##gff-version 2 ##date 2003-02-20 ##sequence-region CHROMOSOME_V 1 20922239 CHROMOSOME_V assembly_tag Clone 1 6 . + . Note "left end: cTel3X" CHROMOSOME_V assembly_tag Finished 1 6 . + . Note "Left: cTel3X" CHROMOSOME_V assembly_tag Clone 4858 4861 . + . Note "left end: B0348" CHROMOSOME_V assembly_tag Finished 4954 4957 . - . Note "Right: cTel3X" CHROMOSOME_V assembly_tag Finished 9459497 9459500 . + . Note "Left: F07D3" CHROMOSOME_V assembly_tag Clone 9459497 9459500 . + . Note "left end: Start of F07D3" CHROMOSOME_V assembly_tag annotation 9466540 9466583 . + . Note "Region (43bp) covered by good data from one clone only. However, poor cut-off data from 2 other clones confirm that this is cosmid sequence." CHROMOSOME_V assembly_tag Finished 9475252 9475255 . + . Note "Left: K06A4" CHROMOSOME_V assembly_tag Clone 9475252 9475255 . + . Note "left end: Start of K06A4" CHROMOSOME_V assembly_tag Clone 9475252 9475255 . + . Note "left end: BEGINNING OF K06A4" CHROMOSOME_V assembly_tag Finished 9475352 9475355 . + . Note "Right: F07D3" CHROMOSOME_V assembly_tag annotation 9485940 9486211 . + . Note "Region of inverted repeat : approx 135 bp in each element with no real unique loop. Several M13 clones seem to delete (or slippage occurs during cycle sequencing) in this region. Final sequence was from cosmid PCR. Size agrees with restriction digest data." CHROMOSOME_V assembly_tag Clone 9496852 9496855 . + . Note "right end: END OF F07D3" CHROMOSOME_V assembly_tag Clone 9509154 9509157 . + . Note "left end: F11A3" CHROMOSOME_V assembly_tag Finished 9509154 9509157 . + . Note "Left: F11A3" CHROMOSOME_V assembly_tag Clone 9509154 9509157 . + . Note "left end: BEGINNING OF F11A3" CHROMOSOME_V assembly_tag Finished 9509254 9509257 . + . Note "Right: K06A4" CHROMOSOME_V assembly_tag Clone 9514342 9514345 . + . Note "right end: K06A4" CHROMOSOME_V assembly_tag Clone 9517412 9517415 . + . Note "left end: C50F4" CHROMOSOME_V assembly_tag Finished 9517412 9517415 . + . Note "Left: C50F4" CHROMOSOME_V assembly_tag Clone 9517412 9517415 . + . Note "left end: C50F4" CHROMOSOME_V assembly_tag Finished 9517512 9517515 . + . Note "Right: F11A3" CHROMOSOME_V assembly_tag annotation 9518366 9518376 . + . Note "The majority of reads over this region showed 11 Ts. A single clone gave 12Ts." CHROMOSOME_V assembly_tag Clone 9548633 9548636 . + . Note "right end: F11A3" CHROMOSOME_V assembly_tag Clone 9553479 9553482 . + . Note "left end: Start of F25B3" CHROMOSOME_V assembly_tag Finished 9553479 9553482 . + . Note "Left: F25B3" CHROMOSOME_V assembly_tag Clone 9553479 9553482 . + . Note "left end: F25B3" CHROMOSOME_V assembly_tag Finished 9553579 9553582 . + . Note "Right: C50F4" CHROMOSOME_V assembly_tag Clone 9558285 9558288 . + . Note "right end: End of C50F4" CHROMOSOME_V assembly_tag Clone 9583557 9583560 . + . Note "left end: Beginning of K09G1" CHROMOSOME_V assembly_tag Clone 9583557 9583560 . + . Note "left end: BEGINNING OF K09G1" CHROMOSOME_V assembly_tag Finished 9583557 9583560 . + . Note "Left: K09G1" CHROMOSOME_V assembly_tag Finished 9583657 9583660 . + . Note "Right: F25B3" CHROMOSOME_V assembly_tag Clone 9594386 9594389 . + . Note "right end: END OF F25B3" CHROMOSOME_V assembly_tag annotation 9603641 9603659 . + . Note "One M13 clone clearly had 19 Cs,\nwhereas 3 other M13 clones had only\n17 Cs.\nSequence edited to 19Cs." CHROMOSOME_V assembly_tag annotation 9604514 9604850 . + . Note "Using evidence from restriction digest\nit is estimated that 200 bp are missing\nfrom this region of repeats of type \nRcD1 and Rc35.\n\n" CHROMOSOME_V assembly_tag annotation 9604514 9606061 . + . Note "Using evidence from restriction digest \nit is estimated that 200 bp are missing\nfrom this region of RcD1 and Rc35 \nrepeats." CHROMOSOME_V assembly_tag annotation 9606095 9606662 . + . CHROMOSOME_V assembly_tag Clone 9618110 9618113 . + . Note "left end: BEGINNING OF T06E4" CHROMOSOME_V assembly_tag Finished 9618110 9618113 . + . Note "Left: T06E4" CHROMOSOME_V assembly_tag Clone 9618110 9618113 . - . Note "left end: BEGINNING OF T06E4" CHROMOSOME_V assembly_tag Finished 9618210 9618213 . + . Note "Right: K09G1" CHROMOSOME_V assembly_tag Clone 9622655 9622658 . + . Note "right end: END OF K09G1" CHROMOSOME_V assembly_tag Finished 9656793 9656796 . + . Note "Left: B0331" CHROMOSOME_V assembly_tag Finished 9656879 9656882 . + . Note "Right: T06E4" CHROMOSOME_V assembly_tag Clone 9656879 9656882 . + . Note "right end: END OF T06E4" CHROMOSOME_V assembly_tag Clone 9656893 9656896 . + . Note "right end: ZK287" CHROMOSOME_V assembly_tag Clone 9665663 9665666 . + . Note "left end: ZK287" CHROMOSOME_V assembly_tag Finished 9665663 9665666 . + . Note "Left: ZK287" CHROMOSOME_V assembly_tag Clone 9665663 9665666 . + . Note "left end: ZK287" CHROMOSOME_V assembly_tag Finished 9665762 9665765 . + . Note "Right: B0331" CHROMOSOME_V assembly_tag Clone 9705433 9705436 . + . Note "left end: Start of F40F9" CHROMOSOME_V assembly_tag Finished 9705433 9705436 . + . Note "Left: F40F9" CHROMOSOME_V assembly_tag Clone 9705433 9705436 . + . Note "left end: F40F9" CHROMOSOME_V assembly_tag Finished 9705533 9705536 . + . Note "Right: ZK287" CHROMOSOME_V assembly_tag Clone 9706598 9706601 . + . Note "right end: End of ZK287" CHROMOSOME_V assembly_tag Clone 9741341 9741344 . + . Note "left end: Start of F58E6" CHROMOSOME_V assembly_tag Finished 9741341 9741344 . + . Note "Left: F58E6" CHROMOSOME_V assembly_tag Clone 9741341 9741344 . + . Note "left end: F58E6" CHROMOSOME_V assembly_tag Finished 9741441 9741444 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 9746509 9746512 . + . Note "right end: F40F9" CHROMOSOME_V assembly_tag Clone 9771560 9771563 . + . Note "left end: F46B6" CHROMOSOME_V assembly_tag Stolen 9771560 9771563 . + . Note "Read: " CHROMOSOME_V assembly_tag Finished 9771560 9771563 . + . Note "Left: F46B6" CHROMOSOME_V assembly_tag Clone 9771560 9771563 . + . Note "left end: F46B6" CHROMOSOME_V assembly_tag Finished 9771660 9771663 . + . Note "Right: F58E6" CHROMOSOME_V assembly_tag Clone 9783902 9783905 . + . Note "right end: F58E6" CHROMOSOME_V assembly_tag Finished 9808072 9808075 . + . Note "Left: C50C10" CHROMOSOME_V assembly_tag Clone 9808172 9808175 . + . Note "right end: F46B6" CHROMOSOME_V assembly_tag Finished 9808172 9808175 . + . Note "Right: F46B6" CHROMOSOME_V assembly_tag Clone 9808172 9808175 . + . Note "right end: F46B6" CHROMOSOME_V assembly_tag Finished 9830482 9830487 . + . Note "Left: R07B5" CHROMOSOME_V assembly_tag Clone 9830482 9830487 . + . Note "left end: R07B5" CHROMOSOME_V assembly_tag Clone 9830482 9830487 . + . Note "left end: Start of R07B5" CHROMOSOME_V assembly_tag Finished 9830584 9830587 . + . Note "Right: C50C10" CHROMOSOME_V assembly_tag Clone 9839609 9839612 . + . Note "right end: End of C50C10" CHROMOSOME_V assembly_tag Finished 9857632 9857635 . + . Note "Left: T11A5" CHROMOSOME_V assembly_tag Clone 9857632 9857635 . + . Note "left end: T11A5" CHROMOSOME_V assembly_tag Clone 9857632 9857635 . + . Note "left end: Start of T11A5" CHROMOSOME_V assembly_tag Finished 9857732 9857735 . + . Note "Right: R07B5" CHROMOSOME_V assembly_tag annotation 9857826 9857826 . + . Note "A single clone had a T in this position All other reads clearly showed an A" CHROMOSOME_V assembly_tag Finished 9888162 9888165 . + . Note "Left: C50H2" CHROMOSOME_V assembly_tag Clone 9888162 9888165 . + . Note "left end: C50H2" CHROMOSOME_V assembly_tag Clone 9888162 9888165 . + . Note "left end: C50H2" CHROMOSOME_V assembly_tag Finished 9888262 9888265 . + . Note "Right: T11A5" CHROMOSOME_V assembly_tag Clone 9895024 9895027 . + . Note "right end: T11A5" CHROMOSOME_V assembly_tag Clone 9929420 9929420 . + . Note "right end: C50H2" CHROMOSOME_V assembly_tag Clone 9929455 9929458 . + . Note "left end: C50H2/T07C12 gap" CHROMOSOME_V assembly_tag Finished 9929455 9929458 . + . Note "Left: VC50H2R" CHROMOSOME_V assembly_tag Finished 9929555 9929558 . + . Note "Right: C50H2" CHROMOSOME_V assembly_tag Clone 9929555 9929558 . + . Note "right end: C50H2" CHROMOSOME_V assembly_tag Clone 9929555 9929558 . - . Note "right end: \nThis GATC site is the right hand end of\nC50H2." CHROMOSOME_V assembly_tag Finished 9931549 9931552 . + . Note "Left: T07C12" CHROMOSOME_V assembly_tag Clone 9931549 9931552 . - . Note "left end: T07C12" CHROMOSOME_V assembly_tag Finished 9931595 9931598 . + . Note "Right: VC50H2R" CHROMOSOME_V assembly_tag Finished 9964927 9964930 . + . Note "Left: C27H6" CHROMOSOME_V assembly_tag Finished 9965027 9965030 . + . Note "Right: T07C12" CHROMOSOME_V assembly_tag Clone 9965027 9965030 . - . Note "right end: End of T07C12" CHROMOSOME_V assembly_tag annotation 9983599 9983599 . + . Note "Unclear G\n" CHROMOSOME_V assembly_tag Finished 9989598 9989601 . + . Note "Left: K08H10" CHROMOSOME_V assembly_tag Clone 9989598 9989601 . + . Note "left end: K08H10" CHROMOSOME_V assembly_tag Clone 9989598 9989601 . - . Note "left end: Beginning of K08H10" CHROMOSOME_V assembly_tag Finished 9989698 9989701 . + . Note "Right: C27H6" CHROMOSOME_V assembly_tag Clone 10000384 10000387 . + . Note "right end: C27H6" CHROMOSOME_V assembly_tag Clone 10022587 10022590 . + . Note "left end: T06E8" CHROMOSOME_V assembly_tag Finished 10028830 10028833 . + . Note "Left: T06E8" CHROMOSOME_V assembly_tag Clone 10028933 10028936 . + . Note "right end: END OF K08H10" CHROMOSOME_V assembly_tag Finished 10028933 10028936 . + . Note "Right: K08H10" CHROMOSOME_V assembly_tag Clone 10028933 10028936 . - . Note "right end: K08H10" CHROMOSOME_V assembly_tag Finished 10048204 10048207 . + . Note "Left: F57A8" CHROMOSOME_V assembly_tag Clone 10048204 10048207 . + . Note "left end: F57A8" CHROMOSOME_V assembly_tag Clone 10048204 10048207 . + . Note "left end: START OF F57A8" CHROMOSOME_V assembly_tag Finished 10048304 10048307 . + . Note "Right: T06E8" CHROMOSOME_V assembly_tag Clone 10078992 10078997 . + . Note "left end: R04B5" CHROMOSOME_V assembly_tag Finished 10078992 10078997 . + . Note "Left: R04B5" CHROMOSOME_V assembly_tag Clone 10078992 10078997 . + . Note "left end: START OF R04B5" CHROMOSOME_V assembly_tag Finished 10079094 10079097 . + . Note "Right: F57A8" CHROMOSOME_V assembly_tag Clone 10085992 10085995 . + . Note "right end: END OF F57A8" CHROMOSOME_V assembly_tag Clone 10103913 10103916 . + . Note "left end: Start of C08B6" CHROMOSOME_V assembly_tag Finished 10103913 10103916 . + . Note "Left: C08B6" CHROMOSOME_V assembly_tag Clone 10103913 10103916 . + . Note "left end: START OF C08B6" CHROMOSOME_V assembly_tag Finished 10104013 10104016 . + . Note "Right: R04B5" CHROMOSOME_V assembly_tag annotation 10115832 10115832 . + . CHROMOSOME_V assembly_tag Clone 10116347 10116352 . + . Note "right end: End of R04B5" CHROMOSOME_V assembly_tag Finished 10146899 10146902 . + . Note "Left: C51E3" CHROMOSOME_V assembly_tag Finished 10146999 10147002 . + . Note "Right: C08B6" CHROMOSOME_V assembly_tag Clone 10146999 10147002 . + . Note "right end: END OF C08B6" CHROMOSOME_V assembly_tag Clone 10146999 10147002 . + . Note "right end: End of C08B6" CHROMOSOME_V assembly_tag Clone 10179356 10179359 . + . Note "left end: START OF ZK856" CHROMOSOME_V assembly_tag Finished 10179356 10179359 . + . Note "Left: ZK856" CHROMOSOME_V assembly_tag Finished 10179456 10179459 . + . Note "Right: C51E3" CHROMOSOME_V assembly_tag Finished 10220754 10220757 . + . Note "Left: C12D8" CHROMOSOME_V assembly_tag Finished 10220854 10220857 . + . Note "Right: ZK856" CHROMOSOME_V assembly_tag Clone 10220854 10220857 . + . Note "right end: ZK856" CHROMOSOME_V assembly_tag annotation 10243030 10243031 . + . Note "4 walks from 4 different M13 subclones cover this region. The 2 negative reads clearly show CT in this position but these bases are missing from the 2 positive reads." CHROMOSOME_V assembly_tag annotation 10248116 10248136 . + . Note "probably 21 C's" CHROMOSOME_V assembly_tag Finished 10256670 10256673 . + . Note "Left: Y22F5A" CHROMOSOME_V assembly_tag Clone 10256770 10256773 . + . Note "right end: C12D8" CHROMOSOME_V assembly_tag Clone 10256770 10256773 . + . Note "right end: C12D8 probably" CHROMOSOME_V assembly_tag Finished 10256770 10256773 . + . Note "Right: C12D8" CHROMOSOME_V assembly_tag Finished 10289157 10289160 . + . Note "Left: B0024" CHROMOSOME_V assembly_tag Clone 10289157 10289160 . + . Note "left end: B0024" CHROMOSOME_V assembly_tag Finished 10289254 10289257 . + . Note "Right: Y22F5A" CHROMOSOME_V assembly_tag Finished 10331210 10331213 . + . Note "Left: Y22F5B" CHROMOSOME_V assembly_tag Finished 10331307 10331310 . + . Note "Right: B0024" CHROMOSOME_V assembly_tag Clone 10331307 10331310 . + . Note "right end: B0024" CHROMOSOME_V assembly_tag Clone 10333231 10333234 . + . Note "left end: K07C5" CHROMOSOME_V assembly_tag Clone 10333231 10333234 . + . Note "left end: K07C5" CHROMOSOME_V assembly_tag Finished 10333231 10333234 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 10333328 10333331 . + . Note "Right: Y22F5B" CHROMOSOME_V assembly_tag annotation 10358267 10358268 . + . Note "One M13 clone had 2 Gs missing here." CHROMOSOME_V assembly_tag annotation 10363305 10363305 . + . Note "One M13 clone had a G in this position, rather than an A (8 other clones)." CHROMOSOME_V assembly_tag Clone 10365636 10365639 . + . Note "left end: AC3" CHROMOSOME_V assembly_tag Finished 10365636 10365639 . + . Note "Left: AC3" CHROMOSOME_V assembly_tag Clone 10365636 10365639 . + . Note "left end: AC3" CHROMOSOME_V assembly_tag Finished 10365736 10365739 . + . Note "Right: K07C5" CHROMOSOME_V assembly_tag Clone 10371147 10371150 . + . Note "right end: K07C5" CHROMOSOME_V assembly_tag Finished 10404484 10404487 . + . Note "Left: F15H10" CHROMOSOME_V assembly_tag Clone 10404584 10404587 . + . Note "right end: End of AC3" CHROMOSOME_V assembly_tag Finished 10404584 10404587 . + . Note "Right: AC3" CHROMOSOME_V assembly_tag Clone 10404584 10404587 . + . Note "right end: AC3" CHROMOSOME_V assembly_tag annotation 10415230 10415230 . + . Note "A single M13 clone had a G in this position. All other reads (10) have A." CHROMOSOME_V assembly_tag Finished 10429883 10429886 . + . Note "Left: Y32F6A" CHROMOSOME_V assembly_tag Clone 10429983 10429986 . + . Note "right end: End of F15H10" CHROMOSOME_V assembly_tag Finished 10429983 10429986 . + . Note "Right: F15H10" CHROMOSOME_V assembly_tag Clone 10429983 10429986 . - . Note "right end: F15H10\n\n\n\n" CHROMOSOME_V assembly_tag Clone 10442750 10442753 . + . Note "left end: F22E12" CHROMOSOME_V assembly_tag annotation 10452016 10453533 . + . Note "This region contins two tandem repeats the assembly of which was confirmed with a resctriction digest of the YAC. 51 copies of 25bp repeat and 21 copies of a 11bp repeat." CHROMOSOME_V assembly_tag Finished 10457005 10457008 . - . Note "Left: F22E12" CHROMOSOME_V assembly_tag Clone 10457105 10457108 . + . Note "right end: K07H11" CHROMOSOME_V assembly_tag Finished 10457115 10457118 . + . Note "Right: Y32F6A" CHROMOSOME_V assembly_tag annotation 10469933 10469933 . + . Note "A single M13 clone had an A in this\nposition rather than a G (7 other\nclones)" CHROMOSOME_V assembly_tag Finished 10473592 10473595 . + . Note "Left: Y32F6B" CHROMOSOME_V assembly_tag Clone 10473692 10473695 . + . Note "right end: F22E12" CHROMOSOME_V assembly_tag Finished 10473692 10473695 . - . Note "Right: F22E12\n" CHROMOSOME_V assembly_tag Clone 10473692 10473695 . - . Note "right end: F22E12\n" CHROMOSOME_V assembly_tag Clone 10490259 10490262 . + . Note "left end: C35A5" CHROMOSOME_V assembly_tag Clone 10490259 10490262 . + . Note "left end: C35A5" CHROMOSOME_V assembly_tag Finished 10490259 10490262 . + . Note "Left: C35A5" CHROMOSOME_V assembly_tag Finished 10490359 10490362 . + . Note "Right: Y32F6B" CHROMOSOME_V assembly_tag Finished 10532186 10532188 . + . Note "Left: F25D1" CHROMOSOME_V assembly_tag Finished 10532286 10532289 . + . Note "Right: C35A5" CHROMOSOME_V assembly_tag Clone 10532286 10532289 . + . Note "right end: C35A5" CHROMOSOME_V assembly_tag Clone 10532286 10532289 . + . Note "right end: C35A5" CHROMOSOME_V assembly_tag Finished 10550029 10550032 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 10550029 10550032 . + . Note "left end: F32G8" CHROMOSOME_V assembly_tag Clone 10550029 10550032 . + . Note "left end: f32g8" CHROMOSOME_V assembly_tag Finished 10550129 10550132 . + . Note "Right: F25D1" CHROMOSOME_V assembly_tag Clone 10568800 10568803 . + . Note "left end: T21C9" CHROMOSOME_V assembly_tag Finished 10568800 10568803 . + . Note "Left: T21C9" CHROMOSOME_V assembly_tag Clone 10568800 10568803 . + . Note "left end: T21C9" CHROMOSOME_V assembly_tag Finished 10568901 10568904 . + . Note "Right: F32G8" CHROMOSOME_V assembly_tag Clone 10586052 10586055 . + . Note "right end: F32G8" CHROMOSOME_V assembly_tag Finished 10606241 10606244 . + . Note "Left: H27A22" CHROMOSOME_V assembly_tag Clone 10606341 10606344 . + . Note "right end: T21C9" CHROMOSOME_V assembly_tag Clone 10606341 10606344 . + . Note "right end: T21C9" CHROMOSOME_V assembly_tag Finished 10606341 10606344 . + . Note "Right: T21C9" CHROMOSOME_V assembly_tag Finished 10607508 10607511 . + . Note "Left: Y24E3A" CHROMOSOME_V assembly_tag Clone 10607605 10607608 . + . Note "right end: H27A22" CHROMOSOME_V assembly_tag Clone 10607605 10607608 . + . Note "right end: H27A22" CHROMOSOME_V assembly_tag Finished 10607605 10607608 . + . Note "Right: H27A22" CHROMOSOME_V assembly_tag annotation 10608306 10608323 . + . Note "The size of the YAC is consistent with\nthe digest but the tandem repeat may \nnot be completely assembled correctly.