##gff-version 2 ##date 2003-02-20 ##sequence-region CHROMOSOME_X 1 17705013 CHROMOSOME_X assembly_tag Finished 2279 2283 . + . Note "Left: CE7X_3" CHROMOSOME_X assembly_tag Clone 2385 2390 . + . Note "right end: CTEL7X (stripped of chimaeric portion)" CHROMOSOME_X assembly_tag Finished 15406 15409 . - . Note "Left: CEXL" CHROMOSOME_X assembly_tag Finished 15502 15506 . - . Note "Right: CE7X_3" CHROMOSOME_X assembly_tag Finished 16654 16659 . + . Note "Left: VY35H6BL" CHROMOSOME_X assembly_tag Finished 16751 16754 . - . Note "Right: CEXL" CHROMOSOME_X assembly_tag Clone 25092 25100 . - . Note "left end: Y35H6" CHROMOSOME_X assembly_tag Finished 25186 25191 . - . Note "Right: VY35H6BL" CHROMOSOME_X assembly_tag annotation 9408604 9408607 . + . Note "end B0272" CHROMOSOME_X assembly_tag comment 9428720 9428733 . + . Note "?repeat left end" CHROMOSOME_X assembly_tag comment 9430289 9430300 . + . Note "repeat right end" CHROMOSOME_X assembly_tag annotation 9431763 9431766 . + . Note "left end of ZK899" CHROMOSOME_X assembly_tag annotation 9437270 9437272 . + . Note "end B0272" CHROMOSOME_X assembly_tag annotation 9468372 9468390 . + . Note "Seems to be 19 C's, but could be 20 " CHROMOSOME_X assembly_tag cosmid 9469305 9469327 . + . Note "vector: ZK899 up to here " CHROMOSOME_X assembly_tag annotation 9472250 9472259 . + . Note "Some reads clearly say 10 A's, some clearly say 9 A's. Edited as 10 A's. " CHROMOSOME_X assembly_tag annotation 9481024 9481027 . + . Note "from here to the next black tag at 15760 seems to be a dodgey region. " CHROMOSOME_X assembly_tag annotation 9481149 9481149 . + . Note "Some say T and some say G" CHROMOSOME_X assembly_tag annotation 9481312 9481313 . + . Note "edited as G, but one read calls A clearly, while others are unsure. End of dodgey region " CHROMOSOME_X assembly_tag annotation 9497272 9497275 . + . Note "left end of C07B5?????" CHROMOSOME_X assembly_tag cosmid 9497412 9497441 . + . Note "vector: C07B5 starts here " CHROMOSOME_X assembly_tag annotation 9504792 9504795 . + . Note "end of T19C11" CHROMOSOME_X assembly_tag annotation 9514811 9514819 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 9515373 9515383 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 9520253 9520283 . + . Note "single stranded with terminators" CHROMOSOME_X assembly_tag annotation 9536743 9536746 . + . Note "left F49E2 lorist6.rev" CHROMOSOME_X assembly_tag annotation 9537533 9537537 . + . Note "pJB8 right C07B5" CHROMOSOME_X assembly_tag annotation 9541740 9541740 . + . Note "G missing" CHROMOSOME_X assembly_tag annotation 9574408 9574411 . + . Note "left C11E4 pJB8rev" CHROMOSOME_X assembly_tag Clone 9574408 9574412 . + . Note "left end: Start of C11E4" CHROMOSOME_X assembly_tag Finished 9574408 9574412 . + . Note "Left: C11E4\n" CHROMOSOME_X assembly_tag Clone 9578558 9578565 . + . Note "right end: F49E2 ends here\n" CHROMOSOME_X assembly_tag annotation 9615107 9615110 . + . Note "left hand end F34H10" CHROMOSOME_X assembly_tag Clone 9615107 9615110 . + . Note "left end: F34H10 onwards\n" CHROMOSOME_X assembly_tag Finished 9615207 9615210 . - . Note "Right: " CHROMOSOME_X assembly_tag Possible_frameshift 9616651 9617411 . + . Note "ribosomal gene is frameshifted, c" CHROMOSOME_X assembly_tag annotation 9617242 9617245 . + . Note "right hand end C11E4" CHROMOSOME_X assembly_tag annotation 9642724 9642727 . + . Note "Left hand end T14B1" CHROMOSOME_X assembly_tag annotation 9642724 9642727 . + . Note "Left end of T14B1" CHROMOSOME_X assembly_tag annotation 9653324 9653327 . + . Note "end of F34H10" CHROMOSOME_X assembly_tag annotation 9664439 9664442 . + . Note "left end of C43C3????" CHROMOSOME_X assembly_tag annotation 9664439 9664442 . + . Note "left C43C3" CHROMOSOME_X assembly_tag annotation 9677354 9677357 . + . Note "right T14B1" CHROMOSOME_X assembly_tag annotation 9694670 9694673 . + . Note "left F15G9" CHROMOSOME_X assembly_tag annotation 9694670 9694673 . + . Note "left F15G9" CHROMOSOME_X assembly_tag annotation 9703501 9703504 . + . Note "right C43C3" CHROMOSOME_X assembly_tag annotation 9719053 9719053 . + . Note "G > A mutation" CHROMOSOME_X assembly_tag annotation 9735914 9735917 . + . Note "left T09B9" CHROMOSOME_X assembly_tag annotation 9735914 9735917 . + . Note "left end of T09B9" CHROMOSOME_X assembly_tag annotation 9738697 9738706 . + . Note "could be 9 A's" CHROMOSOME_X assembly_tag annotation 9739992 9739995 . + . Note "end of F15G9" CHROMOSOME_X assembly_tag annotation 9771156 9771160 . + . CHROMOSOME_X assembly_tag annotation 9771156 9771164 . + . CHROMOSOME_X assembly_tag annotation 9771160 9771164 . + . CHROMOSOME_X assembly_tag annotation 9783055 9783061 . + . CHROMOSOME_X assembly_tag Clone 9793743 9793746 . + . Note "left end: " CHROMOSOME_X assembly_tag annotation 9793743 9793746 . + . Note "Start of F47A4" CHROMOSOME_X assembly_tag annotation 9793748 9793754 . + . Note "END of F47A4 seq {Bev}" CHROMOSOME_X assembly_tag annotation 9805785 9805789 . + . CHROMOSOME_X assembly_tag Clone 9805785 9805789 . + . Note "right end: End of F36G3" CHROMOSOME_X assembly_tag Clone 9831313 9831318 . + . Note "left end: Start of R07B1" CHROMOSOME_X assembly_tag annotation 9831313 9831318 . + . Note "left end of R07B1" CHROMOSOME_X assembly_tag annotation 9835147 9835150 . + . Note "? right end of F47A4" CHROMOSOME_X assembly_tag annotation 9870940 9870968 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 9875422 9875425 . + . Note "left end of F21G4" CHROMOSOME_X assembly_tag Clone 9875422 9875425 . + . Note "left end: Start of F21G4" CHROMOSOME_X assembly_tag Finished 9875422 9875425 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 9877732 9877737 . + . Note "right end: End of R07B1\n" CHROMOSOME_X assembly_tag Clone 9909298 9909301 . + . Note "left end: C17G1" CHROMOSOME_X assembly_tag Finished 9909298 9909301 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 9909298 9909301 . + . Note "left end: Start of C17G1" CHROMOSOME_X assembly_tag Finished 9909395 9909398 . - . Note "Right: " CHROMOSOME_X assembly_tag annotation 9911316 9911354 . + . Note "Single stranding. Gap closed by using phagemids, one being a terminator." CHROMOSOME_X assembly_tag Clone 9918293 9918297 . + . Note "right end: F21G4 " CHROMOSOME_X assembly_tag annotation 9935851 9935854 . + . Note "Point mutation wc22f11.s1 and .t1 read AAAAAA all other reads AAGAA" CHROMOSOME_X assembly_tag annotation 9947182 9947186 . + . Note "start ZC506" CHROMOSOME_X assembly_tag Clone 9947182 9947187 . + . Note "left end: ZC506" CHROMOSOME_X assembly_tag Finished 9947287 9947287 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 9949821 9949826 . + . Note "end of overlap with C17G1" CHROMOSOME_X assembly_tag annotation 9970430 9970433 . + . Note "Left hand end F19C6" CHROMOSOME_X assembly_tag Clone 9970430 9970433 . + . Note "left end: F19C6" CHROMOSOME_X assembly_tag Clone 9980290 9980293 . + . Note "left end: F42G10" CHROMOSOME_X assembly_tag Clone 10006919 10006922 . + . Note "right end: F19C6" CHROMOSOME_X assembly_tag Finished 10019266 10019269 . + . Note "Left: VZC374L" CHROMOSOME_X assembly_tag Clone 10019364 10019367 . - . Note "right end: F42G10" CHROMOSOME_X assembly_tag annotation 10020748 10020757 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag annotation 10021233 10021243 . + . Note "uncertain number of A's, edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag annotation 10022315 10022325 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag repeat 10023909 10023935 . - . Note "Repeats with contig seqF42G10.00003, offset 4676\n" CHROMOSOME_X assembly_tag repeat 10023909 10023943 . - . Note "Repeats with contig seqF42G10.00003, offset 4668\n" CHROMOSOME_X assembly_tag repeat 10023909 10023951 . - . Note "Repeats with contig seqF42G10.00003, offset 4660\n" CHROMOSOME_X assembly_tag repeat 10023909 10023959 . - . Note "Repeats with contig seqF42G10.00003, offset 4652\n" CHROMOSOME_X assembly_tag repeat 10023917 10023967 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag repeat 10023925 10023967 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag repeat 10023933 10023967 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag repeat 10023941 10023967 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag Clone 10024524 10024529 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 10024524 10024529 . + . Note "left end: Start of ZC374" CHROMOSOME_X assembly_tag Clone 10024524 10024529 . + . Note "left end: ZC374" CHROMOSOME_X assembly_tag Finished 10024627 10024630 . - . Note "Right: VZC374L" CHROMOSOME_X assembly_tag annotation 10032929 10033006 . + . Note "Can't double strand terminator confirms sequence Only one clone but cosmid PCR size confirms no chimaera." CHROMOSOME_X assembly_tag annotation 10033033 10033063 . + . Note "Can't double strand Terminator confirms seq Only one clone but cosmid PCR size confirms no chimaera." CHROMOSOME_X assembly_tag Clone 10045018 10045023 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 10045018 10045023 . + . Note "left end: Start of ZC373" CHROMOSOME_X assembly_tag Clone 10045018 10045023 . + . Note "left end: ZC373" CHROMOSOME_X assembly_tag Clone 10045020 10045023 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 10056774 10056779 . + . Note "right end: ZC374" CHROMOSOME_X assembly_tag Clone 10071945 10071948 . + . Note "left end: W07E11" CHROMOSOME_X assembly_tag Clone 10071945 10071949 . + . Note "left end: " CHROMOSOME_X assembly_tag annotation 10071945 10071958 . + . Note "Start of W07E11" CHROMOSOME_X assembly_tag annotation 10079960 10079968 . + . Note "Last read of ZC373" CHROMOSOME_X assembly_tag Clone 10080030 10080035 . + . Note "right end: End of ZC373" CHROMOSOME_X assembly_tag Clone 10086044 10086049 . + . Note "left end: Start of T06H11" CHROMOSOME_X assembly_tag Clone 10086046 10086049 . + . Note "left end: T06H11" CHROMOSOME_X assembly_tag annotation 10092120 10092145 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10104070 10104089 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10106404 10106411 . + . Note "right end: W07E11" CHROMOSOME_X assembly_tag annotation 10107231 10107247 . + . Note "I think this is 17 but it could concievably be 16 or 18 Gs." CHROMOSOME_X assembly_tag annotation 10113539 10113549 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10113704 10113707 . + . Note "left end: F09B9" CHROMOSOME_X assembly_tag annotation 10116399 10116423 . + . Note "18 Gs : may be 19? " CHROMOSOME_X assembly_tag annotation 10121335 10121410 . + . Note "single stranded with terminators" CHROMOSOME_X assembly_tag annotation 10121949 10121978 . + . Note "single stranded with terminators" CHROMOSOME_X assembly_tag Clone 10127464 10127467 . + . Note "right end: T06H11" CHROMOSOME_X assembly_tag Clone 10127464 10127467 . + . Note "right end: T06H11" CHROMOSOME_X assembly_tag Finished 10151425 10151428 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10151527 10151527 . + . Note "right end: F09B9" CHROMOSOME_X assembly_tag Clone 10151527 10151530 . - . Note "right end: F09B9" CHROMOSOME_X assembly_tag Finished 10168203 10168206 . + . Note "Left: F21A10" CHROMOSOME_X assembly_tag Finished 10168299 10168302 . - . Note "Right: " CHROMOSOME_X assembly_tag Clone 10168299 10168302 . - . Note "right end: C07A4" CHROMOSOME_X assembly_tag Clone 10168299 10168302 . - . Note "right end: C07A4" CHROMOSOME_X assembly_tag Clone 10181098 10181101 . + . Note "left end: F44A6" CHROMOSOME_X assembly_tag Clone 10181098 10181101 . + . Note "left end: left F44A6 lorist6.rev" CHROMOSOME_X assembly_tag Finished 10181194 10181197 . - . Note "Right: F21A10" CHROMOSOME_X assembly_tag annotation 10206038 10206252 . + . Note "single strand, terminator" CHROMOSOME_X assembly_tag annotation 10206606 10206653 . + . CHROMOSOME_X assembly_tag annotation 10207144 10207266 . + . CHROMOSOME_X assembly_tag annotation 10207366 10207476 . + . Note "single strand, terminator" CHROMOSOME_X assembly_tag Clone 10208978 10208981 . + . Note "left end: left C14H10 pJB8.rev" CHROMOSOME_X assembly_tag Clone 10208978 10208981 . + . Note "left end: LHE of C14H10" CHROMOSOME_X assembly_tag annotation 10215799 10215808 . + . Note "Number of A's Gone with highest number(10)" CHROMOSOME_X assembly_tag Clone 10219056 10219059 . + . Note "right end: RHE of F44A6" CHROMOSOME_X assembly_tag annotation 10221348 10221424 . + . Note "Single stranded but terminator wd56f1 confirming seq" CHROMOSOME_X assembly_tag annotation 10221425 10221502 . + . Note "Single stranded but confirmed by terminator wd56f1 and wd59c4" CHROMOSOME_X assembly_tag annotation 10221503 10221575 . + . Note "Single stranded but seq confirmed by terminator wd59c4 and wd56f1" CHROMOSOME_X assembly_tag annotation 10234829 10234870 . + . Note "Single stranded but terminators wd56h6 and wd50e12 confirm seq." CHROMOSOME_X assembly_tag Finished 10235662 10235665 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10235662 10235665 . + . Note "left end: LHE of C32A9" CHROMOSOME_X assembly_tag Clone 10235662 10235665 . + . Note "left end: C32A9" CHROMOSOME_X assembly_tag Clone 10246791 10246794 . + . Note "right end: C14H10" CHROMOSOME_X assembly_tag Clone 10266741 10266744 . + . Note "left end: F41E7" CHROMOSOME_X assembly_tag Clone 10266741 10266744 . + . Note "left end: Left Hand End of F41E7" CHROMOSOME_X assembly_tag Finished 10266741 10266744 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 10266841 10266847 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 10271109 10271111 . + . Note "This could be TTT not TAT. Unable to get a clear read through this area." CHROMOSOME_X assembly_tag Clone 10283133 10283136 . + . Note "right end: Right Hand End of C32A9" CHROMOSOME_X assembly_tag Clone 10303313 10303318 . + . Note "left end: ?Start of R07E3 Found by searching for the first read of R07E3 found in F41E7 in read only in R07E3 database" CHROMOSOME_X assembly_tag Clone 10303313 10303318 . + . Note "left end: left end 0f R07E3" CHROMOSOME_X assembly_tag Finished 10303421 10303427 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10306275 10306278 . + . Note "right end: F41E7" CHROMOSOME_X assembly_tag Finished 10342945 10342948 . + . Note "Left: Y49A10A" CHROMOSOME_X assembly_tag Clone 10343043 10343048 . + . Note "right end: <" CHROMOSOME_X assembly_tag Clone 10343043 10343048 . - . Note "right end: R07E3" CHROMOSOME_X assembly_tag annotation 10352028 10359674 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[X] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 7.9Kb of a TTTGGTGAAGCCAGGAGTAAAAAA motif assembled in with several base differences,2 forced joins and 2 single clone regions.The other motifs areTATGGTGAAGCCAGAGAGTAAAATATTGGGTGAAGCCAGAGAGTAAAATATTGGGTGAAGCCTAAGAGTAAAAAATATGGTGAAGCCAGAGAGTAAAAAATATGGTGAAGCCAGAGAGTACAATATTTGGTGAAGCCATAGAGTAAAATATATGGTGAAGCCAGAGAGTCAAATATACGGTGAAGCCAGAGAGTAAAATATTGAGTGAAGCCAGAGAGTCAAATA" CHROMOSOME_X assembly_tag annotation 10359690 10360837 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 1.1Kb of TTATGGAGCGG motif assembled in with some base differences and 1 forced join." CHROMOSOME_X assembly_tag Clone 10366884 10366887 . + . Note "left end: F46F6" CHROMOSOME_X assembly_tag Clone 10366884 10366889 . + . Note "left end: start of F46F6" CHROMOSOME_X assembly_tag Finished 10366991 10366994 . - . Note "Right: Y49A10A" CHROMOSOME_X