##gff-version 2 ##date 2001-04-10 ##sequence-region CHROMOSOME_I 1 14972282 CHROMOSOME_I assembly_tag Finished 1 6 . + . Note "Left: cTel33B" CHROMOSOME_I assembly_tag Polymorphism 656 656 . + . Note "A->C in cTel33B" CHROMOSOME_I assembly_tag Polymorphism 668 668 . + . Note "A->C in cTel33B" CHROMOSOME_I assembly_tag Finished 2032 2036 . + . Note "Right: cTel33B" CHROMOSOME_I assembly_tag Finished 6926690 6926693 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 6926790 6926793 . + . Note "right end: C03F12 (St Louis)" CHROMOSOME_I assembly_tag Finished 6944615 6944618 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 6944715 6944718 . + . Note "right end: right end of H06O01" CHROMOSOME_I assembly_tag Finished 6944715 6944718 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 6944715 6944718 . + . Note "right end: H06O01 clone right end" CHROMOSOME_I assembly_tag Clone 6947491 6947494 . + . Note "left end: F15C11 clone left end" CHROMOSOME_I assembly_tag Finished 6947491 6947494 . + . Note "Left: F15C11" CHROMOSOME_I assembly_tag Clone 6947491 6947494 . + . Note "left end: START OF F15C11" CHROMOSOME_I assembly_tag Finished 6947591 6947594 . + . Note "Right: " CHROMOSOME_I assembly_tag Finished 6972075 6972078 . + . Note "Left: W01A8" CHROMOSOME_I assembly_tag Clone 6972075 6972078 . + . Note "left end: START OF W01A8" CHROMOSOME_I assembly_tag Clone 6972075 6972078 . + . Note "left end: START OF W01A8" CHROMOSOME_I assembly_tag Finished 6972175 6972178 . + . Note "Right: F15C11" CHROMOSOME_I assembly_tag Clone 6984412 6984415 . + . Note "right end: END OF F15C11" CHROMOSOME_I assembly_tag Finished 6997255 6997258 . + . Note "Left: F22D6" CHROMOSOME_I assembly_tag Clone 6997255 6997258 . + . Note "left end: START OF F22D6" CHROMOSOME_I assembly_tag Clone 6997255 6997258 . + . Note "left end: Clone left end F22D6" CHROMOSOME_I assembly_tag Finished 6997355 6997358 . + . Note "Right: W01A8" CHROMOSOME_I assembly_tag Clone 7008512 7008519 . + . Note "right end: End of W01A8" CHROMOSOME_I assembly_tag oligo 7011811 7011830 . + . Note "serial#=F22D6.1 template=xx96e2.s1 sequence=CTAACTCGTTCTATTTTAGC flags=" CHROMOSOME_I assembly_tag oligo 7014833 7014851 . + . Note "serial#=F22D6.7 template=xx95a4.s1tc sequence=GATCAATCTGATTATCGTC flags=" CHROMOSOME_I assembly_tag oligo 7017915 7017935 . + . Note "serial#=F22D6.4 template=xx98c8.s1 sequence=CAATCTTCGTTCTTTACTAAG flags=" CHROMOSOME_I assembly_tag oligo 7021649 7021670 . + . Note "serial#=F22D6.3 template=xx99b1.s1 sequence=CATTAATATCGACGATAGTAAG flags=" CHROMOSOME_I assembly_tag oligo 7022263 7022281 . + . Note "serial#=F22D6.6 template=xx95c7.s1 sequence=GCGAAAAACTAACATTAGC flags=" CHROMOSOME_I assembly_tag oligo 7023097 7023113 . + . Note "serial#=F22D7.2 template=xx94c12.s1t sequence=CATAACCATCTTCAGGC flags=" CHROMOSOME_I assembly_tag oligo 7023472 7023489 . + . Note "serial#=F22D6.8 template=xx96g8.s2a sequence=ATGGAATTAGGAAGTACG flags=" CHROMOSOME_I assembly_tag oligo 7038019 7038036 . + . Note "serial#=F22D6.5 template=xx97g2.s1 sequence=AAATGAATCTCCACTTCC flags=" CHROMOSOME_I assembly_tag Finished 7038645 7038648 . + . Note "Left: K10D3" CHROMOSOME_I assembly_tag Finished 7038745 7038748 . + . Note "Right: F22D6" CHROMOSOME_I assembly_tag Clone 7038745 7038748 . + . Note "right end: F22D6" CHROMOSOME_I assembly_tag Clone 7038745 7038748 . + . Note "right end: END OF F22D6" CHROMOSOME_I assembly_tag Finished 7069323 7069326 . + . Note "Left: H37N21" CHROMOSOME_I assembly_tag Clone 7069423 7069426 . + . Note "right end: K10D3" CHROMOSOME_I assembly_tag Clone 7069423 7069426 . + . Note "right end: K10D3" CHROMOSOME_I assembly_tag Finished 7069423 7069426 . + . Note "Right: K10D3" CHROMOSOME_I assembly_tag Finished 7074694 7074697 . + . Note "Left: K07G5" CHROMOSOME_I assembly_tag Clone 7074694 7074697 . + . Note "left end: K07G5" CHROMOSOME_I assembly_tag Clone 7074694 7074697 . + . Note "left end: K07G5" CHROMOSOME_I assembly_tag Finished 7074794 7074797 . + . Note "Right: H37N21" CHROMOSOME_I assembly_tag Clone 7096661 7096664 . + . Note "left end: M05B5" CHROMOSOME_I assembly_tag Finished 7096661 7096664 . + . Note "Left: M05B5" CHROMOSOME_I assembly_tag Clone 7096661 7096664 . + . Note "left end: Beginning of M05B5" CHROMOSOME_I assembly_tag Finished 7096761 7096764 . + . Note "Right: K07G5" CHROMOSOME_I assembly_tag Clone 7115700 7115703 . + . Note "left end: Beginning of C01H6" CHROMOSOME_I assembly_tag Finished 7115700 7115703 . + . Note "Left: C01H6" CHROMOSOME_I assembly_tag Clone 7115700 7115703 . + . Note "left end: Start of C01H6" CHROMOSOME_I assembly_tag Finished 7115801 7115804 . + . Note "Right: M05B5" CHROMOSOME_I assembly_tag Clone 7138596 7138599 . + . Note "right end: End of M05B5" CHROMOSOME_I assembly_tag repeat 7148169 7148215 . + . CHROMOSOME_I assembly_tag repeat 7148216 7148246 . + . CHROMOSOME_I assembly_tag repeat 7148297 7148329 . + . CHROMOSOME_I assembly_tag repeat 7148330 7148371 . + . CHROMOSOME_I assembly_tag Finished 7155955 7155958 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 7156055 7156058 . + . Note "right end: C01H6" CHROMOSOME_I assembly_tag Finished 7156055 7156058 . + . Note "Right: C01H6" CHROMOSOME_I assembly_tag Clone 7156055 7156058 . + . Note "right end: End of C01H6" CHROMOSOME_I assembly_tag Finished 7156241 7156246 . + . Note "Left: R06C7" CHROMOSOME_I assembly_tag Clone 7156241 7156246 . + . Note "left end: R06C7" CHROMOSOME_I assembly_tag Clone 7156241 7156246 . + . Note "left end: R06C7" CHROMOSOME_I assembly_tag Finished 7156341 7156346 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 7187048 7187051 . + . Note "left end: F21C3" CHROMOSOME_I assembly_tag Clone 7187048 7187051 . + . Note "left end: F21C3" CHROMOSOME_I assembly_tag Finished 7187048 7187051 . + . Note "Left: F21C3" CHROMOSOME_I assembly_tag Finished 7187148 7187151 . + . Note "Right: R06C7" CHROMOSOME_I assembly_tag Clone 7195760 7195765 . + . Note "right end: R06C7" CHROMOSOME_I assembly_tag Clone 7213139 7213142 . + . Note "left end: F13G3" CHROMOSOME_I assembly_tag Clone 7213139 7213142 . + . Note "left end: F13G3" CHROMOSOME_I assembly_tag Finished 7213139 7213142 . + . Note "Left: F13G3" CHROMOSOME_I assembly_tag Finished 7213239 7213242 . + . Note "Right: F21C3" CHROMOSOME_I assembly_tag Clone 7225166 7225169 . + . Note "right end: F21C3" CHROMOSOME_I assembly_tag annotation 7233806 7233806 . + . Note "A single M13 clone had a C in this position rather than a T (in another 5 clones)" CHROMOSOME_I assembly_tag Finished 7237585 7237588 . + . Note "Left: F52A8" CHROMOSOME_I assembly_tag Clone 7237585 7237588 . + . Note "left end: START OF F52A8" CHROMOSOME_I assembly_tag Clone 7237585 7237588 . + . Note "left end: F52A8" CHROMOSOME_I assembly_tag Finished 7237685 7237688 . + . Note "Right: F13G3" CHROMOSOME_I assembly_tag Clone 7253365 7253368 . + . Note "right end: End of F13G3" CHROMOSOME_I assembly_tag Clone 7272749 7272752 . + . Note "left end: START OF F07A5" CHROMOSOME_I assembly_tag Clone 7272749 7272752 . + . Note "left end: Start of F07A5" CHROMOSOME_I assembly_tag Finished 7272749 7272752 . + . Note "Left: F07A5" CHROMOSOME_I assembly_tag Finished 7272849 7272852 . + . Note "Right: F52A8" CHROMOSOME_I assembly_tag Clone 7277338 7277341 . + . Note "right end: F52A8" CHROMOSOME_I assembly_tag Clone 7305277 7305280 . + . Note "left end: C15A11" CHROMOSOME_I assembly_tag Clone 7305277 7305280 . + . Note "left end: Beginning of C15A11" CHROMOSOME_I assembly_tag Finished 7305277 7305280 . + . Note "Left: C15A11" CHROMOSOME_I assembly_tag Finished 7305377 7305380 . + . Note "Right: F07A5" CHROMOSOME_I assembly_tag Finished 7305377 7305380 . + . Note "Right: F07A5" CHROMOSOME_I assembly_tag Clone 7310894 7310897 . + . Note "right end: End of F07A5" CHROMOSOME_I assembly_tag Finished 7347127 7347130 . + . Note "Left: C44E1" CHROMOSOME_I assembly_tag Clone 7347227 7347230 . + . Note "right end: C15A11" CHROMOSOME_I assembly_tag Clone 7347227 7347230 . + . Note "right end: End of C15A11" CHROMOSOME_I assembly_tag Finished 7347227 7347230 . + . Note "Right: C15A11" CHROMOSOME_I assembly_tag Finished 7359611 7359614 . + . Note "Left: ZK524" CHROMOSOME_I assembly_tag Clone 7359611 7359614 . + . Note "left end: Beginning of ZK524" CHROMOSOME_I assembly_tag Clone 7359611 7359614 . + . Note "left end: ZK524\n" CHROMOSOME_I assembly_tag Finished 7359711 7359714 . + . Note "Right: C44E1" CHROMOSOME_I assembly_tag Clone 7389697 7389700 . + . Note "left end: T28F4" CHROMOSOME_I assembly_tag Finished 7389697 7389700 . + . Note "Left: T28F4" CHROMOSOME_I assembly_tag Clone 7389697 7389700 . + . Note "left end: Beginning of T28F4" CHROMOSOME_I assembly_tag Finished 7389797 7389800 . + . Note "Right: ZK524" CHROMOSOME_I assembly_tag Clone 7397478 7397481 . + . Note "right end: ZK524" CHROMOSOME_I assembly_tag Clone 7420160 7420163 . + . Note "left end: C26C6" CHROMOSOME_I assembly_tag Clone 7420160 7420163 . + . Note "left end: C26C6" CHROMOSOME_I assembly_tag Finished 7420160 7420163 . + . Note "Left: C26C6" CHROMOSOME_I assembly_tag Finished 7420260 7420263 . + . Note "Right: T28F4" CHROMOSOME_I assembly_tag Clone 7431077 7431080 . + . Note "right end: T28F4" CHROMOSOME_I assembly_tag Finished 7462528 7462531 . + . Note "Left: H15M21" CHROMOSOME_I assembly_tag Clone 7462628 7462631 . + . Note "right end: C26C6" CHROMOSOME_I assembly_tag Clone 7462628 7462631 . + . Note "right end: C26C6" CHROMOSOME_I assembly_tag Finished 7462628 7462631 . + . Note "Right: C26C6" CHROMOSOME_I assembly_tag Clone 7474500 7474503 . + . Note "left end: T25G3" CHROMOSOME_I assembly_tag Finished 7474500 7474503 . + . Note "Left: T25G3" CHROMOSOME_I assembly_tag Clone 7474500 7474503 . + . Note "left end: T25G3" CHROMOSOME_I assembly_tag Finished 7474600 7474603 . + . Note "Right: H15M21" CHROMOSOME_I assembly_tag Finished 7488925 7488928 . + . Note "Left: D2030" CHROMOSOME_I assembly_tag Clone 7488925 7488928 . + . Note "left end: START OF D2030" CHROMOSOME_I assembly_tag Clone 7488925 7488928 . + . Note "left end: D2030" CHROMOSOME_I assembly_tag Finished 7489025 7489028 . + . Note "Right: T25G3" CHROMOSOME_I assembly_tag annotation 7503700 7503746 . + . Note "single-stranded area confirmed by\nrestriction digest" CHROMOSOME_I assembly_tag Clone 7510021 7510024 . - . Note "right end: END OF T25G3" CHROMOSOME_I assembly_tag Clone 7510793 7510796 . + . Note "left end: Start of F57A5" CHROMOSOME_I assembly_tag Finished 7531486 7531489 . + . Note "Left: F57A5" CHROMOSOME_I assembly_tag Clone 7531586 7531589 . + . Note "right end: END OF D2030" CHROMOSOME_I assembly_tag Clone 7531586 7531589 . + . Note "right end: END OF D2030" CHROMOSOME_I assembly_tag Finished 7531586 7531589 . - . Note "Right: D2030" CHROMOSOME_I assembly_tag Finished 7531694 7531697 . + . Note "Left: F29D11" CHROMOSOME_I assembly_tag Clone 7531694 7531697 . + . Note "left end: START OF F29D11" CHROMOSOME_I assembly_tag Clone 7531694 7531697 . + . Note "left end: START OF F29D11" CHROMOSOME_I assembly_tag Finished 7531794 7531797 . + . Note "Right: F57A5" CHROMOSOME_I assembly_tag Clone 7551864 7551867 . + . Note "right end: END OF F57A5" CHROMOSOME_I assembly_tag Finished 7561500 7561503 . + . Note "Left: F26A3" CHROMOSOME_I assembly_tag Clone 7561500 7561503 . + . Note "left end: F26A3" CHROMOSOME_I assembly_tag Clone 7561500 7561503 . + . Note "left end: START OF F26A3" CHROMOSOME_I assembly_tag Finished 7561600 7561603 . + . Note "Right: F29D11" CHROMOSOME_I assembly_tag annotation 7562485 7562500 . + . Note "cosmid pcr" CHROMOSOME_I assembly_tag Clone 7574957 7574960 . + . Note "right end: F29D11" CHROMOSOME_I assembly_tag Finished 7599418 7599421 . + . Note "Left: T24B1" CHROMOSOME_I assembly_tag Finished 7599515 7599517 . + . Note "Right: F26A3" CHROMOSOME_I assembly_tag Finished 7599515 7599518 . + . Note "Right: F26A3" CHROMOSOME_I assembly_tag Clone 7599515 7599518 . + . Note "right end: F26A3" CHROMOSOME_I assembly_tag Clone 7599515 7599518 . + . Note "right end: F26A3" CHROMOSOME_I assembly_tag Clone 7601701 7601704 . + . Note "left end: Beginning of T23G11\n" CHROMOSOME_I assembly_tag Finished 7601701 7601704 . + . Note "Left: T23G11" CHROMOSOME_I assembly_tag Finished 7601701 7601704 . + . Note "Left: T23G11" CHROMOSOME_I assembly_tag Clone 7601701 7601704 . + . Note "left end: Beginning of T23G11\n" CHROMOSOME_I assembly_tag Finished 7601801 7601804 . + . Note "Right: T24B1" CHROMOSOME_I assembly_tag Clone 7626363 7626366 . + . Note "left end: Beginning of F27D4" CHROMOSOME_I assembly_tag Finished 7626363 7626366 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 7626459 7626462 . + . Note "Right: T23G11" CHROMOSOME_I assembly_tag Clone 7640446 7640449 . - . Note "left end: START OF F58H10" CHROMOSOME_I assembly_tag Finished 7662408 7662411 . + . Note "Left: F58H10" CHROMOSOME_I assembly_tag Clone 7662509 7662512 . + . Note "right end: F27D4" CHROMOSOME_I assembly_tag Finished 7662509 7662512 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 7682607 7682610 . + . Note "Left: ZK1014" CHROMOSOME_I assembly_tag Clone 7682707 7682710 . + . Note "right end: F58H10" CHROMOSOME_I assembly_tag Clone 7682707 7682710 . + . Note "right end: F58H10" CHROMOSOME_I assembly_tag Finished 7682707 7682710 . + . Note "Right: F58H10" CHROMOSOME_I assembly_tag Finished 7694097 7694100 . + . Note "Left: H15N14" CHROMOSOME_I assembly_tag Finished 7694197 7694200 . + . Note "Right: ZK1014" CHROMOSOME_I assembly_tag Clone 7694197 7694200 . + . Note "right end: ZK1014" CHROMOSOME_I assembly_tag Clone 7694197 7694200 . + . Note "right end: END OF ZK1014" CHROMOSOME_I assembly_tag annotation 7703817 7704183 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -sonicated single clone in inverted repeat region. Size confirmed byrestriction digest." CHROMOSOME_I assembly_tag Finished 7705153 7705156 . + . Note "Left: VH15N14R" CHROMOSOME_I assembly_tag Clone 7705253 7705256 . + . Note "right end: H15N14" CHROMOSOME_I assembly_tag Clone 7705253 7705256 . + . Note "right end: H15N14" CHROMOSOME_I assembly_tag Finished 7705253 7705256 . + . Note "Right: H15N14" CHROMOSOME_I assembly_tag Clone 7707412 7707415 . + . Note "left end: D2005" CHROMOSOME_I assembly_tag Finished 7707412 7707415 . + . Note "Left: D2005" CHROMOSOME_I assembly_tag Finished 7707512 7707515 . + . Note "Right: VH15N14R" CHROMOSOME_I assembly_tag annotation 7715307 7715673 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -sonicated single clone in inverted repeat region. Size confirmed byrestriction digest." CHROMOSOME_I assembly_tag Finished 7750749 7750752 . + . Note "Left: F30F8" CHROMOSOME_I assembly_tag Clone 7750849 7750852 . + . Note "right end: END OF D2005" CHROMOSOME_I assembly_tag Finished 7750849 7750852 . + . Note "Right: D2005" CHROMOSOME_I assembly_tag Finished 7775675 7775678 . + . Note "Left: R11A5" CHROMOSOME_I assembly_tag Clone 7775675 7775680 . + . Note "left end: R11A5" CHROMOSOME_I assembly_tag Clone 7775675 7775680 . + . Note "left end: START OF R11A5" CHROMOSOME_I assembly_tag Finished 7775775 7775778 . + . Note "Right: F30F8" CHROMOSOME_I assembly_tag Clone 7775775 7775778 . + . Note "right end: F30F8" CHROMOSOME_I assembly_tag annotation 7792055 7792069 . + . Note "tandem repeat across bases 16460 -\n16850. The repeat element is \nTCGTGGTGAGACCCA (15-mer)." CHROMOSOME_I assembly_tag annotation 7792176 7792190 . + . Note "tandem repeat across bases 16460 -\n16850. The repeat element is \nTCGTGGTGAGACCCA (15-mer)." CHROMOSOME_I assembly_tag annotation 7792418 7792452 . + . Note "tandem repeat across bases 16860 -\n17070. A typical repeat sequence is\nTTTTGGCGGGAAATTTAAATTTTCTGTGAAAAATA\n(a 35-mer)." CHROMOSOME_I assembly_tag annotation 7792539 7792573 . + . Note "tandem repeat across bases 16860 -\n17070. A typical repeat sequence is\nTTTTGGCGGGAAATTTAAATTTTCTGTGAAAAATA\n(a 35-mer)." CHROMOSOME_I assembly_tag annotation 7792682 7792722 . + . Note "tandem repeat across bases 17130 -\n17730. A typical repeat element is\nTCTTCTGGAAATTTCGAAAAAATTCTCGAATGTTCCAGAAC (41-mer). \nRestriction digests indicate that the true extent of \nthis repeat is ca 1.7kb longer than shown here." CHROMOSOME_I assembly_tag annotation 7792803 7792843 . + . Note "tandem repeat across bases 17130 -\n17730. A typical repeat element is\nTCTTCTGGAAATTTCGAAAAAATTCTCGAATGTTCCAGAAC (41-mer). \nRestriction digests indicate that the true extent of \nthis repeat is ca 1.7kb longer than shown here." CHROMOSOME_I assembly_tag Clone 7802242 7802245 . + . Note "left end: F55D12" CHROMOSOME_I assembly_tag Finished 7802242 7802245 . + . Note "Left: F55D12" CHROMOSOME_I assembly_tag Clone 7802242 7802245 . + . Note "left end: F55D12" CHROMOSOME_I assembly_tag Finished 7802342 7802345 . + . Note "Right: R11A5" CHROMOSOME_I assembly_tag annotation 7803371 7803406 . + . Note "base count is correct" CHROMOSOME_I assembly_tag Clone 7811264 7811269 . + . Note "right end: R11A5" CHROMOSOME_I assembly_tag Clone 7833269 7833272 . + . Note "left end: START OF F20G4" CHROMOSOME_I assembly_tag Clone 7833269 7833272 . + . Note "left end: F20G4" CHROMOSOME_I assembly_tag Finished 7833269 7833272 . + . Note "Left: F20G4" CHROMOSOME_I assembly_tag Stolen 7833269 7833319 . + . Note "Read: read Raided from F55D12" CHROMOSOME_I assembly_tag oligo 7833315 7833333 . + . Note "serial#=F20G4.1 template=xy90d12.s1 sequence=GCTGATTGAAAAGTTTTGC flags=" CHROMOSOME_I assembly_tag Finished 7833369 7833372 . + . Note "Right: F55D12" CHROMOSOME_I assembly_tag Clone 7857421 7857424 . + . Note "left end: T22C1" CHROMOSOME_I assembly_tag Finished 7857421 7857424 . + . Note "Left: T22C1" CHROMOSOME_I assembly_tag annotation 7859957 7859959 . + . Note "read 819 shows an A at base 2538 but read 928/65 shows a G. Edited to a G" CHROMOSOME_I assembly_tag Clone 7872580 7872583 . + . Note "right end: F20G4" CHROMOSOME_I assembly_tag Finished 7896828 7896831 . + . Note "Left: H05L14\n" CHROMOSOME_I assembly_tag Finished 7896928 7896931 . + . Note "Right: T22C1" CHROMOSOME_I assembly_tag Clone 7896928 7896931 . + . Note "right end: T22C1" CHROMOSOME_I assembly_tag Clone 7896928 7896931 . + . Note "right end: T22C1 clone right end\n" CHROMOSOME_I assembly_tag Finished 7916360 7916363 . + . Note "Left: C54G4" CHROMOSOME_I assembly_tag Clone 7916360 7916363 . + . Note "left end: START OF C54G4" CHROMOSOME_I assembly_tag Clone 7916360 7916363 . + . Note "left end: C54G4 clone left end\n" CHROMOSOME_I assembly_tag Finished 7916460 7916463 . + . Note "Right: H05L14\n" CHROMOSOME_I assembly_tag Clone 7950999 7951002 . + . Note "left end: START OF K04G2" CHROMOSOME_I assembly_tag Clone 7950999 7951002 . + . Note "left end: Beginning of K04G2" CHROMOSOME_I assembly_tag Finished 7950999 7951002 . + . Note "Left: K04G2" CHROMOSOME_I assembly_tag Finished 7951099 7951102 . + . Note "Right: C54G4" CHROMOSOME_I assembly_tag Clone 7954069 7954072 . + . Note "right end: End of C54G4" CHROMOSOME_I assembly_tag Clone 7983982 7983985 . + . Note "left end: F18C12" CHROMOSOME_I assembly_tag Finished 7983982 7983985 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 7989254 7989257 . + . Note "Right: K04G2" CHROMOSOME_I assembly_tag Clone 7989254 7989257 . + . Note "right end: End of K04G2" CHROMOSOME_I assembly_tag Clone 7989254 7989257 . + . Note "right end: K04G2" CHROMOSOME_I assembly_tag repeat 7994360 7994489 . + . CHROMOSOME_I assembly_tag repeat 7994490 7994538 . + . CHROMOSOME_I assembly_tag repeat 7994539 7994702 . + . CHROMOSOME_I assembly_tag repeat 8015566 8015591 . + . CHROMOSOME_I assembly_tag repeat 8018972 8019050 . + . CHROMOSOME_I assembly_tag repeat 8020366 8020391 . + . CHROMOSOME_I assembly_tag Finished 8021567 8021574 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8021667 8021670 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8021667 8021670 . + . Note "right end: F18C12" CHROMOSOME_I assembly_tag Clone 8021667 8021670 . - . Note "right end: F18C12" CHROMOSOME_I assembly_tag annotation 8029320 8029340 . + . Note "single clone across this region\nsequence cannot be guaranteed" CHROMOSOME_I assembly_tag Clone 8054857 8054860 . + . Note "left end: T28B8" CHROMOSOME_I assembly_tag Finished 8054857 8054860 . + . Note "Left: T28B8" CHROMOSOME_I assembly_tag Clone 8054857 8054860 . + . Note "left end: T28B8" CHROMOSOME_I assembly_tag Finished 8054957 8054965 . - . Note "Right: " CHROMOSOME_I assembly_tag comment 8066309 8066321 . + . Note "?do long term" CHROMOSOME_I assembly_tag annotation 8084423 8084490 . - . Note "34 AT's" CHROMOSOME_I assembly_tag repeat 8084461 8084490 . - . CHROMOSOME_I assembly_tag comment 8087093 8087098 . + . Note "?Diverges again" CHROMOSOME_I assembly_tag Finished 8088716 8088719 . + . Note "Left: H31B20" CHROMOSOME_I assembly_tag Clone 8088822 8088825 . - . Note "right end: T28B8" CHROMOSOME_I assembly_tag Clone 8088822 8088825 . - . Note "right end: T28B8" CHROMOSOME_I assembly_tag Finished 8088822 8088825 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 8103887 8103890 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8103887 8103890 . + . Note "left end: F08A10" CHROMOSOME_I assembly_tag Clone 8103887 8103890 . + . Note "left end: F08A10" CHROMOSOME_I assembly_tag Finished 8103992 8103995 . - . Note "Right: H31B20" CHROMOSOME_I assembly_tag Clone 8127559 8127562 . + . Note "left end: T02E1" CHROMOSOME_I assembly_tag Finished 8127559 8127562 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8127559 8127562 . + . Note "left end: T02E1" CHROMOSOME_I assembly_tag Finished 8127654 8127662 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 8137699 8137699 . + . Note "cosmid pcr region, this A could be a G." CHROMOSOME_I assembly_tag annotation 8137702 8137702 . + . Note "cosmid pcr region, this T could be an A." CHROMOSOME_I assembly_tag Clone 8140006 8140009 . - . Note "right end: F08A10" CHROMOSOME_I assembly_tag Finished 8160969 8160972 . + . Note "Left: ZK265" CHROMOSOME_I assembly_tag Clone 8160969 8160972 . + . Note "left end: ZK265" CHROMOSOME_I assembly_tag Clone 8160969 8160972 . + . Note "left end: ZK265" CHROMOSOME_I assembly_tag Finished 8161073 8161078 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8165133 8165136 . - . Note "right end: T02E1" CHROMOSOME_I assembly_tag annotation 8170317 8170332 . - . Note "Data from single clone only.\nRestriction data across this region\nconfirms assembly." CHROMOSOME_I assembly_tag Clone 8196932 8196935 . + . Note "left end: Left Hand End T01G9" CHROMOSOME_I assembly_tag Finished 8196932 8196935 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8196932 8196935 . + . Note "left end: T01G9" CHROMOSOME_I assembly_tag Finished 8197034 8197037 . - . Note "Right: ZK265" CHROMOSOME_I assembly_tag Clone 8199340 8199343 . + . Note "right end: Right Hand End ZK265" CHROMOSOME_I assembly_tag Finished 8220630 8220633 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8220630 8220633 . + . Note "left end: Left Hand End F52B5" CHROMOSOME_I assembly_tag Clone 8220630 8220633 . + . Note "left end: F52B5" CHROMOSOME_I assembly_tag Finished 8220737 8220740 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 8227516 8227516 . + . Note "T01G9 calls a clear C here" CHROMOSOME_I assembly_tag Clone 8238228 8238231 . + . Note "right end: T01G9" CHROMOSOME_I assembly_tag Finished 8253800 8253803 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8253800 8253803 . + . Note "left end: C34B7" CHROMOSOME_I assembly_tag Clone 8253800 8253803 . + . Note "left end: C34B7" CHROMOSOME_I assembly_tag Finished 8253896 8253903 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8255190 8255193 . - . Note "right end: F52B5" CHROMOSOME_I assembly_tag annotation 8261196 8261253 . + . Note "single clone across this region\nassembly confirmed be restriction \ndigest data" CHROMOSOME_I assembly_tag Clone 8276413 8276416 . + . Note "left end: F16D3" CHROMOSOME_I assembly_tag Clone 8276413 8276416 . + . Note "left end: F16D3" CHROMOSOME_I assembly_tag Finished 8276413 8276416 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8276513 8276519 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8293750 8293753 . - . Note "right end: C34B7" CHROMOSOME_I assembly_tag Finished 8308903 8308906 . + . Note "Left: T19A6" CHROMOSOME_I assembly_tag Clone 8309000 8309002 . - . Note "right end: F16D3" CHROMOSOME_I assembly_tag Clone 8309000 8309003 . - . Note "right end: F16D3" CHROMOSOME_I assembly_tag Finished 8309000 8309003 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8309000 8309003 . - . Note "right end: F16D3" CHROMOSOME_I assembly_tag Finished 8328286 8328289 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8328286 8328289 . + . Note "left end: F02E9" CHROMOSOME_I assembly_tag Clone 8328286 8328289 . + . Note "left end: F02E9" CHROMOSOME_I assembly_tag Finished 8328382 8328385 . - . Note "Right: T19A6" CHROMOSOME_I assembly_tag annotation 8344687 8344687 . + . Note "could be T" CHROMOSOME_I assembly_tag annotation 8344688 8344688 . + . Note "could be G" CHROMOSOME_I assembly_tag annotation 8344691 8344691 . + . Note "could be T" CHROMOSOME_I assembly_tag annotation 8344692 8344692 . + . Note "could be A" CHROMOSOME_I assembly_tag annotation 8344694 8344694 . + . Note "could be A" CHROMOSOME_I assembly_tag annotation 8344697 8344697 . + . Note "could be T" CHROMOSOME_I assembly_tag annotation 8344700 8344706 . + . Note "base accuracy not guaranteed in this \nregion.\ncould be TGTTGTG" CHROMOSOME_I assembly_tag Finished 8357264 8357267 . + . Note "Left: F10D11" CHROMOSOME_I assembly_tag Clone 8357264 8357267 . + . Note "left end: F10D11" CHROMOSOME_I assembly_tag Clone 8357264 8357267 . + . Note "left end: F10D11" CHROMOSOME_I assembly_tag Finished 8357363 8357366 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8376160 8376163 . - . Note "right end: ZK254" CHROMOSOME_I assembly_tag annotation 8378670 8378692 . + . Note "Divergence between F10D11 & D1081" CHROMOSOME_I assembly_tag Finished 8378693 8378696 . + . Note "Left: D1081" CHROMOSOME_I assembly_tag Finished 8378764 8378767 . - . Note "Right: F10D11" CHROMOSOME_I assembly_tag Clone 8394306 8394309 . - . Note "right end: F10D11" CHROMOSOME_I assembly_tag Finished 8416950 8416953 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8416950 8416953 . + . Note "left end: K02B12" CHROMOSOME_I assembly_tag Clone 8416950 8416953 . + . Note "left end: K02B12" CHROMOSOME_I assembly_tag Finished 8417045 8417048 . - . Note "Right: D1081" CHROMOSOME_I assembly_tag Clone 8419611 8419614 . - . Note "right end: D1081" CHROMOSOME_I assembly_tag Finished 8455385 8455391 . + . Note "Left: M04C7" CHROMOSOME_I assembly_tag Finished 8455487 8455490 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8455487 8455490 . - . Note "right end: K02B12" CHROMOSOME_I assembly_tag Clone 8455487 8455490 . - . Note "right end: K02B12" CHROMOSOME_I assembly_tag Clone 8474246 8474249 . + . Note "left end: T01H8" CHROMOSOME_I assembly_tag Clone 8474246 8474249 . + . Note "left end: T01H8" CHROMOSOME_I assembly_tag Finished 8474246 8474249 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8474343 8474348 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 8502834 8502839 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8502834 8502839 . + . Note "left end: R05D11" CHROMOSOME_I assembly_tag Clone 8502834 8502839 . + . Note "left end: R05D11" CHROMOSOME_I assembly_tag Finished 8502943 8502946 . - . Note "Right: " CHROMOSOME_I assembly_tag ambiguous 8503286 8503286 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8503287 8503287 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8503981 8503981 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8504488 8504488 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8505178 8505196 