\n39 bases tandem repeat " CHROMOSOME_V assembly_tag Finished 10615213 10615216 . + . Note "Left: H09F14" CHROMOSOME_V assembly_tag Clone 10615213 10615216 . + . Note "left end: H09F14" CHROMOSOME_V assembly_tag Finished 10615313 10615316 . + . Note "Right: Y24E3A" CHROMOSOME_V assembly_tag annotation 10616338 10616907 . + . Note "bases 7948 - 8517 are covered by a\nsonicated pcr product from the fosmid\ndna.\nSize confirmed by restriction digest." CHROMOSOME_V assembly_tag annotation 10620392 10620425 . + . Note "single clone across bases 12002 - 12035.\nSize confirmed by restriction digest." CHROMOSOME_V assembly_tag annotation 10623781 10623915 . + . Note "single clone across bases 15391 - 15525\nregion confirmed by restriction digest" CHROMOSOME_V assembly_tag Finished 10626060 10626063 . + . Note "Left: C32C4" CHROMOSOME_V assembly_tag Clone 10626060 10626063 . + . Note "left end: C32C4" CHROMOSOME_V assembly_tag Clone 10626060 10626063 . + . Note "left end: C32C4" CHROMOSOME_V assembly_tag Finished 10626160 10626163 . + . Note "Right: H09F14" CHROMOSOME_V assembly_tag Clone 10657742 10657745 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 10657742 10657745 . + . Note "left end: F29F11" CHROMOSOME_V assembly_tag Finished 10657742 10657745 . + . Note "Left: F29F11" CHROMOSOME_V assembly_tag Clone 10657742 10657745 . + . Note "left end: F29F11" CHROMOSOME_V assembly_tag Finished 10657842 10657845 . + . Note "Right: C32C4" CHROMOSOME_V assembly_tag Finished 10693896 10693899 . + . Note "Left: C05A2" CHROMOSOME_V assembly_tag Clone 10693996 10693999 . + . Note "right end: F29F11" CHROMOSOME_V assembly_tag Finished 10693996 10693999 . + . Note "Right: F29F11" CHROMOSOME_V assembly_tag Clone 10693996 10693999 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 10693996 10693999 . + . Note "right end: F29F11" CHROMOSOME_V assembly_tag Clone 10706301 10706304 . + . Note "left end: T28B11" CHROMOSOME_V assembly_tag Finished 10706301 10706304 . + . Note "Left: T28B11" CHROMOSOME_V assembly_tag Clone 10706301 10706304 . + . Note "left end: T28B11" CHROMOSOME_V assembly_tag Finished 10706401 10706404 . + . Note "Right: C05A2" CHROMOSOME_V assembly_tag comment 10718034 10718035 . - . Note "?" CHROMOSOME_V assembly_tag Finished 10730844 10730847 . + . Note "Left: ZC302" CHROMOSOME_V assembly_tag Finished 10730844 10730847 . + . Note "Left: ZC302" CHROMOSOME_V assembly_tag Clone 10730944 10730949 . + . Note "left end: Start of ZC302" CHROMOSOME_V assembly_tag Clone 10730944 10730949 . + . Note "left end: ZC302" CHROMOSOME_V assembly_tag Finished 10731046 10731049 . + . Note "Right: T28B11" CHROMOSOME_V assembly_tag Finished 10731046 10731049 . + . Note "Right: T28B11" CHROMOSOME_V assembly_tag Clone 10743191 10743194 . + . Note "left end: Start of F28H7" CHROMOSOME_V assembly_tag Clone 10743191 10743194 . + . Note "left end: Start of F28H7" CHROMOSOME_V assembly_tag Finished 10743191 10743194 . + . Note "Left: F28H7" CHROMOSOME_V assembly_tag Clone 10743191 10743194 . + . Note "left end: F28H7" CHROMOSOME_V assembly_tag Finished 10743291 10743294 . + . Note "Right: ZC302" CHROMOSOME_V assembly_tag Clone 10748130 10748133 . + . Note "right end: End of T28B11" CHROMOSOME_V assembly_tag Clone 10769454 10769459 . + . Note "right end: End of ZC302" CHROMOSOME_V assembly_tag Clone 10770487 10770490 . + . Note "left end: Start of D1054" CHROMOSOME_V assembly_tag Clone 10770487 10770490 . + . Note "left end: D1054" CHROMOSOME_V assembly_tag Finished 10770487 10770490 . + . Note "Left: D1054" CHROMOSOME_V assembly_tag Finished 10770587 10770590 . + . Note "Right: F28H7" CHROMOSOME_V assembly_tag Clone 10783403 10783406 . + . Note "right end: F28H7" CHROMOSOME_V assembly_tag Clone 10809598 10809601 . + . Note "left end: C29A12" CHROMOSOME_V assembly_tag Finished 10809598 10809601 . + . Note "Left: C29A12" CHROMOSOME_V assembly_tag Clone 10809598 10809601 . + . Note "left end: Start of C29A12" CHROMOSOME_V assembly_tag Finished 10809698 10809701 . + . Note "Right: D1054" CHROMOSOME_V assembly_tag Clone 10814595 10814598 . + . Note "right end: End of D1054" CHROMOSOME_V assembly_tag Finished 10850900 10850903 . + . Note "Left: F53H10" CHROMOSOME_V assembly_tag Finished 10851000 10851003 . + . Note "Right: C29A12" CHROMOSOME_V assembly_tag Clone 10851000 10851003 . + . Note "right end: End of C29A12" CHROMOSOME_V assembly_tag Clone 10851000 10851003 . + . Note "right end: END OF C29A12" CHROMOSOME_V assembly_tag Clone 10873709 10873711 . + . Note "left end: Start of F32D8" CHROMOSOME_V assembly_tag Clone 10873709 10873711 . + . Note "left end: Start of F32D8" CHROMOSOME_V assembly_tag Finished 10873709 10873712 . + . Note "Left: F32D8" CHROMOSOME_V assembly_tag Clone 10873712 10873712 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 10873712 10873712 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 10873812 10873815 . + . Note "Right: F53H10" CHROMOSOME_V assembly_tag Clone 10899574 10899577 . + . Note "left end: START OF C13D6" CHROMOSOME_V assembly_tag Finished 10913121 10913124 . + . Note "Left: F58B4" CHROMOSOME_V assembly_tag comment 10913121 10913151 . + . Note "START HERE!!!!!" CHROMOSOME_V assembly_tag Clone 10913224 10913227 . + . Note "right end: End of F32D8" CHROMOSOME_V assembly_tag Finished 10913224 10913227 . + . Note "Right: F32D8" CHROMOSOME_V assembly_tag Clone 10913224 10913227 . + . Note "right end: END OF F32D8" CHROMOSOME_V assembly_tag Clone 10936878 10936881 . + . Note "left end: F17C11" CHROMOSOME_V assembly_tag Clone 10936878 10936881 . + . Note "left end: START OF F17C11" CHROMOSOME_V assembly_tag Finished 10936878 10936881 . + . Note "Left: F17C11" CHROMOSOME_V assembly_tag Finished 10936978 10936981 . + . Note "Right: F58B4" CHROMOSOME_V assembly_tag Finished 10973811 10973814 . + . Note "Left: F53B7" CHROMOSOME_V assembly_tag Clone 10973811 10973814 . + . Note "left end: F53B7" CHROMOSOME_V assembly_tag Clone 10973811 10973814 . + . Note "left end: F53B7" CHROMOSOME_V assembly_tag Finished 10973911 10973914 . + . Note "Right: F17C11" CHROMOSOME_V assembly_tag Clone 10982353 10982356 . + . Note "right end: F17C11" CHROMOSOME_V assembly_tag Finished 11009662 11009665 . + . Note "Left: C13G3" CHROMOSOME_V assembly_tag Clone 11009762 11009765 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 11009762 11009765 . + . Note "Right: F53B7" CHROMOSOME_V assembly_tag Clone 11009762 11009765 . + . Note "right end: F53B7" CHROMOSOME_V assembly_tag Clone 11039297 11039300 . + . Note "left end: C45B11" CHROMOSOME_V assembly_tag Clone 11039297 11039300 . + . Note "left end: C45B11" CHROMOSOME_V assembly_tag Finished 11039297 11039300 . + . Note "Left: C45B11" CHROMOSOME_V assembly_tag Finished 11039397 11039400 . + . Note "Right: C13G3" CHROMOSOME_V assembly_tag annotation 11047004 11047009 . + . Note "A single M13 read across this region has an extra GT in this position, GAGTGTGTC. All other M13 reads (8) have the sequence GAGTGTC." CHROMOSOME_V assembly_tag Clone 11047739 11047742 . + . Note "right end: C13G3" CHROMOSOME_V assembly_tag Clone 11054682 11054685 . + . Note "left end: T04C12" CHROMOSOME_V assembly_tag Finished 11054682 11054685 . + . Note "Left: T04C12" CHROMOSOME_V assembly_tag Clone 11054682 11054685 . + . Note "left end: T04C12" CHROMOSOME_V assembly_tag Finished 11054782 11054785 . + . Note "Right: C45B11" CHROMOSOME_V assembly_tag Clone 11084269 11084272 . + . Note "right end: C45B11" CHROMOSOME_V assembly_tag annotation 11085925 11085985 . + . Note "single sub-clone across bases 31244 -\n31304. Confirmed by restriction digest " CHROMOSOME_V assembly_tag Finished 11089899 11089902 . + . Note "Right: T04C12" CHROMOSOME_V assembly_tag Clone 11089899 11089902 . + . Note "right end: T04C12" CHROMOSOME_V assembly_tag Finished 11112251 11112254 . + . Note "Left: H19N07" CHROMOSOME_V assembly_tag Clone 11112251 11112254 . + . Note "left end: H19N07" CHROMOSOME_V assembly_tag Clone 11124114 11124117 . + . Note "left end: C06H2" CHROMOSOME_V assembly_tag Finished 11124114 11124117 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11124114 11124117 . + . Note "left end: C06H2" CHROMOSOME_V assembly_tag Finished 11124213 11124216 . - . Note "Right: H19N07" CHROMOSOME_V assembly_tag Finished 11148296 11148299 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11148296 11148299 . + . Note "left end: T19C4" CHROMOSOME_V assembly_tag Clone 11148296 11148299 . + . Note "left end: T19C4" CHROMOSOME_V assembly_tag Finished 11148389 11148394 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 11167864 11167878 . + . Note "Polymorphic run of C's, T19C4 calls 15, C06H2 16." CHROMOSOME_V assembly_tag annotation 11168183 11168183 . + . Note "one clone reads 4 Ts. possible clone mutation" CHROMOSOME_V assembly_tag Clone 11169431 11169434 . + . Note "right end: ?C06H2" CHROMOSOME_V assembly_tag annotation 11181020 11181024 . + . Note "Put in 5 T's... One read wv70f3.s1 and .s1t says 6 T's." CHROMOSOME_V assembly_tag Finished 11182298 11182302 . + . Note "Left: VK10D6R" CHROMOSOME_V assembly_tag Finished 11182398 11182401 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11182398 11182401 . + . Note "right end: T19C4" CHROMOSOME_V assembly_tag Clone 11182398 11182401 . - . Note "right end: T19C4" CHROMOSOME_V assembly_tag annotation 11183027 11183027 . + . Note "Could be either a G or an A" CHROMOSOME_V assembly_tag Clone 11190394 11190397 . + . Note "left end: K10D6" CHROMOSOME_V assembly_tag Finished 11190394 11190397 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11190394 11190397 . + . Note "left end: K10D6" CHROMOSOME_V assembly_tag Finished 11190498 11190501 . - . Note "Right: VK10D6R" CHROMOSOME_V assembly_tag Clone 11220781 11220784 . + . Note "left end: T19B10" CHROMOSOME_V assembly_tag Clone 11220781 11220784 . + . Note "left end: T19B10" CHROMOSOME_V assembly_tag Finished 11220781 11220784 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11220884 11220887 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 11254708 11254711 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11254708 11254711 . + . Note "left end: F07B10" CHROMOSOME_V assembly_tag Clone 11256665 11256668 . + . Note "right end: T19B10" CHROMOSOME_V assembly_tag Finished 11256665 11256668 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11256665 11256668 . - . Note "right end: T19B10" CHROMOSOME_V assembly_tag Clone 11272206 11272209 . + . Note "left end: C03E10" CHROMOSOME_V assembly_tag Clone 11272206 11272209 . + . Note "left end: C03E10" CHROMOSOME_V assembly_tag Finished 11272206 11272209 . + . Note "Left: C03E10" CHROMOSOME_V assembly_tag Finished 11272305 11272309 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11287374 11287377 . - . Note "right end: F07B10" CHROMOSOME_V assembly_tag annotation 11289025 11289025 . + . Note "single clone reads CC another reads CCC\n\nrewrite!!!" CHROMOSOME_V assembly_tag Clone 11296334 11296337 . + . Note "left end: T03F7" CHROMOSOME_V assembly_tag Finished 11296334 11296338 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11296431 11296437 . - . Note "Right: C03E10" CHROMOSOME_V assembly_tag Clone 11315764 11315767 . + . Note "right end: End of C03E10" CHROMOSOME_V assembly_tag Clone 11317594 11317597 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 11317594 11317597 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11317594 11317597 . + . Note "left end: F47G9" CHROMOSOME_V assembly_tag Finished 11317694 11317699 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11328421 11328425 . + . Note "right end: T03F7" CHROMOSOME_V assembly_tag Finished 11336059 11336062 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11336059 11336062 . + . Note "left end: T02E9" CHROMOSOME_V assembly_tag Clone 11336059 11336062 . + . Note "left end: T02E9" CHROMOSOME_V assembly_tag Finished 11336161 11336165 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11352222 11352225 . - . Note "right end: F47G9" CHROMOSOME_V assembly_tag Clone 11370214 11370217 . + . Note "left end: F55C10" CHROMOSOME_V assembly_tag Clone 11370214 11370217 . + . Note "left end: F55C10" CHROMOSOME_V assembly_tag Finished 11370214 11370217 . + . Note "Left: F55C10" CHROMOSOME_V assembly_tag Finished 11370316 11370321 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11371271 11371274 . - . Note "right end: T02E9" CHROMOSOME_V assembly_tag annotation 11388726 11388726 . + . Note "Apparent mutation during cosmid growth.Subsequent colony pooling gives G/A \nhere" CHROMOSOME_V assembly_tag annotation 11391483 11392071 . - . Note "Digest suggests this repeated area between 26399 & 27372 should be about 1kb\nlonger.The digest was done on cosmid\nDNA using Ava1 and BamH1 enzymes " CHROMOSOME_V assembly_tag annotation 11392072 11392072 . + . CHROMOSOME_V assembly_tag annotation 11392073 11392130 . - . Note "Digest suggests this repeated area between 26399 & 27372 should be about 1kb\nlonger.The digest was done on cosmid\nDNA using Ava1 and BamH1 enzymes" CHROMOSOME_V assembly_tag Clone 11392262 11392265 . + . Note "left end: K03B8" CHROMOSOME_V assembly_tag Finished 11392262 11392265 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11392262 11392265 . + . Note "left end: K03B8" CHROMOSOME_V assembly_tag annotation 11392134 11392364 . - . Note "Digest suggests this repeated area between 26399 & 27372 should be about 1kb\nlonger.The digest was done on cosmid DNA using Ava1 and BamH1 enzymes" CHROMOSOME_V assembly_tag Finished 11392361 11392364 . - . Note "Right: F55C10" CHROMOSOME_V assembly_tag Clone 11409392 11409395 . + . Note "right end: F55C10" CHROMOSOME_V assembly_tag Finished 11421284 11421287 . + . Note "Left: T26H10" CHROMOSOME_V assembly_tag Clone 11421284 11421287 . + . Note "left end: T26H10" CHROMOSOME_V assembly_tag Clone 11421284 11421287 . + . Note "left end: T26H10" CHROMOSOME_V assembly_tag Finished 11421389 11421393 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11431741 11431744 . + . Note "right end: K03B8" CHROMOSOME_V assembly_tag Clone 11437167 11437170 . + . Note "left end: Left Hand End F57B7" CHROMOSOME_V assembly_tag Finished 11437167 11437170 