assembly_tag Clone 10392333 10392338 . + . Note "left end: start of ZC504" CHROMOSOME_X assembly_tag Clone 10392333 10392338 . + . Note "left end: ZC504" CHROMOSOME_X assembly_tag Clone 10410859 10410862 . + . Note "right end: F46F6" CHROMOSOME_X assembly_tag annotation 10423838 10423855 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10426187 10426224 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10426666 10426701 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10429979 10429982 . + . Note "left end: C39B10" CHROMOSOME_X assembly_tag Clone 10429979 10429982 . + . Note "left end: LHE of C39B10" CHROMOSOME_X assembly_tag Clone 10430896 10430901 . + . Note "right end: RHE of ZC504" CHROMOSOME_X assembly_tag annotation 10446135 10446145 . + . Note "Single stranded but has a terminator to confirm we14d12" CHROMOSOME_X assembly_tag annotation 10465754 10465776 . + . Note "Single stranded but terminator we13c9 confirms seq" CHROMOSOME_X assembly_tag Clone 10467874 10467877 . + . Note "left end: LHE of C33D3" CHROMOSOME_X assembly_tag Clone 10467874 10467877 . + . Note "left end: left C33D3 pJB8 forward" CHROMOSOME_X assembly_tag Clone 10473395 10473398 . + . Note "right end: right C39B10 pJB8.rev" CHROMOSOME_X assembly_tag annotation 10484708 10484717 . + . Note "11 A's in this clone" CHROMOSOME_X assembly_tag Clone 10485771 10485774 . + . Note "left end: ?F14F3" CHROMOSOME_X assembly_tag Clone 10485771 10485774 . + . Note "left end: left F14F3 lorist forward" CHROMOSOME_X assembly_tag Clone 10506393 10506396 . + . Note "right end: C33D3" CHROMOSOME_X assembly_tag annotation 10520182 10520185 . + . Note "run terminator" CHROMOSOME_X assembly_tag Clone 10520684 10520687 . + . Note "left end: F59F5" CHROMOSOME_X assembly_tag Clone 10520684 10520687 . + . Note "left end: LEFT HAND END of F59F5" CHROMOSOME_X assembly_tag Finished 10520684 10520687 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10524383 10524386 . + . Note "right end: RIGHT HAND END of F14F3" CHROMOSOME_X assembly_tag Clone 10555298 10555301 . + . Note "left end: LEFT HAND END of F57C7" CHROMOSOME_X assembly_tag Clone 10555298 10555301 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 10555298 10555301 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 10555399 10555403 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10560031 10560034 . + . Note "right end: RHE of F59F5" CHROMOSOME_X assembly_tag annotation 10561781 10561855 . + . Note "69 copies of TC shown. Restriction digest and PCR fragment agree, could be another 10 bases or so in the middle." CHROMOSOME_X assembly_tag annotation 10561856 10561923 . + . Note "69 copies of TC shown Restriction digest and PCR fragment agree could be another 10 bases or so in the middle" CHROMOSOME_X assembly_tag annotation 10562023 10562035 . + . Note "?2nd black tag" CHROMOSOME_X assembly_tag annotation 10575799 10575804 . + . Note "Point mutation on both wh89c5.s1 and wh89c5.s1t" CHROMOSOME_X assembly_tag Clone 10585341 10585344 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 10585341 10585344 . + . Note "left end: LHE M79" CHROMOSOME_X assembly_tag Finished 10585341 10585344 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 10585441 10585445 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10595793 10595796 . + . Note "right end: End of F57C7" CHROMOSOME_X assembly_tag Clone 10595793 10595796 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 10618995 10618998 . + . Note "left end: Start of F11A1" CHROMOSOME_X assembly_tag Clone 10618995 10618998 . + . Note "left end: F11A1" CHROMOSOME_X assembly_tag Finished 10619095 10619098 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10624938 10624941 . + . Note "right end: M79" CHROMOSOME_X assembly_tag Finished 10658248 10658251 . + . Note "Left: VF13E6l" CHROMOSOME_X assembly_tag Clone 10658347 10658347 . + . Note "right end: F11A1" CHROMOSOME_X assembly_tag Clone 10658347 10658350 . - . Note "right end: right hand end F11A1" CHROMOSOME_X assembly_tag annotation 10659466 10659475 . + . Note "uncertain number of T's. Edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag Clone 10660940 10660943 . + . Note "left end: F13E6" CHROMOSOME_X assembly_tag Clone 10660940 10660943 . + . Note "left end: Start of F13E6" CHROMOSOME_X assembly_tag annotation 10660944 10661023 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Finished 10661041 10661044 . - . Note "Right: VF13E6l" CHROMOSOME_X assembly_tag annotation 10666872 10666895 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10676698 10676701 . + . Note "left end: Start of C46B5" CHROMOSOME_X assembly_tag annotation 10683273 10683317 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10684939 10685093 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10697712 10697724 . + . Note "13a's on -ve strand 12a's on +ve strand Gone with highest number" CHROMOSOME_X assembly_tag annotation 10699320 10699365 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Finished 10700159 10700168 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10700259 10700259 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 10701654 10701657 . + . Note "left end: T01C1" CHROMOSOME_X assembly_tag Clone 10701654 10701657 . + . Note "left end: START of T01C1" CHROMOSOME_X assembly_tag Finished 10701754 10701763 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10721118 10721121 . + . Note "right end: END of C46B5" CHROMOSOME_X assembly_tag Clone 10729155 10729160 . + . Note "left end: START of R07A4 therefore no YAC bridge" CHROMOSOME_X assembly_tag annotation 10729155 10729160 . + . Note "This is the start of R07A4 it has been impossible to finish this cosmid due to the large repeat section in the middle and due to the nature of the repeat i.e. one base difference in some repeats. Also there is evidence from the restriction digest that some deletion is occuring during growth." CHROMOSOME_X assembly_tag Clone 10729155 10729160 . + . Note "left end: This is the clone left end of R07A4 This is the start of R07A4 it has been impossible to finish this cosmid due to the large repeat section in the middle and due to the nature of the repeat i.e. one base difference in some repeats. Also there is evidence from the restriction digest that some deletion is occuring during growth" CHROMOSOME_X assembly_tag Clone 10738781 10738784 . + . Note "right end: this is the clone right end of T01C1 " CHROMOSOME_X assembly_tag annotation 10739945 10739948 . + . Note "Start of first complete repeat segment preceded by defective partial repeats. Repeats of 214 and 149 type." CHROMOSOME_X assembly_tag annotation 10740819 10740822 . + . Note "Break contig at TCCC and insert 20 copies of 214 base repeat ( possibly one 149 also ) 214 repeat consensus : TCCCAGTAGGTGCCAGAAGCTCCGAGCAGTTACAGAAAACCTACAGTACCTTTGTGCGTATTTTATTATTAAATGAAAACGACCATTTATAGGCAAAATAGGTAAATTTATGAAACTTTGAAAATTCCCAAATCACTTCAAACCAACTTTTTTTGAAATTTCTTTCAGAAACTTTGTTGCAAATTCCAAGCTTTTTCAGAATTTACCAACAACA Consensus of 149 repeat : TCCCAGTAGGTGCCAGAAGCTCCGAGCAGTTACAGAAAACCTACAGTACCTTTGTGCGTATTTTATTATTAAATGAAAACGACCATTCATAGGCATCTTTCAGAAACTTTGTTGCAAATTCCAAGCTTTTTCAGAATTTACCAACAACA " CHROMOSOME_X assembly_tag annotation 10741396 10741399 . + . Note "Return to main contig here ( One more 214 repeat , also an incomplete repeat and then unique )" CHROMOSOME_X assembly_tag annotation 10741738 10741747 . + . Note "last bases of repeat" CHROMOSOME_X assembly_tag Finished 10758066 10758069 . + . Note "Left: T05A10" CHROMOSOME_X assembly_tag Clone 10758066 10758069 . + . Note "left end: T05A10 left lorist fwd" CHROMOSOME_X assembly_tag Clone 10765860 10765865 . + . Note "left end: This is the clone left end of R07A4 ." CHROMOSOME_X assembly_tag Clone 10787008 10787011 . + . Note "left end: F31B12" CHROMOSOME_X assembly_tag Clone 10787008 10787011 . + . Note "left end: left F31B12 lorist fwd" CHROMOSOME_X assembly_tag Finished 10787109 10787112 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10795104 10795107 . + . Note "right end: T05A10" CHROMOSOME_X assembly_tag annotation 10795108 10795116 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10801478 10801519 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10804949 10804988 . + . Note "single stranded with terminatoe" CHROMOSOME_X assembly_tag annotation 10806795 10806819 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10809063 10809106 . + . Note "run terminator!" CHROMOSOME_X assembly_tag annotation 10811602 10811605 . + . CHROMOSOME_X assembly_tag annotation 10811621 10811652 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10812496 10812544 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Finished 10816478 10816481 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10816478 10816481 . + . Note "left end: C05A9" CHROMOSOME_X assembly_tag Clone 10816478 10816481 . + . Note "left end: C05A9" CHROMOSOME_X assembly_tag Clone 10831328 10831331 . + . Note "right end: F31B12" CHROMOSOME_X assembly_tag annotation 10832265 10832282 . + . Note "?single stranded and only one clone." CHROMOSOME_X assembly_tag annotation 10832288 10832288 . + . Note "phagemid reads 1 G, m13 reads 2." CHROMOSOME_X assembly_tag annotation 10845771 10845774 . + . Note "As and C corrected from AAATCC" CHROMOSOME_X assembly_tag Clone 10850686 10850689 . + . Note "left end: T21E8" CHROMOSOME_X assembly_tag Clone 10850686 10850689 . + . Note "left end: ? T21E8" CHROMOSOME_X assembly_tag Finished 10850686 10850689 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 10850782 10850786 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10860377 10860379 . + . Note "right end: C05A9" CHROMOSOME_X assembly_tag Clone 10878335 10878338 . + . Note "left end: F47B10" CHROMOSOME_X assembly_tag Finished 10878335 10878338 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10878335 10878338 . + . Note "left end: F47B10" CHROMOSOME_X assembly_tag Finished 10878446 10878449 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10882738 10882741 . + . Note "right end: T21E8" CHROMOSOME_X assembly_tag Clone 10909192 10909195 . + . Note "left end: T21B6" CHROMOSOME_X assembly_tag Clone 10909192 10909195 . + . Note "left end: Clone left end of T21B6" CHROMOSOME_X assembly_tag Finished 10909292 10909295 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10916386 10916389 . + . Note "right end: Clone right end of F47B10" CHROMOSOME_X assembly_tag Clone 10939807 10939810 . + . Note "left end: Clone left end of K09C8" CHROMOSOME_X assembly_tag Clone 10939807 10939810 . + . Note "left end: K09C8" CHROMOSOME_X assembly_tag Clone 10945406 10945409 . + . Note "right end: T21B6" CHROMOSOME_X assembly_tag annotation 10945410 10945415 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10965192 10965209 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10967203 10967206 . + . Note "left end: F59F3" CHROMOSOME_X assembly_tag Clone 10967203 10967206 . + . Note "left end: F59F3" CHROMOSOME_X assembly_tag Clone 10974769 10974772 . + . Note "right end: K09C8" CHROMOSOME_X assembly_tag annotation 10990357 10990364 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10996633 10996636 . + . Note "left end: F58A3" CHROMOSOME_X assembly_tag Clone 10996633 10996636 . + . Note "left end: Left Hand End F58A3" CHROMOSOME_X assembly_tag Finished 10996633 10996636 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11008449 11008452 . - . Note "right end: Right Hand End F59F3" CHROMOSOME_X assembly_tag annotation 11025092 11025119 . + . Note ""up to 28 G's"" CHROMOSOME_X assembly_tag Clone 11032314 11032317 . + . Note "left end: Left Hand End C09F12" CHROMOSOME_X assembly_tag Clone 11032314 11032317 . + . Note "left end: C09F12" CHROMOSOME_X assembly_tag Finished 11032314 11032317 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 11032430 11032434 . - . Note "Right: " CHROMOSOME_X assembly_tag Clone 11039095 11039098 . + . Note "right end: F58A3" CHROMOSOME_X assembly_tag oligo 11041547 11041575 . + . Note "C09F12 36.8 CAA TGA CTA GAG CTA CAT TTT TTG AAA AC 36.8 for klentaq" CHROMOSOME_X assembly_tag Clone 11049119 11049126 . + . Note "left end: W04G3" CHROMOSOME_X assembly_tag Clone 11049119 11049126 . + . Note "left end: START of W04G3" CHROMOSOME_X assembly_tag Finished 11049220 11049232 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11073661 11073664 . + . Note "right end: END of C09F12" CHROMOSOME_X assembly_tag Clone 11081176 11081179 . + . Note "left end: Start of W02H3 (no cosmid vector as W02H3 is chimeric at the start)" CHROMOSOME_X assembly_tag Clone 11081176 11081179 . + . Note "left end: This is the clone left end of W02H3 , at this point W02H3 and W04G3 diverged as W02H3 was chimaeric." CHROMOSOME_X assembly_tag Clone 11087550 11087553 . + . Note "right end: This is the clone right end of W04G3." CHROMOSOME_X assembly_tag Finished 11098791 11098796 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11098791 11098796 . + . Note "left end: Clone right end of R08B4 . " CHROMOSOME_X assembly_tag Clone 11098791 11098796 . + . Note "left end: This is the clone left end of R08B4." CHROMOSOME_X assembly_tag Clone 11105070 11105073 . + . Note "right end: RHE of W02H3" CHROMOSOME_X assembly_tag Clone 11105071 11105073 . + . Note "right end: ?RHE of W02H3" CHROMOSOME_X assembly_tag Clone 11105073 11105073 . + . Note "left end: Amanda's Lhe W02H3" CHROMOSOME_X assembly_tag annotation 11117194 11117211 . + . Note "18 G's s1 read and terminator agree" CHROMOSOME_X assembly_tag Finished 11124176 11124179 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11124176 11124179 . + . Note "left end: C05C9" CHROMOSOME_X assembly_tag Clone 11124176 11124179 . + . Note "left end: LHE of C05C9" CHROMOSOME_X assembly_tag Finished 11124281 11124285 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11139253 11139258 . + . Note "right end: R08B4" CHROMOSOME_X assembly_tag Clone 11157906 11157909 . + . Note "left end: F13D2" CHROMOSOME_X assembly_tag Clone 11157906 11157909 . + . Note "left end: Start of F13D2" CHROMOSOME_X assembly_tag Finished 11157906 11157909 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11165669 11165672 . + . Note "right end: End of C05C9" CHROMOSOME_X assembly_tag Finished 11180100 11180103 . + . Note "Left: C34F6" CHROMOSOME_X assembly_tag Clone 11180100 11180103 . + . Note "left end: Start of C34F6\n" CHROMOSOME_X assembly_tag Clone 11180100 11180104 . + . Note "left end: Start of C34F6" CHROMOSOME_X assembly_tag Clone 11195339 11195342 . - . Note "right end: End of F13D2\n" CHROMOSOME_X assembly_tag Finished 11224465 11224469 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11224465 11224469 . + . Note "left end: C03A3" CHROMOSOME_X assembly_tag Finished 11224465 11224468 . - . Note "Right: C34F6" CHROMOSOME_X assembly_tag Clone 11224465 11224468 . - . Note "right end: C34F6" CHROMOSOME_X assembly_tag Clone 11264637 11264640 . + . Note "left end: F38B2" CHROMOSOME_X assembly_tag Clone 11264637 11264640 . + . Note "left end: F38B2" CHROMOSOME_X assembly_tag Finished 11264745 11264749 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11265678 11265681 . + . Note "right end: C03A3" CHROMOSOME_X assembly_tag annotation 11272805 11272811 . + . CHROMOSOME_X assembly_tag annotation 11274245 11274304 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11275130 11275165 . + . Note "single stramded with terminator" CHROMOSOME_X assembly_tag