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag ambiguous 8505273 8505273 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8505558 8505558 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8506393 8506393 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8506406 8506406 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_I assembly_tag ambiguous 8507314 8507331 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag Conflict 8507340 8507340 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8507749 8507749 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8507926 8507926 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8510683 8510683 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8510976 8510976 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8510980 8510980 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8511166 8511166 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8511937 8511937 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8512269 8512275 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag Conflict 8512791 8512791 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8512792 8512792 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8512793 8512793 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag stop 8513308 8513311 . + . CHROMOSOME_I assembly_tag Conflict 8513394 8513394 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8514649 8514649 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8514681 8514681 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8514793 8514793 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8515089 8515089 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8515153 8515153 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8515693 8515693 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag stop 8516835 8516837 . + . CHROMOSOME_I assembly_tag ambiguous 8520363 8520367 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag Conflict 8520377 8520377 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8520387 8520387 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8520463 8520463 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8521066 8521066 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_I assembly_tag stop 8522691 8522697 . + . CHROMOSOME_I assembly_tag ambiguous 8522826 8522826 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag ambiguous 8522832 8522832 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8523777 8523777 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8524616 8524636 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_I assembly_tag ambiguous 8524879 8524879 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag stop 8525340 8525342 . + . CHROMOSOME_I assembly_tag Conflict 8525759 8525759 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8525929 8525929 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8526255 8526255 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag ambiguous 8527450 8527450 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_I assembly_tag Conflict 8528217 8528217 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8528379 8528379 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Conflict 8528381 8528381 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_I assembly_tag Clone 8529050 8529053 . + . Note "left end: F43G9" CHROMOSOME_I assembly_tag Finished 8529050 8529053 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8529050 8529053 . + . Note "left end: F43G9" CHROMOSOME_I assembly_tag Stolen 8529050 8529132 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8529050 8529170 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8529050 8529177 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8529050 8529231 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8529153 8529467 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Stolen 8529154 8529192 . + . Note "Read: read Raided from F43G9" CHROMOSOME_I assembly_tag Finished 8529155 8529158 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8546337 8546342 . + . Note "right end: R05D11" CHROMOSOME_I assembly_tag Finished 8567116 8567119 . + . Note "Left: VF39H2l" CHROMOSOME_I assembly_tag Clone 8567212 8567215 . - . Note "right end: F43G9" CHROMOSOME_I assembly_tag Finished 8567212 8567215 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8567212 8567215 . - . Note "right end: F43G9" CHROMOSOME_I assembly_tag annotation 8568525 8568534 . + . Note "uncertain number of A's, edited to the\nlongest run with several representatives." CHROMOSOME_I assembly_tag Clone 8571874 8571877 . + . Note "left end: F39H2" CHROMOSOME_I assembly_tag Finished 8571874 8571877 . + . Note "Left: F39H2" CHROMOSOME_I assembly_tag Clone 8571874 8571877 . + . Note "left end: F39H2" CHROMOSOME_I assembly_tag Finished 8571972 8571975 . - . Note "Right: VF39H2l" CHROMOSOME_I assembly_tag Finished 8589423 8589426 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8589423 8589426 . + . Note "left end: K07A12" CHROMOSOME_I assembly_tag Clone 8589423 8589426 . + . Note "left end: K07A12" CHROMOSOME_I assembly_tag Finished 8589520 8589525 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8613586 8613589 . - . Note "right end: F39H2" CHROMOSOME_I assembly_tag Clone 8618413 8618416 . + . Note "left end: F39H11" CHROMOSOME_I assembly_tag Clone 8618413 8618416 . + . Note "left end: F39H11" CHROMOSOME_I assembly_tag Finished 8618413 8618416 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 8618525 8618528 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 8623269 8623269 . + . Note "Cosmid PCR could read T." CHROMOSOME_I assembly_tag Clone 8626099 8626102 . - . Note "right end: K07A12" CHROMOSOME_I assembly_tag Clone 8637327 8637330 . + . Note "left end: C36B1" CHROMOSOME_I assembly_tag Finished 8637327 8637330 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8637327 8637330 . + . Note "left end: C36B1" CHROMOSOME_I assembly_tag Finished 8637432 8637436 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 8642930 8642930 . + . Note "One clone calls a C instead of T. Edited to majority." CHROMOSOME_I assembly_tag Clone 8655221 8655224 . + . Note "right end: F39H11" CHROMOSOME_I assembly_tag Finished 8682219 8682222 . + . Note "Left: DY3" CHROMOSOME_I assembly_tag Finished 8682319 8682322 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 8682319 8682322 . + . Note "right end: C36B1" CHROMOSOME_I assembly_tag Clone 8682319 8682322 . - . Note "right end: C36B1" CHROMOSOME_I assembly_tag annotation 8697234 8697336 . + . Note "May be some discrepancies as sequence\nderived from YAC PCR." CHROMOSOME_I assembly_tag annotation 8697337 8697420 . + . Note "May be some discrepancies as sequence\nderived from YAC PCR." CHROMOSOME_I assembly_tag annotation 8697421 8697470 . + . Note "May be some discrepancies as sequence\nderived from YAC PCR." CHROMOSOME_I assembly_tag annotation 8715378 8715418 . + . Note "May be some discrepancies as sequence\nderived from a single YAC clone." CHROMOSOME_I assembly_tag Clone 8724848 8724851 . + . Note "left end: F36A2" CHROMOSOME_I assembly_tag Finished 8724848 8724851 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8724848 8724851 . + . Note "left end: F36A2" CHROMOSOME_I assembly_tag Finished 8724949 8724952 . - . Note "Right: DY3" CHROMOSOME_I assembly_tag Finished 8758162 8758165 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8758162 8758165 . + . Note "left end: F29D10" CHROMOSOME_I assembly_tag Clone 8758162 8758165 . + . Note "left end: F29D10" CHROMOSOME_I assembly_tag Finished 8758272 8758275 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8763954 8763957 . - . Note "right end: F36A2" CHROMOSOME_I assembly_tag Finished 8782005 8782008 . + . Note "Left: F55H12" CHROMOSOME_I assembly_tag Clone 8782005 8782008 . + . Note "left end: F55H12" CHROMOSOME_I assembly_tag Clone 8782005 8782008 . + . Note "left end: F55H12" CHROMOSOME_I assembly_tag Finished 8782110 8782113 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8793272 8793275 . - . Note "right end: F29D10" CHROMOSOME_I assembly_tag Clone 8804464 8804467 . + . Note "left end: T27B12" CHROMOSOME_I assembly_tag Clone 8819969 8819972 . + . Note "left end: T08G11" CHROMOSOME_I assembly_tag Finished 8819969 8819972 . + . Note "Left: T08G11" CHROMOSOME_I assembly_tag Clone 8819969 8819972 . + . Note "left end: T08G11" CHROMOSOME_I assembly_tag Finished 8820071 8820074 . - . Note "Right: F55H12" CHROMOSOME_I assembly_tag Clone 8825381 8825384 . - . Note "right end: F55H12" CHROMOSOME_I assembly_tag Clone 8838389 8838392 . - . Note "right end: T27B12" CHROMOSOME_I assembly_tag Clone 8850783 8850786 . + . Note "left end: F53B6" CHROMOSOME_I assembly_tag Finished 8850783 8850786 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8850783 8850786 . + . Note "left end: F53B6" CHROMOSOME_I assembly_tag Finished 8850884 8850887 . - . Note "Right: T08G11" CHROMOSOME_I assembly_tag Clone 8858766 8858769 . - . Note "right end: T08G11" CHROMOSOME_I assembly_tag annotation 8873372 8873378 . + . Note "Going with largest number which\nis 7 A's." CHROMOSOME_I assembly_tag Clone 8883088 8883091 . + . Note "left end: F32H2" CHROMOSOME_I assembly_tag Finished 8883088 8883091 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 8883088 8883091 . + . Note "left end: F32H2" CHROMOSOME_I assembly_tag Finished 8883190 8883194 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8888200 8888203 . - . Note "right end: F53B6" CHROMOSOME_I assembly_tag Finished 8923856 8923860 . + . Note "Left: F36F2" CHROMOSOME_I assembly_tag Clone 8923963 8923966 . - . Note "right end: F32H2" CHROMOSOME_I assembly_tag Finished 8923963 8923966 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8923963 8923966 . - . Note "right end: F32H2" CHROMOSOME_I assembly_tag Clone 8946493 8946496 . + . Note "left end: C31H5" CHROMOSOME_I assembly_tag Clone 8946493 8946496 . + . Note "left end: C31H5" CHROMOSOME_I assembly_tag Finished 8946493 8946496 . + . Note "Left: C31H5" CHROMOSOME_I assembly_tag Finished 8946599 8946602 . - . Note "Right: F36F2" CHROMOSOME_I assembly_tag Clone 8956512 8956515 . + . Note "right end: F36F2" CHROMOSOME_I assembly_tag annotation 8973960 8973963 . + . Note "W06D4 (chimeric clone) diverges here.