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11437167 11437170 . + . Note "left end: F57B7" CHROMOSOME_V assembly_tag Finished 11437270 11437273 . + . Note "Right: T26H10" CHROMOSOME_V assembly_tag Clone 11457261 11457264 . + . Note "right end: Right Hand End T26H10" CHROMOSOME_V assembly_tag Finished 11460598 11460601 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11460598 11460601 . + . Note "left end: Left Hand End T11F9" CHROMOSOME_V assembly_tag Clone 11460598 11460601 . + . Note "left end: T11F9" CHROMOSOME_V assembly_tag Finished 11460699 11460702 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11475751 11475754 . + . Note "right end: F57B7" CHROMOSOME_V assembly_tag Finished 11498212 11498215 . + . Note "Left: H21M04" CHROMOSOME_V assembly_tag Finished 11498308 11498311 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11498308 11498311 . + . Note "right end: T11F9" CHROMOSOME_V assembly_tag Clone 11498308 11498311 . - . Note "right end: T11F9" CHROMOSOME_V assembly_tag Clone 11499990 11499993 . + . Note "left end: C55A6" CHROMOSOME_V assembly_tag Clone 11499990 11499993 . + . Note "left end: C55A6" CHROMOSOME_V assembly_tag Finished 11499990 11499993 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11500086 11500089 . - . Note "Right: H21M04" CHROMOSOME_V assembly_tag annotation 11506629 11506780 . + . Note "single phagemid clone confirmed by \ndigest with HindIII and PvuI" CHROMOSOME_V assembly_tag annotation 11507727 11507728 . + . Note "bases unclear" CHROMOSOME_V assembly_tag annotation 11507736 11507736 . + . Note "there may be no base here -\njust CCCCGAG" CHROMOSOME_V assembly_tag Clone 11529667 11529670 . + . Note "left end: Left Hand End F38B7" CHROMOSOME_V assembly_tag Finished 11529667 11529670 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11529667 11529670 . + . Note "left end: F38B7" CHROMOSOME_V assembly_tag Finished 11529768 11529775 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11543181 11543184 . + . Note "right end: Right Hand End C55A6" CHROMOSOME_V assembly_tag Finished 11569684 11569687 . + . Note "Left: H12C20" CHROMOSOME_V assembly_tag Finished 11569780 11569783 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11569780 11569783 . + . Note "right end: Right Hand End F38B7" CHROMOSOME_V assembly_tag Clone 11569780 11569783 . - . Note "right end: F38B7" CHROMOSOME_V assembly_tag annotation 11577145 11577274 . + . Note "[ ] Tandem repeat \n[x] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_V assembly_tag annotation 11581326 11581348 . + . Note "[ ] Tandem repeat \n[x] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_V assembly_tag Finished 11585700 11585703 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11585700 11585703 . + . Note "left end: F43A11" CHROMOSOME_V assembly_tag Clone 11585700 11585703 . + . Note "left end: Left Hand End F43A11" CHROMOSOME_V assembly_tag Finished 11585796 11585799 . - . Note "Right: H12C20" CHROMOSOME_V assembly_tag Finished 11601209 11601212 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11601209 11601212 . + . Note "left end: F35B12" CHROMOSOME_V assembly_tag Clone 11601209 11601212 . + . Note "left end: Left Hand End F35B12" CHROMOSOME_V assembly_tag Finished 11601309 11601313 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11625002 11625005 . + . Note "right end: F43A11" CHROMOSOME_V assembly_tag Clone 11635683 11635686 . + . Note "left end: Left Hand End T27F2" CHROMOSOME_V assembly_tag Clone 11635683 11635686 . + . Note "left end: T27F2" CHROMOSOME_V assembly_tag Finished 11635683 11635686 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11635790 11635793 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11643722 11643725 . + . Note "right end: Right Hand End F35B12" CHROMOSOME_V assembly_tag Clone 11657042 11657045 . + . Note "left end: Left Hand End F46F3" CHROMOSOME_V assembly_tag Finished 11657042 11657045 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11657042 11657045 . + . Note "left end: F46F3" CHROMOSOME_V assembly_tag Finished 11657146 11657149 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11677615 11677618 . - . Note "right end: T27F2" CHROMOSOME_V assembly_tag annotation 11688233 11688234 . + . Note "Ambiguous calling of data could be\nGG or a combination of AG." CHROMOSOME_V assembly_tag Finished 11688241 11688244 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11688241 11688246 . + . Note "left end: W05E10" CHROMOSOME_V assembly_tag Finished 11688343 11688347 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 11689940 11689940 . + . Note "W05E10 reads call C\nF46F3 reads call T" CHROMOSOME_V assembly_tag annotation 11689940 11689940 . + . Note "W05E10 reads calls C\nF46F3 reads call T" CHROMOSOME_V assembly_tag Clone 11719408 11719411 . + . Note "left end: B0240" CHROMOSOME_V assembly_tag Finished 11719408 11719411 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11719408 11719411 . + . Note "left end: B0240" CHROMOSOME_V assembly_tag Finished 11719508 11719513 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11721233 11721236 . + . Note "right end: W05E10" CHROMOSOME_V assembly_tag Clone 11751643 11751646 . + . Note "left end: T04F3" CHROMOSOME_V assembly_tag Clone 11751643 11751646 . + . Note "left end: T04F3" CHROMOSOME_V assembly_tag Finished 11751643 11751646 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11751749 11751753 . + . Note "Right: " CHROMOSOME_V assembly_tag comment 11752999 11753001 . + . Note "?" CHROMOSOME_V assembly_tag Clone 11763086 11763089 . + . Note "right end: B0240" CHROMOSOME_V assembly_tag comment 11766023 11766031 . + . Note "T04F3 diverges here." CHROMOSOME_V assembly_tag Finished 11766023 11766031 . + . Note "Left: " CHROMOSOME_V assembly_tag repeat 11766023 11766166 . + . Note "?" CHROMOSOME_V assembly_tag comment 11766052 11766060 . + . Note "this is the first read of F55A11" CHROMOSOME_V assembly_tag Finished 11766159 11766166 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11787445 11787448 . + . Note "right end: T04F3" CHROMOSOME_V assembly_tag Finished 11793565 11793568 . + . Note "Left: D2023" CHROMOSOME_V assembly_tag Clone 11793565 11793568 . + . Note "left end: D2023" CHROMOSOME_V assembly_tag Clone 11793565 11793568 . + . Note "left end: D2023" CHROMOSOME_V assembly_tag Finished 11793615 11793620 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11799889 11799892 . - . Note "right end: F55A11" CHROMOSOME_V assembly_tag annotation 11818158 11818158 . + . Note "uncertain base" CHROMOSOME_V assembly_tag annotation 11818164 11818164 . + . Note "could be G" CHROMOSOME_V assembly_tag annotation 11818192 11818192 . + . Note "could be T" CHROMOSOME_V assembly_tag annotation 11818235 11818235 . + . Note "this base may be a C" CHROMOSOME_V assembly_tag annotation 11818935 11818956 . + . Note "probably 22 Cs but could be less." CHROMOSOME_V assembly_tag Clone 11833804 11833809 . + . Note "left end: R13H4" CHROMOSOME_V assembly_tag Finished 11833804 11833809 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11833804 11833809 . - . Note "left end: R13H4" CHROMOSOME_V assembly_tag Finished 11833903 11833908 . - . Note "Right: D2023" CHROMOSOME_V assembly_tag Clone 11834960 11834963 . - . Note "right end: D2023" CHROMOSOME_V assembly_tag Clone 11872199 11872202 . + . Note "left end: K12G11" CHROMOSOME_V assembly_tag Clone 11872199 11872202 . + . Note "left end: K12G11" CHROMOSOME_V assembly_tag Finished 11872199 11872202 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11872300 11872307 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11877107 11877112 . - . Note "right end: R13H4" CHROMOSOME_V assembly_tag Clone 11909526 11909531 . + . Note "left end: R31" CHROMOSOME_V assembly_tag Finished 11909526 11909531 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11909526 11909531 . + . Note "left end: R31" CHROMOSOME_V assembly_tag Finished 11909626 11909635 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11929696 11929699 . + . Note "left end: Left Hand End F58H1" CHROMOSOME_V assembly_tag Finished 11929696 11929699 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11929696 11929699 . + . Note "left end: F58H1" CHROMOSOME_V assembly_tag Finished 11929801 11929804 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11949705 11949710 . + . Note "right end: Right Hand End R31" CHROMOSOME_V assembly_tag Clone 11966594 11966597 . + . Note "left end: Left Hand End C52E4" CHROMOSOME_V assembly_tag Clone 11966594 11966597 . + . Note "left end: C52E4" CHROMOSOME_V assembly_tag Finished 11966594 11966597 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11966705 11966708 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11968800 11968803 . - . Note "right end: F58H1" CHROMOSOME_V assembly_tag annotation 11988831 11988831 . + . Note "one clone calls a G but edited to the majority\nwhich is A." CHROMOSOME_V assembly_tag Finished 11999572 11999575 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11999572 11999575 . + . Note "left end: F57F5" CHROMOSOME_V assembly_tag Clone 11999572 11999575 . + . Note "left end: F57F5" CHROMOSOME_V assembly_tag Finished 11999679 11999682 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 12010312 12010315 . + . Note "right end: C52E4" CHROMOSOME_V assembly_tag Clone 12025310 12025313 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 12025310 12025313 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12025310 12025313 . + . Note "left end: F10C2" CHROMOSOME_V assembly_tag Finished 12025408 12025413 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12037815 12037818 . - . Note "right end: RHE F57F5" CHROMOSOME_V assembly_tag Finished 12061002 12061007 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12061002 12061007 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 12061002 12061007 . + . Note "left end: R07B7" CHROMOSOME_V assembly_tag Finished 12061110 12061113 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 12062273 12062276 . + . Note "right end: F10C2" CHROMOSOME_V assembly_tag Finished 12104365 12104370 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12104465 12104470 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 12104465 12104470 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12104465 12104470 . - . Note "right end: R07B7" CHROMOSOME_V assembly_tag Finished 12129257 12129260 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12129257 12129260 . + . Note "left end: C27A7" CHROMOSOME_V assembly_tag Clone 12129257 12129260 . + . Note "left end: C27A7" CHROMOSOME_V assembly_tag Finished 12129357 12129366 . - . Note "Right: " CHROMOSOME_V assembly_tag Finished 12167668 12167671 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12167767 12167770 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12167767 12167770 . + . Note "right end: C27A7" CHROMOSOME_V assembly_tag Clone 12167767 12167770 . - . Note "right end: C27A7 RHE" CHROMOSOME_V assembly_tag Finished 12169524 12169527 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12169524 12169527 . + . Note "left end: ZK863" CHROMOSOME_V assembly_tag Clone 12169524 12169527 . + . Note "left end: ZK863 LHE" CHROMOSOME_V assembly_tag Finished 12169628 12169631 . - . Note "Right: " CHROMOSOME_V assembly_tag Finished 12169629 12169631 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 12170041 12170041 . + . Note "1 clone reads CCGGCT here" CHROMOSOME_V assembly_tag Clone 12197154 12197157 . + . Note "left end: ZK836" CHROMOSOME_V assembly_tag Finished 12197154 12197157 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12197154 12197157 . + . Note "left end: ZK836" CHROMOSOME_V assembly_tag Finished 12197260 12197269 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12206968 12206971 . - . Note "right end: ZK863" CHROMOSOME_V assembly_tag Clone 12224009 12224012 . + . Note "left end: K12F2" CHROMOSOME_V assembly_tag Clone 12224009 12224012 . + . Note "left end: K12F2" CHROMOSOME_V assembly_tag Finished 12224009 12224012 . + . Note "Left: K12F2" CHROMOSOME_V assembly_tag Finished 12224109 12224115 . - . Note "Right: ZK836" CHROMOSOME_V assembly_tag Clone 12233222 12233225 . - . Note "right end: ZK836" CHROMOSOME_V assembly_tag Finished 12236906 12236909 . + . Note "Left: T04H1" CHROMOSOME_V assembly_tag Clone 12236906 12236909 . + . Note "left end: T04H1" CHROMOSOME_V assembly_tag Clone 12236906 12236909 . + . Note "left end: T04H1" CHROMOSOME_V assembly_tag Finished 12237004 12237007 . - . Note "Right: K12F2" CHROMOSOME_V assembly_tag Clone 12263437 12263440 . - . Note "right end: K12F2" CHROMOSOME_V assembly_tag Clone 12264711 12264714 . + . Note "left end: F55C5" CHROMOSOME_V assembly_tag Finished 12264711 12264714 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12264711 12264714 . + . Note "left end: F55C5" CHROMOSOME_V assembly_tag Finished 12264810 12264813 . - . Note "Right: T04H1" CHROMOSOME_V assembly_tag Clone 12275628 12275631 . - . Note "right end: T04H1" CHROMOSOME_V assembly_tag Finished 12305160 12305163 . + . Note "Left: C51F7" CHROMOSOME_V assembly_tag Finished 12305260 12305263 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 12305260 12305263 . - . Note "right end: F55C5" CHROMOSOME_V assembly_tag Clone 12305260 12305263 . - . Note "right end: F55C5" CHROMOSOME_V assembly_tag Clone 12310582 12310587 . + . Note "left end: R04F11" CHROMOSOME_V assembly_tag Clone 12310582 12310587 . + . Note "left end: R04F11" CHROMOSOME_V assembly_tag Finished 12310582 12310587 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12310680 12310683 . - . Note "Right: C51F7" CHROMOSOME_V assembly_tag Clone 12343442 12343445 . + . Note "left end: F23H12" CHROMOSOME_V assembly_tag Clone 12343442 12343445 . + . Note "left end: F23H12" CHROMOSOME_V assembly_tag Finished 12343442 12343445 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12343542 12343556 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12351810 12351815 . + . Note "right end: R04F11" CHROMOSOME_V assembly_tag Clone 12378904 12378907 . + . Note "left end: K01D12" CHROMOSOME_V assembly_tag Clone 12378904 12378907 . + . Note "left end: K01D12" CHROMOSOME_V assembly_tag Finished 12378904 12378907 . + . Note "Left: K01D12" CHROMOSOME_V assembly_tag Finished 12378999 12379005 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12383808 12383811 . + . Note "right end: F23H12" CHROMOSOME_V assembly_tag Finished 12411664 12411667 . + . Note "Left: C54D10" CHROMOSOME_V assembly_tag Clone 12411664 12411667 . + . Note "left end: C54D10" CHROMOSOME_V assembly_tag Clone 12415874 12415877 . + . Note "right end: K01D12" CHROMOSOME_V assembly_tag Clone 12415874 12415877 . + . Note "right end: K01D12" CHROMOSOME_V assembly_tag Finished 12415874 12415877 . + . Note "Right: K01D12" CHROMOSOME_V assembly_tag Finished 12452016 12452019 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12452016 12452019 . + . Note "left end: F28C1" CHROMOSOME_V assembly_tag Clone 12452016 12452019 . + . Note "left end: F28C1" CHROMOSOME_V assembly_tag Finished 12452110 12452113 . + . Note "Right: C54D10" CHROMOSOME_V assembly_tag Clone 12453032 12453035 . + . Note "right end: C54D10" CHROMOSOME_V assembly_tag annotation 12465827 12466019 . + . Note "multiple copies of the GA doublet. because of the repetative nature of the sequence the number of copies cannot be guarenteed. Ava1 restriction fragment size from cosmid DNA corresponding to this region is approx 4411." CHROMOSOME_V assembly_tag Finished 12474359 12474366 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12474359 12474366 . + . Note "left end: W04D2" CHROMOSOME_V assembly_tag Clone 12474359 12474366 . + . Note "left end: W04D2" CHROMOSOME_V assembly_tag Finished 12474461 12474467 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12484178 12484181 . + . Note "right end: F28C1" CHROMOSOME_V assembly_tag Finished 12501342 