annotation 11276755 11276776 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11279120 11279324 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11279325 11279385 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11279386 11279449 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11281726 11281841 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11281842 11281966 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11281967 11282021 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11282933 11282969 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11282969 11283030 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11283502 11283614 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 11284388 11284391 . + . Note "left end: Clone left end of F08G12" CHROMOSOME_X assembly_tag Finished 11284388 11284391 . + . Note "Left: F08G12" CHROMOSOME_X assembly_tag Clone 11284388 11284391 . + . Note "left end: F08G12" CHROMOSOME_X assembly_tag Clone 11300912 11300915 . + . Note "right end: Clone right end of F38B2" CHROMOSOME_X assembly_tag Clone 11300912 11300915 . + . Note "right end: Clone right end of F38B2 " CHROMOSOME_X assembly_tag annotation 11305127 11305131 . + . Note "Unclear" CHROMOSOME_X assembly_tag annotation 11305177 11305181 . + . Note "Unclear" CHROMOSOME_X assembly_tag Clone 11310448 11310451 . + . Note "left end: Clone left end of ZK455" CHROMOSOME_X assembly_tag Finished 11310448 11310451 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11310448 11310451 . + . Note "left end: LHE of ZK455" CHROMOSOME_X assembly_tag Finished 11310550 11310555 . + . Note "Right: F08G12" CHROMOSOME_X assembly_tag Clone 11318404 11318408 . + . Note "right end: F08G12 RHE" CHROMOSOME_X assembly_tag Clone 11344245 11344248 . + . Note "left end: Start of F42E11" CHROMOSOME_X assembly_tag Finished 11344245 11344248 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11344245 11344248 . + . Note "left end: LHE of F42E11" CHROMOSOME_X assembly_tag Finished 11344345 11344351 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11345457 11345460 . + . Note "right end: end of ZK455" CHROMOSOME_X assembly_tag Clone 11374509 11374512 . + . Note "left end: F08B12" CHROMOSOME_X assembly_tag Finished 11374509 11374512 . + . Note "Left: F08B12" CHROMOSOME_X assembly_tag Clone 11374509 11374512 . + . Note "left end: start of F08B12" CHROMOSOME_X assembly_tag Finished 11374621 11374626 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11378163 11378166 . + . Note "right end: F42E11" CHROMOSOME_X assembly_tag Clone 11401524 11401527 . + . Note "left end: F46C3" CHROMOSOME_X assembly_tag Clone 11401524 11401527 . + . Note "left end: Clone left end of F46C3" CHROMOSOME_X assembly_tag Finished 11401524 11401533 . + . Note "Left: F46C3" CHROMOSOME_X assembly_tag Finished 11401624 11401627 . + . Note "Right: F08B12" CHROMOSOME_X assembly_tag Clone 11413082 11413085 . + . Note "right end: Clone right end of F08B12" CHROMOSOME_X assembly_tag annotation 11421043 11421049 . + . Note "Possible point mutation cc or ccc" CHROMOSOME_X assembly_tag annotation 11421045 11421047 . + . Note "Possible point mutation cc or ccc" CHROMOSOME_X assembly_tag Clone 11431241 11431244 . + . Note "left end: Clone left end of F48C5" CHROMOSOME_X assembly_tag Clone 11431241 11431244 . + . Note "left end: F48C5" CHROMOSOME_X assembly_tag Finished 11431241 11431244 . + . Note "Left: F48C5" CHROMOSOME_X assembly_tag Finished 11431292 11431300 . + . Note "Right: F46C3" CHROMOSOME_X assembly_tag annotation 11431558 11431570 . + . CHROMOSOME_X assembly_tag annotation 11431558 11434284 . + . Note "Tandemly repetitive sequences.Restriction data from cosmid DNA suggests approximately 5kb are missing from this region.The HaeIII restriction fragment size from cosmid DNA corresponding to this region is approximately 7900 bp.Because of the repetitive nature of this sequence, base accuracy cannot be guaranteed in this region. The size of this region has not been predicted using non-clonedgenomic DNA. " CHROMOSOME_X assembly_tag annotation 11431558 11434284 . + . Note "Multiple copies of a 25-26mer which are variations of CCGTAATGCCTAACTTTAGAATCTG" CHROMOSOME_X assembly_tag annotation 11431558 11431570 . - . CHROMOSOME_X assembly_tag annotation 11433305 11434301 . + . Note "Multiple copies of a 25-26mer which are variations of \n\nCATTGCGGCGGATTTTAGAAAAATG\n" CHROMOSOME_X assembly_tag Clone 11440596 11440599 . - . Note "right end: F46C3" CHROMOSOME_X assembly_tag Clone 11450859 11450862 . + . Note "left end: T25C12" CHROMOSOME_X assembly_tag Finished 11450859 11450862 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11450859 11450862 . + . Note "left end: T25C12" CHROMOSOME_X assembly_tag Finished 11450959 11450963 . - . Note "Right: F48C5" CHROMOSOME_X assembly_tag Clone 11464754 11464757 . + . Note "right end: F48C5" CHROMOSOME_X assembly_tag annotation 11472998 11473005 . + . CHROMOSOME_X assembly_tag Finished 11483795 11483799 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 11483900 11483903 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11483900 11483903 . + . Note "right end: T25C12" CHROMOSOME_X assembly_tag Clone 11483900 11483903 . - . Note "right end: T25C12 RHE" CHROMOSOME_X assembly_tag Finished 11488127 11488130 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11488127 11488130 . + . Note "left end: F29G6 LHE" CHROMOSOME_X assembly_tag Clone 11488127 11488130 . + . Note "left end: F29G6" CHROMOSOME_X assembly_tag Finished 11488229 11488232 . - . Note "Right: " CHROMOSOME_X assembly_tag Finished 11518967 11518970 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11518967 11518970 . + . Note "left end: C35C5" CHROMOSOME_X assembly_tag Finished 11519071 11519075 . + . Note "Right: " CHROMOSOME_X assembly_tag comment 11545636 11545636 . + . Note "?Do term poss retracking" CHROMOSOME_X assembly_tag Finished 11562940 11562943 . + . Note "Left: H05G16" CHROMOSOME_X assembly_tag Finished 11563051 11563054 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11563051 11563054 . + . Note "right end: C35C5" CHROMOSOME_X assembly_tag Clone 11573476 11573479 . + . Note "left end: F52D10\n" CHROMOSOME_X assembly_tag Finished 11573476 11573479 . + . Note "Left: " CHROMOSOME_X assembly_tag oligo 11573567 11573589 . + . Note "serial#=F52D10.10 template=wk31f3.s1 sequence=m13fGGTCTGCAAAAAATTATTGTTAC flags=" CHROMOSOME_X assembly_tag Finished 11573583 11573586 . - . Note "Right: H05G16" CHROMOSOME_X assembly_tag oligo 11576629 11576649 . + . Note "serial#=F52D10.6 template=wk11c3.s1 sequence=GGCAGCAATAAAAGTTAAAAC flags=" CHROMOSOME_X assembly_tag resolved 11576677 11576684 . + . Note "compression: " CHROMOSOME_X assembly_tag resolved 11576764 11576769 . + . Note "compression: " CHROMOSOME_X assembly_tag comment 11577299 11577308 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag oligo 11577314 11577332 . + . Note "serial#=F52D10.5 template=wk13g2.s1 sequence=GCAAGCACTACAATTTTTC flags=" CHROMOSOME_X assembly_tag comment 11577398 11577466 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag comment 11577964 11578002 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11578833 11578836 . + . CHROMOSOME_X assembly_tag compression 11578846 11578853 . + . CHROMOSOME_X assembly_tag comment 11579100 11579126 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11579321 11579357 . + . Note "?single stranded" CHROMOSOME_X assembly_tag unknown 11579372 11579374 . + . CHROMOSOME_X assembly_tag unknown 11579388 11579389 . + . CHROMOSOME_X assembly_tag ambiguous 11579420 11579420 . + . CHROMOSOME_X assembly_tag comment 11579686 11579749 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11579750 11579837 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11579838 11579885 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11579886 11580203 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11579997 11580003 . + . CHROMOSOME_X assembly_tag comment 11580204 11580361 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11580362 11580401 . + . Note "?" CHROMOSOME_X assembly_tag ambiguous 11580364 11580366 . + . CHROMOSOME_X assembly_tag comment 11580436 11580618 . + . Note "?" CHROMOSOME_X assembly_tag oligo 11580477 11580494 . + . Note "serial#=F52D10.1 sequence=TAAATGTTCGCTAGACAC flags=" CHROMOSOME_X assembly_tag comment 11580619 11580781 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11581135 11581164 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11581340 11581347 . + . Note "?diverges" CHROMOSOME_X assembly_tag resolved 11581524 11581528 . + . Note "compression: " CHROMOSOME_X assembly_tag comment 11584942 11585173 . + . Note "?single stranded" CHROMOSOME_X assembly_tag oligo 11585222 11585242 . + . Note "serial#=F52D10.2 template=wk28d9.s1 sequence=CTGCAATGTATTGTAAATTGG flags=" CHROMOSOME_X assembly_tag compression 11585243 11585251 . + . CHROMOSOME_X assembly_tag compression 11586234 11586240 . + . CHROMOSOME_X assembly_tag compression 11586561 11586563 . + . CHROMOSOME_X assembly_tag unknown 11586691 11586694 . + . CHROMOSOME_X assembly_tag compression 11587351 11587355 . + . CHROMOSOME_X assembly_tag comment 11587448 11587459 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11588123 11588131 . + . CHROMOSOME_X assembly_tag compression 11588326 11588335 . + . CHROMOSOME_X assembly_tag compression 11588339 11588350 . + . CHROMOSOME_X assembly_tag compression 11588505 11588514 . + . CHROMOSOME_X assembly_tag compression 11588513 11588527 . + . CHROMOSOME_X assembly_tag compression 11588565 11588572 . + . CHROMOSOME_X assembly_tag comment 11588837 11588849 . + . Note "?single stranded" CHROMOSOME_X assembly_tag oligo 11589494 11589511 . + . Note "serial#=F52D10.3 template=wk31c1.s1 sequence=TTTCAAGTCTCTGAACAC flags=" CHROMOSOME_X assembly_tag repeat 11589528 11589546 . + . Note "Repeats with contig wk31d4.s1, offset 16058" CHROMOSOME_X assembly_tag repeat 11589528 11589548 . + . Note "Repeats with contig wk31d4.s1, offset 16056" CHROMOSOME_X assembly_tag repeat 11589530 11589550 . + . Note "Repeats with contig wk31d4.s1, offset 16054" CHROMOSOME_X assembly_tag repeat 11589532 11589550 . + . Note "Repeats with contig wk31d4.s1, offset 16054" CHROMOSOME_X assembly_tag unknown 11589552 11589555 . + . CHROMOSOME_X assembly_tag comment 11589569 11589689 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11589995 11589997 . + . CHROMOSOME_X assembly_tag oligo 11590323 11590339 . + . Note "serial#=F52D10.4 template=wk27d3.s1 sequence=GTAAGCTGCTAGTGAAC flags=" CHROMOSOME_X assembly_tag compression 11590786 11590790 . + . CHROMOSOME_X assembly_tag oligo 11590909 11590926 . + . Note "serial#=F52D10.14 template=wk13g11.s1 sequence=CTTTCAATAGGTCGAAGG flags=" CHROMOSOME_X assembly_tag ambiguous 11591025 11591030 . + . CHROMOSOME_X assembly_tag compression 11591091 11591093 . + . CHROMOSOME_X assembly_tag oligo 11591131 11591147 . + . Note "serial#=F52D10.12 template=wk31h4.s1 sequence=TGCACACTGTCTTCTTG flags=" CHROMOSOME_X assembly_tag compression 11593754 11593764 . + . CHROMOSOME_X assembly_tag compression 11593764 11593773 . + . CHROMOSOME_X assembly_tag compression 11594696 11594700 . + . CHROMOSOME_X assembly_tag compression 11594919 11594925 . + . CHROMOSOME_X assembly_tag compression 11594985 11594991 . + . CHROMOSOME_X assembly_tag oligo 11595062 11595078 . + . Note "serial#=F52D10 template=wk27b4.s1 sequence=GGTGAGTTGGTTGCATC flags=" CHROMOSOME_X assembly_tag comment 11595211 11595360 . + . Note "?single stranded" CHROMOSOME_X assembly_tag oligo 11595234 11595256 . + . Note "serial#=F52D10.16 template=wk31b5.s1 sequence=GCGTAGTTTTTGAAAATAAACTC flags=" CHROMOSOME_X assembly_tag oligo 11595261 11595277 . + . Note "serial#=F52D10.7 template=wk32h5.s1 sequence=ATGTGGAATTGGGTCGC flags=" CHROMOSOME_X assembly_tag stop 11595349 11595352 . + . CHROMOSOME_X assembly_tag comment 11595361 11595376 . + . Note "?single stranded" CHROMOSOME_X assembly_tag unknown 11595421 11595422 . + . CHROMOSOME_X assembly_tag ambiguous 11595616 11595620 . + . CHROMOSOME_X assembly_tag compression 11595730 11595735 . + . CHROMOSOME_X assembly_tag compression 11595844 11595859 . + . CHROMOSOME_X assembly_tag compression 11596228 11596232 . + . CHROMOSOME_X assembly_tag comment 11596342 11596476 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11596919 11596925 . + . CHROMOSOME_X assembly_tag compression 11597007 11597017 . + . CHROMOSOME_X assembly_tag compression 11597115 11597121 . + . CHROMOSOME_X assembly_tag comment 11597126 11597203 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11598358 11598368 . + . Note "?single stranded " CHROMOSOME_X assembly_tag compression 11598773 11598779 . + . CHROMOSOME_X assembly_tag compression 11598782 11598791 . + . CHROMOSOME_X assembly_tag compression 11598922 11598926 . + . CHROMOSOME_X assembly_tag comment 11599295 11599411 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11599412 11599512 . + . Note "?single stranded" CHROMOSOME_X assembly_tag unknown 11599551 11599555 . + . Note "repeat!!??????" CHROMOSOME_X assembly_tag ambiguous 11599553 11599553 . + . Note "mutation???????" CHROMOSOME_X assembly_tag compression 11601343 11601347 . + . CHROMOSOME_X assembly_tag compression 11601349 11601362 . + . Note "?" CHROMOSOME_X assembly_tag compression 11601361 11601371 . + . CHROMOSOME_X assembly_tag compression 11601428 11601437 . + . CHROMOSOME_X assembly_tag oligo 11601935 11601951 . + . Note "serial#=F52D10.15 template=wk11a6.s1 sequence=TGTGCCCATTTTGAGTC flags=" CHROMOSOME_X assembly_tag oligo 11602156 11602172 . + . Note "serial#=F52D10.17 template=wk28d8.s1 sequence=CGATGATGGGAGAGTTC flags=" CHROMOSOME_X assembly_tag comment 11603030 11603143 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11603241 11603268 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag comment 11603269 11603368 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag ambiguous 11604004 11604013 . + . CHROMOSOME_X assembly_tag repeat 11604184 11604207 . + . Note "Repeats with contig wk28d8.s2t, offset 53" CHROMOSOME_X assembly_tag comment 11604228 11604262 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11604263 11604347 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11604517 11604520 . + . CHROMOSOME_X assembly_tag resolved 11604737 11604746 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 11605583 11605594 . + . CHROMOSOME_X assembly_tag compression 11605597 11605602 . + . CHROMOSOME_X assembly_tag resolved 11606260 11606265 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 11606868 11606873 . + . CHROMOSOME_X assembly_tag resolved 11606874 11606879 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 11607281 11607289 . + . CHROMOSOME_X assembly_tag oligo 11607439 11607456 . + . Note "serial#=F52D10.18 template=wk29b4.s1 sequence=TTAAGCGTCTACCATTTG flags=" CHROMOSOME_X assembly_tag comment 11607576 11607831 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11610406 11610436 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11610437 11610565 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11610556 11610558 . + . CHROMOSOME_X assembly_tag oligo 11611214 11611230 . + . Note "serial#=F52D10.8 template=wk33f7.s1a sequence=TCCCCAGAATAAGGTTG flags=" CHROMOSOME_X assembly_tag comment 11611282 11611352 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11611353 11611447 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11611413 11611434 . + . CHROMOSOME_X assembly_tag comment 11614080 11614175 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11614162 11614177 . + . CHROMOSOME_X assembly_tag oligo 11614330 11614346 . + . Note "serial#=F52D10.9 template=wk30a6.s1 sequence=m13rGCCACAAAAGTCCATCG flags=" CHROMOSOME_X assembly_tag Finished 11614348 11614351 . + . Note "Left: Y71H9A" CHROMOSOME_X assembly_tag compression 11614424 11614439 . + . CHROMOSOME_X assembly_tag Finished 11614444 11614447 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11614444 11614447 . - . Note "right end: F52D10" CHROMOSOME_X assembly_tag annotation 11634458 11634630 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[x] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nCould be a couple more copies of the \ndimer CA" CHROMOSOME_X assembly_tag Clone 11635653 11635656 . + . Note "left end: T04F8" CHROMOSOME_X assembly_tag Clone 11635653 11635656 . + . Note "left end: T04F8" CHROMOSOME_X assembly_tag Finished 11635653 11635656 . + . Note "Left: T04F8" CHROMOSOME_X assembly_tag Finished 11635749 11635752 . - . Note "Right: Y71H9A" CHROMOSOME_X assembly_tag Clone 11664135 11664138 . + . Note "left end: C44C10" CHROMOSOME_X assembly_tag Finished 11673410 11673418 . + . Note "Left: C44C10" CHROMOSOME_X assembly_tag cosmid 11673519 11673524 . + . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11673518 11673524 . - . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11673519 11673524 . - . Note "vector: Clone right end of T04F8" CHROMOSOME_X assembly_tag Clone 11673521 11673524 . - . Note "right end: T04F8" CHROMOSOME_X assembly_tag Clone 11673521 11673524 . - . Note "right end: T04F8" CHROMOSOME_X assembly_tag Finished 11673521 11673524 . - . Note "Right: T04F8" CHROMOSOME_X assembly_tag compression 11674517 11674563 . - . CHROMOSOME_X assembly_tag compression 11675840 11675848 . - . CHROMOSOME_X assembly_tag compression 11678326 11678333 . - . CHROMOSOME_X assembly_tag compression 11678529 11678539 . - . CHROMOSOME_X assembly_tag repeat 11679007 11679046 . - . Note "Repeats with contig wk47a7.s1, offset 6641\n" CHROMOSOME_X assembly_tag repeat 11679007 11679046 . - . Note "Repeats with contig wn78c10.s1, offset 29449\n" CHROMOSOME_X assembly_tag repeat 11679019 11679057 . - . Note "Repeats with contig wn78c10.s1, offset 29654\n" CHROMOSOME_X assembly_tag repeat 11679019 11679057 . - . Note "Repeats with contig wk47a7.s1, offset 6846\n" CHROMOSOME_X assembly_tag repeat 11679068 11679119 . - . Note "Repeats with contig wn78c10.s1, offset 29592\n" CHROMOSOME_X assembly_tag repeat 11679068 11679119 . - . Note "Repeats with contig wk47a7.s1, offset 6784\n" CHROMOSOME_X assembly_tag repeat 11679127 11679154 . - . Note "Repeats with contig wn78c10.s1, offset 29449\n" CHROMOSOME_X assembly_tag repeat 11679127 11679154 . - . CHROMOSOME_X assembly_tag repeat 11679127 11679165 . - . CHROMOSOME_X assembly_tag repeat 11679127 11679165 . - . Note "Repeats with contig wn78c10.s1, offset 29762\n" CHROMOSOME_X assembly_tag repeat 11679176 11679227 . - . CHROMOSOME_X assembly_tag repeat 11679176 11679227 . - . Note "Repeats with contig wn78c10.s1, offset 29700\n" CHROMOSOME_X assembly_tag repeat 11679331 11679370 . - . Note "Repeats with contig wn78c10.s1, offset 29773\n" CHROMOSOME_X assembly_tag repeat 11679331 11679370 . - . CHROMOSOME_X assembly_tag repeat 11679343 11679370 . - . Note "Repeats with contig wn78c10.s1, offset 29665\n" CHROMOSOME_X assembly_tag repeat 11679343 11679370 . - . CHROMOSOME_X assembly_tag repeat 11681269 11681295 . - . CHROMOSOME_X assembly_tag repeat 11681269 11681295 . - . Note "Repeats with contig wn78c10.s1, offset 27353\n" CHROMOSOME_X assembly_tag repeat 11681440 11681466 . - . Note "Repeats with contig wn78c10.s1, offset 27524\n" CHROMOSOME_X assembly_tag repeat 11681440 11681466 . - . CHROMOSOME_X assembly_tag compression 11681563 11681573 . - . CHROMOSOME_X assembly_tag compression 11681650 11681668 . - . CHROMOSOME_X assembly_tag compression 11682839 11682851 . - . CHROMOSOME_X assembly_tag compression 11683139 11683158 . - . CHROMOSOME_X assembly_tag compression 11684856 11684870 . - . CHROMOSOME_X assembly_tag oligo 11685415 11685431 . + . Note "serial#=C44C10.5\ntemplate=wk42c5.s1 \nsequence=AAGTGGCATGGCTACTG\nflags=\n" CHROMOSOME_X assembly_tag oligo 11685582 11685598 . + . Note "serial#=C44C10.4\ntemplate=wn77d11.s1 \nsequence=ATTGGACGAGGAAGAGC\nflags=\n" CHROMOSOME_X assembly_tag oligo 11685731 11685747 . - . Note "serial#=C44C10.3\ntemplate=wk41c12.s1a \nsequence=GTCGATGACAACAAGTG\nflags=\n" CHROMOSOME_X assembly_tag compression 11687088 11687096 . - . CHROMOSOME_X assembly_tag compression 11687522 11687540 . + . CHROMOSOME_X assembly_tag compression 11687869 11687880 . + . CHROMOSOME_X assembly_tag annotation 11687889 11687906 . - . Note "possible point mutation \ncattt c gccaatt\ncattt gccaatt" CHROMOSOME_X assembly_tag compression 11689407 11689422 . + . CHROMOSOME_X assembly_tag compression 11691252 11691262 . + . CHROMOSOME_X assembly_tag compression 11691794 11691804 . + . CHROMOSOME_X assembly_tag compression 11692567 11692578 . + . CHROMOSOME_X assembly_tag compression 11695620 11695630 . + . CHROMOSOME_X assembly_tag compression 11695727 11695743 . + . CHROMOSOME_X assembly_tag compression 11700160 11700173 . - . CHROMOSOME_X assembly_tag compression 11701236 11701248 . - . CHROMOSOME_X assembly_tag oligo 11701957 11701973 . + . Note "serial#=C44C10.2\ntemplate=wk41g11.s1 \nsequence=GTTGTTTCCGTTGCCTC\nflags=\n" CHROMOSOME_X assembly_tag oligo 11702212 11702228 . - . Note "serial#=C44C10.1\ntemplate=wm48a12.s1 \nsequence=GAAACAACGGAAACGCC\nflags=\n" CHROMOSOME_X assembly_tag compression 11702454 11702471 . + . CHROMOSOME_X assembly_tag compression 11702507 11702525 . + . CHROMOSOME_X assembly_tag compression 11703352 11703369 . + . CHROMOSOME_X assembly_tag compression 11703417 11703429 . + . CHROMOSOME_X assembly_tag compression 11703577 11703592 . + . CHROMOSOME_X assembly_tag compression 11706042 11706055 . + . CHROMOSOME_X assembly_tag Clone 11706797 11706800 . + . Note "left end: D1053" CHROMOSOME_X assembly_tag cosmid 11706797 11706802 . + . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11706797 11706800 . - . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11706797 11706801 . - . Note "vector: " CHROMOSOME_X assembly_tag compression 11706977 11706993 . + . CHROMOSOME_X assembly_tag Finished 11708756 11708760 . + . Note "Left: D1053" CHROMOSOME_X assembly_tag cosmid 11708815 11708818 . + . Note "vector: " CHROMOSOME_X assembly_tag Clone 11708815 11708818 . - . Note "right end: C44C10" CHROMOSOME_X assembly_tag Finished 11708815 11708818 . - . Note "Right: C44C10" CHROMOSOME_X assembly_tag Clone 11708815 11708818 . - . Note "right end: C44C10" CHROMOSOME_X assembly_tag Finished 11769417 11769420 . + . Note "Left: Y102F5A" CHROMOSOME_X assembly_tag Clone 11769517 11769520 . + . Note "right end: C40H5" CHROMOSOME_X assembly_tag annotation 11776260 11780266 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -This region contains 3 different tandem repeat arrays. The first tandem repeat has copies of 27bp. The second tandem repeat has copies of 26bp. The third tandem repeat has copies of 11bp. The region contains false joins and also single clone regions." CHROMOSOME_X assembly_tag Clone 11781728 11781731 . + . Note "left end: left hand end of C34E11" CHROMOSOME_X assembly_tag Clone 11781728 11781731 . + . Note "left end: C34E11" CHROMOSOME_X assembly_tag Finished 11781828 11781831 . + . Note "Right: Y102F5A" CHROMOSOME_X assembly_tag annotation 11786602 11786638 . + . Note "-ve strand missing over bases 4875 to 4911 (36 bp). Terminator present on +ve strand." CHROMOSOME_X assembly_tag annotation 11787371 11787397 . + . Note "-ve strand missing over bases 5655 to 5670. Terminator present on +ve strand" CHROMOSOME_X assembly_tag annotation 11797109 11797185 . + . Note "-ve strand missing across bases 15381 to 15458 (77 bp). Terminator present across +ve strand." CHROMOSOME_X assembly_tag annotation 11800129 11800141 . + . Note "18402 to 18414 (12 bp) not d.s." CHROMOSOME_X assembly_tag annotation 11812232 11812250 . + . Note "bases 305005 - 30523 have no +ve strand terminated on -ve strand" CHROMOSOME_X assembly_tag Clone 11821480 11821483 . + . Note "right end: right hand end of C34E11 no overlap with F54F7" CHROMOSOME_X assembly_tag Clone 11821480 11821483 . + . Note "right end: C34E11" CHROMOSOME_X assembly_tag Clone 11823157 11823160 . + . Note "left end: F54F7" CHROMOSOME_X assembly_tag Clone 11823158 11823161 . + . Note "left end: left hand end of F54F7" CHROMOSOME_X assembly_tag annotation 11829574 11829786 . + . Note "Unique region between inverted repeat elements (6470 to 6630bp). Generally poor quality data and missing d.s. (-) data, but terminators done on all available + reads." CHROMOSOME_X assembly_tag annotation 11844106 11844170 . + . Note "Poor sequence on the -ve strand. Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 11850806 11850816 . + . Note "only 8 T's in the terminator but 9 in the other reads so left as 9." CHROMOSOME_X assembly_tag annotation 11860269 11860269 . + . Note "A single M13 clone has a C in this position. All other clones (6 +/6-) have a G. Edited accordingly." CHROMOSOME_X assembly_tag annotation 11863312 11863388 . + . Note "No -ve strand data over bases 40155 - 40231 (76 bp) caused by run of 32 ATs. Terminated on the +ve strand." CHROMOSOME_X assembly_tag Finished 11865718 11865721 . + . Note "Left: Y62H9A" CHROMOSOME_X assembly_tag Clone 11865818 11865821 . + . Note "right end: right hand end of F54F7" CHROMOSOME_X assembly_tag Clone 11865818 11865821 . - . Note "right end: F54F7" CHROMOSOME_X assembly_tag annotation 11876919 11878765 . + . Note "First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [X] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_X assembly_tag annotation 11878791 11880138 . + . Note "First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [X] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_X assembly_tag annotation 11910573 11910685 . + . Note "First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_X assembly_tag Clone 11913011 11913014 . + . Note "left end: F55G7" CHROMOSOME_X assembly_tag Clone 11913011 11913014 . + . Note "left end: Beginning of F55G7" CHROMOSOME_X assembly_tag Finished 11913111 11913114 . + . Note "Right: Y62H9A" CHROMOSOME_X assembly_tag annotation 11934878 11934925 . + . Note "Region of poor d.s. but sequence confirmed by terminator on opposite strand." CHROMOSOME_X assembly_tag Clone 11935272 11935275 . + . Note "left end: Beginning T08D10" CHROMOSOME_X assembly_tag Finished 11935272 11935275 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11935272 11935275 . + . Note "left end: Beginning of T08D10" CHROMOSOME_X assembly_tag annotation 11935955 11935955 . + . Note "missing C in this read only 9 + and 3 - do have C in this position" CHROMOSOME_X assembly_tag annotation 11937991 11937991 . + . Note "missing C from this read only 5 + and 4 - do have C in this position" CHROMOSOME_X assembly_tag annotation 11940796 11940796 . + . Note "missing G from this read only 4 + and 4 - do have G in this position" CHROMOSOME_X assembly_tag compression 11942188 11942188 . + . CHROMOSOME_X assembly_tag annotation 11945387 11945387 . + . Note "missing G in this read only 6 + and 7 - do have G in this position" CHROMOSOME_X assembly_tag Clone 11949201 11949204 . + . Note "left end: C49F5" CHROMOSOME_X assembly_tag Clone 11949201 11949204 . + . Note "left end: Beginning of C49F5" CHROMOSOME_X assembly_tag Finished 11949201 11949204 . + . Note "Left: C49F5" CHROMOSOME_X assembly_tag Finished 11949301 11949304 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11956690 11956693 . + . Note "right end: F55G7 end" CHROMOSOME_X assembly_tag Clone 11965170 11965173 . + . Note "right end: T08D10 end (T08D10 = redundant)" CHROMOSOME_X assembly_tag annotation 11965683 11965992 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is\nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11965993 11965996 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11965997 11966007 . + . Note "Only one clone across this region \nwhere the sequence of the tandem \nrepeats becomes inverted. Evidence \nfrom restriction digest (ECORI, SACI, \nXHOI) indicates there is nothing \nmissing from this assembly. " CHROMOSOME_X assembly_tag annotation 11966008 11966440 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11966441 11966661 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11966662 11966917 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11966918 11967185 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11967186 11967466 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11967467 11967786 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11967787 11968066 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. \n" CHROMOSOME_X assembly_tag annotation 11968067 11968477 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11968478 11968840 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11968841 11969163 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11969164 11969478 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. \n" CHROMOSOME_X assembly_tag annotation 11969479 11969802 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest." CHROMOSOME_X assembly_tag annotation 11969803 11970098 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11970099 11970357 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11970358 11970438 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 11978421 11978425 . + . Note "Sequence of this part of hairpin not\ndouble-stranded and not confirmed by \nterminator." CHROMOSOME_X assembly_tag annotation 11978429 11978434 . + . Note "Sequence of this part of hairpin not \ndouble-stranded and not confirmed by \nterminator." CHROMOSOME_X assembly_tag Finished 11988945 11988948 . + . Note "Left: W06B3" CHROMOSOME_X assembly_tag Clone 11989045 11989048 . + . Note "right end: C49F5" CHROMOSOME_X assembly_tag Clone 11989045 11989048 . + . Note "right end: C49F5 end" CHROMOSOME_X assembly_tag Finished 11989045 11989048 . + . Note "Right: C49F5" CHROMOSOME_X assembly_tag Finished 12008553 12008558 . + . Note "Left: VW06B3R" CHROMOSOME_X assembly_tag Clone 12008653 12008658 . + . Note "right end: W06B3" CHROMOSOME_X assembly_tag Finished 12008653 12008658 . + . Note "Right: W06B3" CHROMOSOME_X assembly_tag Clone 12008653 12008658 . - . Note "right end: W06B3" CHROMOSOME_X assembly_tag Clone 12010539 12010542 . + . Note "left end: START OF B0198" CHROMOSOME_X assembly_tag Clone 12010539 12010542 . + . Note "left end: B0198" CHROMOSOME_X assembly_tag Finished 12010639 12010642 . - . Note "Right: VW06B3R" CHROMOSOME_X assembly_tag annotation 12028409 12028462 . + . Note "NO d.s on +ve strand from 17875 to 17928. Sequence is confirmed on -ve strand by a terminator." CHROMOSOME_X assembly_tag annotation 12031843 12031871 . + . Note "NO d.s (+) from 21309 to 21338. Sequence confirmed by (-) terminator." CHROMOSOME_X assembly_tag annotation 12032390 12032433 . + . Note "NO d.s (+) from 21856 to 21901. Sequence confirmed by (-) terminator." CHROMOSOME_X assembly_tag annotation 12041053 12041115 . + . Note "no +ve read to d.s refer to terminator on -ve strand for confirmation." CHROMOSOME_X assembly_tag Clone 12041716 12041719 . + . Note "left end: left hand end of C15A7" CHROMOSOME_X assembly_tag Clone 12041716 12041719 . + . Note "left end: Start of C15A7" CHROMOSOME_X assembly_tag annotation 12052855 12052956 . + . Note "Missing + d.s. in this region, after run of 19 Cs From 11140 to 11240 (100 bp) Data confirmed by terminators on opposite strand." CHROMOSOME_X assembly_tag annotation 12053449 12053502 . + . Note "Region of poor d.s. (-), caused by run of Gs, from 11730 to 11780 (50bp) Data confirmed by terminator on + strand." CHROMOSOME_X assembly_tag Clone 12068684 12068687 . + . Note "left end: left hand end of W03G11" CHROMOSOME_X assembly_tag Clone 12068684 12068687 . + . Note "left end: left hand end of W03G11" CHROMOSOME_X assembly_tag annotation 12075278 12075294 . + . Note "17 G's. However, some reads show 16 G's" CHROMOSOME_X assembly_tag Clone 12084881 12084884 . + . Note "right end: right hand end of C15A7" CHROMOSOME_X assembly_tag annotation 12088008 12088024 . + . Note "no +ve strand on bases 19325 - 19340 terminator runs across this region on -ve strand (from PCR of cosmid DNA)" CHROMOSOME_X assembly_tag Clone 12099346 12099349 . + . Note "left end: left hand end of T01H10" CHROMOSOME_X assembly_tag Clone 12099346 12099349 . + . Note "left end: Beginning of T01H10" CHROMOSOME_X assembly_tag Clone 12113822 12113829 . + . Note "right end: Right end of W03G11." CHROMOSOME_X assembly_tag annotation 12116130 12116172 . + . Note "Terminator to confirm 43bp scrappy double-stranding." CHROMOSOME_X assembly_tag annotation 12119294 12119415 . + . Note "Area of poor quality d.s. but sequence confirmed by terminators on opposite strand. (Approx. 