\n" CHROMOSOME_I assembly_tag Clone 8973960 8973963 . + . Note "left end: W06D4" CHROMOSOME_I assembly_tag Finished 8973960 8973963 . + . Note "Left: W06D4\n" CHROMOSOME_I assembly_tag Finished 8973960 8973963 . + . Note "Left: " CHROMOSOME_I assembly_tag comment 8973960 8973983 . - . Note "?diverges from C31H5" CHROMOSOME_I assembly_tag Finished 8974059 8974064 . - . Note "Right: C31H5" CHROMOSOME_I assembly_tag annotation 8976330 8976341 . - . Note "some m13s read 11 As, rather than 12\nhere." CHROMOSOME_I assembly_tag annotation 8979001 8979109 . + . Note "single m13 clone confirmed by \nrestriction digest with HindIII.\nbase accuracy not guarenteed." CHROMOSOME_I assembly_tag repeat 8979067 8979104 . - . Note "Repeats with contig ua17c6.s1t, offset 16274\n" CHROMOSOME_I assembly_tag repeat 8979125 8979155 . - . Note "Repeats with contig ua17c6.s1t, offset 16332\n" CHROMOSOME_I assembly_tag annotation 8979172 8979197 . + . Note "single m13 clone confirmed by\nrestriction digest with HindIII.\nbase accuracy not guarenteed." CHROMOSOME_I assembly_tag repeat 8981804 8981841 . - . Note "Repeats with contig ua17c6.s1t, offset 13537\n" CHROMOSOME_I assembly_tag repeat 8981862 8981892 . - . Note "Repeats with contig ua17c6.s1t, offset 13595\n" CHROMOSOME_I assembly_tag annotation 8986666 8986670 . + . Note "single M13 clone.\nbase accuracy not guarenteed." CHROMOSOME_I assembly_tag repeat 8989124 8989152 . - . Note "Repeats with contig ua17c6.s1t, offset 23913\n" CHROMOSOME_I assembly_tag repeat 8989124 8989157 . - . Note "Repeats with contig ua17c6.s1t, offset 23594\n" CHROMOSOME_I assembly_tag repeat 8989129 8989161 . - . Note "Repeats with contig ua17c6.s1t, offset 23913\n" CHROMOSOME_I assembly_tag repeat 8989443 8989471 . - . Note "Repeats with contig ua17c6.s1t, offset 23594\n" CHROMOSOME_I assembly_tag repeat 8989443 8989475 . - . Note "Repeats with contig ua17c6.s1t, offset 23599\n" CHROMOSOME_I assembly_tag oligo 8991452 8991474 . + . Note "serial#=W06D4.5\nsequence=GAGTTTCAAAAACCTGATAATAG\nflags=\n" CHROMOSOME_I assembly_tag Finished 8991495 8991498 . + . Note "Left: T06D10" CHROMOSOME_I assembly_tag cosmid 8991586 8991598 . + . Note "vector: " CHROMOSOME_I assembly_tag cosmid 8991590 8991592 . - . Note "vector: " CHROMOSOME_I assembly_tag cosmid 8991585 8991598 . - . Note "vector: " CHROMOSOME_I assembly_tag Finished 8991594 8991598 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 8991595 8991598 . - . Note "right end: W06D4 " CHROMOSOME_I assembly_tag annotation 9004700 9004778 . + . Note "First select a Feature -\n[ ] Unsure\n[x ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived\nfrom single sonicated pUC clone\n" CHROMOSOME_I assembly_tag annotation 9004779 9004820 . + . Note "First select a Feature -\n[ ] Unsure\n[x ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived\nfrom single sonicated pUC clone\n" CHROMOSOME_I assembly_tag annotation 9004820 9004832 . + . Note "First select a Feature -\n[ ] Unsure\n[x ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived\nfrom single sonicated pUC clone\n" CHROMOSOME_I assembly_tag annotation 9004832 9004833 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -sequence derived \nfrom single sonicated puc read\n" CHROMOSOME_I assembly_tag Finished 9012956 9012961 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9012956 9012961 . + . Note "left end: W10D5" CHROMOSOME_I assembly_tag Clone 9012956 9012961 . + . Note "left end: W10D5" CHROMOSOME_I assembly_tag Finished 9013056 9013059 . - . Note "Right: T06D10" CHROMOSOME_I assembly_tag Clone 9034580 9034583 . + . Note "left end: ZK858" CHROMOSOME_I assembly_tag Finished 9034580 9034583 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9034580 9034583 . + . Note "left end: ZK858" CHROMOSOME_I assembly_tag Finished 9034682 9034688 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 9050392 9050395 . - . Note "right end: W10D5" CHROMOSOME_I assembly_tag Finished 9072824 9072827 . + . Note "Left: H32K16" CHROMOSOME_I assembly_tag Clone 9072922 9072925 . + . Note "right end: ZK858" CHROMOSOME_I assembly_tag Clone 9072922 9072925 . - . Note "right end: ZK858" CHROMOSOME_I assembly_tag Finished 9072922 9072925 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 9076245 9076245 . + . Note "1 clone says A, 8 clones say G." CHROMOSOME_I assembly_tag Finished 9078768 9078768 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9078768 9078771 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 9078768 9078771 . - . Note "left end: F25H5" CHROMOSOME_I assembly_tag Finished 9078868 9078871 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9093803 9093999 . - . Note "single read (primer and term sequenced)\nonly covers this region which \nconstitutes the loop of an inverted \nrepeat" CHROMOSOME_I assembly_tag Finished 9117355 9117358 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9117456 9117459 . - . Note "left end: " CHROMOSOME_I assembly_tag Clone 9117456 9117459 . - . Note "right end: F25H5" CHROMOSOME_I assembly_tag Finished 9117459 9117459 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9129160 9129242 . + . Note "TA repeat. Number of TAs unconfirmed.\nSome M13 subclones have deleted." CHROMOSOME_I assembly_tag Finished 9153385 9153388 . + . Note "Left: VF36H2L" CHROMOSOME_I assembly_tag Finished 9153485 9153488 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9153485 9153488 . + . Note "right end: C45G3" CHROMOSOME_I assembly_tag Clone 9153485 9153488 . + . Note "right end: C45G3 clone right" CHROMOSOME_I assembly_tag Finished 9159435 9159435 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9159435 9159438 . + . Note "left end: F36H2" CHROMOSOME_I assembly_tag Clone 9159435 9159438 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9159535 9159538 . + . Note "Right: VF36H2L" CHROMOSOME_I assembly_tag annotation 9166532 9166554 . + . Note "probably run of 21 Gs, but dificult\nto be 100% sure as clear run only\nexists on single read" CHROMOSOME_I assembly_tag Finished 9190291 9190291 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9190291 9190294 . + . Note "left end: Left hand end of F14B4." CHROMOSOME_I assembly_tag Clone 9190291 9190294 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9190394 9190394 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9199819 9199822 . + . Note "right end: Right hand end of F36H2." CHROMOSOME_I assembly_tag Finished 9211379 9211379 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9211379 9211382 . + . Note "left end: Left hand end of F26H9." CHROMOSOME_I assembly_tag Clone 9211379 9211382 . + . Note "left end: Left hand end of F26H9." CHROMOSOME_I assembly_tag Finished 9211479 9211479 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9223413 9223416 . - . Note "right end: Right hand end of F14B4." CHROMOSOME_I assembly_tag annotation 9231303 9231380 . + . Note "?" CHROMOSOME_I assembly_tag annotation 9231318 9231318 . + . Note "base pair difference in pcr product" CHROMOSOME_I assembly_tag annotation 9231353 9231353 . + . Note "base pair difference in pcr product" CHROMOSOME_I assembly_tag Finished 9243531 9243534 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9243531 9243534 . - . Note "left end: C12C8 clone left" CHROMOSOME_I assembly_tag Clone 9243531 9243534 . - . Note "left end: " CHROMOSOME_I assembly_tag Finished 9243641 9243641 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9247518 9247521 . + . Note "right end: F26H9 clone right" CHROMOSOME_I assembly_tag Finished 9267101 9267101 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9267101 9267104 . + . Note "left end: M04C9 clone left" CHROMOSOME_I assembly_tag Clone 9267101 9267104 . + . Note "left end: M04C9 " CHROMOSOME_I assembly_tag Finished 9267201 9267204 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9270665 9271076 . + . Note "area covered by single read within\nlarge inverted repeat" CHROMOSOME_I assembly_tag annotation 9271649 9271649 . + . Note "single read has an A > G mutation" CHROMOSOME_I assembly_tag Clone 9285956 9285959 . + . Note "right end: C12C8" CHROMOSOME_I assembly_tag Finished 9298361 9298361 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9298361 9298364 . + . Note "left end: F16A11" CHROMOSOME_I assembly_tag Clone 9298361 9298364 . + . Note "left end: F16A11" CHROMOSOME_I assembly_tag Finished 9298463 9298463 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9306055 9306058 . + . Note "right end: M04C9" CHROMOSOME_I assembly_tag annotation 9307011 9307011 . + . Note "high background suggests that this\nbase may be a T, but all other Cs\nthrough this run have high T background\nso it is more likely that this base\nis infact a T" CHROMOSOME_I assembly_tag annotation 9307052 9307052 . + . Note "single read has point-mutation G > T" CHROMOSOME_I assembly_tag annotation 9308743 9308767 . + . Note "25 bases within arm of inverted repeat with only a single clone." CHROMOSOME_I assembly_tag annotation 9323460 9323460 . + . Note "single read has G deleted" CHROMOSOME_I assembly_tag Finished 9328884 9328884 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9328884 9328887 . + . Note "left end: C17E4" CHROMOSOME_I assembly_tag Clone 9328884 9328887 . - . Note "left end: C17E4" CHROMOSOME_I assembly_tag Finished 9328986 9328986 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9334538 9334541 . + . Note "right end: F16A11" CHROMOSOME_I assembly_tag annotation 9362899 9362901 . + . Note "this trace only had sequence ggtc" CHROMOSOME_I assembly_tag Finished 9366005 9366005 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9366005 9366008 . + . Note "left end: F46A9 clone left" CHROMOSOME_I assembly_tag Clone 9366005 9366008 . - . Note "left end: F46A9 clone left" CHROMOSOME_I assembly_tag Finished 9366108 9366108 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9370449 9370452 . + . Note "right end: last read of C17E4 in database. True\ncloning site for this cosmid is\nunknown" CHROMOSOME_I assembly_tag comment 9390048 9390070 . + . Note "long gel td22a2\ntd26b6\nif not work then oligo" CHROMOSOME_I assembly_tag annotation 9391535 9391535 . + . Note "This region is covered with 2 reads, an\nm13 subclone and a pcr product. Both \ntemplates disagree at this point with \nthe pcr product showing a TT > GT\nchange which has been edited \nto the sequence of the m13 clone." CHROMOSOME_I assembly_tag annotation 9391622 9391629 . + . Note "This 8 bp region within the loop of an inverted repeat is covered by a \nsingle template only" CHROMOSOME_I assembly_tag Finished 9395767 9395767 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9395767 9395770 . + . Note "left end: F30A10 clone left" CHROMOSOME_I assembly_tag Clone 9395767 9395770 . + . Note "left end: F30A10 clone left end" CHROMOSOME_I assembly_tag Finished 9395871 9395871 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9410765 9410768 . - . Note "right end: F46A9 clone right" CHROMOSOME_I assembly_tag annotation 9430027 9430027 . + . Note "area covered by cosmid pcrs. Walks in\nboth directions, but A is not visible \non the + strand (more than 1 pcr \nproduct), which is quite far\naway from oligo start point. 3 reads \n(2 different pcrs) all show clear A on\nnegative strand." CHROMOSOME_I assembly_tag annotation 9430236 9430236 . + . Note "single read mutated from c to a t\nhas been edited to the majority" CHROMOSOME_I assembly_tag Finished 9432833 9432833 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9432833 9432836 . + . Note "left end: C41G7" CHROMOSOME_I assembly_tag Clone 9432833 9432836 . + . Note "left end: C41G7 clone left" CHROMOSOME_I assembly_tag Clone 9432833 9432836 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9432936 9432936 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9433525 9433528 . + . Note "right end: " CHROMOSOME_I assembly_tag Clone 9433181 9433528 . - . Note "right end: F30A10 clone right" CHROMOSOME_I assembly_tag Finished 9461751 9461751 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9461751 9461754 . + . Note "left end: C36F7" CHROMOSOME_I assembly_tag Clone 9461751 9461754 . + . Note "left end: C36F7" CHROMOSOME_I assembly_tag Clone 9461751 9461754 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9461853 9461853 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9469519 9469521 . + . Note "single read shows 4Cs, but this looks\nas if it is a sequencing artifact.\nAll other reads (some terms and \nprimers) show 3 Cs)" CHROMOSOME_I assembly_tag annotation 9470478 9470481 . + . Note "reads have the spacing of 4 Gs, but no read clearly defines 4 G peaks.\nPrimer and terminator reads have\nbeen tried. Terminator data is\nTaqFS. We have been unable to confirm\nwith "old" Taq terms." CHROMOSOME_I assembly_tag Clone 9476190 9476193 . + . Note "right end: C41G7" CHROMOSOME_I assembly_tag annotation 9480287 9480290 . + . Note "Foreard primer reads on both strandsgive a clear GAGAAA sequence withno sign of any compression or expansionA single positive TaqFs terminator agreesHowever, all -ve terminators show a"compression" of the second G overthe As, and a following expansion.This is true with both Taq and TaqFs" CHROMOSOME_I assembly_tag annotation 9483197 9483197 . + . Note "single read has point mutation\nT > G" CHROMOSOME_I assembly_tag Finished 9500854 9500854 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9500958 9500961 . + . Note "right end: " CHROMOSOME_I assembly_tag Clone 9500958 9500961 . + . Note "right end: C36F7" CHROMOSOME_I assembly_tag Finished 9500961 9500961 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9502096 9502096 . + . Note "this clone has a point mutation with one of the t's being deleted it has been\nedited to the majority ie; tt." CHROMOSOME_I assembly_tag annotation 9504286 9504286 . + . Note "the traces for clones tk32c7.s1 and tk38f1.s1t have been called with three\ng's all other traces (terminators and primers) show 2 g's so they have been edited to the majority" CHROMOSOME_I assembly_tag Finished 9504471 9504471 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9504471 9504474 . + . Note "left end: K07A1" CHROMOSOME_I assembly_tag Clone 9504471 9504474 . - . Note "right end: K07A1" CHROMOSOME_I assembly_tag Finished 9504575 9504575 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9520978 9520981 . - . Note "right end: F42H11" CHROMOSOME_I assembly_tag Finished 9543457 9543460 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9543553 9543556 . + . Note "right end: K07A1" CHROMOSOME_I assembly_tag Clone 9543553 9543556 . + . Note "right end: K07A1" CHROMOSOME_I assembly_tag Finished 9543556 9543556 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9544056 9544059 . + . Note "left end: T05F1" CHROMOSOME_I assembly_tag Clone 9544056 9544059 . - . Note "left end: T05F1" CHROMOSOME_I assembly_tag Finished 9544056 9544059 . - . Note "Left: " CHROMOSOME_I assembly_tag Finished 9544152 9544155 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9557280 9557283 . - . Note "left end: C03D6" CHROMOSOME_I assembly_tag annotation 9560735 9561623 . - . Note "21 copies of 44bp tandem repeat. The restriction digest suggests\nthere are 19 copies missing from this assembly." CHROMOSOME_I assembly_tag Finished 9580711 9580714 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9580811 9580814 . + . Note "right end: T05F1" CHROMOSOME_I assembly_tag Finished 9580811 9580814 . - . Note "Right: T05F1" CHROMOSOME_I assembly_tag Clone 9580811 9580814 . - . Note "right end: T05F1" CHROMOSOME_I assembly_tag Finished 9596120 9596123 . + . Note "Left: C04F12" CHROMOSOME_I assembly_tag Finished 9596216 9596219 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9596216 9596219 . + . Note "right end: C03D6" CHROMOSOME_I assembly_tag Clone 9596216 9596219 . - . Note "right end: C03D6" CHROMOSOME_I assembly_tag Clone 9633257 9633260 . - . Note "left end: C16C2" CHROMOSOME_I assembly_tag Finished 9636783 9636786 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9636883 9636886 . + . Note "right end: C04F12" CHROMOSOME_I assembly_tag Finished 9636883 9636886 . + . Note "Right: C04F12" CHROMOSOME_I assembly_tag Clone 9636883 9636886 . - . Note "right end: C04F12 clone left end" CHROMOSOME_I assembly_tag Finished 9658595 9658595 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9658595 9658598 . + . Note "left end: K02A11" CHROMOSOME_I assembly_tag Clone 9658595 9658598 . - . Note "left end: K02A11 clone left" CHROMOSOME_I assembly_tag Finished 9658696 9658699 . + . Note "Right: " CHROMOSOME_I assembly_tag Finished 9678745 9678745 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9678745 9678748 . + . Note "left end: F26E4" CHROMOSOME_I assembly_tag Clone 9678745 9678748 . + . Note "left end: F26E4" CHROMOSOME_I assembly_tag Finished 9678844 9678844 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9682177 9682179 . + . Note "Point mutation ATTT > AGTT" CHROMOSOME_I assembly_tag Clone 9692324 9692327 . + . Note "right end: K02A11" CHROMOSOME_I assembly_tag annotation 9696612 9696614 . + . Note "single term on -ve strand looks\nto have 4 Cs but other data, \nincluding primer and terminator \nreads on both strands show 3 clear\nCs only, so we assume that one read\nis showing some gel/sequencing artifact" CHROMOSOME_I assembly_tag Clone 9705957 9705960 . + . Note "left end: F35C12" CHROMOSOME_I assembly_tag annotation 9717371 9717379 . + . Note "single m13 read over these 9 bases,\nare confirmed by pcr, but