12501345 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12501342 12501345 . + . Note "left end: T28H10" CHROMOSOME_V assembly_tag Clone 12501342 12501345 . + . Note "left end: T28H10" CHROMOSOME_V assembly_tag Finished 12501453 12501456 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12509657 12509660 . + . Note "right end: W04D2" CHROMOSOME_V assembly_tag annotation 12512582 12513024 . + . Note "this region: tandem reapeat of 9 bases TAGGTAGTC. digest shows there is 7-9kb missing from this region. there is evidence of cosmid deletion. digest shows insert of about 26kb." CHROMOSOME_V assembly_tag Clone 12516253 12516256 . + . Note "right end: T28H10" CHROMOSOME_V assembly_tag Finished 12516253 12516256 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 12516253 12516256 . + . Note "Left: C13C12" CHROMOSOME_V assembly_tag Clone 12516253 12516256 . - . Note "right end: T28H10" CHROMOSOME_V assembly_tag Finished 12529572 12529575 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12529572 12529575 . + . Note "left end: F45D3" CHROMOSOME_V assembly_tag Clone 12529572 12529575 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 12529572 12529575 . + . Note "left end: F45D3" CHROMOSOME_V assembly_tag Finished 12529673 12529676 . - . Note "Right: C13C12" CHROMOSOME_V assembly_tag comment 12542308 12542319 . + . Note "?diverges" CHROMOSOME_V assembly_tag Finished 12566898 12566898 . + . Note "Left: E02A10" CHROMOSOME_V assembly_tag Clone 12567002 12567004 . + . Note "right end: F45D3" CHROMOSOME_V assembly_tag Clone 12567002 12567005 . - . Note "right end: F45D3" CHROMOSOME_V assembly_tag Finished 12567002 12567005 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 12577303 12577321 . - . Note "variable number (17-18) of Ts\nacross this region" CHROMOSOME_V assembly_tag annotation 12577781 12577785 . - . Note "single read has run of 6 As" CHROMOSOME_V assembly_tag Finished 12590690 12590690 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12590690 12590693 . + . Note "left end: C14C10" CHROMOSOME_V assembly_tag Clone 12590690 12590693 . - . Note "left end: C14C10" CHROMOSOME_V assembly_tag Finished 12590786 12590786 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 12610092 12610092 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12610092 12610097 . + . Note "left end: ZC116" CHROMOSOME_V assembly_tag Clone 12610092 12610097 . + . Note "left end: ZC116" CHROMOSOME_V assembly_tag Finished 12610197 12610197 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12626654 12626657 . + . Note "right end: C14C10" CHROMOSOME_V assembly_tag Finished 12626864 12626864 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12626864 12626867 . + . Note "left end: F56H9" CHROMOSOME_V assembly_tag Clone 12626864 12626867 . + . Note "left end: F56H9" CHROMOSOME_V assembly_tag Finished 12626964 12626964 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 12635655 12635655 . + . Note "base has primer and terminator (walks and universal primer) reads. The term spacing suggests a base here, and primer sequencing suggests a G. However none of the terms show a clear base, so there is an element of doubt about the identity of this base" CHROMOSOME_V assembly_tag Clone 12644972 12644977 . + . Note "right end: ZC116" CHROMOSOME_V assembly_tag annotation 12651256 12651262 . + . Note "single template over these 7 bases" CHROMOSOME_V assembly_tag Clone 12655056 12655063 . + . Note "left end: W05B10 Not I site" CHROMOSOME_V assembly_tag Finished 12655058 12655058 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12655058 12655063 . + . Note "left end: W05B10" CHROMOSOME_V assembly_tag Finished 12655154 12655154 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12667195 12667198 . + . Note "right end: F56H9" CHROMOSOME_V assembly_tag Finished 12683985 12683985 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12683985 12683988 . + . Note "left end: Left hand end of K10C8." CHROMOSOME_V assembly_tag Clone 12683985 12683988 . + . Note "left end: K01C8" CHROMOSOME_V assembly_tag Finished 12684088 12684088 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12689177 12689180 . + . Note "right end: Right hand end of W05B10." CHROMOSOME_V assembly_tag Finished 12704961 12704961 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12704961 12704966 . + . Note "left end: Left hand end of R11D1." CHROMOSOME_V assembly_tag Clone 12704961 12704966 . + . Note "left end: Left hand end of R11D1." CHROMOSOME_V assembly_tag Finished 12705061 12705061 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12717911 12717914 . + . Note "right end: K10C8" CHROMOSOME_V assembly_tag Finished 12735554 12735554 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12735554 12735557 . + . Note "left end: Left hand end of C15C8." CHROMOSOME_V assembly_tag Clone 12735554 12735557 . + . Note "left end: C15C8" CHROMOSOME_V assembly_tag Finished 12735658 12735658 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12739884 12739889 . + . Note "right end: Right hand end of R11D1." CHROMOSOME_V assembly_tag Finished 12756230 12756230 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12756230 12756233 . + . Note "left end: F18E2" CHROMOSOME_V assembly_tag Clone 12756230 12756233 . + . Note "left end: Left hand end of F18E2" CHROMOSOME_V assembly_tag Finished 12756333 12756333 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 12767225 12767230 . + . Note "Single read shows 7 A's instead of 6." CHROMOSOME_V assembly_tag annotation 12770546 12770546 . + . Note "Single read has this A deleted to give GAGG instead of GAGAG " CHROMOSOME_V assembly_tag Clone 12780606 12780609 . + . Note "right end: C15C8" CHROMOSOME_V assembly_tag Finished 12781450 12781450 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12781450 12781455 . + . Note "left end: ZC455" CHROMOSOME_V assembly_tag Clone 12781450 12781455 . + . Note "left end: ZC455" CHROMOSOME_V assembly_tag Finished 12781550 12781550 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12796332 12796335 . + . Note "right end: F18E2" CHROMOSOME_V assembly_tag annotation 12809447 12809451 . + . Note "point mutation/ deleted A on single read" CHROMOSOME_V assembly_tag Finished 12809577 12809577 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12809577 12809582 . + . Note "left end: ZC443" CHROMOSOME_V assembly_tag Clone 12809577 12809582 . + . Note "left end: ZC443" CHROMOSOME_V assembly_tag Finished 12809677 12809677 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12818920 12818923 . + . Note "left end: left end of C44H9" CHROMOSOME_V assembly_tag annotation 12819915 12819917 . + . Note "single read shows A, but thought to be gel artifact" CHROMOSOME_V assembly_tag annotation 12829573 12829580 . + . Note "?end of zc443 finishing. Large overlap with C44H9 split halfway for finishing purposes." CHROMOSOME_V assembly_tag Finished 12829587 12829587 . + . Note "Left: " CHROMOSOME_V assembly_tag comment 12829684 12829684 . + . CHROMOSOME_V assembly_tag Finished 12829684 12829684 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12839547 12839552 . + . Note "right end: ZC443" CHROMOSOME_V assembly_tag Finished 12858162 12858162 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12858162 12858165 . + . Note "left end: T07F10" CHROMOSOME_V assembly_tag Clone 12858162 12858165 . + . Note "left end: T07F10" CHROMOSOME_V assembly_tag Finished 12858270 12858270 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12860858 12860861 . + . Note "right end: C44H9" CHROMOSOME_V assembly_tag Clone 12875948 12875953 . + . Note "left end: R90" CHROMOSOME_V assembly_tag Finished 12885006 12885006 . + . Note "Left: R90 finished left" CHROMOSOME_V assembly_tag Finished 12885130 12885130 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12895936 12895939 . + . Note "right end: T07F10 clone left" CHROMOSOME_V assembly_tag annotation 12899564 12899574 . + . Note "there seems to be a variable number of Cs here. Maximum number of 10 minimum of 8." CHROMOSOME_V assembly_tag Finished 12910266 12910269 . + . Note "Left: F54F3" CHROMOSOME_V assembly_tag Clone 12910360 12910365 . + . Note "right end: R90 clone right" CHROMOSOME_V assembly_tag Clone 12910360 12910365 . - . Note "right end: R90 clone right" CHROMOSOME_V assembly_tag Finished 12910365 12910365 . + . Note "Right: R90 finished right" CHROMOSOME_V assembly_tag annotation 12922095 12922095 . + . CHROMOSOME_V assembly_tag Finished 12926339 12926342 . + . Note "Left: T16G1" CHROMOSOME_V assembly_tag Clone 12926339 12926342 . + . Note "left end: T16G1" CHROMOSOME_V assembly_tag Clone 12926339 12926342 . + . Note "left end: T16G1" CHROMOSOME_V assembly_tag Finished 12926435 12926438 . + . Note "Right: F54F3" CHROMOSOME_V assembly_tag Clone 12940712 12940715 . + . Note "right end: F54F3" CHROMOSOME_V assembly_tag Finished 12961448 12961448 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12961448 12961453 . + . Note "left end: R186" CHROMOSOME_V assembly_tag Clone 12961448 12961453 . + . Note "left end: R186 clone left end" CHROMOSOME_V assembly_tag Finished 12961544 12961547 . + . Note "Right: T16G1" CHROMOSOME_V assembly_tag Finished 12990479 12990479 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12990479 12990482 . + . Note "left end: F15B9 clone left end" CHROMOSOME_V assembly_tag Clone 12990479 12990482 . - . Note "left end: F15B9" CHROMOSOME_V assembly_tag Finished 12990581 12990581 . + . Note "Right: R186 finished right" CHROMOSOME_V assembly_tag comment 13007420 13007420 . + . Note "removed C jes 31-12-01" CHROMOSOME_V assembly_tag Finished 13022623 13022623 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13022623 13022626 . + . Note "left end: left end of W07G4" CHROMOSOME_V assembly_tag Clone 13022623 13022626 . - . Note "left end: W07G4" CHROMOSOME_V assembly_tag Finished 13022726 13022726 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13031808 13031809 . + . Note "This read shows single base difference of an extra t" CHROMOSOME_V assembly_tag Finished 13053523 13053523 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13053523 13053526 . + . Note "left end: Left hand end of F42E8." CHROMOSOME_V assembly_tag Clone 13053523 13053526 . + . Note "left end: Left hand end of F42E8." CHROMOSOME_V assembly_tag Finished 13053623 13053623 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13059661 13059664 . + . Note "right end: Right hand end of W07G4. W07G4 has a GATC site, this is not present in F42E8. F42E8 reads GGTT." CHROMOSOME_V assembly_tag annotation 13067361 13067361 . + . Note "This point only has a PCR product from cosmid DNA covering it. I have called it a T but it does have high A background. I have been unable to resolve it." CHROMOSOME_V assembly_tag Finished 13071749 13071749 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13071749 13071752 . + . Note "left end: Left hand end of C34B4." CHROMOSOME_V assembly_tag Clone 13071749 13071752 . + . Note "left end: C34B4" CHROMOSOME_V assembly_tag Finished 13071849 13071849 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13089868 13089871 . + . Note "right end: F42E8" CHROMOSOME_V assembly_tag Finished 13113690 13113690 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13113690 13113693 . + . Note "left end: Left hand end of VB0365." CHROMOSOME_V assembly_tag Clone 13113787 13113790 . + . Note "right end: C34B4" CHROMOSOME_V assembly_tag Clone 13113787 13113790 . + . Note "right end: Right hand end of C34B4." CHROMOSOME_V assembly_tag Finished 13113790 13113790 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13116587 13116587 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13116587 13116590 . + . Note "left end: Left hand end of B0365." CHROMOSOME_V assembly_tag Clone 13116587 13116590 . + . Note "left end: Left hand end of B0365.\n" CHROMOSOME_V assembly_tag Clone 13116684 13116687 . + . Note "right end: Right hand end of VB0365." CHROMOSOME_V assembly_tag Finished 13116687 13116687 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13152450 13152450 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13152450 13152453 . + . Note "left end: K03H4" CHROMOSOME_V assembly_tag Clone 13152450 13152453 . + . Note "left end: Left hand end of K03H4." CHROMOSOME_V assembly_tag Finished 13152550 13152550 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13152672 13152672 . + . Note "only this clone calls g edited to consensus" CHROMOSOME_V assembly_tag Clone 13166964 13166967 . + . Note "left end: T09E8" CHROMOSOME_V assembly_tag Finished 13172428 13172428 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 13172639 13172639 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13190675 13190675 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13190675 13190678 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 13190675 13190678 . + . Note "left end: Left hand end of F57B1." CHROMOSOME_V assembly_tag Finished 13190778 13190778 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13226463 13226463 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13226463 13226465 . + . Note "left end: C34D1" CHROMOSOME_V assembly_tag Clone 13226463 13226466 . + . Note "left end: C34D1" CHROMOSOME_V assembly_tag Finished 13227206 13227206 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13231732 13231735 . + . Note "right end: Right hand end of F57B1." CHROMOSOME_V assembly_tag annotation 13233510 13233510 . + . Note "single G on both reads one of which is a term. However, the terminator read has a very wide peak. We do not think this suggests 2 real Gs as all the G peaks for this read are wide, so this suggests it is a gel artifact" CHROMOSOME_V assembly_tag Finished 13271385 13271388 . + . Note "Left: F32F2" CHROMOSOME_V assembly_tag Clone 13271481 13271484 . + . Note "right end: right end of C34D1" CHROMOSOME_V assembly_tag Clone 13271481 13271484 . + . Note "right end: C34D1" CHROMOSOME_V assembly_tag Finished 13271484 13271484 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13288727 13288727 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13288727 13288730 . + . Note "left end: C26E1" CHROMOSOME_V assembly_tag Clone 13288727 13288730 . + . Note "left end: Left hand end of C26E1." CHROMOSOME_V assembly_tag Finished 13288823 13288826 . + . Note "Right: F32F2" CHROMOSOME_V assembly_tag annotation 13302709 13302709 . + . Note "There is point mutation on a single clone which has changed from an A to a T." CHROMOSOME_V assembly_tag Finished 13310004 13310004 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13310004 13310007 . + . Note "left end: Left hand end of C50B6." CHROMOSOME_V assembly_tag Clone 13310004 13310007 . + . Note "left end: C50B6" CHROMOSOME_V assembly_tag annotation 13310004 13310007 . + . Note "C50B6\nPossible polymorphism here. C26E1 \nshows GAGA while C50B6 has GATC.