100bp)" CHROMOSOME_X assembly_tag annotation 12121162 12121204 . + . Note "Terminator to confirm 42 base pairs of poor double stranding." CHROMOSOME_X assembly_tag annotation 12128114 12128150 . + . Note "Terminator to cover 37 bp poor double-stranding." CHROMOSOME_X assembly_tag Clone 12130110 12130113 . + . Note "left end: Beginning of M153." CHROMOSOME_X assembly_tag Clone 12130110 12130113 . + . Note "left end: Beginning of M153" CHROMOSOME_X assembly_tag Finished 12130110 12130113 . + . Note "Left: M153" CHROMOSOME_X assembly_tag Clone 12139758 12139761 . + . Note "right end: End of T01H10." CHROMOSOME_X assembly_tag Finished 12146992 12146995 . + . Note "Left: F57G12" CHROMOSOME_X assembly_tag Clone 12146992 12146995 . + . Note "left end: Left end of F57G12." CHROMOSOME_X assembly_tag Clone 12146992 12146995 . + . Note "left end: Left end of F57G12." CHROMOSOME_X assembly_tag Finished 12146992 12146995 . + . Note "Left: F57G12" CHROMOSOME_X assembly_tag Finished 12147091 12147095 . + . Note "Right: M153" CHROMOSOME_X assembly_tag Finished 12147091 12147095 . + . Note "Right: M153" CHROMOSOME_X assembly_tag annotation 12156525 12156530 . + . Note "Two M13 clones were deleted from this point on, over an inverted repeat region" CHROMOSOME_X assembly_tag annotation 12167612 12167614 . + . Note "Sequence of these 3 bases (after a run of 6 Gs and before a run of 16 Gs) is unclear and we have not been able to establish them with any degree of confidence (most likely either Cs or Gs?dropout?." CHROMOSOME_X assembly_tag Clone 12172486 12172489 . + . Note "right end: Right end of M153" CHROMOSOME_X assembly_tag annotation 12178112 12178112 . + . Note "missing C from a single M13 clone" CHROMOSOME_X assembly_tag Clone 12181497 12181500 . + . Note "right end: Right end of F57G12." CHROMOSOME_X assembly_tag Finished 12181497 12181500 . + . Note "Right: F57G12" CHROMOSOME_X assembly_tag Finished 12189625 12189628 . + . Note "Left: C23H4" CHROMOSOME_X assembly_tag Clone 12189625 12189628 . - . Note "left end: START of C23H4" CHROMOSOME_X assembly_tag Clone 12213046 12213049 . - . Note "right end: END of W07A6" CHROMOSOME_X assembly_tag Clone 12221292 12221295 . + . Note "left end: START OF E01G6" CHROMOSOME_X assembly_tag Finished 12232251 12232254 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 12232351 12232354 . + . Note "right end: END of C23H4" CHROMOSOME_X assembly_tag Finished 12232351 12232354 . + . Note "Right: C23H4" CHROMOSOME_X assembly_tag Clone 12232351 12232354 . + . Note "right end: END OF C23H4" CHROMOSOME_X assembly_tag Finished 12258140 12258143 . + . Note "Left: H19J13" CHROMOSOME_X assembly_tag Clone 12258234 12258237 . + . Note "right end: END OF E01G6" CHROMOSOME_X assembly_tag Finished 12258234 12258237 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 12258234 12258237 . + . Note "right end: E01G6" CHROMOSOME_X assembly_tag Clone 12264800 12264803 . + . Note "left end: C04B4" CHROMOSOME_X assembly_tag Clone 12264800 12264803 . + . Note "left end: Beginning of C04B4 NB : NO OVERLAP WITH E01G6" CHROMOSOME_X assembly_tag Finished 12264800 12264803 . + . Note "Left: C04B4" CHROMOSOME_X assembly_tag Finished 12264900 12264903 . + . Note "Right: H19J13" CHROMOSOME_X assembly_tag Clone 12284277 12284284 . + . Note "left end: BEGINNING OF WO6D11 (= NOTI SITE) NOW REDUNDANT!!" CHROMOSOME_X assembly_tag Finished 12284279 12284282 . + . Note "Left: W06D11" CHROMOSOME_X assembly_tag Clone 12284279 12284282 . + . Note "left end: BEGINNING OF W06D11" CHROMOSOME_X assembly_tag Finished 12284379 12284383 . + . Note "Right: C04B4" CHROMOSOME_X assembly_tag Finished 12284379 12284383 . + . Note "Right: C04B4" CHROMOSOME_X assembly_tag annotation 12295781 12295781 . + . Note "T missing from this read. 15 other reads say T present." CHROMOSOME_X assembly_tag Finished 12296330 12296333 . + . Note "Left: F17A2" CHROMOSOME_X assembly_tag Clone 12296330 12296333 . + . Note "left end: Beginning of F17A2" CHROMOSOME_X assembly_tag Clone 12296330 12296333 . + . Note "left end: Beginning of F17A2" CHROMOSOME_X assembly_tag Finished 12296429 12296432 . + . Note "Right: W06D11" CHROMOSOME_X assembly_tag Clone 12298020 12298023 . + . Note "right end: End of C04B4" CHROMOSOME_X assembly_tag annotation 12301028 12301028 . + . Note "C missing from this clone, but 11 other clones have C present" CHROMOSOME_X assembly_tag annotation 12305095 12305095 . + . Note "G missing from this read, but 29 other reads say G" CHROMOSOME_X assembly_tag annotation 12306577 12306577 . + . Note "G missing from this clone, but 25 other clones have G present" CHROMOSOME_X assembly_tag Clone 12316818 12316821 . + . Note "left end: BEGINNING OF W06D11" CHROMOSOME_X assembly_tag Clone 12316818 12316821 . + . Note "right end: END OF W06D11" CHROMOSOME_X assembly_tag Clone 12330627 12330630 . + . Note "left end: BEGINNING OF F42F12" CHROMOSOME_X assembly_tag Clone 12330627 12330630 . + . Note "left end: BEGINNING OF F42F12" CHROMOSOME_X assembly_tag Finished 12330627 12330630 . + . Note "Left: F42F12" CHROMOSOME_X assembly_tag Finished 12330727 12330730 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 12333598 12333601 . + . Note "right end: END OF F17A2" CHROMOSOME_X assembly_tag stop 12350032 12350034 . + . CHROMOSOME_X assembly_tag Clone 12352200 12352203 . + . Note "left end: BEGINNING OF F19H6" CHROMOSOME_X assembly_tag Clone 12352200 12352203 . + . Note "left end: Beginning of F19H6" CHROMOSOME_X assembly_tag Clone 12352200 12352203 . + . Note "left end: left hand end of F19H6" CHROMOSOME_X assembly_tag Finished 12352300 12352303 . + . Note "Right: F42F12" CHROMOSOME_X assembly_tag annotation 12362219 12362234 . + . Note "no + strand bases 10020 - 10034 (16b) but terminator on the -ve strand " CHROMOSOME_X assembly_tag Clone 12367731 12367734 . + . Note "right end: End of F42F12" CHROMOSOME_X assembly_tag annotation 12370486 12370555 . + . Note "Approx 70 bp missing - d.s. (caused by sequence dying after run of Gs) but available strand (+) is terminated." CHROMOSOME_X assembly_tag annotation 12370537 12370557 . + . Note "Run of 21 Gs : fairly confident of the number. Some + reads go through the run but no - reads" CHROMOSOME_X assembly_tag annotation 12370558 12370611 . + . Note "Region of very poor quality d.s. (+) following run of 21 Gs. Terminator on both available strands but of poor quality (approx. 50 bp)." CHROMOSOME_X assembly_tag Clone 12381712 12381715 . + . Note "left end: Beginning of F17E5" CHROMOSOME_X assembly_tag Clone 12381712 12381715 . + . Note "left end: left hand end of F17E5" CHROMOSOME_X assembly_tag Clone 12393214 12393217 . + . Note "right end: End of F19H6" CHROMOSOME_X assembly_tag Clone 12393214 12393217 . + . Note "right end: right hand end of F19H6" CHROMOSOME_X assembly_tag annotation 12404643 12404691 . + . Note "Bases 22932 to 22980 (48bp) not d.s. but region covered by terminators" CHROMOSOME_X assembly_tag annotation 12404708 12404735 . + . Note "Walks leading into run of G's (looks like 17 G's) have ambiguous data over bases 22997 to 23007 but base counting looks correct" CHROMOSOME_X assembly_tag annotation 12404763 12404807 . + . Note "Bases 23052 to 23096 (44bp) not d.s. but data confirmed with terminators" CHROMOSOME_X assembly_tag Clone 12412161 12412164 . + . Note "left end: left hand end of T24D3" CHROMOSOME_X assembly_tag Clone 12412161 12412164 . + . Note "left end: left hand end of T24D3" CHROMOSOME_X assembly_tag Clone 12419581 12419584 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 12424534 12424572 . + . Note "bases 12374 - 12412 (38 bp) has no +ve strand terminated on -ve strand" CHROMOSOME_X assembly_tag Clone 12428404 12428407 . + . Note "left end: left hand end of T18D3" CHROMOSOME_X assembly_tag Clone 12428404 12428407 . + . Note "left end: left hand end of T18D3" CHROMOSOME_X assembly_tag annotation 12438380 12438404 . + . Note "No good +ve strand data bases 9976 - 10000. Terminated on the -ve strand. Region has tandem repeat element starting with the motif GACCT. Whole region of repeat is from 9834-10016. The repeat may be causing the messiness of the +ve walk with oligo.11" CHROMOSOME_X assembly_tag Clone 12447738 12447741 . + . Note "right end: right hand end of T24D3" CHROMOSOME_X assembly_tag annotation 12450055 12450120 . + . Note "Poor +ve strand data over bases 21651 - 21715. Terminated on the -ve strand" CHROMOSOME_X assembly_tag Clone 12460905 12460908 . + . Note "left end: left hand end of F45E6" CHROMOSOME_X assembly_tag Clone 12460905 12460908 . + . Note "left end: left hand end of F45E6" CHROMOSOME_X assembly_tag annotation 12462995 12463000 . + . Note "Poor quality data on +ve strand bases 2091 - 2096. Terminator on the -ve strand." CHROMOSOME_X assembly_tag Clone 12465756 12465759 . + . Note "right end: end of T18D3" CHROMOSOME_X assembly_tag annotation 12471373 12471413 . + . Note "Poor -ve strand over bases 10468 - 10508 (50bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12474064 12474104 . + . Note "No -ve strand data over bases 13159 - 13199 (40bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12474901 12474946 . + . Note "Poor -ve strand data over bases 13996 - 14040 (45 bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12478311 12478369 . + . Note "?No +ve strand data over bases 17416 - 17464 (50bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12485743 12485763 . + . Note "missing + d.s. terminated on -" CHROMOSOME_X assembly_tag annotation 12485762 12485812 . + . Note "No +ve strand data over bases 24837 - 24907 (70bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12486155 12486187 . + . Note "Poor + d.s. from 25255 to 25280 bp (25 bp) but terminated on _ strnd" CHROMOSOME_X assembly_tag annotation 12486331 12486382 . + . Note "No +ve strand data over bases 25426 - 25477(50 bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12487599 12487676 . + . Note "No -ve strand data over bases 26694 - 26812 (120bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12487677 12487716 . + . Note "No -ve strabd data over bases 26694 - 26812. Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12493206 12493360 . + . Note "F45E6 tandem repeats : Repeat region starts at position 32,300 and ends at position 32,455. 8 copies present in cosmid (19 and 20mers) CACGAAAAAATAGATTGTTA 1 CACGAAAAAATAGATTGTTA 2 CACGAAAAATAGATTGTTA 3 CACGAAAAATAGATTGTTA 4 CACGAAAAAATAGATTGGCA 5 TACGAAAAATAGATTGTTA 6 CACGAAAAATAGATTGTTA 7 CACGAAAAATAGGATGTTA 8a PCR using oligos .11 and .19 confirm cosmid fragment size as about 380 bp. PCR using the same oligos with genomic DNA gave a much larger fragment (about 1.6kb) suggesting that 60 to 70 copies of the repeat have been deleted from the cosmid (about 1.2kb deleted). There was a very weak band of the right size in the cosmid PCR. Another 10 copies of the repeat can be found in a minor contig (810) in the database. These are : CACGAAAAATAGATTGTTA 8b CACGAAAAAATAGATTGGCA 9 TACGAAAAATAGATTGTTA 10 CACGAAAAAATAGATTGTTA 11 CACGAAAAATAGATTGTTA 12 CACGAAAAATAGATTGTTA 13 CACGAAAAAATAGATTGGCA 14 TACGAAAAATAGATTGTTA 15 CACGAAAAATAGATTGTTA 16 CACGAAAAATAGATTGTTA 17 CACGAAAAATAGGATGTTA 18 (same as 8a)" CHROMOSOME_X assembly_tag annotation 12494092 12494119 . + . Note "no -ve strand data on bases 33380 - 33407 (30bp). Terminated on the +ve strand" CHROMOSOME_X assembly_tag Finished 12494844 12494847 . - . Note "Left: H20J18" CHROMOSOME_X assembly_tag Clone 12494848 12494851 . + . Note "left end: left hand end of C03C5" CHROMOSOME_X assembly_tag Clone 12494944 12494947 . - . Note "right end: F45E6" CHROMOSOME_X assembly_tag oligo 12495081 12495098 . + . Note "serial#=H20J18.4\ntemplate=sz59f6\nsequence=CATACATTGGACAGTCAG\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12495176 12495271 . - . CHROMOSOME_X assembly_tag oligo 12495337 12495356 . - . Note "serial#=H20J18.2\ntemplate=sz93b11\nsequence=GAATTTCAAACAAGCCATAC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12496151 12496238 . - . CHROMOSOME_X assembly_tag DSTM 12496623 12496623 . + . CHROMOSOME_X assembly_tag DSTM 12498335 12498632 . + . CHROMOSOME_X assembly_tag oligo 12498581 12498598 . + . Note "serial#=H20J18.3\ntemplate=\nsequence=TTGCGTTCACAAATTGAG\nflags=\n" CHROMOSOME_X assembly_tag annotation 12498695 12498836 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_X assembly_tag cosmid 12498837 12498845 . + . Note "vector: " CHROMOSOME_X assembly_tag oligo 12498925 12498941 . - . Note "serial#=H20J18.1\ntemplate=\nsequence=CAACATCTGCAAGCAGC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12498889 12499023 . - . CHROMOSOME_X assembly_tag DSTM 12500128 12500375 . - . CHROMOSOME_X assembly_tag oligo 12501784 12501801 . + . Note "serial#=H20J18.5\ntemplate=\nsequence=TTTTTATGGCACTGTTGG\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12503534 12503644 . - . CHROMOSOME_X assembly_tag Clone 12503645 12503648 . + . Note "left end: Beginning of C16D6" CHROMOSOME_X assembly_tag Finished 12503645 12503648 . + . Note "Left: C16D6" CHROMOSOME_X assembly_tag Clone 12503645 12503648 . - . Note "left end: C16D6" CHROMOSOME_X assembly_tag Finished 12503745 12503748 . - . Note "Right: H20J18" CHROMOSOME_X assembly_tag Clone 12533992 12533997 . + . Note "left end: BEGINNING OF R01H5" CHROMOSOME_X assembly_tag Clone 12533992 12533999 . - . Note "left end: Beginning of R01H5" CHROMOSOME_X assembly_tag Finished 12534092 12534095 . + . Note "Right: C16D6" CHROMOSOME_X assembly_tag Clone 12540798 12540801 . + . Note "right end: END OF C03C5" CHROMOSOME_X assembly_tag annotation 12551521 12551556 . + . Note "Missing - d.s. from bases 17533 to 17568 bp (approx 35 bp) due to run of Cs. Terminated on available + strand" CHROMOSOME_X assembly_tag annotation 12551554 12551555 . + . CHROMOSOME_X assembly_tag annotation 12551556 12551572 . + . Note "Most likely 19 Cs but difficult to be certain. Neither sequenase dye primers nor Taq terminators got through the run in either direction." CHROMOSOME_X assembly_tag annotation 12551577 12551627 . + . Note "Missing + d.s. from about 17580 to 17640 bp (60bp) due to run of Cs. Terminated on available - strand." CHROMOSOME_X assembly_tag annotation 12553150 12553180 . + . Note "No - d.s. from bases 19155 to 19185 (approx 30 bp). Confirmed by terminator on +" CHROMOSOME_X assembly_tag Clone 12556779 12556782 . + . Note "left end: BEGINNING OF T24D5" CHROMOSOME_X assembly_tag Clone 12556779 12556782 . + . Note "left end: Start of T24D5" CHROMOSOME_X assembly_tag Finished 12556779 12556782 . + . Note "Left: T24D5" CHROMOSOME_X assembly_tag annotation 12568579 12568603 . + . Note "A number of M13 clones were deleted over this region of tandem and inverted repeats. Restriction digest confirms assembly." CHROMOSOME_X assembly_tag annotation 12569145 12569148 . + . Note "4 bp not double-stranded and no terminator" CHROMOSOME_X assembly_tag Clone 12575671 12575676 . + . Note "right end: END OF R01H5" CHROMOSOME_X assembly_tag Clone 12594339 12594344 . + . Note "left end: START OF R09A8" CHROMOSOME_X assembly_tag Clone 12594339 12594344 . + . Note "left end: START OF R09A8" CHROMOSOME_X assembly_tag Finished 12594339 12594344 . + . Note "Left: R09A8" CHROMOSOME_X assembly_tag Finished 12594441 12594444 . + . Note "Right: T24D5" CHROMOSOME_X assembly_tag Clone 12595292 12595295 . + . Note "right end: END OF T24D5" CHROMOSOME_X assembly_tag Finished 12631380 12631383 . + . Note "Left: H36L18" CHROMOSOME_X assembly_tag Clone 12631478 12631483 . + . Note "right end: END OF R09A8" CHROMOSOME_X assembly_tag Finished 12631478 12631483 . + . Note "Right: R09A8" CHROMOSOME_X assembly_tag Clone 12631478 12631483 . + . Note "right end: R09A8" CHROMOSOME_X assembly_tag annotation 12636157 12636192 . + . Note "read 105 has 18 AT repeats but all \nother reads have only 17 copies.