confirmatory\ndata is weak" CHROMOSOME_I assembly_tag Finished 9719041 9719041 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9719141 9719144 . + . Note "right end: F26E4" CHROMOSOME_I assembly_tag Clone 9719141 9719144 . - . Note "right end: F26E4" CHROMOSOME_I assembly_tag Finished 9719144 9719144 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9727843 9727857 . + . Note "single read has 16 Cs at this point" CHROMOSOME_I assembly_tag annotation 9729320 9729320 . + . Note "single read shows GG, but all others\n(with primer and terminator chemistry)\nshow a clear single G." CHROMOSOME_I assembly_tag annotation 9730685 9730840 . - . Note "unknown/unstable run of CTs. \nSize is approximately correct within \nthe accuracy of restriction digests" CHROMOSOME_I assembly_tag annotation 9732453 9732453 . + . Note "single read shows 2Gs here, but on\nresequencing with terminators shows\na clear single G, so we assume the\nGG is a gel artifact" CHROMOSOME_I assembly_tag annotation 9734453 9734453 . + . Note "single read shows point mutation T > A" CHROMOSOME_I assembly_tag annotation 9735544 9735676 . + . Note "part of arm of inverted repeat\nhas a single read only" CHROMOSOME_I assembly_tag Finished 9739296 9739299 . + . Note "Left: Y67A6A" CHROMOSOME_I assembly_tag Clone 9739392 9739395 . + . Note "right end: F35C12" CHROMOSOME_I assembly_tag Clone 9739392 9739395 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 9739395 9739395 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9740714 9743615 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 15 copies of a 200 bp repeat typical sequence:TTATATACAAAATTAATAGATTTTCCAAACTTTGAAAATTAATTTCTGGCTTCAAACTAACTTTTTTAGAAATTCCCGTAGCCATTTTGTAGCAAATTTTATGTTCTTTCAGAATTTGAAAACAGAATTTTAAAAAATTTCGAAACCGCCAAGTTCAAGCAGAAAAAGTGAATTTTCAGTCATACCTTGTAGACCACAATSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9743718 9744227 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 16 copies of a 30 bp repeat, typical sequence:TCACCACGATGGGTCTAACCACGATGGGTCSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9744431 9745204 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 6 copies of a 121 bp repeat typical sequence:CCCGACCACGTCCCACCACTAACCTCAAACCAATATCCCTTCAAAAGACGAAAAGTCAATTTTTCCCAAACTACAGTAATCCTACAGTACTCCTACAGTACCTCTACAGTACTACTACAGTACSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9745321 9746848 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region of tandem repeat, consisting of 23 copies of a 66 bp repeat, typical sequence:CCCGACCACATCCCACCACTAACCTCAAACCAATATCTCTTCAAAAGGCGAAAAGTCAATTTTTCCTAAACTACAGTAATCCTACAGTACTCCTACAGTACCACTACAGTACTACTACAGTACSome base pair differences have been edited. A restriction digest was not available to confirm the assembly." CHROMOSOME_I assembly_tag annotation 9748808 9748808 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nOne clone has deleted this "G", 6 clones\nhave this "G" present." CHROMOSOME_I assembly_tag annotation 9761916 9761916 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nOne clone has deleted this "C", 5 clones \nhave this "C" present." CHROMOSOME_I assembly_tag Clone 9766381 9766384 . + . Note "left end: K10C3" CHROMOSOME_I assembly_tag Clone 9766381 9766384 . + . Note "left end: k10C3" CHROMOSOME_I assembly_tag Finished 9766381 9766384 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 9766477 9766480 . + . Note "Right: Y67A6A" CHROMOSOME_I assembly_tag Clone 9800059 9800062 . + . Note "left end: T23H4" CHROMOSOME_I assembly_tag Finished 9800059 9800062 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9800059 9800062 . + . Note "left end: T23H4" CHROMOSOME_I assembly_tag Finished 9800159 9800162 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 9812273 9812276 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9812273 9812276 . - . Note "left end: F52F12" CHROMOSOME_I assembly_tag Clone 9812273 9812276 . - . Note "left end: F52F12" CHROMOSOME_I assembly_tag Finished 9812373 9812376 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9835702 9835705 . + . Note "right end: T23H4" CHROMOSOME_I assembly_tag Finished 9855317 9855319 . + . Note "Left: Y106G6A" CHROMOSOME_I assembly_tag Clone 9855417 9855420 . + . Note "right end: F52F12" CHROMOSOME_I assembly_tag Finished 9855417 9855420 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9855417 9855420 . + . Note "right end: F52F12" CHROMOSOME_I assembly_tag annotation 9859728 9860092 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -light shotgun but single clone is sequenced as a terminator and sequence isunambiguous" CHROMOSOME_I assembly_tag annotation 9860149 9860241 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone sequenced with ABD Big Dye Terminators. Sequence is unambiguous." CHROMOSOME_I assembly_tag annotation 9860722 9861006 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone sequenced with ABD Big DyeTerminators. Sequence is unambiguous." CHROMOSOME_I assembly_tag Clone 9867230 9867233 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9867230 9867233 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 9867329 9867332 . + . Note "Right: Y106G6A" CHROMOSOME_I assembly_tag Finished 9886740 9886743 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9886740 9886743 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 9886740 9886743 . + . Note "left end: T23D8" CHROMOSOME_I assembly_tag Finished 9886840 9886843 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9899485 9899488 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 9921212 9921215 . + . Note "Left: Y106G6B" CHROMOSOME_I assembly_tag Clone 9921312 9921315 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 9921312 9921315 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 9923202 9923205 . + . Note "left end: C03C11" CHROMOSOME_I assembly_tag Clone 9923202 9923205 . + . Note "left end: C03C11" CHROMOSOME_I assembly_tag Finished 9923202 9923205 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 9923302 9923305 . + . Note "Right: Y106G6B" CHROMOSOME_I assembly_tag Clone 9942268 9942270 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 9942268 9942271 . + . Note "left end: F10G8" CHROMOSOME_I assembly_tag Finished 9942268 9942271 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9942268 9942271 . + . Note "left end: " CHROMOSOME_I assembly_tag Finished 9942368 9942371 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 9962511 9962514 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 9977284 9977287 . + . Note "Left: Y106G6C" CHROMOSOME_I assembly_tag Clone 9977385 9977388 . + . Note "right end: F10G8" CHROMOSOME_I assembly_tag Clone 9977385 9977388 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 9977385 9977388 . + . Note "Right: " CHROMOSOME_I assembly_tag annotation 9980243 9980316 . + . Note "single clone - base calling confirmed by 2 different sequencing chemistries" CHROMOSOME_I assembly_tag annotation 9987941 9988052 . + . Note "single clone over this region, in \ninverted repeat region" CHROMOSOME_I assembly_tag Clone 9990579 9990582 . + . Note "left end: B0379" CHROMOSOME_I assembly_tag Finished 9990579 9990582 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 9990579 9990582 . + . Note "left end: B0379\nNo overlap on either side." CHROMOSOME_I assembly_tag Finished 9990679 9990682 . + . Note "Right: Y106G6C" CHROMOSOME_I assembly_tag annotation 10010140 10010158 . + . Note "Number of Gs may not be accurate." CHROMOSOME_I assembly_tag annotation 10026107 10026226 . + . Note "Number of AGs varies in different\nM13 clones, so edited number may\nnot be accurate." CHROMOSOME_I assembly_tag Finished 10030814 10030817 . + . Note "Left: Y106G6D" CHROMOSOME_I assembly_tag Clone 10030914 10030917 . + . Note "right end: B0379" CHROMOSOME_I assembly_tag Finished 10030914 10030917 . + . Note "Right: " CHROMOSOME_I assembly_tag Clone 10030914 10030917 . + . Note "right end: B0379\nno overlap on either side" CHROMOSOME_I assembly_tag annotation 10049974 10050155 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsingle sonicated clone in inverted \nrepeat region\n" CHROMOSOME_I assembly_tag Clone 10066267 10066270 . + . Note "left end: F16C3" CHROMOSOME_I assembly_tag Clone 10066267 10066270 . + . Note "left end: F16C3\n" CHROMOSOME_I assembly_tag Finished 10066267 10066270 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 10066367 10066370 . + . Note "Right: Y106G6D" CHROMOSOME_I assembly_tag Finished 10083091 10083094 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 10083091 10083094 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 10083091 10083094 . + . Note "left end: C25A1" CHROMOSOME_I assembly_tag Finished 10083191 10083194 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 10106342 10106345 . + . Note "right end: " CHROMOSOME_I assembly_tag Finished 10123584 10123587 . + . Note "Left: Y106G6E" CHROMOSOME_I assembly_tag Clone 10123684 10123687 . + . Note "right end: " CHROMOSOME_I assembly_tag Clone 10123684 10123687 . + . Note "right end: C25A1" CHROMOSOME_I assembly_tag Finished 10123684 10123687 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 10128011 10143077 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat (typical repeat element