\n\nAlternatively the GATC in C50B6 could\nbe a cloning artifact" CHROMOSOME_V assembly_tag Polymorphism 13310006 13310007 . + . Note "Possible polymorphism here. C26E1 shows GAGA the ovelaping cosmid C50B6 has GATC. Alternatively the GATC in C50B6 could be a cloning artifact. " CHROMOSOME_V assembly_tag Finished 13310104 13310104 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13329419 13329427 . + . Note "strange spacing in some reads due to \npotential repeat?" CHROMOSOME_V assembly_tag annotation 13332073 13332074 . + . Note "point mutation of this clone of\nag > gt" CHROMOSOME_V assembly_tag Finished 13351222 13351222 . + . Note "Left: F32H5" CHROMOSOME_V assembly_tag Clone 13351222 13351225 . + . Note "left end: F32H5" CHROMOSOME_V assembly_tag Clone 13351222 13351225 . + . Note "left end: F32H5" CHROMOSOME_V assembly_tag Finished 13351325 13351325 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13353511 13353514 . + . Note "right end: C50B6" CHROMOSOME_V assembly_tag annotation 13368509 13369059 . + . Note "Tandem repeat of 19 bp with consensusTAGATTGTTACACGAAAAARestriction digest data suggests thatthere are approximately 50 copies ofthis tandem repeat. All clones across this region have deleted out a variablenumber of copies of the repeat, so it is not possible to put together an exact consensus for this region. There are no "full length" clonesacross the repeat.Restriction Digest suggests that the assembly is approximately correct " CHROMOSOME_V assembly_tag annotation 13368737 13368741 . + . Note "tandem repeat of 19 bp with consensusTAGATTGTTACACGAAAAARestriction digest data suggests thatthere are approximately 50 copies ofthis tandem repeat. All clones across this region have deleted out a variablenumber of copies of the repeat, so it is not possible to put together an exact consensus for this region. There are no "full length" clonesacross the repeat.Approximately 399bp missing" CHROMOSOME_V assembly_tag Finished 13370632 13370632 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13370632 13370635 . + . Note "left end: Left hand end of M04G12." CHROMOSOME_V assembly_tag Clone 13370632 13370635 . + . Note "left end: M04G12" CHROMOSOME_V assembly_tag Finished 13370728 13370731 . + . Note "Right: F32H5" CHROMOSOME_V assembly_tag Clone 13386452 13386455 . + . Note "right end: Right hand end of F32H5." CHROMOSOME_V assembly_tag Finished 13392129 13392129 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13392129 13392132 . + . Note "left end: F53F1" CHROMOSOME_V assembly_tag Clone 13392129 13392132 . + . Note "left end: F53F1" CHROMOSOME_V assembly_tag Finished 13392229 13392229 . + . Note "Right: M04G12" CHROMOSOME_V assembly_tag Clone 13413884 13413887 . - . Note "right end: Right hand end of M04G12." CHROMOSOME_V assembly_tag Finished 13431507 13431510 . + . Note "Left: Y2H9A" CHROMOSOME_V assembly_tag Clone 13431603 13431606 . + . Note "right end: F53F1" CHROMOSOME_V assembly_tag Clone 13431603 13431606 . + . Note "right end: F53F1" CHROMOSOME_V assembly_tag Finished 13431606 13431606 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13436670 13436719 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSequence from terminator and primer \nreads from a single pUC clone." CHROMOSOME_V assembly_tag annotation 13440964 13440975 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region consisting only of reads from a short insert library derived from a single pUC clone. This sequence formspart of one arm of an inverted repeat." CHROMOSOME_V assembly_tag Finished 13449709 13449709 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13449709 13449712 . + . Note "left end: F25H9" CHROMOSOME_V assembly_tag Clone 13449709 13449712 . + . Note "left end: F25H9" CHROMOSOME_V assembly_tag Finished 13449805 13449808 . + . Note "Right: Y2H9A" CHROMOSOME_V assembly_tag Finished 13471847 13471847 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13471847 13471850 . + . Note "left end: T10G3" CHROMOSOME_V assembly_tag Clone 13471847 13471850 . + . Note "left end: T10G3" CHROMOSOME_V assembly_tag Finished 13471947 13471947 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13490120 13490123 . + . Note "right end: F25H9\n" CHROMOSOME_V assembly_tag Finished 13505928 13505928 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13505928 13505933 . + . Note "left end: pjb8" CHROMOSOME_V assembly_tag Clone 13505928 13505933 . + . Note "left end: R11G10" CHROMOSOME_V assembly_tag Finished 13506028 13506028 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13508136 13508136 . + . Note "right end: rh end of T10G3" CHROMOSOME_V assembly_tag annotation 13518361 13518361 . + . Note "single read has missing G" CHROMOSOME_V assembly_tag Finished 13528934 13528934 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13528934 13528937 . + . Note "left end: Left hand end of C56A3." CHROMOSOME_V assembly_tag Clone 13528934 13528937 . + . Note "left end: C56A3" CHROMOSOME_V assembly_tag Finished 13529036 13529036 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13541869 13541874 . + . Note "right end: Right hand end of R11G10." CHROMOSOME_V assembly_tag Finished 13567577 13567577 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13567577 13567580 . + . Note "left end: Left hand end of C50B8." CHROMOSOME_V assembly_tag Clone 13567577 13567580 . + . Note "left end: C50B8" CHROMOSOME_V assembly_tag Finished 13567677 13567677 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13569254 13569257 . + . Note "right end: possible end of C56A3" CHROMOSOME_V assembly_tag Finished 13586991 13586991 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13586991 13586994 . + . Note "left end: possible left end of F53F4" CHROMOSOME_V assembly_tag Clone 13586991 13586994 . + . Note "left end: F53F4 clone left" CHROMOSOME_V assembly_tag Finished 13587094 13587094 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13608227 13608230 . + . Note "right end: C50B8 right hand clone" CHROMOSOME_V assembly_tag Finished 13631317 13631320 . + . Note "Left: H37A05" CHROMOSOME_V assembly_tag Clone 13631413 13631416 . + . Note "right end: F53F4" CHROMOSOME_V assembly_tag Clone 13631413 13631416 . + . Note "right end: F53F4 clone right" CHROMOSOME_V assembly_tag Finished 13631416 13631416 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13645255 13645375 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13645399 13645461 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13645450 13645481 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Forced join in tandem repeat region.Each repeat element is 16 bp long, with typical sequence:GAAAAATTTCGTGGCGRestriction digest data (ECORI, HINDIII)indicate around 16 copies of the repeatare missing from this assembly." CHROMOSOME_V assembly_tag annotation 13646965 13647153 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13647266 13647587 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13648536 13648547 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here - Another version offosmid was found; two clones had these 12 bp missing from the sequence, while 5 clones had these 12 bp present." CHROMOSOME_V assembly_tag annotation 13648617 13648746 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region consisting only of short insert reads derived from a single pUC clone." CHROMOSOME_V assembly_tag annotation 13650496 13650509 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region consisting only of short insertreads derived from a single pUC clone." CHROMOSOME_V assembly_tag annotation 13654489 13654613 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -Single-stranded region, part of small hairpin. Attempts to sequence with terminator chemistry failed. There are two reads across this region, one ET primer and one Big Dye primer. The sequence has been carefully checked andno evidence of any compressions has been found. " CHROMOSOME_V assembly_tag Finished 13662443 13662443 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13662443 13662446 . + . Note "left end: F58G11" CHROMOSOME_V assembly_tag Clone 13662443 13662446 . + . Note "left end: F58G11" CHROMOSOME_V assembly_tag Finished 13662539 13662542 . + . Note "Right: H37A05" CHROMOSOME_V assembly_tag annotation 13666821 13666821 . + . Note "this clone only calls an extra g\nbetween the 2 a's" CHROMOSOME_V assembly_tag annotation 13674846 13674846 . + . Note "one clone calls a g instead of an a" CHROMOSOME_V assembly_tag annotation 13674897 13674897 . + . Note "point mutation of A to a T in this\nclone" CHROMOSOME_V assembly_tag Finished 13694160 13694160 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13694160 13694163 . + . Note "left end: T01D3" CHROMOSOME_V assembly_tag Clone 13694160 13694163 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 13694263 13694263 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13718469 13718479 . + . Note "single read only in loop of inverted repeat" CHROMOSOME_V assembly_tag annotation 13718480 13718493 . + . Note "region within loop of inverted repeat. Covered by 2 reads, but data is not 100 %, although we feel that this sequence is correct." CHROMOSOME_V assembly_tag Clone 13722474 13722477 . + . Note "left end: F35E12" CHROMOSOME_V assembly_tag Finished 13722474 13722477 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13722474 13722477 . + . Note "left end: F35E12" CHROMOSOME_V assembly_tag Finished 13722574 13722574 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13730214 13730224 . + . CHROMOSOME_V assembly_tag Clone 13731386 13731389 . + . Note "right end: T01D3" CHROMOSOME_V assembly_tag Finished 13753545 13753545 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13753545 13753548 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 13753545 13753548 . + . Note "left end: F20G2" CHROMOSOME_V assembly_tag Clone 13753545 13753548 . + . Note "left end: F20G2" CHROMOSOME_V assembly_tag Finished 13753643 13753643 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13757288 13757288 . + . Note "missing base" CHROMOSOME_V assembly_tag Finished 13777605 13777605 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13777605 13777608 . + . Note "left end: F53C11" CHROMOSOME_V assembly_tag Clone 13777605 13777608 . + . Note "left end: F53C11 left end" CHROMOSOME_V assembly_tag Finished 13777704 13777704 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13812299 13812299 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13812299 13812302 . + . Note "left end: left end of F55B12" CHROMOSOME_V assembly_tag Clone 13812299 13812302 . + . Note "left end: Left hand end of F55B12." CHROMOSOME_V assembly_tag Finished 13812400 13812400 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13822558 13822561 . + . Note "right end: Right hand end of F53C11." CHROMOSOME_V assembly_tag Finished 13844449 13844449 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13844449 13844452 . + . Note "left end: Left hand end of F09F3." CHROMOSOME_V assembly_tag Clone 13844449 13844452 . + . Note "left end: F09F3" CHROMOSOME_V assembly_tag Finished 13844549 13844549 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13851140 13851143 . + . Note "right end: F55B12" CHROMOSOME_V assembly_tag annotation 13868923 13868932 . + . Note "single read has 11 Ts " CHROMOSOME_V assembly_tag annotation 13869124 13869124 . + . Note "single read has A deleted at this position. Terms demonstrate this id a deletion not a compression" CHROMOSOME_V assembly_tag annotation 13873707 13873715 . + . Note "single read has 9bp deletion" CHROMOSOME_V assembly_tag Finished 13877774 13877774 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13877774 13877777 . + . Note "left end: T22G5" CHROMOSOME_V assembly_tag Clone 13877774 13877777 . + . Note "left end: T22G5" CHROMOSOME_V assembly_tag Finished 13877877 13877877 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13880154 13880157 . + . Note "right end: " CHROMOSOME_V assembly_tag annotation 13885229 13885668 . + . Note "restriction digest data suggests thatthere is a further 1kb of data missing from between these points.This region incorporates 2 tandem repeats one of 35bp (for which thisassembly has 9 copies) and one of 40bp(for which this assembly has 11 copies).There are numerous floating reads thatdo not completely match, so we are assuming that the repeat itself isunstable, and as such this is the most complete assembly we are ableto produce" CHROMOSOME_V assembly_tag Finished 13899926 13899926 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13899926 13899929 . + . Note "left end: C06B3" CHROMOSOME_V assembly_tag Clone 13899926 13899929 . + . Note "left end: C06B3" CHROMOSOME_V assembly_tag annotation 13899926 13899929 . + . Note "True clone left of C06B3 other C06B3 traces to the right are probbly true T22G5 clones." CHROMOSOME_V assembly_tag Finished 13900027 13900027 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13910143 13910146 . + . Note "right end: T22G5" CHROMOSOME_V assembly_tag Finished 13935217 13935217 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13935217 13935222 . + . Note "left end: R10D12" CHROMOSOME_V assembly_tag Clone 13935217 13935222 . + . Note "left end: R10D12" CHROMOSOME_V assembly_tag Finished 13935322 13935322 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13944668 13944671 . + . Note "right end: C06B3" CHROMOSOME_V assembly_tag Clone 13971194 13971197 . + . Note "left end: T26F2" CHROMOSOME_V assembly_tag Clone 13971194 13971197 . + . Note "left end: T26F2" CHROMOSOME_V assembly_tag Finished 13971194 13971197 . + . Note "Left: T26F2" CHROMOSOME_V assembly_tag Finished 13971296 13971296 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13974635 13974973 . + . Note "Loop of large inverted repeat \norientation of loop is unknown " CHROMOSOME_V assembly_tag Clone 13978301 13978306 . + . Note "right end: R10D12" CHROMOSOME_V assembly_tag Clone 13978301 13978306 . - . Note "right end: " CHROMOSOME_V assembly_tag annotation 13979421 13979480 . - . Note "Single clone across repetitive region edited according to repeat.Seemsto be no base pair difference in this\nregion between the 2 arms of this \ninverted repeat.\nRestriction digest agrees with data" CHROMOSOME_V assembly_tag annotation 13985892 13985998 . + . Note "Region covered by single clonewith 2 different chemistriesThis region is immediately to the leftof a small inverted repeat making confirmation of this sequence difficultRestriction digest of EcoRI gives apredicted band size of 5015 vs 4987from data." CHROMOSOME_V assembly_tag Clone 13987126 13987129 . + . Note "left end: F58E10" CHROMOSOME_V assembly_tag Clone 13987126 13987129 . + . Note "left end: F58E10" CHROMOSOME_V assembly_tag Finished 13987126 13987129 . + . Note "Left: F58E10" CHROMOSOME_V assembly_tag Clone 13987126 13987229 . - . Note "left end: " CHROMOSOME_V assembly_tag Finished 13987226 13987229 . - . Note "Right: T26F2" CHROMOSOME_V assembly_tag Clone 14019265 14019268 . + . Note "left end: T08G5" CHROMOSOME_V assembly_tag Clone 14019265 14019268 . + . Note "left end: T08G5" CHROMOSOME_V assembly_tag Finished 14019265 14019268 . + . Note "Left: T08G5" CHROMOSOME_V assembly_tag Finished 14019365 14019368 . + . Note "Right: F58E10" CHROMOSOME_V assembly_tag Clone 14027668 14027671 . + . Note "right end: F58E10" CHROMOSOME_V assembly_tag Finished 14051542 14051542 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14051542 14051545 . - . Note "left end: F58D12" CHROMOSOME_V assembly_tag Clone 14051542 14051545 . - . Note "left end: F58D12" CHROMOSOME_V assembly_tag Finished 14051638 14051641 . + . Note "Right: T08G5" CHROMOSOME_V assembly_tag annotation 14055964 14055964 . + . Note "8 clones from T08G5 call Cgg rest\ncall ggg possible repeat in T08G5\nor point mutation." CHROMOSOME_V assembly_tag annotation 14056017 14056018 . - . Note "8 clones form T08G5 call Gg rest of \nclones call ag possible repeat in \nT08G5 or point mutation\n" CHROMOSOME_V assembly_tag Clone 14058570 14058573 . + . Note "right end: T08G5" CHROMOSOME_V assembly_tag Clone 14066057 14066060 . + . Note "left end: D1086" CHROMOSOME_V assembly_tag Finished 14066057 14066060 . + . Note "Left: D1086" CHROMOSOME_V assembly_tag Clone 14066057 14066060 . - . Note "left end: D1086" CHROMOSOME_V assembly_tag Finished 14066160 14066160 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14092540 14092543 . + . Note "right end: F58D12" CHROMOSOME_V assembly_tag Finished 14107223 14107226 . + . Note "Left: H39E23" CHROMOSOME_V assembly_tag Clone 14107323 14107326 . + . Note "right end: D1086" CHROMOSOME_V assembly_tag Finished 14107323 14107326 . + . Note "Right: D1086" CHROMOSOME_V assembly_tag Clone 14107323 14107326 . - . Note "right end: D1086\n" CHROMOSOME_V assembly_tag annotation 14110103 14110107 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nregion confirmed by restriction digest" CHROMOSOME_V assembly_tag