Y41E3" CHROMOSOME_IV assembly_tag Clone 14950807 14950812 . + . Note "right end: Y57G11" CHROMOSOME_IV assembly_tag Finished 14950807 14950812 . + . Note "Right: Y57G11C" CHROMOSOME_IV assembly_tag Clone 14950807 14950812 . + . Note "right end: Y57G11" CHROMOSOME_IV assembly_tag Clone 14964808 14964811 . + . Note "right end: F52D11" CHROMOSOME_IV assembly_tag annotation 15043787 15043816 . + . Note "single clone in inverted repeat region" CHROMOSOME_IV assembly_tag annotation 15043861 15043934 . + . Note "single clone in inverted repeat region.\nSequence confirmed by poor qualtiy\ndata" CHROMOSOME_IV assembly_tag annotation 15046980 15047098 . + . Note "sonicated pcr product in inverted repeat region" CHROMOSOME_IV assembly_tag annotation 15059044 15059111 . - . Note "single clone (bases 25792 - 25859).\nRegion confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 15059112 15059792 . + . Note "tandem repeat with typical repeat\nelement \nTTTTTCTAGAAAGTTCTGGAACATTCCAGAATTTTCTCGA (a 40mer)." CHROMOSOME_IV assembly_tag annotation 15059791 15060065 . + . Note "tandem repeat region with typical\nrepeat element TTTTTCTCAGAAAATTTAAATTTCCCGCCAAAATA (a 36mer).Size unconfirmed." CHROMOSOME_IV assembly_tag annotation 15060076 15060790 . + . Note "tandem repeat with typical repeat\nelement GGGTCTCACCACGAAGGATCTTACCACGAA\n(a 30 mer)." CHROMOSOME_IV assembly_tag annotation 15075766 15075782 . + . Note "single clone confirmed by poor quality\nread 4911" CHROMOSOME_IV assembly_tag annotation 15076352 15080135 . + . Note "tandem repeat with typical repeat \nelement TTTCCCGCTAAATTTTTTTTCACTGAAAATTTGAA (a 36mer). Size not confirmed." CHROMOSOME_IV assembly_tag annotation 15080980 15081013 . + . Note "single sonicated clone in inverted \nrepeat region." CHROMOSOME_IV assembly_tag annotation 15081119 15081469 . + . Note "tandem repeat with typical repeat\nelement GGCGGGAAATTCAAATTTTCAGTGAAAAAAAATTT (a 35mer)." CHROMOSOME_IV assembly_tag annotation 15090393 15090397 . + . Note "vo86a4 has TCTG but all other reads\nhave TCATG. Edited to TCATG." CHROMOSOME_IV assembly_tag Clone 15101246 15101249 . + . Note "left end: M199" CHROMOSOME_IV assembly_tag Finished 15101246 15101249 . - . Note "Left: M199" CHROMOSOME_IV assembly_tag Finished 15101346 15101349 . + . Note "Right: Y41E3" CHROMOSOME_IV assembly_tag Finished 15140325 15140328 . + . Note "Left: Y40H7A" CHROMOSOME_IV assembly_tag Clone 15140425 15140428 . + . Note "right end: M199" CHROMOSOME_IV assembly_tag Clone 15140425 15140428 . - . Note "left end: M199" CHROMOSOME_IV assembly_tag Finished 15140425 15140428 . - . Note "Right: M199" CHROMOSOME_IV assembly_tag annotation 15159734 15160355 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\norientation of inverted repeat loop is\nunknown" CHROMOSOME_IV assembly_tag annotation 15188494 15190983 . - . Note "tandem repeat, typical repeat element\nGGCGGGAAATTCAAGTTTTCTATGAAAAAAATATT\n(35-mer). Length of repeat is unknown." CHROMOSOME_IV assembly_tag annotation 15209053 15209194 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_IV assembly_tag annotation 15218304 15218420 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsingle sonicated pUC18 subclone in\ninverted repeat region" CHROMOSOME_IV assembly_tag annotation 15223155 15223850 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\norientation of loop in inverted repeat \nregion is unknown" CHROMOSOME_IV assembly_tag Clone 15226305 15226310 . + . Note "left end: Y73F8" CHROMOSOME_IV assembly_tag Finished 15226305 15226310 . + . Note "Left: Y73F8A" CHROMOSOME_IV assembly_tag Clone 15226305 15226310 . - . Note "left end: Y73F8" CHROMOSOME_IV assembly_tag Finished 15226407 15226410 . + . Note "Right: Y40H7A" CHROMOSOME_IV assembly_tag comment 15232615 15232618 . + . Note "?" CHROMOSOME_IV assembly_tag comment 15255378 15255381 . + . Note "?" CHROMOSOME_IV assembly_tag comment 15272148 15272151 . + . Note "?" CHROMOSOME_IV assembly_tag comment 15281520 15281521 . + . Note "?" CHROMOSOME_IV assembly_tag comment 15287281 15287283 . + . Note "?" CHROMOSOME_IV assembly_tag Clone 15328898 15328903 . + . Note "right end: Y40H7" CHROMOSOME_IV assembly_tag annotation 15359222 15359288 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_IV assembly_tag comment 15384538 15384548 . + . Note "chimeric clone" CHROMOSOME_IV assembly_tag comment 15384647 15384660 . - . Note "chimeric clone" CHROMOSOME_IV assembly_tag comment 15390012 15390018 . + . Note "?" CHROMOSOME_IV assembly_tag comment 15390157 15390160 . + . Note "?" CHROMOSOME_IV assembly_tag comment 15409426 15409440 . + . Note "start of match with 6823 --->" CHROMOSOME_IV assembly_tag comment 15409530 15409534 . + . Note "point at which #6823 diverges, suggesting that vx56e3 is chimeric " CHROMOSOME_IV assembly_tag annotation 15413046 15413052 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_IV assembly_tag annotation 15420063 15420612 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Loop of 4.4kb inverted repeat cannot be orientated as size of repeat exceeds subclone size. Length of loop 541bp." CHROMOSOME_IV assembly_tag comment 15432394 15432396 . + . Note "3 bases missing" CHROMOSOME_IV assembly_tag comment 15432988 15432990 . - . Note "?" CHROMOSOME_IV assembly_tag comment 15433698 15433701 . - . Note "?" CHROMOSOME_IV assembly_tag comment 15434203 15434209 . + . Note "vx56e3 prob chimeric" CHROMOSOME_IV assembly_tag comment 15434330 15434333 . + . Note "chimeric from this point" CHROMOSOME_IV assembly_tag annotation 15434338 15434438 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_IV assembly_tag comment 15434439 15434440 . + . Note "John's join" CHROMOSOME_IV assembly_tag annotation 15435573 15435588 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_IV assembly_tag annotation 15435589 15435713 . + . Note "First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [X] Other Add a comment here - single direction primer reads only." CHROMOSOME_IV assembly_tag comment 15445431 15445435 . - . Note "?" CHROMOSOME_IV assembly_tag comment 15446100 15446104 . - . Note "Previously thought this was chimeric because it diverged. When I moved it to the other side of the IR, the join was