\nEdited to 18 copies." CHROMOSOME_X assembly_tag Clone 12645546 12645549 . + . Note "left end: C02B4" CHROMOSOME_X assembly_tag Clone 12645546 12645549 . + . Note "left end: ?left hand end of C02B4" CHROMOSOME_X assembly_tag Finished 12645646 12645649 . + . Note "Right: H36L18" CHROMOSOME_X assembly_tag annotation 12651595 12651616 . + . Note "-ve strand missing over bases 6051 - 6072. Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12657111 12657188 . + . Note "no -ve strand data over bases 11566 - 11644 (approx 80bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag Clone 12671279 12671282 . + . Note "left end: left hand end of T07C5" CHROMOSOME_X assembly_tag Clone 12671279 12671282 . + . Note "left end: left hand end of T07C5" CHROMOSOME_X assembly_tag annotation 12679208 12679224 . + . Note "Probably 17 Cs" CHROMOSOME_X assembly_tag Clone 12689986 12689989 . + . Note "right end: right hand end of C02B4" CHROMOSOME_X assembly_tag annotation 12690873 12690889 . + . Note "bases 19595 - 19611: poor -ve strand but has +ve terminator accross the region" CHROMOSOME_X assembly_tag Clone 12695947 12695950 . + . Note "left end: beginning of F16H9" CHROMOSOME_X assembly_tag Clone 12695947 12695950 . + . Note "left end: left hand end of F16H9" CHROMOSOME_X assembly_tag Clone 12705720 12705723 . + . Note "right end: end of T07C5" CHROMOSOME_X assembly_tag annotation 12715701 12715709 . + . Note "this read has 9 T's , though the majority read 8 T's" CHROMOSOME_X assembly_tag Clone 12717568 12717571 . + . Note "left end: beginning of F22E10" CHROMOSOME_X assembly_tag Clone 12717568 12717571 . + . Note "left end: Beginning of F22E10" CHROMOSOME_X assembly_tag Finished 12717568 12717571 . + . Note "Left: F22E10" CHROMOSOME_X assembly_tag annotation 12723225 12723225 . + . Note "A single M13 clone had a C in this position. All other reads (5 - and 5 +) have a T (consensus)." CHROMOSOME_X assembly_tag annotation 12725214 12725216 . + . Note "These 3 bases (gaa) missing from a single M13 clone. Region well-covered by other clones (>18 different M13s)" CHROMOSOME_X assembly_tag Clone 12735462 12735465 . + . Note "right end: END of F16H9" CHROMOSOME_X assembly_tag annotation 12748563 12748666 . + . Note "Dinucleotide repeat (TC) from 30996 bp to 31099 bp (approx 51 copies). Restriction digest (using HindIII) confirmed the size across this region." CHROMOSOME_X assembly_tag Clone 12754991 12754994 . + . Note "left end: left hand end of T22H6" CHROMOSOME_X assembly_tag Clone 12754991 12754994 . + . Note "left end: Start of T22H6" CHROMOSOME_X assembly_tag Finished 12755091 12755094 . + . Note "Right: F22E10" CHROMOSOME_X assembly_tag annotation 12755100 12755177 . + . Note "+ve strand data missing over bases 109 - 242 (130bp). Terminated on the -ve strand" CHROMOSOME_X assembly_tag annotation 12755178 12755229 . + . Note "+ve strand data missing over bases 109 - 242. Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12755230 12755232 . + . CHROMOSOME_X assembly_tag annotation 12780268 12780291 . + . Note "No =ve strand data over bases 25318 - 25341. Terminated on the -ve strand." CHROMOSOME_X assembly_tag Clone 12794583 12794586 . + . Note "left end: left hand end of C52G5" CHROMOSOME_X assembly_tag Finished 12794583 12794586 . + . Note "Left: C52G5" CHROMOSOME_X assembly_tag Clone 12794583 12794586 . + . Note "left end: left hand end of C52G5" CHROMOSOME_X assembly_tag Clone 12798068 12798071 . + . Note "right end: right hand end of T22H6" CHROMOSOME_X assembly_tag annotation 12833010 12833173 . + . Note "Very poor data from 38430 to 38590 bp (about 160bp) in region of an inverted repeat (approx 160bp each element and 50 bp unique loop) from about 38250 to 38650 bp. There are likely to be inaccuracies in the sequence of this region." CHROMOSOME_X assembly_tag Clone 12837321 12837324 . + . Note "left end: left hand end of T14G8" CHROMOSOME_X assembly_tag Clone 12837321 12837324 . + . Note "left end: Left end of T14G8." CHROMOSOME_X assembly_tag Finished 12837421 12837424 . + . Note "Right: C52G5" CHROMOSOME_X assembly_tag Clone 12838717 12838720 . + . Note "right end: Right end of C52G5." CHROMOSOME_X assembly_tag annotation 12846216 12846297 . + . Note "This region is covered by single clones only due to an inverted repeat. Cosmid&genomic PCR (and sequence) has confirmed this region." CHROMOSOME_X assembly_tag annotation 12861665 12861665 . + . Note "Missing base (G) from a single M13 clone (before and after termination) All other reads (7) have G present." CHROMOSOME_X assembly_tag Clone 12865195 12865198 . + . Note "left end: Left end of K02A4." CHROMOSOME_X assembly_tag Clone 12865195 12865198 . + . Note "left end: Beginning of K02A4" CHROMOSOME_X assembly_tag Clone 12870709 12870712 . + . Note "right end: right hand end of T14G8" CHROMOSOME_X assembly_tag Clone 12897642 12897645 . + . Note "left end: ?left hand end of C34E7" CHROMOSOME_X assembly_tag Clone 12897642 12897645 . + . Note "left end: Beginning of C34E7" CHROMOSOME_X assembly_tag Clone 12904429 12904432 . + . Note "right end: End of K02A4" CHROMOSOME_X assembly_tag Clone 12924549 12924552 . + . Note "left end: BEGINNING OF C05E7" CHROMOSOME_X assembly_tag Clone 12924549 12924552 . + . Note "left end: Beginning of C05E7" CHROMOSOME_X assembly_tag annotation 12930646 12930646 . + . Note "Missing C from one M13 clone only. All others have C (5 + reads and 2 - reads)." CHROMOSOME_X assembly_tag Clone 12938848 12938851 . + . Note "right end: END OF C34E7" CHROMOSOME_X assembly_tag Finished 12964735 12964738 . + . Note "Left: VF11C1L" CHROMOSOME_X assembly_tag Clone 12964831 12964834 . + . Note "right end: END OF C05E7" CHROMOSOME_X assembly_tag Clone 12964831 12964834 . + . Note "right end: C05E7" CHROMOSOME_X assembly_tag repeat 12968028 12968028 . + . Note "Repeats with contig zi23d9.s1, offset 195\n" CHROMOSOME_X assembly_tag cosmid 12968028 12968028 . + . Note "vector: " CHROMOSOME_X assembly_tag cosmid 12968028 12968029 . + . Note "vector: " CHROMOSOME_X assembly_tag Finished 12968028 12968031 . - . Note "Left: F11C1" CHROMOSOME_X assembly_tag Clone 12968028 12968031 . - . Note "left end: F11C1" CHROMOSOME_X assembly_tag Clone 12968028 12968031 . - . Note "left end: F11C1" CHROMOSOME_X assembly_tag Finished 12968128 12968131 . - . Note "Right: VF11C1L" CHROMOSOME_X assembly_tag repeat 12970086 12970145 . - . Note "Repeats with contig zi19g11.s1, offset 82\n" CHROMOSOME_X assembly_tag compression 12970388 12970400 . + . CHROMOSOME_X assembly_tag oligo 12972203 12972222 . - . Note "serial#=\ntemplate=zi20f9.s1 \nsequence=GTTTCCATCTAAAAATTGCC\nflags=\nF11C1.1" CHROMOSOME_X assembly_tag compression 12973201 12973211 . + . CHROMOSOME_X assembly_tag compression 12973295 12973310 . + . CHROMOSOME_X assembly_tag repeat 12973622 12973684 . - . CHROMOSOME_X assembly_tag repeat 12973562 12973689 . - . CHROMOSOME_X assembly_tag oligo 12973868 12973886 . + . Note "serial#=\ntemplate=zi11h12.s1 \nsequence=GAACTCTTTTTCTTTCCAG\nflags=\nF11.1" CHROMOSOME_X assembly_tag repeat 12975363 12975504 . - . CHROMOSOME_X assembly_tag repeat 12975363 12975568 . - . CHROMOSOME_X assembly_tag compression 12976607 12976613 . + . CHROMOSOME_X assembly_tag annotation 12976728 12976776 . - . Note "no +ve strand terminated -ve." CHROMOSOME_X assembly_tag compression 12977587 12977597 . + . CHROMOSOME_X assembly_tag resolved 12977674 12977680 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 12977674 12977680 . + . Note "confirm" CHROMOSOME_X assembly_tag compression 12979113 12979119 . + . CHROMOSOME_X assembly_tag compression 12979126 12979133 . + . CHROMOSOME_X assembly_tag compression 12979398 12979402 . + . CHROMOSOME_X assembly_tag compression 12979506 12979514 . + . CHROMOSOME_X assembly_tag compression 12979916 12979931 . + . CHROMOSOME_X assembly_tag compression 12980361 12980367 . + . CHROMOSOME_X assembly_tag compression 12981021 12981027 . + . CHROMOSOME_X assembly_tag compression 12981320 12981326 . + . CHROMOSOME_X assembly_tag compression 12981498 12981505 . + . CHROMOSOME_X assembly_tag oligo 12981584 12981600 . + . Note "serial#=\ntemplate=zi18g3.s1 \nsequence=CACTCGTCACACTCATC\nflags=\nf11.2" CHROMOSOME_X assembly_tag compression 12981737 12981743 . + . CHROMOSOME_X assembly_tag oligo 12981753 12981770 . + . Note "serial#=\nsequence=CTTTTCAACCGCTTTAAC\nflags=\nf11.3" CHROMOSOME_X assembly_tag oligo 12981969 12981991 . + . Note "serial#=\nsequence=GTATTTCAGGTAAAAAATACAGG\nflags=\nF11.4" CHROMOSOME_X assembly_tag compression 12982065 12982070 . + . CHROMOSOME_X assembly_tag oligo 12982139 12982156 . + . Note "serial#=\nsequence=CTATCGGAAGTGTTAGTG\nflags=\nf11.5" CHROMOSOME_X assembly_tag oligo 12982321 12982339 . + . Note "serial#=\nsequence=CTTGTCTTGAGATATTTGG\nflags=\nf11.6" CHROMOSOME_X assembly_tag oligo 12983034 12983051 . - . Note "serial#=\ntemplate=zi17g9.s1 \nsequence=AAGTTTTCAGAAACTCGC\nflags=\nF11C1.2" CHROMOSOME_X assembly_tag oligo 12983111 12983127 . + . Note "serial#=\ntemplate=zi10a2.t1 \nsequence=CGTTCCGAAGCAGATTC\nflags=\nf11.7" CHROMOSOME_X assembly_tag oligo 12983256 12983273 . + . Note "serial#=\ntemplate=zi18g3.f7a \nsequence=GTCAACTTCAAGACCAAG\nflags=\nF11C1.3" CHROMOSOME_X assembly_tag oligo 12984079 12984098 . - . Note "serial#=\ntemplate=zi18h7.s1 \nsequence=CATCTCTTTCCATAATAGTC\nflags=\nF11C1.4" CHROMOSOME_X assembly_tag compression 12984393 12984403 . + . CHROMOSOME_X assembly_tag compression 12984672 12984684 . + . CHROMOSOME_X assembly_tag annotation 12984893 12984922 . - . Note "no +ve strand terminated -ve." CHROMOSOME_X assembly_tag annotation 12984923 12984959 . - . Note "no +ve strand terminated -ve." CHROMOSOME_X assembly_tag compression 12985422 12985431 . + . CHROMOSOME_X assembly_tag compression 12985831 12985845 . + . CHROMOSOME_X assembly_tag compression 12985995 12986004 . + . CHROMOSOME_X assembly_tag compression 12986476 12986483 . + . CHROMOSOME_X assembly_tag repeat 12989256 12989366 . - . CHROMOSOME_X assembly_tag compression 12989624 12989637 . + . CHROMOSOME_X assembly_tag compression 12990454 12990471 . + . CHROMOSOME_X assembly_tag compression 12990631 12990643 . + . CHROMOSOME_X assembly_tag oligo 12991043 12991063 . + . Note "serial#=\ntemplate=zi21d5.s1 \nsequence=CATCGGTAAATTCTCAAAAAG\nflags=\nF11C1.5" CHROMOSOME_X assembly_tag compression 12991186 12991198 . + . CHROMOSOME_X assembly_tag annotation 12991621 12991634 . + . Note "no +ve strand but terminated -." CHROMOSOME_X assembly_tag compression 12991780 12991790 . + . CHROMOSOME_X assembly_tag compression 12991912 12991921 . + . CHROMOSOME_X assembly_tag compression 12992108 12992118 . + . CHROMOSOME_X assembly_tag compression 12993752 12993760 . + . CHROMOSOME_X assembly_tag compression 12993963 12993971 . + . CHROMOSOME_X assembly_tag oligo 12994810 12994827 . + . Note "serial#=\ntemplate=zi20d3.s1 \nsequence=TCGATTGAGAAACTTACG\nflags=\nF11.8" CHROMOSOME_X assembly_tag compression 12994932 12994938 . + . CHROMOSOME_X assembly_tag compression 12995035 12995047 . + . CHROMOSOME_X assembly_tag oligo 12995247 12995264 . + . Note "serial#=\ntemplate=zi21g11.s1 \nsequence=GAAGCGTCGTAATAGTTC\nflags=\nf11.9" CHROMOSOME_X assembly_tag oligo 12995372 12995389 . + . Note "serial#=\ntemplate=zi21g11.s1 \nsequence=CATGATGGTTATCGTTGG\nflags=\nf11.10" CHROMOSOME_X assembly_tag compression 12996406 12996425 . + . CHROMOSOME_X assembly_tag compression 12996627 12996634 . + . CHROMOSOME_X assembly_tag compression 12996760 12996769 . + . CHROMOSOME_X assembly_tag oligo 12996801 12996817 . + . Note "serial#=\ntemplate=zi19a12.s1 \nsequence=GCAATTTTTCGGTTCCC\nflags=\nf11.11" CHROMOSOME_X assembly_tag compression 12996846 12996853 . + . CHROMOSOME_X assembly_tag oligo 12996892 12996913 . + . Note "serial#=\ntemplate=zi19a12.s1 \nsequence=CGAAAATAAGTTGATGAAAACGf11.12\nflags=\n" CHROMOSOME_X assembly_tag oligo 12997076 12997093 . - . Note "serial#=\ntemplate=zh14f9.s1 \nsequence=AGAGAAAGATATGGAGTG\nflags=\nF11C1.6" CHROMOSOME_X assembly_tag oligo 12997151 12997168 . - . Note "serial#=\ntemplate=zi14f9.s1l \nsequence=AAGAAAATTTGCGTTGGC\nflags=\nf11.13" CHROMOSOME_X assembly_tag compression 12997412 12997415 . + . CHROMOSOME_X assembly_tag compression 12997943 12997950 . + . CHROMOSOME_X assembly_tag comment 12998188 12998201 . + . Note "?terminate" CHROMOSOME_X assembly_tag compression 12998707 12998717 . + . CHROMOSOME_X assembly_tag compression 12998724 12998741 . + . CHROMOSOME_X assembly_tag compression 12998791 12998804 . + . CHROMOSOME_X assembly_tag comment 12998834 12998842 . + . Note "?terminate" CHROMOSOME_X assembly_tag compression 12999039 12999054 . + . CHROMOSOME_X assembly_tag compression 12999102 12999113 . + . CHROMOSOME_X assembly_tag compression 12999608 12999618 . + . CHROMOSOME_X assembly_tag compression 13000049 13000063 . + . CHROMOSOME_X assembly_tag compression 13000089 13000093 . + . CHROMOSOME_X assembly_tag annotation 13000485 13000548 . - . Note "no -ve strand terminated +ve." CHROMOSOME_X assembly_tag compression 13000980 13000986 . + . Note "check" CHROMOSOME_X assembly_tag annotation 13001097 13001143 . - . Note "no -ve strand terminated +ve." CHROMOSOME_X assembly_tag annotation 13001385 13001398 . - . Note "no -ve strand terminated +ve." CHROMOSOME_X assembly_tag oligo 13001558 13001575 . - . Note "serial#=\ntemplate=zi11g3.s1 \nsequence=TGAAGACAAGAAAAAGCG\nflags=\nf11.14" CHROMOSOME_X assembly_tag compression 13001672 13001679 . + . CHROMOSOME_X assembly_tag oligo 13002261 13002278 . + . Note "serial#=\ntemplate=zi13c3.s1 \nsequence=ACCAAATGATTCTGTTGC\nflags=\nf11.17" CHROMOSOME_X assembly_tag oligo 13002278 13002294 . - . Note "serial#=\ntemplate=zi13d7.s1 \nsequence=GTTGTCCACGATGTTTG\nflags=\nf11.16" CHROMOSOME_X assembly_tag annotation 13002434 13002453 . - . CHROMOSOME_X assembly_tag oligo 13002458 13002475 . - . Note "serial#=\ntemplate=zi13d7.s1 \nsequence=TTGGAAGTTGATTGACTC\nflags=\nF11C1.7" CHROMOSOME_X assembly_tag annotation 13002453 13002491 . - . Note "NO +ve so terminated _ve." CHROMOSOME_X assembly_tag oligo 13002553 13002570 . - . Note "serial#=\ntemplate=zi13d7.s1 \nsequence=CGAGATAGATGAGTCAAG\n\nf11.15\nflags=\n" CHROMOSOME_X assembly_tag compression 13002619 13002629 . + . CHROMOSOME_X assembly_tag oligo 13002951 13002967 . - . Note "serial#=\nsequence=GGTCAAAAAGGGCTAAG\nflags=\nf11.20" CHROMOSOME_X assembly_tag annotation 13003048 13003082 . - . CHROMOSOME_X assembly_tag oligo 13003065 13003082 . - . CHROMOSOME_X assembly_tag annotation 13003083 13003159 . - . CHROMOSOME_X assembly_tag annotation 13003160 13003238 . - . Note "NO +ve so terminated -ve." CHROMOSOME_X assembly_tag oligo 13003269 13003288 . - . Note "serial#=\ntemplate=zi20e11.s1 \nsequence=CTATCCAACCAGAATAAATG\nflags=\nf11.18" CHROMOSOME_X assembly_tag compression 13003349 13003358 . + . CHROMOSOME_X assembly_tag compression 13003628 13003635 . + . CHROMOSOME_X assembly_tag repeat 13004367 13004437 . - . CHROMOSOME_X assembly_tag repeat 13005848 13005939 . - . CHROMOSOME_X assembly_tag compression 13007509 13007514 . + . CHROMOSOME_X assembly_tag oligo 13007524 13007542 . - . Note "serial#=\ntemplate=zi20h2.s1 \nsequence=CAGTTTTTTCTGTTAGTGC\nflags=\nf11.21" CHROMOSOME_X assembly_tag Finished 13008776 13008779 . + . Note "Left: C53C7" CHROMOSOME_X assembly_tag compression 13008832 13008838 . + . CHROMOSOME_X assembly_tag cosmid 13008878 13008879 . + . Note "vector: " CHROMOSOME_X assembly_tag Clone 13008876 13008879 . - . Note "right end: F11C1" CHROMOSOME_X assembly_tag Finished 13008876 13008879 . - . Note "Right: F11C1" CHROMOSOME_X assembly_tag Clone 13008876 13008879 . - . Note "right end: F11C1" CHROMOSOME_X assembly_tag cosmid 13008877 13008879 . - . Note "vector: " CHROMOSOME_X assembly_tag Clone 13042302 13042305 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13042302 13042305 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13042302 13042305 . + . Note "left end: Start of K03A11" CHROMOSOME_X assembly_tag Clone 13042302 13042305 . - . Note "left end: K03A11" CHROMOSOME_X assembly_tag Finished 13042402 13042405 . + . Note "Right: C53C7" CHROMOSOME_X assembly_tag annotation 13045776 13045778 . + . Note "This clone has CT here rather than CC" CHROMOSOME_X assembly_tag annotation 13046305 13046381 . + . CHROMOSOME_X assembly_tag annotation 13046382 13046442 . + . CHROMOSOME_X assembly_tag annotation 13046443 13046508 . + . CHROMOSOME_X assembly_tag annotation 13046509 13046586 . + . CHROMOSOME_X assembly_tag annotation 13046587 13046657 . + . CHROMOSOME_X assembly_tag annotation 13046658 13046671 . + . CHROMOSOME_X assembly_tag annotation 13050850 13050927 . + . CHROMOSOME_X assembly_tag annotation 13050928 13050938 . + . CHROMOSOME_X assembly_tag annotation 13051996 13052038 . + . CHROMOSOME_X assembly_tag annotation 13052039 13052105 . + . CHROMOSOME_X assembly_tag annotation 13052742 13052818 . + . CHROMOSOME_X assembly_tag annotation 13052819 13052866 . + . CHROMOSOME_X assembly_tag annotation 13053431 13053491 . + . CHROMOSOME_X assembly_tag annotation 13053492 13053546 . + . CHROMOSOME_X assembly_tag annotation 13056806 13056808 . + . Note "There is a G missing in this clone" CHROMOSOME_X assembly_tag annotation 13061108 13061166 . + . CHROMOSOME_X assembly_tag annotation 13066367 13066444 . + . CHROMOSOME_X assembly_tag annotation 13066445 13066497 . + . CHROMOSOME_X assembly_tag annotation 13068755 13068816 . + . CHROMOSOME_X assembly_tag annotation 13071102 13071169 . + . CHROMOSOME_X assembly_tag annotation 13071170 13071241 . + . CHROMOSOME_X assembly_tag Clone 13073295 13073300 . + . Note "left end: Left end of R03G8." CHROMOSOME_X assembly_tag Clone 13073295 13073300 . + . Note "left end: Start of R03G8" CHROMOSOME_X assembly_tag Finished 13073397 13073400 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13083702 13083705 . + . Note "right end: Right end of K03A11" CHROMOSOME_X assembly_tag annotation 13084263 13084298 . + . Note "Less than 50bp single strand, good terminator." CHROMOSOME_X assembly_tag Clone 13096983 13096986 . + . Note "left end: Left end of F17H10." CHROMOSOME_X assembly_tag annotation 13100966 13100982 . + . Note "unable to determine?" CHROMOSOME_X assembly_tag annotation 13102379 13102456 . + . Note "no -ve strand but terminators on the +ve." CHROMOSOME_X assembly_tag annotation 13102457 13102532 . + . CHROMOSOME_X assembly_tag annotation 13102532 13102608 . + . CHROMOSOME_X assembly_tag annotation 13102609 13102686 . + . CHROMOSOME_X assembly_tag annotation 13102687 13102717 . + . CHROMOSOME_X assembly_tag Clone 13110332 13110338 . + . Note "right end: End of R03G8." CHROMOSOME_X assembly_tag Clone 13116953 13116956 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13116953 13116956 . + . Note "left end: left end of F09A5" CHROMOSOME_X assembly_tag Clone 13116953 13116957 . + . Note "left end: start of F09A5" CHROMOSOME_X assembly_tag annotation 13122227 13122262 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13122263 13122314 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13122315 13122392 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13122393 13122468 . + . CHROMOSOME_X assembly_tag annotation 13122469 13122546 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13122547 13122623 . + . CHROMOSOME_X assembly_tag annotation 13122624 13122636 . + . CHROMOSOME_X assembly_tag Clone 13136620 13136622 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13136620 13136622 . + . Note "right end: right end of F17H10" CHROMOSOME_X assembly_tag Finished 13154268 13154271 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13154368 13154368 . + . Note "right end: End of F09A5" CHROMOSOME_X assembly_tag Clone 13154368 13154368 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13154368 13154371 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13154368 13154371 . + . Note "right end: F09A5" CHROMOSOME_X assembly_tag annotation 13159293 13159303 . + . Note "edited to max number (11) T's" CHROMOSOME_X assembly_tag Finished 13185619 13185622 . + . Note "Left: F09D5" CHROMOSOME_X assembly_tag Clone 13185719 13185722 . + . Note "right end: F48C11" CHROMOSOME_X assembly_tag Clone 13185719 13185722 . + . Note "right end: F48C11" CHROMOSOME_X assembly_tag Clone 13185719 13185722 . + . Note "right end: " CHROMOSOME_X assembly_tag Finished 13185719 13185722 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13194625 13194630 . + . Note "left end: R12H7" CHROMOSOME_X assembly_tag Clone 13194625 13194630 . + . Note "left end: Left end of R12H7. No overlapping cosmid." CHROMOSOME_X assembly_tag Finished 13194724 13194727 . + . Note "Right: F09D5" CHROMOSOME_X assembly_tag Clone 13215499 13215502 . + . Note "left end: K08H2" CHROMOSOME_X assembly_tag Clone 13215499 13215502 . + . Note "left end: Left end of K08H2" CHROMOSOME_X assembly_tag Finished 13215499 13215502 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13230696 13230704 . + . Note "right end: right end of R12H7" CHROMOSOME_X assembly_tag Clone 13230696 13230704 . + . Note "right end: r/h of R12H7" CHROMOSOME_X assembly_tag annotation 13241867 13242044 . + . Note "no pos strand. Neg strand terminated. Reads labelled k82z are terminators." CHROMOSOME_X assembly_tag Clone 13251934 13251937 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13251934 13251937 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13251934 13251937 . + . Note "left end: Left end of K09A11" CHROMOSOME_X assembly_tag Clone 13251934 13251937 . + . Note "left end: K09A11" CHROMOSOME_X assembly_tag Finished 13252034 13252037 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13259005 13259008 . + . Note "right end: Right end of K08H2" CHROMOSOME_X assembly_tag Clone 13272689 13272694 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13272689 13272694 . + . Note "left end: ?Start of R04D3" CHROMOSOME_X assembly_tag Clone 13272689 13272694 . + . Note "left end: Left end of R04D3" CHROMOSOME_X assembly_tag Finished 13272689 13272694 . + . Note "Left: " CHROMOSOME_X assembly_tag annotation 13290646 13290648 . + . Note "There is one C missing in this clone" CHROMOSOME_X assembly_tag annotation 13291350 13291401 . + . CHROMOSOME_X assembly_tag Clone 13292785 13292788 . + . Note "right end: Right hand end of K09A11" CHROMOSOME_X assembly_tag annotation 13293891 13293896 . + . Note "There are four bases (AGTT) missing from this clone" CHROMOSOME_X assembly_tag annotation 13295140 13295211 . + . CHROMOSOME_X assembly_tag annotation 13295212 13295238 . + . CHROMOSOME_X assembly_tag annotation 13296954 13297020 . + . CHROMOSOME_X assembly_tag annotation 13297021 13297034 . + . CHROMOSOME_X assembly_tag annotation 13297644 13297688 . + . CHROMOSOME_X assembly_tag annotation 13297689 13297766 . + . CHROMOSOME_X assembly_tag annotation 13297767 13297843 . + . CHROMOSOME_X assembly_tag annotation 13297844 13297919 . + . CHROMOSOME_X assembly_tag annotation 13297920 13297947 . + . CHROMOSOME_X assembly_tag annotation 13297948 13298020 . + . CHROMOSOME_X assembly_tag annotation 13298021 13298091 . + . CHROMOSOME_X assembly_tag annotation 13298129 13298204 . + . CHROMOSOME_X assembly_tag annotation 13298205 13298208 . + . CHROMOSOME_X assembly_tag annotation 13298209 13298250 . + . CHROMOSOME_X assembly_tag Clone 13298690 13298693 . + . Note "left end: Left end of F46G10" CHROMOSOME_X assembly_tag Clone 13298690 13298693 . + . Note "left end: ?Left end of F46G10" CHROMOSOME_X assembly_tag Clone 13298690 13298693 . + . Note "left end: Left end of F46G10" CHROMOSOME_X assembly_tag Finished 13298790 13298796 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13311132 13311137 . + . Note "right end: Right end of R04D3" CHROMOSOME_X assembly_tag annotation 13312572 13312595 . + . Note "20 Gs edited, possibly only 19. 4 Ts edited, possibly only 3." CHROMOSOME_X assembly_tag Finished 13339423 13339426 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13339423 13339426 . + . Note "left end: left end C49F8" CHROMOSOME_X assembly_tag Clone 13340909 13340912 . + . Note "right end: Right end of F46G10" CHROMOSOME_X assembly_tag Clone 13340909 13340912 . + . Note "right end: Right end of F46G10" CHROMOSOME_X assembly_tag Finished 13378754 13378757 . + . Note "Left: F02C12" CHROMOSOME_X assembly_tag Clone 13378754 13378757 . + . Note "left end: Left end of F02C12" CHROMOSOME_X assembly_tag Clone 13378754 13378757 . + . Note "left end: Left end of F02C12" CHROMOSOME_X assembly_tag Finished 13378854 13378857 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13398342 13398345 . + . Note "left end: Left end of C29F7" CHROMOSOME_X assembly_tag Clone 13398342 13398345 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13398342 13398345 . + . Note "Left: C29F7" CHROMOSOME_X assembly_tag Finished 13398442 13398445 . + . Note "Right: F02C12" CHROMOSOME_X assembly_tag Clone 13415629 13415632 . + . Note "right end: " CHROMOSOME_X assembly_tag Finished 13433821 13433824 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13433821 13433824 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13433821 13433824 . - . Note "left end: F02D10" CHROMOSOME_X assembly_tag Finished 13433921 13433924 . + . Note "Right: C29F7" CHROMOSOME_X assembly_tag annotation 13435854 13435929 . + . CHROMOSOME_X assembly_tag annotation 13435930 13435997 . + . CHROMOSOME_X assembly_tag Clone 13439378 13439381 . + . Note "right end: End of C29F7" CHROMOSOME_X assembly_tag Clone 13439378 13439381 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 13440350 13440368 . + . CHROMOSOME_X assembly_tag annotation 13440429 13440505 . + . CHROMOSOME_X assembly_tag annotation 13440506 13440514 . + . CHROMOSOME_X assembly_tag annotation 13442834 13442890 . + . CHROMOSOME_X assembly_tag annotation 13442961 13443030 . + . CHROMOSOME_X assembly_tag annotation 13443031 13443070 . + . CHROMOSOME_X assembly_tag annotation 13448684 13448756 . + . CHROMOSOME_X assembly_tag annotation 13448757 13448761 . + . CHROMOSOME_X assembly_tag Clone 13459079 13459082 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13459079 13459082 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13459079 13459082 . + . Note "left end: Start of F15A2" CHROMOSOME_X assembly_tag Finished 13459079 13459082 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13459173 13459179 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13466574 13466577 . + . Note "right end: Right end F02D10" CHROMOSOME_X assembly_tag annotation 13466574 13466577 . + . CHROMOSOME_X assembly_tag annotation 13470270 13470305 . + . Note "Single clone. Restriction digest confirms assembly." CHROMOSOME_X assembly_tag annotation 13470360 13470392 . + . Note "Single clone. Restriction digest confirms assembly." CHROMOSOME_X assembly_tag annotation 13486700 13486775 . + . Note "Number of GAs may not be accurate." CHROMOSOME_X assembly_tag Finished 13497036 13497039 . + . Note "Left: H06A10" CHROMOSOME_X assembly_tag Finished 13497136 13497139 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13497136 13497139 . + . Note "right end: F15A2" CHROMOSOME_X assembly_tag Clone 13497136 13497139 . - . Note "right end: F15A2" CHROMOSOME_X assembly_tag Clone 13508378 13508381 . + . Note "left end: F18H3" CHROMOSOME_X assembly_tag Clone 13508378 13508381 . + . Note "left end: Left end of F18H3" CHROMOSOME_X assembly_tag Finished 13508474 13508477 . - . Note "Right: H06A10" CHROMOSOME_X assembly_tag annotation 13513228 13513240 . + . Note "Some clones are calling 12 As, some are calling 13. (I've editted to 13)." CHROMOSOME_X assembly_tag Clone 13522571 13522576 . + . Note "left end: Left end of R01E6" CHROMOSOME_X assembly_tag Finished 13522571 13522576 . + . Note "Left: R01E6" CHROMOSOME_X assembly_tag Clone 13522571 13522576 . + . Note "left end: Left end R01E6" CHROMOSOME_X assembly_tag Clone 13545893 13545896 . + . Note "right end: Right end of F18H3" CHROMOSOME_X assembly_tag Finished 13563404 13563407 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13563404 13563407 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13563404 13563407 . + . Note "left end: Left end of F54B11" CHROMOSOME_X assembly_tag Clone 13563404 13563407 . + . Note "left end: Left end of F54B11" CHROMOSOME_X assembly_tag Finished 13563504 13563507 . + . Note "Right: R01E6" CHROMOSOME_X assembly_tag Clone 13563738 13563743 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13563738 13563743 . + . Note "right end: Right end of R01E6" CHROMOSOME_X assembly_tag annotation 13567519 13567523 . + . Note "This clone is missing a G here" CHROMOSOME_X assembly_tag annotation 13570537 13570543 . + . CHROMOSOME_X assembly_tag annotation 