Finished 14128933 14128936 . + . Note "Left: AH10" CHROMOSOME_V assembly_tag Clone 14128933 14128936 . + . Note "left end: AH10" CHROMOSOME_V assembly_tag Clone 14128933 14128936 . + . Note "left end: AH10" CHROMOSOME_V assembly_tag Clone 14128933 14128936 . + . Note "left end: Start of AH10" CHROMOSOME_V assembly_tag Finished 14129033 14129036 . + . Note "Right: H39E23" CHROMOSOME_V assembly_tag Clone 14143344 14143347 . + . Note "left end: T02B5" CHROMOSOME_V assembly_tag Clone 14145557 14145560 . + . Note "right end: End of T02B5" CHROMOSOME_V assembly_tag Finished 14159868 14159871 . + . Note "Left: T02B5" CHROMOSOME_V assembly_tag Finished 14159968 14159971 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14159968 14159971 . + . Note "right end: AH10" CHROMOSOME_V assembly_tag Finished 14159968 14159971 . + . Note "Right: AH10" CHROMOSOME_V assembly_tag Clone 14159968 14159971 . + . Note "right end: End of AH10" CHROMOSOME_V assembly_tag Clone 14159968 14159971 . + . Note "right end: AH10" CHROMOSOME_V assembly_tag Clone 14171459 14171464 . + . Note "left end: ZC376" CHROMOSOME_V assembly_tag Clone 14171459 14171464 . + . Note "left end: ZC376" CHROMOSOME_V assembly_tag Finished 14171459 14171464 . + . Note "Left: ZC376" CHROMOSOME_V assembly_tag Finished 14171561 14171564 . + . Note "Right: T02B5" CHROMOSOME_V assembly_tag Finished 14200117 14200120 . + . Note "Left: T16A9" CHROMOSOME_V assembly_tag Clone 14200117 14200120 . + . Note "left end: T16A9" CHROMOSOME_V assembly_tag Clone 14200117 14200120 . + . Note "left end: T16A9" CHROMOSOME_V assembly_tag Finished 14200217 14200220 . + . Note "Right: ZC376" CHROMOSOME_V assembly_tag Inverted 14205439 14205618 . + . Note "Repeat: " CHROMOSOME_V assembly_tag Inverted 14205635 14205821 . + . Note "Repeat: " CHROMOSOME_V assembly_tag annotation 14205677 14205677 . + . Note "One M13 clone had an A in this position All others had a T (5 more clones)" CHROMOSOME_V assembly_tag Clone 14209339 14209344 . + . Note "right end: ZC376" CHROMOSOME_V assembly_tag Clone 14225095 14225098 . + . Note "left end: K02E11" CHROMOSOME_V assembly_tag Clone 14225095 14225098 . + . Note "left end: K02E11" CHROMOSOME_V assembly_tag Finished 14225095 14225098 . + . Note "Left: K02E11" CHROMOSOME_V assembly_tag Finished 14225195 14225198 . + . Note "Right: T16A9" CHROMOSOME_V assembly_tag Clone 14234794 14234797 . + . Note "right end: T16A9" CHROMOSOME_V assembly_tag annotation 14252870 14252881 . + . Note "A single M13 clone had 13 Ts in this position rather than 12 (in 7 other clones)" CHROMOSOME_V assembly_tag Clone 14257951 14257954 . + . Note "left end: F40G12" CHROMOSOME_V assembly_tag Clone 14257951 14257954 . + . Note "left end: F40G12" CHROMOSOME_V assembly_tag Finished 14257951 14257954 . + . Note "Left: F40G12" CHROMOSOME_V assembly_tag Finished 14258051 14258054 . + . Note "Right: K02E11" CHROMOSOME_V assembly_tag Clone 14265735 14265738 . + . Note "right end: K02E11" CHROMOSOME_V assembly_tag Finished 14289957 14289960 . + . Note "Left: F14D7" CHROMOSOME_V assembly_tag Clone 14289957 14289960 . + . Note "left end: Start of F14D7" CHROMOSOME_V assembly_tag Clone 14289957 14289960 . + . Note "left end: F14D7" CHROMOSOME_V assembly_tag Finished 14290057 14290060 . + . Note "Right: F40G12" CHROMOSOME_V assembly_tag Clone 14298801 14298804 . + . Note "right end: Probably the end of F40G12" CHROMOSOME_V assembly_tag Clone 14315929 14315932 . + . Note "left end: F47B8" CHROMOSOME_V assembly_tag Clone 14315929 14315932 . + . Note "left end: Start of F47B8" CHROMOSOME_V assembly_tag Clone 14315929 14315932 . + . Note "left end: Start of F47B8" CHROMOSOME_V assembly_tag Finished 14315929 14315932 . + . Note "Left: F47B8" CHROMOSOME_V assembly_tag Finished 14316029 14316032 . + . Note "Right: F14D7" CHROMOSOME_V assembly_tag Clone 14330083 14330086 . + . Note "right end: F14D7" CHROMOSOME_V assembly_tag Clone 14330083 14330086 . + . Note "right end: End of F14D7" CHROMOSOME_V assembly_tag annotation 14341620 14341630 . + . Note "Four well-resolved M13 reads over this\nregion of which 2 have 10 As and 2 have\n11 As." CHROMOSOME_V assembly_tag annotation 14341620 14341630 . + . Note "Four well-resolved M13 reads over this region of which 2 have 10 As and 2 have 11 As." CHROMOSOME_V assembly_tag Finished 14350724 14350727 . + . Note "Left: Y49A3A" CHROMOSOME_V assembly_tag annotation 14350779 14351225 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -tandem repeat with typical repeat element GATCAGAACATCAGAAGGTACCCATGT (270-mer). Size not determined." CHROMOSOME_V assembly_tag Clone 14350824 14350827 . + . Note "right end: F47B8" CHROMOSOME_V assembly_tag Finished 14350824 14350827 . + . Note "Right: F47B8" CHROMOSOME_V assembly_tag annotation 14351047 14351054 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[x] Forced join\n[ ] Other\nAdd a comment here -\nin tandem repeat region" CHROMOSOME_V assembly_tag Clone 14361184 14361187 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 14361184 14361187 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14361184 14361187 . + . Note "left end: F56A12" CHROMOSOME_V assembly_tag Finished 14361284 14361287 . + . Note "Right: Y49A3A" CHROMOSOME_V assembly_tag annotation 14363129 14363175 . + . Note "restriction digest confirms this single stranded region is OK" CHROMOSOME_V assembly_tag Clone 14387108 14387111 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14387108 14387111 . + . Note "left end: left end of C15H11" CHROMOSOME_V assembly_tag Finished 14387108 14387111 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14387208 14387211 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 14398596 14398599 . - . Note "right end: F56A12" CHROMOSOME_V assembly_tag annotation 14398893 14398968 . - . Note "cosmid PCR sequence, base called by eye\n" CHROMOSOME_V assembly_tag Finished 14428233 14428236 . + . Note "Left: VF23B12L" CHROMOSOME_V assembly_tag Clone 14428333 14428336 . + . Note "right end: C15H11" CHROMOSOME_V assembly_tag Finished 14428333 14428336 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 14428333 14428336 . - . Note "right end: C15H11" CHROMOSOME_V assembly_tag Clone 14431025 14431028 . + . Note "left end: F23B12" CHROMOSOME_V assembly_tag Finished 14431025 14431028 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14431025 14431028 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 14431125 14431128 . + . Note "Right: VF23B12L" CHROMOSOME_V assembly_tag Clone 14458718 14458721 . + . Note "left end: overlap f08h9" CHROMOSOME_V assembly_tag Finished 14458718 14458721 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14458718 14458721 . + . Note "left end: overlap f08h9" CHROMOSOME_V assembly_tag Finished 14458818 14458821 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14469142 14469145 . + . Note "right end: left overlap" CHROMOSOME_V assembly_tag Clone 14469142 14469145 . + . Note "right end: righthand end f23b12" CHROMOSOME_V assembly_tag annotation 14469538 14469554 . + . Note "number of G's may not be accurate" CHROMOSOME_V assembly_tag Clone 14482350 14482355 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14482350 14482355 . + . Note "left end: overlap right end" CHROMOSOME_V assembly_tag Clone 14482350 14482355 . + . Note "left end: R02D5" CHROMOSOME_V assembly_tag Finished 14482350 14482355 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14482452 14482455 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14498382 14498385 . + . Note "right end: F08H9" CHROMOSOME_V assembly_tag Clone 14498382 14498385 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 14523322 14523325 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14523322 14523325 . + . Note "left end: C53A5" CHROMOSOME_V assembly_tag Finished 14523322 14523325 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14523422 14523425 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14526273 14526278 . + . Note "right end: R02D5" CHROMOSOME_V assembly_tag Finished 14569698 14569701 . + . Note "Left: Y40H4A" CHROMOSOME_V assembly_tag Clone 14569798 14569801 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 14569798 14569801 . + . Note "right end: C53A5" CHROMOSOME_V assembly_tag Finished 14569798 14569801 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 14588596 14591173 . + . Note "tandem repeat, size undetermined.\nTypical repeat element is CCCTTACTTTTGAATTTTTGAAAATAGCAGCTTTTGGTTAAATTCTGAATTTTTAAAAATTAACTT (65-mer)" CHROMOSOME_V assembly_tag annotation 14591074 14595969 . + . Note "tandem repeat, size undetermined.\nTypical repeat element is CCCATACTTTTGAATTTTTGAAAATAATAGCTTCTGGTTAATTTCTGAATTTTTAAAAATTAACTT (65-mer)" CHROMOSOME_V assembly_tag Finished 14595864 14595869 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14595864 14595869 . + . Note "left end: R11H6" CHROMOSOME_V assembly_tag Clone 14595864 14595869 . + . Note "left end: left end of R11H6" CHROMOSOME_V assembly_tag Finished 14595966 14595969 . + . Note "Right: Y40H4A" CHROMOSOME_V assembly_tag annotation 14603254 14603259 . + . Note "Think This is CAAATAAAATGCAC\n\nfrom Rachy Raych" CHROMOSOME_V assembly_tag Finished 14615144 14615147 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14615144 14615147 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14615144 14615147 . + . Note "left end: left end of F43D2" CHROMOSOME_V assembly_tag Finished 14615243 14615246 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 14629168 14629173 . - . Note "right end: right end of R11H6" CHROMOSOME_V assembly_tag Finished 14642817 14642820 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14642817 14642820 . + . Note "left end: C54G10" CHROMOSOME_V assembly_tag Clone 14642817 14642820 . + . Note "left end: C54G10" CHROMOSOME_V assembly_tag Finished 14642917 14642920 . - . Note "Right: " CHROMOSOME_V assembly_tag Finished 14663920 14663923 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14663920 14663923 . + . Note "left end: C47E8" CHROMOSOME_V assembly_tag Clone 14663920 14663923 . + . Note "left end: C47E8" CHROMOSOME_V assembly_tag Clone 14663920 14663923 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 14664020 14664023 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14680796 14680799 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 14680796 14680799 . + . Note "right end: C54G10" CHROMOSOME_V assembly_tag Finished 14708190 14708193 . + . Note "Left: R08A2" CHROMOSOME_V assembly_tag Clone 14708287 14708290 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 14708287 14708290 . + . Note "right end: C47E8" CHROMOSOME_V assembly_tag Clone 14708287 14708290 . + . Note "right end: C47E8" CHROMOSOME_V assembly_tag Finished 14708287 14708290 . - . Note "Right: " CHROMOSOME_V assembly_tag repeat 14712041 14712624 . + . CHROMOSOME_V assembly_tag repeat 14713067 14713651 . - . CHROMOSOME_V assembly_tag cosmid 14715634 14715642 . + . Note "vector: " CHROMOSOME_V assembly_tag cosmid 14720312 14720324 . + . Note "vector: " CHROMOSOME_V assembly_tag Finished 14727582 14727587 . + . Note "Left: Y50E8A" CHROMOSOME_V assembly_tag Clone 14727682 14727687 . + . Note "right end: R08A2" CHROMOSOME_V assembly_tag cosmid 14727682 14727687 . + . Note "vector: CAF:End=Right::pjb8" CHROMOSOME_V assembly_tag Clone 14727682 14727687 . + . Note "right end: R08A2" CHROMOSOME_V assembly_tag Finished 14727684 14727687 . + . Note "Right: R08A2" CHROMOSOME_V assembly_tag cosmid 14727681 14727687 . - . Note "vector: " CHROMOSOME_V assembly_tag annotation 14727856 14727885 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Single direction primer reads only." CHROMOSOME_V assembly_tag oligo 14731817 14731834 . - . Note "serial#=Y50E8.3 template=pa31g5 sequence=TTTATTTCGTTGCGTCTC flags= " CHROMOSOME_V assembly_tag oligo 14733200 14733216 . - . Note "serial#=Y50E8.4 template=pa30h12 sequence=GCGAGGTGGTTTACTTG flags= " CHROMOSOME_V assembly_tag annotation 14744194 14747751 . + . Note "First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [X] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Contains single clone regions." CHROMOSOME_V assembly_tag oligo 14748137 14748154 . - . Note "serial#=Y50E8.2 template=Y50E8a1 sequence=TACCAGTTTTATGACCAG flags= " CHROMOSOME_V assembly_tag oligo 14756000 14756017 . - . Note "serial#=Y50E8.5 template=pa28d3 sequence=GAAGTTTGAGAAGACGAC flags= " CHROMOSOME_V assembly_tag oligo 14757467 14757485 . + . Note "serial#=Y50E8.8 template= sequence= CTCTCTGTGGCTTCCCAAA flags=" CHROMOSOME_V assembly_tag annotation 14757490 14760114 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Contains single clone regions" CHROMOSOME_V assembly_tag oligo 14758188 14758205 . - . Note "serial#=Y50E8.9 template= sequence=GTAAAATATGGTGGGAAG flags= " CHROMOSOME_V assembly_tag oligo 14760395 14760412 . - . Note "serial#=Y50E8.1 template=Pa28f4 sequence=GCTTTGTCCGTATTTCTC flags= " CHROMOSOME_V assembly_tag annotation 14764943 14765010 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_V assembly_tag annotation 14765033 14765102 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_V assembly_tag oligo 14765209 14765225 . - . Note "serial#=Y50E8.6 template=qb86d6 sequence=GAGGTAAGGGGATTTTC flags= " CHROMOSOME_V assembly_tag oligo 14768980 14768997 . + . Note "serial#=Y50E8.7 template=pa46h11 sequence=AACCACTGTTGTTTTCTC flags= " CHROMOSOME_V assembly_tag annotation 14770850 14772337 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_V assembly_tag Clone 14789342 14789344 . + . Note "left end: C48G7" CHROMOSOME_V assembly_tag Clone 14789342 14789345 . + . Note "left end: C48G7" CHROMOSOME_V assembly_tag Finished 14789342 14789345 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14789442 14789445 . + . Note "Right: Y50E8A" CHROMOSOME_V assembly_tag Clone 14819847 14819854 . + . Note "left end: W06A7" CHROMOSOME_V assembly_tag Finished 14819847 14819854 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14819847 14819854 . + . Note "left end: W06A7" CHROMOSOME_V assembly_tag Clone 14819847 14819854 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14819847 14819854 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 14819946 14819949 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14830760 14830763 . + . Note "right end: C48G7" CHROMOSOME_V assembly_tag Clone 14830760 14830763 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 14846984 14846989 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14846984 14846989 . + . Note "left end: ZC412" CHROMOSOME_V assembly_tag Clone 14846984 14846989 . + . Note "left end: ZC412" CHROMOSOME_V assembly_tag Finished 14847086 14847089 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 14849751 14849760 . + . Note "some reads have 10 Ts some 11, is not cosmid specific so edit to 11" CHROMOSOME_V assembly_tag Clone 14856953 14856958 . + . Note "right end: right end of W06A7" CHROMOSOME_V assembly_tag annotation 14882478 14882481 . + . Note "putative site of end of overlap between ZC412 and W02B4" CHROMOSOME_V assembly_tag annotation 14883036 14883038 . + . CHROMOSOME_V assembly_tag Finished 14884475 14884478 . + . Note "Left: H12D21" CHROMOSOME_V assembly_tag Clone 14884573 14884578 . + . Note "right end: right end of ZC412 overlapping W02B4" CHROMOSOME_V assembly_tag Finished 14884573 14884578 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14884573 14884578 . + . Note "right end: ZC412" CHROMOSOME_V assembly_tag annotation 14899223 14899282 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsize confirmed by restriction digest" CHROMOSOME_V assembly_tag Clone 14919384 14919387 . + . Note "left end: W09D12" CHROMOSOME_V assembly_tag Finished 14919384 14919391 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14919384 14919391 . + . Note "left end: W09D12" CHROMOSOME_V assembly_tag Finished 14919488 14919491 . + . Note "Right: H12D21" CHROMOSOME_V assembly_tag Clone 14938193 14938196 . + . Note "left end: C30G7" CHROMOSOME_V assembly_tag Finished 14938193 14938196 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14938193 14938196 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14938193 14938196 . + . Note "left end: C30G7" CHROMOSOME_V assembly_tag Finished 14938293 14938296 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 14955401 14955421 . - . Note "probably 21 Cs/Gs" CHROMOSOME_V assembly_tag Clone 14957688 14957691 . + . Note "left end: F02D8" CHROMOSOME_V assembly_tag Clone 14957688 14957691 . + . Note "left end: F02D8" CHROMOSOME_V assembly_tag Finished 14957688 14957691 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14957789 14957792 . - . Note "Right: " CHROMOSOME_V assembly_tag polymorphism 14974252 14974267 . + . Note "16 G's in F02D8; 15 G's in C30G7" CHROMOSOME_V assembly_tag annotation 14974252 14974267 . + . CHROMOSOME_V assembly_tag Clone 14978020 14978023 . + . Note "right end: right end of C30G7" CHROMOSOME_V assembly_tag Clone 14989208 14989211 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 14989208 14989211 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14989208 14989211 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14989208 14989211 . + . Note "left end: T01C3" CHROMOSOME_V assembly_tag Finished 14989308 14989311 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15001226 15001229 . + . Note "right end: F02D8" CHROMOSOME_V assembly_tag Clone 15001226 15001229 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 15012314 15012317 . + . Note "left end: F14H8" CHROMOSOME_V assembly_tag Clone 15012314 15012317 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 15012314 15012317 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15012314 15012317 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 15012414 15012417 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15022712 15022715 . - . Note "right end: " CHROMOSOME_V assembly_tag Clone 15035142 15035145 . - . Note "left end: C25D7??" CHROMOSOME_V assembly_tag Clone 15035142 15035145 . - . Note "left end: " CHROMOSOME_V assembly_tag Clone 15035142 15035145 . - . Note "left end: C25D7??" CHROMOSOME_V assembly_tag Finished 15035142 15035145 . - . Note "Left: " CHROMOSOME_V assembly_tag Finished 15035242 15035245 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15054784 15054787 . - . Note "right end: " CHROMOSOME_V assembly_tag Finished 15070591 15070594 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15070591 15070594 . + . Note "left end: C01G10" CHROMOSOME_V assembly_tag Finished 15077499 15077502 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15077499 15077502 . + . Note "right end: C25D7" CHROMOSOME_V assembly_tag Clone 15077499 15077502 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 15109157 15109160 . + . Note "Left: Y75B12A" CHROMOSOME_V assembly_tag Clone 15109258 15109261 . + . Note "right end: C01G10" CHROMOSOME_V assembly_tag Finished 15109258 15109261 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15109258 15109261 . - . Note "right end: C01G10" CHROMOSOME_V assembly_tag repeat 15109157 15109275 . - . Note "Repeats with contig us80h11.p2c1, offset 200\n" CHROMOSOME_V assembly_tag oligo 15109304 15109322 . + . Note "serial#=Y75B12-01\ntemplate=us80h10\nsequence=GTAGAGTGTCACAAATAAC\nflags=\n" CHROMOSOME_V assembly_tag comment 15109323 15109329 . + . Note "?Oligo in repeat thats why didn't work" CHROMOSOME_V assembly_tag repeat 15109277 15109436 . - . Note "Repeats with contig us80h11.p2c1, offset 38\n" CHROMOSOME_V assembly_tag repeat 15109506 15109534 . - . Note "Repeats with contig C01G10.00001, offset 39025\n" CHROMOSOME_V assembly_tag oligo 15109551 15109572 . + . Note "serial#=Y75B12-05\ntemplate=us80h10\nsequence=GATTGGAGCTTCATTATTTTTG\nflags=\n" CHROMOSOME_V assembly_tag repeat 15109605 15109633 . - . Note "Repeats with contig C01G10.00001, offset 38926\n" CHROMOSOME_V assembly_tag comment 15109697 15109702 . + . Note "?END of repeat can make oligo ->" CHROMOSOME_V assembly_tag repeat 15109666 15109702 . - . Note "Repeats with contig uu30e5.p1, offset 72258\n" CHROMOSOME_V assembly_tag repeat 15109666 15109862 . - . Note "Repeats with contig uv73h12.p1, offset 8573\n" CHROMOSOME_V assembly_tag repeat 15109703 15109862 . - . Note "Repeats with contig C01G10.00001, offset 38697\n" CHROMOSOME_V assembly_tag cosmid 15109853 15109912 . - . Note "vector: " CHROMOSOME_V assembly_tag repeat 15109865 15110004 . - . Note "Repeats with contig C01G10.00001, offset 38556\n" CHROMOSOME_V assembly_tag repeat 15109865 15110004 . - . Note "Repeats with contig uv73h12.p1, offset 8431\n" CHROMOSOME_V assembly_tag repeat 15110006 15110106 . - . Note "Repeats with contig uv73h12.p1, offset 8329\n" CHROMOSOME_V assembly_tag repeat 15110006 15110106 . - . Note "Repeats with contig C01G10.00001, offset 38454\n" CHROMOSOME_V assembly_tag comment 15110120 15110122 . - . Note "?End of repeat oligo worked b/c outside\nrepeat" CHROMOSOME_V assembly_tag stop 15110124 15110127 . + . CHROMOSOME_V assembly_tag repeat 15109703 15110144 . - . Note "Repeats with contig uv65d6.q1t, offset 1\n" CHROMOSOME_V assembly_tag repeat 15109703 15110144 . - . Note "Repeats with contig us81b12.q1tU, offset 93904\n" CHROMOSOME_V assembly_tag repeat 15109703 15110144 . - . Note "Repeats with contig us80h11.p2c1, offset 38\n" CHROMOSOME_V assembly_tag oligo 15110144 15110161 . - . Note "serial#=Y75B12-04\ntemplate=uv67b7\nsequence=GTTATTCACCAGTTGCTC\nflags=\n" CHROMOSOME_V assembly_tag cosmid 15111109 15111122 . - . Note "vector: " CHROMOSOME_V assembly_tag cosmid 15111230 15111251 . + . Note "vector: " CHROMOSOME_V assembly_tag repeat 15111536 15111590 . - . Note "Repeats with contig C01G10.00001, offset 38387\n" CHROMOSOME_V assembly_tag repeat 15111592 15111665 . - . Note "Repeats with contig C01G10.00001, offset 38312\n" CHROMOSOME_V assembly_tag repeat 15111684 15111794 . - . Note "Repeats with contig C01G10.00001, offset 38183\n" CHROMOSOME_V assembly_tag Clone 15112328 15112331 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 15112328 15112331 . + . Note "left end: T01G5" CHROMOSOME_V assembly_tag Finished 15112328 15112331 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 15112428 15112431 . - . Note "Right: Y75B12A" CHROMOSOME_V assembly_tag annotation 15114363 15114378 . + . Note "Some clones read 15 A's some read 16.\nI edited it to 16!" CHROMOSOME_V assembly_tag Clone 15134870 15134873 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 15134870 15134873 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15134870 15134873 . + . Note "left end: K08F9" CHROMOSOME_V assembly_tag Finished 15134970 15134973 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 15135677 15135851 . + . Note "cosmid PCR sequence\nbase count is accurate but base \ncalling was difficult due to inverted\nrepeat" CHROMOSOME_V assembly_tag Clone 15148382 15148385 . + . Note "left end: T09F5" CHROMOSOME_V assembly_tag Clone 15148382 15148385 . + . Note "left end: T09F5" CHROMOSOME_V assembly_tag Finished 15148382 15148385 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 15148476 15148479 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 15174881 15174884 . + . Note "right end: K08F9" CHROMOSOME_V assembly_tag Finished 15185790 15185793 . + . Note "Left: Y75B12B" CHROMOSOME_V assembly_tag Clone 15185890 15185893 . + . Note "right end: T09F5" CHROMOSOME_V assembly_tag Finished 15185890 15185893 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15185890 15185893 . - . Note "right end: T09F5" CHROMOSOME_V assembly_tag stop 15187982 15187983 . + . CHROMOSOME_V assembly_tag stop 15188596 15188598 . - . CHROMOSOME_V assembly_tag stop 15188961 15188963 . + . CHROMOSOME_V assembly_tag repeat 15189361 15189411 . - . Note "Repeats with contig us80h11.p2c1, offset 83748\n" CHROMOSOME_V assembly_tag stop 15189456 15189457 . - . CHROMOSOME_V assembly_tag repeat 15189416 15189465 . - . Note "Repeats with contig us80h11.p2c1, offset 83694\n" CHROMOSOME_V assembly_tag repeat 15189593 15189675 . - . Note "Repeats with contig us80h11.p2c1, offset 83288\n" CHROMOSOME_V assembly_tag repeat 15189677 15189708 . - . Note "Repeats with contig us80h11.p2c1, offset 83255\n" CHROMOSOME_V assembly_tag repeat 15189728 15189759 . - . Note "Repeats with contig us80h11.p2c1, offset 83204\n" CHROMOSOME_V assembly_tag cosmid 15190308 15190322 . + . Note "vector: " CHROMOSOME_V assembly_tag stop 15192447 15192449 . + . CHROMOSOME_V assembly_tag cosmid 15192460 15192473 . + . Note "vector: " CHROMOSOME_V assembly_tag repeat 15192743 15192774 . - . Note "Repeats with contig us80h11.p2c1, offset 80189\n" CHROMOSOME_V assembly_tag repeat 15192794 15192825 . - . Note "Repeats with contig us80h11.p2c1, offset 80138\n" CHROMOSOME_V assembly_tag repeat 15192827 15192909 . - . Note "Repeats with contig us80h11.p2c1, offset 80054\n" CHROMOSOME_V assembly_tag repeat 15193233 15193282 . - . Note "Repeats with contig us80h11.p2c1, offset 79877\n" CHROMOSOME_V assembly_tag repeat 15193287 15193337 . - . Note "Repeats with contig us80h11.p2c1, offset 79822\n" CHROMOSOME_V assembly_tag cosmid 15193985 15193993 . + . Note "vector: " CHROMOSOME_V assembly_tag stop 15194662 15194663 . + . CHROMOSOME_V assembly_tag cosmid 15195529 15195534 . + . Note "vector: " CHROMOSOME_V assembly_tag stop 15196971 15196972 . + . CHROMOSOME_V assembly_tag stop 15197177 15197179 . + . CHROMOSOME_V assembly_tag stop 15197241 15197242 . - . CHROMOSOME_V assembly_tag stop 15198263 15198266 . + . CHROMOSOME_V assembly_tag stop 15198395 15198397 . - . CHROMOSOME_V assembly_tag cosmid 15199032 15199086 . + . Note "vector: " CHROMOSOME_V assembly_tag cosmid 15200262 15200282 . - . Note "vector: " CHROMOSOME_V assembly_tag oligo 15202660 15202679 . + . Note "serial#=Y75B12-03\ntemplate=uv67a8\nsequence=CTATTCCACATTTCACTAAC\nflags=\n" CHROMOSOME_V assembly_tag Sequence 15202733 15202736 . + . Note "Feature: Diverge <-\nRepeat ->" CHROMOSOME_V assembly_tag Finisher 15202737 15203656 . + . Note "comment: " CHROMOSOME_V assembly_tag repeat 15202737 15203292 . - . Note "Repeats with contig uu30e5.p1, offset 7262\n" CHROMOSOME_V assembly_tag repeat 15203314 15203383 . - . Note "Repeats with contig uu30e5.p1, offset 7171\n" CHROMOSOME_V assembly_tag repeat 15203408 15203433 . - . Note "Repeats with contig uu30e5.p1, offset 7121\n" CHROMOSOME_V assembly_tag comment 15203831 15203837 . + . Note "?In right place b/c .q1 before repeat" CHROMOSOME_V assembly_tag repeat 15203461 15204255 . - . Note "Repeats with contig uu30e5.p1, offset 6299\n" CHROMOSOME_V assembly_tag repeat 15204268 15204412 . - . Note "Repeats with contig uu30e5.p1, offset 6142\n" CHROMOSOME_V assembly_tag repeat 15204414 15204585 . - . Note "Repeats with contig uu30e5.p1, offset 5969\n" CHROMOSOME_V assembly_tag stop 15204686 15204688 . + . CHROMOSOME_V assembly_tag repeat 15205588 15205741 . - . Note "Repeats with contig us80a1.q1tU, offset 302\n" CHROMOSOME_V assembly_tag stop 15205848 15205850 . + . CHROMOSOME_V assembly_tag repeat 15205441 15206348 . - . Note "Repeats with contig uu30e5.p1, offset 4206\n" CHROMOSOME_V assembly_tag repeat 15206361 15206465 . - . Note "Repeats with contig uu30e5.p1, offset 4089\n" CHROMOSOME_V assembly_tag repeat 15206468 15206640 . - . Note "Repeats with contig uu30e5.p1, offset 3914\n" CHROMOSOME_V assembly_tag repeat 15206642 15206674 . - . Note "Repeats with contig uu30e5.p1, offset 3880\n" CHROMOSOME_V assembly_tag cosmid 15207337 15207396 . + . Note "vector: " CHROMOSOME_V assembly_tag repeat 15206703 15207343 . - . Note "Repeats with contig uu30e5.p1, offset 3211\n" CHROMOSOME_V assembly_tag repeat 15207438 15207640 . - . Note "Repeats with contig uu30e5.p1, offset 3002\n" CHROMOSOME_V assembly_tag repeat 15208442 15208644 . - . Note "Repeats with contig uu30e5.p1, offset 1998\n" CHROMOSOME_V assembly_tag repeat 15208651 15209291 . - . Note "Repeats with contig uu30e5.p1, offset 1263\n" CHROMOSOME_V assembly_tag repeat 15209320 15209352 . - . Note "Repeats with contig uu30e5.p1, offset 1202\n" CHROMOSOME_V assembly_tag repeat 15209354 15209526 . - . Note "Repeats with contig uu30e5.p1, offset 1028\n" CHROMOSOME_V assembly_tag Clone 15209594 15209597 . + . Note "left end: C41G6" CHROMOSOME_V assembly_tag Finished 15209594 15209597 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15209594 15209597 . - . Note "left end: " CHROMOSOME_V assembly_tag repeat 15209529 15209633 . - . Note "Repeats with contig uu30e5.p1, offset 921\n" CHROMOSOME_V assembly_tag repeat 15209646 15209695 . - . Note "Repeats with contig uu30e5.p1, offset 1\n" CHROMOSOME_V assembly_tag Finished 15209692 15209695 . - . Note "Right: Y75B12B" CHROMOSOME_V assembly_tag annotation 15213935 15213935 . + . CHROMOSOME_V assembly_tag annotation 15213941 15213941 . + . CHROMOSOME_V assembly_tag Clone 15232952 15232955 . + . Note "right end: " CHROMOSOME_V assembly_tag annotation 15236699 15236717 . + . Note "terminator used for base count in\ndouble stranding only" CHROMOSOME_V assembly_tag Finished 15240927 15240930 . + . Note "Left: M01B2" CHROMOSOME_V assembly_tag Clone 15240927 15240930 . - . Note "left end: M01B2" CHROMOSOME_V assembly_tag Clone 15240927 15240930 . - . Note "left end: M01B2" CHROMOSOME_V assembly_tag Finished 15241027 15241030 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15259048 15259053 . + . Note "right end: R10G11" CHROMOSOME_V assembly_tag Clone 15267836 15267839 . + . Note "left end: T10H4" CHROMOSOME_V assembly_tag Finished 15267836 15267839 . + . Note "Left: T10H4" CHROMOSOME_V assembly_tag Finished 15267836 15267839 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 15267936 15267939 . + . Note "Right: M01B2" CHROMOSOME_V assembly_tag Finished 15301051 15301054 . + . Note "Left: T26H8" CHROMOSOME_V assembly_tag Clone 15301051 15301054 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 15301051 15301054 . + . Note "left end: T26H8\n" CHROMOSOME_V assembly_tag Finished 15301151 15301154 . + . Note "Right: T10H4" CHROMOSOME_V assembly_tag Finished 15301151 15301154 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15307592 15307595 . + . Note "right end: T10H4" CHROMOSOME_V assembly_tag Clone 15310995 15310998 . + . Note "left end: ZK1037" CHROMOSOME_V assembly_tag Finished 15310995 15310998 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15310995 15310998 . - . Note "left end: " CHROMOSOME_V assembly_tag Finished 15311095 15311098 . - . Note "Right: T26H8" CHROMOSOME_V assembly_tag annotation 15323369 15323809 . + . Note "15 copies of 40bp repeat" CHROMOSOME_V assembly_tag annotation 15324042 15324889 . + . Note "Minimum 57 copies of 15bp repeat.