13574679 13574681 . + . CHROMOSOME_X assembly_tag annotation 13576309 13576329 . + . CHROMOSOME_X assembly_tag annotation 13576474 13576550 . + . CHROMOSOME_X assembly_tag annotation 13576551 13576580 . + . CHROMOSOME_X assembly_tag annotation 13577457 13577480 . + . CHROMOSOME_X assembly_tag annotation 13582395 13582471 . + . CHROMOSOME_X assembly_tag annotation 13582472 13582543 . + . CHROMOSOME_X assembly_tag annotation 13582891 13582893 . + . Note "There is a G missing from this clone here" CHROMOSOME_X assembly_tag annotation 13594028 13594102 . + . CHROMOSOME_X assembly_tag annotation 13594103 13594140 . + . CHROMOSOME_X assembly_tag annotation 13602043 13602067 . + . CHROMOSOME_X assembly_tag Finished 13604054 13604057 . + . Note "Left: Y12A6A" CHROMOSOME_X assembly_tag Clone 13604150 13604153 . + . Note "right end: " CHROMOSOME_X assembly_tag Finished 13604150 13604153 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13604150 13604153 . - . Note "right end: F54B11" CHROMOSOME_X assembly_tag Clone 13621452 13621455 . + . Note "left end: C40C9" CHROMOSOME_X assembly_tag Clone 13621452 13621455 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13621452 13621455 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13621548 13621551 . - . Note "Right: Y12A6A" CHROMOSOME_X assembly_tag Finished 13647556 13647559 . + . Note "Left: C04A11" CHROMOSOME_X assembly_tag Clone 13647556 13647559 . + . Note "left end: left end C04A11" CHROMOSOME_X assembly_tag Clone 13647556 13647559 . + . Note "left end: C04A11" CHROMOSOME_X assembly_tag Finished 13647656 13647659 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13663289 13663292 . + . Note "right end: C40C9" CHROMOSOME_X assembly_tag Clone 13663289 13663292 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 13682214 13682400 . + . Note "bases 34659 - 34840 (in the inverted\nrepeat over bases 34320 - 35050) covered by a single sonicated clone\nfrom a restriction fragment" CHROMOSOME_X assembly_tag Clone 13684558 13684561 . + . Note "left end: K02D3" CHROMOSOME_X assembly_tag Clone 13684558 13684561 . + . Note "left end: left end of K02D3" CHROMOSOME_X assembly_tag Finished 13684558 13684561 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13684658 13684661 . + . Note "Right: C04A11" CHROMOSOME_X assembly_tag Clone 13694558 13694561 . + . Note "right end: Right end C04A11" CHROMOSOME_X assembly_tag Clone 13704583 13704586 . + . Note "left end: K11E4" CHROMOSOME_X assembly_tag Clone 13704583 13704586 . + . Note "left end: K11E4" CHROMOSOME_X assembly_tag Finished 13704583 13704586 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13704683 13704686 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 13711253 13711263 . + . Note "All reads in K11E4 call 10 As. All reads in K02D3 call 11 As. I've edited to the maximum." CHROMOSOME_X assembly_tag Clone 13718170 13718173 . + . Note "right end: K02D3" CHROMOSOME_X assembly_tag annotation 13730344 13730365 . + . Note "Number of Cs may not be accurate." CHROMOSOME_X assembly_tag Finished 13738474 13738477 . + . Note "Left: Y6D6A" CHROMOSOME_X assembly_tag Clone 13738574 13738577 . + . Note "right end: K11E4" CHROMOSOME_X assembly_tag Finished 13738574 13738577 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13738574 13738577 . - . Note "right end: K11E4" CHROMOSOME_X assembly_tag Clone 13738662 13738665 . + . Note "left end: F55F3" CHROMOSOME_X assembly_tag Clone 13738662 13738665 . - . Note "left end: F55F3" CHROMOSOME_X assembly_tag Finished 13738662 13738665 . - . Note "Left: F55F3" CHROMOSOME_X assembly_tag Finished 13738758 13738761 . - . Note "Right: Y6D6A" CHROMOSOME_X assembly_tag annotation 13750409 13750428 . - . Note "Single stranded region in inverted \nrepeat. Assembly confirmed by \nrestriction digest." CHROMOSOME_X assembly_tag Clone 13761625 13761628 . - . Note "right end: ZK1086" CHROMOSOME_X assembly_tag annotation 13766146 13766171 . - . Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[X] Other \nComment: Number of Gs is uncertain\n" CHROMOSOME_X assembly_tag annotation 13777424 13777436 . - . Note "3 clones give 12 As. (edited to 13)\n6 clones give 13 As \n1 clone gives 14 As (edited to 13)" CHROMOSOME_X assembly_tag Clone 13781179 13781182 . - . Note "right end: F55F3" CHROMOSOME_X assembly_tag Finished 13781179 13781182 . - . Note "Right: F55F3" CHROMOSOME_X assembly_tag Finished 13798372 13798375 . + . Note "Left: F19D8" CHROMOSOME_X assembly_tag Clone 13798372 13798375 . + . Note "left end: F19D8" CHROMOSOME_X assembly_tag annotation 13798372 13798430 . + . CHROMOSOME_X assembly_tag annotation 13798431 13798446 . + . CHROMOSOME_X assembly_tag annotation 13798984 13799060 . + . CHROMOSOME_X assembly_tag annotation 13799061 13799070 . + . CHROMOSOME_X assembly_tag annotation 13805423 13805425 . + . Note "This clone has a T missing here" CHROMOSOME_X assembly_tag annotation 13806077 13806079 . + . Note "This clone has an A missing here" CHROMOSOME_X assembly_tag annotation 13806516 13806569 . + . CHROMOSOME_X assembly_tag annotation 13807100 13807133 . + . Note "terminated not double stranded" CHROMOSOME_X assembly_tag annotation 13808370 13808446 . + . CHROMOSOME_X assembly_tag annotation 13808447 13808454 . + . CHROMOSOME_X assembly_tag annotation 13812730 13812732 . + . Note "An A missing from this clone" CHROMOSOME_X assembly_tag annotation 13815144 13815204 . + . CHROMOSOME_X assembly_tag annotation 13815205 13815220 . + . CHROMOSOME_X assembly_tag annotation 13815221 13815227 . + . CHROMOSOME_X assembly_tag annotation 13815228 13815265 . + . CHROMOSOME_X assembly_tag annotation 13815266 13815275 . + . CHROMOSOME_X assembly_tag annotation 13816498 13816500 . + . Note "This clone has a T missing here" CHROMOSOME_X assembly_tag annotation 13818235 13818254 . + . CHROMOSOME_X assembly_tag oligo 13819067 13819086 . + . Note "serial#=\ntemplate=zl42a3.s1 \nsequence=GGTTGAAAAAACCGTTTAAC\nflags=\nF19D8.10 " CHROMOSOME_X assembly_tag annotation 13820810 13820813 . + . Note "There is a T missing from this clone" CHROMOSOME_X assembly_tag annotation 13821831 13821833 . + . Note "There is a A missing from this clone" CHROMOSOME_X assembly_tag annotation 13823845 13823922 . + . CHROMOSOME_X assembly_tag annotation 13823923 13823935 . + . CHROMOSOME_X assembly_tag annotation 13823934 13823986 . + . CHROMOSOME_X assembly_tag annotation 13825270 13825278 . + . CHROMOSOME_X assembly_tag annotation 13825279 13825310 . + . CHROMOSOME_X assembly_tag annotation 13826656 13826658 . + . Note "There is a T missing from this clone" CHROMOSOME_X assembly_tag Clone 13827668 13827671 . + . Note "left end: Left end of M03B6" CHROMOSOME_X assembly_tag Finished 13827668 13827671 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13827668 13827671 . + . Note "left end: M03B6" CHROMOSOME_X assembly_tag Finished 13827768 13827771 . + . Note "Right: F19D8" CHROMOSOME_X assembly_tag Clone 13835449 13835452 . + . Note "right end: F19D8" CHROMOSOME_X assembly_tag Clone 13835449 13835452 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 13835835 13835843 . + . Note "Single phagemid clone. Assembly confirmed by restriction digest." CHROMOSOME_X assembly_tag annotation 13835877 13835933 . + . Note "Single M13 clone. Assembly confirmed by restriction digest." CHROMOSOME_X assembly_tag annotation 13837288 13837296 . + . Note "Half the subclones read 9 Ts, half read 8. Edited to 9.." CHROMOSOME_X assembly_tag Clone 13854487 13854491 . + . Note "left end: Left end of T21H8" CHROMOSOME_X assembly_tag Finished 13854487 13854492 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13854587 13854590 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 13859713 13859786 . + . Note "No -vestrand so terminated + several times." CHROMOSOME_X assembly_tag annotation 13859787 13859834 . + . Note "No -ve strand so terminated the +ve several times." CHROMOSOME_X assembly_tag ambiguous 13859996 13860001 . + . CHROMOSOME_X assembly_tag annotation 13860641 13860643 . + . Note "reads only 9a's." CHROMOSOME_X assembly_tag annotation 13862661 13862674 . + . Note "This read is missing these edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13862929 13862940 . + . Note "This read here is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13864759 13864769 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13865300 13865314 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13867668 13867681 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13868089 13868102 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag Clone 13869830 13869833 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13869830 13869833 . + . Note "right end: M03B6" CHROMOSOME_X assembly_tag annotation 13870275 13870289 . + . Note "This read is missing these edited bases due to a mcchine fault." CHROMOSOME_X assembly_tag annotation 13874269 13874279 . + . Note "This read is missing these few bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13879145 13879160 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13880389 13880403 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13881430 13881447 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13881718 13881732 . + . Note "This read is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13881914 13881991 . + . Note "No +ve strand so terminated the -ve several times." CHROMOSOME_X assembly_tag annotation 13881992 13882069 . + . CHROMOSOME_X assembly_tag annotation 13882261 13882279 . + . Note "This read is missing these few edited bases due to a machine fault. So is am73f1 below." CHROMOSOME_X assembly_tag annotation 13882291 13882306 . + . Note "See zm73e1" CHROMOSOME_X assembly_tag annotation 13883423 13883488 . + . Note "So no +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13885553 13885568 . + . Note "This read is missing these edited bases because of a machine fault." CHROMOSOME_X assembly_tag annotation 13886323 13886338 . + . Note "This read has been edited here due to a machine fault." CHROMOSOME_X assembly_tag Finished 13892648 13892651 . + . Note "Left: Y26E6A" CHROMOSOME_X assembly_tag Finished 13892748 13892751 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13892748 13892751 . - . Note "right end: T21H8" CHROMOSOME_X assembly_tag Clone 13911249 13911252 . + . Note "left end: Left end of K02B9" CHROMOSOME_X assembly_tag Finished 13911249 13911252 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13911249 13911252 . + . Note "left end: K02B9" CHROMOSOME_X assembly_tag Finished 13911349 13911352 . - . Note "Right: Y26E6A" CHROMOSOME_X assembly_tag annotation 13937359 13937470 . + . Note "Uncloned gap. All reads labelled zl08j,09j,10j are cosmid pcr walks. Inverted repeat present. Numerous further attempts at clearer data have been made." CHROMOSOME_X assembly_tag Finished 13941995 13941998 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13941995 13941998 . + . Note "left end: left end of F48F7" CHROMOSOME_X assembly_tag Clone 13941995 13941998 . + . Note "left end: Left end of F48F7" CHROMOSOME_X assembly_tag Finished 13942095 13942098 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13947206 13947209 . + . Note "right end: Right end of K02B9" CHROMOSOME_X assembly_tag annotation 13971174 13971183 . + . Note "Single M13 clone confirmed by cosmid PCR. Part of hairpin loop. Restriction digest data confirms the assembly of this cosmid." CHROMOSOME_X assembly_tag Clone 13971711 13971714 . + . Note "left end: Left end of C31F10" CHROMOSOME_X assembly_tag Clone 13971711 13971714 . + . Note "left end: C31E10" CHROMOSOME_X assembly_tag Finished 13971711 13971714 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13971711 13971714 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13971811 13971814 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13983751 13983754 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13983751 13983754 . + . Note "right end: F48F7" CHROMOSOME_X assembly_tag annotation 13983755 13983828 . + . CHROMOSOME_X assembly_tag annotation 13983829 13983905 . + . CHROMOSOME_X assembly_tag annotation 13983906 13983983 . + . CHROMOSOME_X assembly_tag annotation 13983984 13984042 . + . CHROMOSOME_X assembly_tag annotation 13984043 13984119 . + . CHROMOSOME_X assembly_tag annotation 13984120 13984144 . + . CHROMOSOME_X assembly_tag annotation 13984198 13984250 . + . CHROMOSOME_X assembly_tag annotation 13984852 13984875 . + . CHROMOSOME_X assembly_tag annotation 13984876 13984933 . + . CHROMOSOME_X assembly_tag annotation 13984934 13984986 . + . CHROMOSOME_X assembly_tag annotation 13984987 13985063 . + . CHROMOSOME_X assembly_tag annotation 13985064 13985136 . + . CHROMOSOME_X assembly_tag annotation 13985137 13985213 . + . CHROMOSOME_X assembly_tag annotation 13985214 13985238 . + . CHROMOSOME_X assembly_tag annotation 13985239 13985297 . + . Note "terminated not double stranded" CHROMOSOME_X assembly_tag annotation 13985298 13985376 . + . Note "terminated, not double stranded" CHROMOSOME_X assembly_tag annotation 13985377 13985451 . + . CHROMOSOME_X assembly_tag annotation 13985452 13985493 . + . CHROMOSOME_X assembly_tag annotation 13985494 13985504 . + . CHROMOSOME_X assembly_tag annotation 13985505 13985578 . + . CHROMOSOME_X assembly_tag annotation 13985579 13985654 . + . CHROMOSOME_X assembly_tag annotation 13985655 13985701 . + . CHROMOSOME_X assembly_tag annotation 13985702 13985778 . + . CHROMOSOME_X assembly_tag annotation 13985779 13985852 . + . Note "?" CHROMOSOME_X assembly_tag annotation 13985853 13985930 . + . CHROMOSOME_X assembly_tag annotation 13985931 13986007 . + . CHROMOSOME_X assembly_tag annotation 13986008 13986085 . + . CHROMOSOME_X assembly_tag annotation 13986086 13986103 . + . CHROMOSOME_X assembly_tag annotation 13986104 13986180 . + . CHROMOSOME_X assembly_tag annotation 13986181 13986258 . + . CHROMOSOME_X assembly_tag annotation 13986259 13986260 . + . CHROMOSOME_X assembly_tag annotation 13986261 13986337 . + . CHROMOSOME_X assembly_tag annotation 13986338 13986355 . + . CHROMOSOME_X assembly_tag annotation 13989599 13989673 . + . CHROMOSOME_X assembly_tag annotation 13989674 13989733 . + . CHROMOSOME_X assembly_tag annotation 13989734 13989810 . + . CHROMOSOME_X assembly_tag annotation 13989811 13989872 . + . CHROMOSOME_X assembly_tag annotation 13989873 13989886 . + . CHROMOSOME_X assembly_tag annotation 13989887 13989945 . + . CHROMOSOME_X assembly_tag annotation 13989946 13989951 . + . CHROMOSOME_X assembly_tag annotation 13989952 13989954 . + . CHROMOSOME_X assembly_tag annotation 13989955 13990007 . + . Note "terminated not double stranded" CHROMOSOME_X assembly_tag annotation 13990127 13990204 . + . Note "terminated not double stranded" CHROMOSOME_X assembly_tag annotation 13990379 13990445 . + . CHROMOSOME_X assembly_tag annotation 13990446 13990523 . + . CHROMOSOME_X assembly_tag annotation 13990524 13990601 . + . CHROMOSOME_X assembly_tag annotation 13990602 13990651 . + . CHROMOSOME_X assembly_tag annotation 13990652 13990727 . + . Note "terminated not double stranded" CHROMOSOME_X assembly_tag annotation 13990728 13990760 . + . Note "terminated not double stranded" CHROMOSOME_X assembly_tag annotation 13990761 13990838 . + . CHROMOSOME_X assembly_tag annotation 13990839 13990914 . + . CHROMOSOME_X assembly_tag annotation 13990915 13990943 . + . CHROMOSOME_X assembly_tag annotation 13990944 13990978