\nTGGGTCTCACCACGA, restriction data\nsuggests there may be approximately\n900bp of this repeat missing,\nequivalent to 60 copies." CHROMOSOME_V assembly_tag annotation 15324267 15324353 . + . Note "single stranded only in this part\nof the repeat" CHROMOSOME_V assembly_tag annotation 15324317 15324383 . + . Note "single stranded only in this part of \nthe repeat." CHROMOSOME_V assembly_tag annotation 15324889 15324897 . + . CHROMOSOME_V assembly_tag Finished 15341282 15341285 . + . Note "Left: H02K04" CHROMOSOME_V assembly_tag Finished 15341383 15341386 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15341383 15341386 . - . Note "right end: ZK1037" CHROMOSOME_V assembly_tag Clone 15344965 15344968 . + . Note "left end: C29F3" CHROMOSOME_V assembly_tag Clone 15344965 15344968 . + . Note "left end: C29F3" CHROMOSOME_V assembly_tag Finished 15344965 15344968 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 15345070 15345074 . - . Note "Right: H02K04" CHROMOSOME_V assembly_tag Finished 15363493 15363498 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15363493 15363498 . + . Note "left end: R08H2" CHROMOSOME_V assembly_tag Clone 15363493 15363499 . + . Note "left end: R08H2" CHROMOSOME_V assembly_tag Finished 15363593 15363596 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15386290 15386293 . + . Note "right end: C29F3" CHROMOSOME_V assembly_tag Clone 15392692 15392695 . + . Note "left end: T06E6" CHROMOSOME_V assembly_tag Finished 15392692 15392695 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15392692 15392695 . + . Note "left end: T06E6" CHROMOSOME_V assembly_tag Polymorphism 15392754 15392754 . + . Note "T in R08H2, C in T06E6" CHROMOSOME_V assembly_tag Finished 15392792 15392795 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15395395 15395400 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 15425826 15425829 . + . Note "Left: Y36E3A" CHROMOSOME_V assembly_tag Clone 15425926 15425929 . + . Note "right end: T06E6" CHROMOSOME_V assembly_tag Clone 15425926 15425929 . - . Note "right end: T06E6" CHROMOSOME_V assembly_tag Finished 15425926 15425929 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 15434254 15434257 . + . Note "left end: T26H5" CHROMOSOME_V assembly_tag Finished 15434254 15434257 . + . Note "Left: T26H5" CHROMOSOME_V assembly_tag Clone 15434254 15434257 . - . Note "left end: T26H5" CHROMOSOME_V assembly_tag Finished 15434354 15434357 . + . Note "Right: Y36E3A" CHROMOSOME_V assembly_tag Finished 15453886 15453889 . + . Note "Left: T23F1" CHROMOSOME_V assembly_tag annotation 15453886 15453903 . + . Note "PLEASE NOTE THAT THIS COSMID IS \nSLIGHTLY SMALL\nPLEASE BE AWARE OF THIS." CHROMOSOME_V assembly_tag Clone 15453886 15453889 . - . Note "left end: T23F1" CHROMOSOME_V assembly_tag Clone 15453886 15453889 . - . Note "left end: START OF T23F1" CHROMOSOME_V assembly_tag Finished 15453986 15453989 . + . Note "Right: T26H5" CHROMOSOME_V assembly_tag Clone 15469128 15469131 . + . Note "right end: END OF T26H5" CHROMOSOME_V assembly_tag Clone 15479127 15479130 . + . Note "left end: left end of C06B8" CHROMOSOME_V assembly_tag Finished 15479127 15479130 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15479127 15479130 . - . Note "left end: C06B8" CHROMOSOME_V assembly_tag Finished 15479227 15479230 . + . Note "Right: T23F1" CHROMOSOME_V assembly_tag Clone 15486702 15486705 . + . Note "right end: " CHROMOSOME_V assembly_tag annotation 15487312 15487344 . + . Note "The length of this repeat is confirmed\nby restriction digest." CHROMOSOME_V assembly_tag comment 15510997 15510997 . + . Note "tcatgtgagacaacg > tcatgtggacaacg\njes 30-12-01" CHROMOSOME_V assembly_tag annotation 15516908 15516929 . - . Note "This area is covered by a single clone\nRestriction digest confirms assembly" CHROMOSOME_V assembly_tag Clone 15517884 15517887 . + . Note "left end: F21A3" CHROMOSOME_V assembly_tag Clone 15517884 15517887 . + . Note "left end: F21A3" CHROMOSOME_V assembly_tag Finished 15517884 15517887 . + . Note "Left: F21A3" CHROMOSOME_V assembly_tag Finished 15517984 15517987 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 15548584 15548705 . + . Note "bases 30701 - 30822 are covered by a \nsingle sub-clone which was sonicated\ninto approx .5 - .7 kb fragments and\nrecloned into pUC18" CHROMOSOME_V assembly_tag Finished 15549876 15549879 . + . Note "Left: F28F8" CHROMOSOME_V assembly_tag Clone 15549876 15549879 . + . Note "left end: F28F8" CHROMOSOME_V assembly_tag Clone 15549876 15549879 . + . Note "left end: F28F8" CHROMOSOME_V assembly_tag Finished 15549976 15549979 . + . Note "Right: F21A3" CHROMOSOME_V assembly_tag Clone 15556306 15556309 . + . Note "right end: F21A3" CHROMOSOME_V assembly_tag annotation 15589215 15589224 . + . Note "This join is made in a tandem repeat\nacross bases 38690 - 41540. \nThe join is not confirmed in any other way but the size of the cosmid has been confirmed by restriction digest." CHROMOSOME_V assembly_tag Finished 15592166 15592169 . + . Note "Left: B0391" CHROMOSOME_V assembly_tag Clone 15592263 15592266 . + . Note "right end: F28F8" CHROMOSOME_V assembly_tag Finished 15592263 15592266 . + . Note "Right: F28F8" CHROMOSOME_V assembly_tag Clone 15592263 15592266 . + . Note "right end: F28F8" CHROMOSOME_V assembly_tag Finished 15621793 15621796 . + . Note "Left: VB0391R" CHROMOSOME_V assembly_tag Finished 15621893 15621896 . + . Note "Right: B0391" CHROMOSOME_V assembly_tag Clone 15621893 15621896 . + . Note "right end: B0391" CHROMOSOME_V assembly_tag Clone 15621893 15621896 . - . Note "right end: B0391" CHROMOSOME_V assembly_tag Clone 15622688 15622691 . + . Note "left end: C55A1" CHROMOSOME_V assembly_tag Finished 15622688 15622691 . + . Note "Left: C55A1" CHROMOSOME_V assembly_tag Clone 15622688 15622691 . - . Note "left end: C55A1" CHROMOSOME_V assembly_tag Finished 15622789 15622792 . + . Note "Right: VB0391R" CHROMOSOME_V assembly_tag Finished 15655786 15655789 . + . Note "Left: F53E4" CHROMOSOME_V assembly_tag Finished 15655786 15655789 . + . Note "Left: F53E4" CHROMOSOME_V assembly_tag Clone 15655786 15655789 . + . Note "left end: F53E4" CHROMOSOME_V assembly_tag Clone 15655786 15655789 . + . Note "left end: F53E4" CHROMOSOME_V assembly_tag Finished 15655886 15655889 . + . Note "Right: C55A1" CHROMOSOME_V assembly_tag annotation 15656395 15656399 . + . Note "The join is confirmed by the walk from the cosmid pcr (read no 896) which clearly begins at the correct pcr.\nThe pcr size was confirmed by an\nagarose gel." CHROMOSOME_V assembly_tag Clone 15671764 15671767 . + . Note "left end: K06B4" CHROMOSOME_V assembly_tag Clone 15671764 15671767 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 15671764 15671767 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15671764 15671767 . - . Note "left end: Beginning of K06B4" CHROMOSOME_V assembly_tag Finished 15671864 15671867 . + . Note "Right: F53E4" CHROMOSOME_V assembly_tag annotation 15683511 15687373 . + . Note "Tandem repeats 158 base pairs long.\nRestriction digest indicates that the \nsize of this region is correct.\nHowever, discrepancies between reads \nhave been edited." CHROMOSOME_V assembly_tag Clone 15694690 15694693 . - . Note "right end: End of F53E4" CHROMOSOME_V assembly_tag Finished 15711585 15711588 . + . Note "Left: Y6E2A\n\n" CHROMOSOME_V assembly_tag Clone 15711685 15711688 . + . Note "right end: K06B4" CHROMOSOME_V assembly_tag Clone 15711685 15711688 . + . Note "right end: End of K06B4" CHROMOSOME_V assembly_tag Finished 15711685 15711688 . + . Note "Right: K06B4" CHROMOSOME_V assembly_tag Clone 15711685 15711688 . + . Note "left end: Y6E2A" CHROMOSOME_V assembly_tag Finished 15733858 15733861 . + . Note "Left: T23D5" CHROMOSOME_V assembly_tag Clone 15733858 15733861 . + . Note "left end: T23D5" CHROMOSOME_V assembly_tag Clone 15733858 15733861 . + . Note "right end: Y6E2A" CHROMOSOME_V assembly_tag Clone 15733858 15733861 . + . Note "left end: start of T23D5" CHROMOSOME_V assembly_tag Finished 15733958 15733961 . - . Note "Right: Y6E2A\n" CHROMOSOME_V assembly_tag Finished 15760134 15760137 . + . Note "Left: F57A10" CHROMOSOME_V assembly_tag Clone 15760134 15760137 . + . Note "left end: Beginning of F57A10" CHROMOSOME_V assembly_tag Clone 15760134 15760137 . + . Note "left end: F57A10" CHROMOSOME_V assembly_tag Finished 15760234 15760237 . + . Note "Right: T23D5" CHROMOSOME_V assembly_tag annotation 15765381 15765388 . + . Note "edited to maximum number of T's - 12\nthough 1/2 the m13 clones say 11" CHROMOSOME_V assembly_tag Clone 15768239 15768242 . + . Note "right end: END OF T23D5" CHROMOSOME_V assembly_tag Finished 15777724 15777727 . + . Note "Left: T26E4" CHROMOSOME_V assembly_tag Clone 15777724 15777727 . + . Note "left end: T26E4" CHROMOSOME_V assembly_tag Finished 15777724 15777727 . - . Note "Left: T26E4" CHROMOSOME_V assembly_tag Clone 15777724 15777727 . - . Note "left end: T26E4" CHROMOSOME_V assembly_tag Finished 15777821 15777824 . + . Note "Right: F57A10" CHROMOSOME_V assembly_tag Finished 15813104 15813107 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 15813204 15813207 . + . Note "Right: T26E4" CHROMOSOME_V assembly_tag Clone 15813204 15813207 . + . Note "right end: T26E4" CHROMOSOME_V assembly_tag Clone 15813204 15813207 . - . Note "right end: T26E4 clone right end" CHROMOSOME_V assembly_tag Finished 15841829 15841832 . + . Note "Left: K08G2" CHROMOSOME_V assembly_tag Clone 15841829 15841832 . + . Note "left end: Beginning of K08G2" CHROMOSOME_V assembly_tag Clone 15841829 15841832 . - . Note "left end: K08G2 clone left end" CHROMOSOME_V assembly_tag Finished 15841929 15841932 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 15869338 15869341 . + . Note "Left: T06C12" CHROMOSOME_V assembly_tag Clone 15869338 15869341 . + . Note "left end: T06C12" CHROMOSOME_V assembly_tag Clone 15869338 15869341 . + . Note "left end: Beginning of T06C12" CHROMOSOME_V assembly_tag Finished 15869438 15869441 . + . Note "Right: K08G2" CHROMOSOME_V assembly_tag annotation 15894392 15894401 . + . Note "variable number of A's" CHROMOSOME_V assembly_tag Finished 15906591 15906594 . + . Note "Left: F35E8" CHROMOSOME_V assembly_tag Clone 15906691 15906694 . + . Note "right end: T06C12" CHROMOSOME_V assembly_tag Finished 15906691 15906694 . + . Note "Right: T06C12" CHROMOSOME_V assembly_tag Clone 15906691 15906694 . + . Note "right end: T06C12" CHROMOSOME_V assembly_tag Clone 15907914 15907917 . + . Note "left end: T05G11" CHROMOSOME_V assembly_tag Finished 15930089 15930092 . + . Note "Left: T05G11" CHROMOSOME_V assembly_tag Clone 15930189 15930192 . + . Note "right end: F35E8" CHROMOSOME_V assembly_tag Clone 15930189 15930192 . + . Note "right end: F35E8" CHROMOSOME_V assembly_tag Finished 15930189 15930192 . + . Note "Right: F35E8" CHROMOSOME_V assembly_tag Finished 15946265 15946268 . + . Note "Left: H24D24" CHROMOSOME_V assembly_tag Finished 15946365 15946368 . + . Note "Right: T05G11" CHROMOSOME_V assembly_tag Clone 15946365 15946368 . + . Note "right end: T05G11" CHROMOSOME_V assembly_tag Clone 15946365 15946368 . + . Note "right end: T05G11" CHROMOSOME_V assembly_tag annotation 15953114 15953119 . + . Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[x] Other \nComment Deletion of TAAT in sz18g6\n" CHROMOSOME_V assembly_tag Clone 15953659 15953662 . + . Note "left end: F36G9" CHROMOSOME_V assembly_tag Clone 15953659 15953662 . + . Note "left end: F36G9\n\n" CHROMOSOME_V assembly_tag cosmid 15953659 15953662 . + . Note "vector: CAF:END=Left::lorist6" CHROMOSOME_V assembly_tag Finished 15953659 15953662 . - . Note "Left: F36G9\n" CHROMOSOME_V assembly_tag Finished 15953759 15953762 . + . Note "Right: H24D24" CHROMOSOME_V assembly_tag oligo 15954319 15954341 . + . Note "serial#=F36G9.10\ntemplate=se81c7.s1t \nsequence=CATTTTTGTAGAACCATTACTTC\nflags=\n" CHROMOSOME_V assembly_tag oligo 15966141 15966158 . + . Note "serial#=F36G9.11\ntemplate=se88b10.s1 \nsequence=ATTTTAGATAGGGTCTCC\nflags=\n" CHROMOSOME_V assembly_tag oligo 15966722 15966738 . + . Note "serial#=F36G9.4\ntemplate=se86g8.s1 \nsequence=ACATCAGTGGAACAACC\nflags=\n" CHROMOSOME_V assembly_tag oligo 15966900 15966917 . - . Note "serial#=F36G9.1\ntemplate=se85d9.s1 \nsequence=ATGTCGAGTAGATCATTG\nflags=\n" CHROMOSOME_V assembly_tag comment 15973356 15973366 . + . Note "?" CHROMOSOME_V assembly_tag comment 15975767 15975776 . + . Note "?" CHROMOSOME_V assembly_tag oligo 15978360 15978376 . + . Note "serial#=F36G9.5\ntemplate=se89h11.s1 \nsequence=AATTGGGTGCCTCTTGG\nflags=\n" CHROMOSOME_V assembly_tag oligo 15981763 15981780 . - . Note "serial#=F36G9.6\ntemplate=se87a10.s1 \nsequence=TTTCAGTGTCATTGTTGC\nflags=\n" CHROMOSOME_V assembly_tag oligo 15984225 15984246 . + . Note "serial#=F36G9.13\ntemplate=sf12d10.s1tb \nsequence=GAAAATGCGGAAAATTTCAATG\nflags=\n\n\n" CHROMOSOME_V assembly_tag oligo 15984609 15984631 . + . Note "serial#=F36G9.14\ntemplate=se85f6.s1t \nsequence=CTCACTTGTTTGATTAAAAGAAC\nflags=\n\n" CHROMOSOME_V assembly_tag cosmid 15984821 15984832 . + . Note "vector: " CHROMOSOME_V assembly_tag comment 15989686 15989704 . + . Note "?" CHROMOSOME_V assembly_tag oligo 15990117 15990134 . - . Note "serial#=F36G9.7\ntemplate=se86a1.s1 \nsequence=CGGATGATGATGATAAGC\nflags=\n" CHROMOSOME_V assembly_tag Finished 15991259 15991262 . + . Note "Left: C06C6" CHROMOSOME_V assembly_tag Clone 15991259 15991262 . + . Note "left end: C06C6\n" CHROMOSOME_V assembly_tag Clone 15991259 15991262 . + . Note "left end: C06C6" CHROMOSOME_V assembly_tag Finished 15991359 15991362 . + . Note "Right: F36G9\n\n" CHROMOSOME_V assembly_tag Clone 15996915 15996918 . + . Note "right end: F36G9" CHROMOSOME_V assembly_tag annotation 16010807 16010810 . + . Note "probably TCCT" CHROMOSOME_V assembly_tag Finished 16014512 16014515 . + . Note "Left: T10C6" CHROMOSOME_V assembly_tag Clone 16014512 16014515 . + . Note "left end: T10C6" CHROMOSOME_V assembly_tag Clone 16014512 16014515 . + . Note "left end: T10C6" CHROMOSOME_V assembly_tag Finished 16014612 16014615 . + . Note "Right: C06C6" CHROMOSOME_V assembly_tag Clone 16029742 16029745 . + . Note "right end: C06C6" CHROMOSOME_V assembly_tag Finished 16047859 16047862 . + . Note "Left: ZK285" CHROMOSOME_V assembly_tag Finished 16047959 16047962 . + . Note "Right: T10C6" CHROMOSOME_V assembly_tag Clone 16047959 16047962 . + . Note "right end: T10C6" CHROMOSOME_V assembly_tag Clone 16047959 16047962 . - . Note "right end: T10C6" CHROMOSOME_V assembly_tag Clone 16051640 16051643 . + . Note "left end: F14H3" CHROMOSOME_V assembly_tag Finished 16051640 16051643 . + . Note "Left: F14H3" CHROMOSOME_V assembly_tag Clone 16051640 16051643 . - . Note "left end: F14H3" CHROMOSOME_V assembly_tag Finished 16051740 16051743 . + . Note "Right: ZK285" CHROMOSOME_V assembly_tag annotation 16077251 16077288 . + . Note "single clone over bases 25612 - 25649\nin the inverted repeat across bases\n25411 - 25990" CHROMOSOME_V assembly_tag Clone 16078203 16078206 . + . Note "left end: F22B8" CHROMOSOME_V assembly_tag Finished 16078203 16078206 . + . Note "Left: F22B8" CHROMOSOME_V assembly_tag Clone 16078203 16078206 . + . Note "left end: F22B8" CHROMOSOME_V assembly_tag Finished 16078303 16078306 . + . Note "Right: F14H3" CHROMOSOME_V assembly_tag Clone 16090519 16090522 . + . Note "right end: F14H3" CHROMOSOME_V assembly_tag Clone 16105201 16105204 . + . Note "left end: F44G3" CHROMOSOME_V assembly_tag Clone 16105207 16105210 . + . Note "left end: F44G3" CHROMOSOME_V assembly_tag Finished 16105207 16105210 . + . Note "Left: F44G3" CHROMOSOME_V assembly_tag Finished 16105301 16105304 . + . Note "Right: F22B8" CHROMOSOME_V assembly_tag Clone 16114459 16114462 . + . Note "right end: F22B8" CHROMOSOME_V assembly_tag Finished 16142230 16142233 . + . Note "Left: F10A3" CHROMOSOME_V assembly_tag Clone 16142230 16142233 . + . Note "left end: F10A3" CHROMOSOME_V assembly_tag Finished 16142379 16142382 . + . Note "Right: F44G3" CHROMOSOME_V assembly_tag Clone 16147041 16147044 . - . Note "right end: F44G3" CHROMOSOME_V assembly_tag annotation 16162641 16162641 . + . Note "1 clone says C, 6 clones say T" CHROMOSOME_V assembly_tag Clone 16173790 16173793 . + . Note "left end: K05D4" CHROMOSOME_V assembly_tag Clone 16173790 16173793 . + . Note "left end: K05D4" CHROMOSOME_V assembly_tag Finished 16173790 16173793 . + . Note "Left: K05D4" CHROMOSOME_V assembly_tag Finished 16173890 16173893 . + . Note "Right: F10A3" CHROMOSOME_V assembly_tag Clone 16180431 16180434 . + . Note "right end: F10A3" CHROMOSOME_V assembly_tag Clone 16192686 16192689 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 16192686 16192689 . + . Note "left end: F11A5 Beginning" CHROMOSOME_V assembly_tag Finished 16192686 16192689 . + . Note "Left: F11A5" CHROMOSOME_V assembly_tag Finished 16192786 16192789 . + . Note "Right: K05D4" CHROMOSOME_V assembly_tag annotation 16205572 16205574 . + . Note "edited to the max no. bases\nclome si44e5.s1 has no C but\nclone si34a12.s1 calls a definite C\n" CHROMOSOME_V assembly_tag Clone 16210712 16210715 . + . Note "right end: K05D