ATTGTCAACTGAATAGGTTGATTTGTGTTTTCTTTAAAATTTTTAAAAATTTGGTAAAAGAAAACC). Size unknown." CHROMOSOME_I assembly_tag annotation 10149301 10149398 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 10153529 10153695 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 10157516 10157950 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsingle sonicated clone" CHROMOSOME_I assembly_tag Clone 10161182 10161187 . + . Note "left end: ZC247" CHROMOSOME_I assembly_tag Finished 10161284 10161287 . + . Note "Right: Y106G6E" CHROMOSOME_I assembly_tag Finished 10195399 10195402 . + . Note "Left: Y106G6F" CHROMOSOME_I assembly_tag Clone 10195497 10195502 . + . Note "right end: ZC247" CHROMOSOME_I assembly_tag annotation 10195575 10195583 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -tandem repeat region which includes ZC247,T02F9 and T20F10. Not sized." CHROMOSOME_I assembly_tag Clone 10195917 10195920 . + . Note "left end: T20F10" CHROMOSOME_I assembly_tag Finished 10195917 10195920 . + . Note "Left: T20F10" CHROMOSOME_I assembly_tag Clone 10195917 10195920 . + . Note "left end: T20F10" CHROMOSOME_I assembly_tag Finished 10196018 10196021 . + . Note "Right: Y106G6F" CHROMOSOME_I assembly_tag annotation 10195917 10200936 . - . Note "231 base tandem repeat. Digest with \nBsp1286 and HindIII shows 19/20\ncopies are missing from this assembly" CHROMOSOME_I assembly_tag Finished 10232921 10232924 . + . Note "Left: Y106G6G" CHROMOSOME_I assembly_tag Clone 10233021 10233024 . + . Note "right end: T20F10" CHROMOSOME_I assembly_tag Finished 10233021 10233024 . - . Note "Right: T20F10" CHROMOSOME_I assembly_tag Clone 10233021 10233024 . - . Note "right end: T20F10" CHROMOSOME_I assembly_tag annotation 10252511 10253058 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 10253059 10253064 . + . Note "left end: ZC434" CHROMOSOME_I assembly_tag Finished 10253059 10253064 . + . Note "Left: ZC434" CHROMOSOME_I assembly_tag Clone 10253059 10253064 . + . Note "left end: START OF ZC434" CHROMOSOME_I assembly_tag Finished 10253161 10253164 . + . Note "Right: Y106G6G" CHROMOSOME_I assembly_tag Clone 10284486 10284489 . + . Note "left end: F45H11 beginning" CHROMOSOME_I assembly_tag Finished 10284486 10284489 . + . Note "Left: F45H11" CHROMOSOME_I assembly_tag Clone 10284486 10284489 . + . Note "left end: START OF F45H11" CHROMOSOME_I assembly_tag Finished 10284586 10284589 . + . Note "Right: ZC434" CHROMOSOME_I assembly_tag Clone 10289655 10289660 . + . Note "right end: ZC434" CHROMOSOME_I assembly_tag Clone 10314656 10314659 . + . Note "left end: F25D7" CHROMOSOME_I assembly_tag Finished 10314656 10314659 . + . Note "Left: F25D7" CHROMOSOME_I assembly_tag Clone 10314656 10314659 . + . Note "left end: F25D7" CHROMOSOME_I assembly_tag Finished 10314756 10314759 . + . Note "Right: F45H11" CHROMOSOME_I assembly_tag Clone 10325017 10325020 . + . Note "right end: F45H11" CHROMOSOME_I assembly_tag Finished 10351042 10351045 . + . Note "Left: Y106G6H" CHROMOSOME_I assembly_tag Clone 10351142 10351145 . + . Note "right end: F25D7" CHROMOSOME_I assembly_tag Clone 10351142 10351145 . + . Note "right end: F25D7" CHROMOSOME_I assembly_tag Finished 10351142 10351145 . + . Note "Right: F25D7" CHROMOSOME_I assembly_tag Clone 10386650 10386653 . - . Note "right end: T01A9" CHROMOSOME_I assembly_tag annotation 10386682 10386688 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -forced join in tandem repeat region of unspecified size. Typical repeat elementGGGTAGCTCCTGATGATCTGATCCTTCAGCTTCGAAGGATCACAA (45-mer)" CHROMOSOME_I assembly_tag Finished 10399551 10399554 . + . Note "Left: F37D6" CHROMOSOME_I assembly_tag Clone 10399551 10399554 . + . Note "left end: F37D6" CHROMOSOME_I assembly_tag Clone 10399551 10399554 . + . Note "left end: F37D6" CHROMOSOME_I assembly_tag Finished 10399651 10399654 . + . Note "Right: Y106G6H" CHROMOSOME_I assembly_tag annotation 10403288 10403290 . + . Note "sa53g5 has only 3 A's" CHROMOSOME_I assembly_tag annotation 10425747 10425749 . + . Note "sa48b11 has only 11 T's; the other reads have 12" CHROMOSOME_I assembly_tag Clone 10428810 10428813 . + . Note "left end: Start of F59C6" CHROMOSOME_I assembly_tag Finished 10428810 10428813 . + . Note "Left: F59C6" CHROMOSOME_I assembly_tag Clone 10428810 10428813 . + . Note "left end: F59C6" CHROMOSOME_I assembly_tag Finished 10428910 10428913 . + . Note "Right: F37D6" CHROMOSOME_I assembly_tag Clone 10438716 10438719 . + . Note "right end: END OF F37D6" CHROMOSOME_I assembly_tag Finished 10457791 10457794 . + . Note "Left: F25H2" CHROMOSOME_I assembly_tag Clone 10457791 10457794 . + . Note "left end: START OF F25H2" CHROMOSOME_I assembly_tag Clone 10457791 10457794 . - . Note "left end: START OF F25H2" CHROMOSOME_I assembly_tag Finished 10457891 10457894 . + . Note "Right: F59C6" CHROMOSOME_I assembly_tag Clone 10468490 10468493 . - . Note "right end: END OF F59C6" CHROMOSOME_I assembly_tag Finished 10500053 10500056 . + . Note "Left: F29C6" CHROMOSOME_I assembly_tag Clone 10500153 10500156 . + . Note "right end: END OF F25H2" CHROMOSOME_I assembly_tag Finished 10500153 10500156 . + . Note "Right: F25H2" CHROMOSOME_I assembly_tag Finished 10500153 10500156 . + . Note "Right: F25H2" CHROMOSOME_I assembly_tag Clone 10500153 10500156 . - . Note "right end: END OF F25H2" CHROMOSOME_I assembly_tag Finished 10503449 10503452 . + . Note "Left: T22A3" CHROMOSOME_I assembly_tag Clone 10503449 10503452 . + . Note "left end: T22A3" CHROMOSOME_I assembly_tag Clone 10503449 10503452 . - . Note "left end: START OF T22A3" CHROMOSOME_I assembly_tag Finished 10503549 10503552 . - . Note "Right: F29C6" CHROMOSOME_I assembly_tag annotation 10517997 10517997 . + . Note "uncertain" CHROMOSOME_I assembly_tag Clone 10523125 10523128 . + . Note "right end: F29C6" CHROMOSOME_I assembly_tag annotation 10528258 10528263 . + . Note "This join has been made in the tandem \nrepeat region (bases 23470 - 25210)\nand is not confirmed by any other\nreads. However, the size of the cosmid has been confirmed by restriction\ndigest." CHROMOSOME_I assembly_tag annotation 10534802 10534802 . + . Note "uncertain" CHROMOSOME_I assembly_tag Finished 10539396 10539399 . + . Note "Left: H10E24" CHROMOSOME_I assembly_tag Finished 10539496 10539499 . + . Note "Right: T22A3" CHROMOSOME_I assembly_tag Clone 10539496 10539499 . + . Note "right end: T22A3" CHROMOSOME_I assembly_tag Clone 10539496 10539499 . - . Note "right end: T22A3\n" CHROMOSOME_I assembly_tag annotation 10541683 10541716 . + . Note "This region is only covered with a single clone ss11a3. The assembly of this region has been confirmed with a restriction digest." CHROMOSOME_I assembly_tag CpG 10542001 10542006 . - . Note "Island: BAMHI\nG'GATCC 1\n" CHROMOSOME_I assembly_tag Clone 10543160 10543163 . + . Note "left end: C43H8\n" CHROMOSOME_I assembly_tag Finished 10543260 10543263 . + . Note "Right: H10E24" CHROMOSOME_I assembly_tag Finished 10862641 10862646 . + . Note "Left: Y52B11A" CHROMOSOME_I assembly_tag Clone 10862641 10862646 . + . Note "left end: Y52B11" CHROMOSOME_I assembly_tag annotation 10880189 10880207 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nY52B11 reads 19 Gs here,Y95D11 reads 18." CHROMOSOME_I assembly_tag Clone 10961940 10961945 . + . Note "left end: Y53H1" CHROMOSOME_I assembly_tag Clone 10969490 10969493 . + . Note "left end: W02B9" CHROMOSOME_I assembly_tag Clone 10969490 10969493 . + . Note "left end: W02B9" CHROMOSOME_I assembly_tag Finished 10969490 10969493 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 10969585 10969589 . - . Note "Right: Y52B11A" CHROMOSOME_I assembly_tag Finished 11001605 11001608 . + . Note "Left: Y52B11B" CHROMOSOME_I assembly_tag Finished 11001699 11001704 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11001699 11001704 . - . Note "right end: W02B9" CHROMOSOME_I assembly_tag Clone 11001699 11001704 . - . Note "right end: W02B9" CHROMOSOME_I assembly_tag Clone 11026879 11026882 . + . Note "left end: ZK39" CHROMOSOME_I assembly_tag Finished 11026879 11026882 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11026879 11026882 . + . Note "left end: ZK39" CHROMOSOME_I assembly_tag Finished 11026977 11026981 . - . Note "Right: Y52B11B" CHROMOSOME_I assembly_tag Finished 11062872 11062879 . + . Note "Left: Y52B11C" CHROMOSOME_I assembly_tag Finished 11062968 11062971 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11062968 11062971 . - . Note "right end: ZK39" CHROMOSOME_I assembly_tag Clone 11062968 11062971 . - . Note "right end: ZK39" CHROMOSOME_I assembly_tag Finished 11070756 11070759 . + . Note "Left: F28D9" CHROMOSOME_I assembly_tag Clone 11070756 11070759 . + . Note "left end: F28D9" CHROMOSOME_I assembly_tag Clone 11070756 11070759 . + . Note "left end: F28D9" CHROMOSOME_I assembly_tag Finished 11070852 11070859 . - . Note "Right: Y52B11C" CHROMOSOME_I assembly_tag Clone 11086405 11086408 . + . Note "left end: W06H12" CHROMOSOME_I assembly_tag Finished 11104351 11104356 . + . Note "Left: W06H12" CHROMOSOME_I assembly_tag Finished 11104458 11104461 . - . Note "Right: F28D9" CHROMOSOME_I assembly_tag Clone 11104458 11104461 . - . Note "right end: F28D9" CHROMOSOME_I assembly_tag Clone 11104458 11104461 . - . Note "right end: F28D9" CHROMOSOME_I assembly_tag annotation 11104856 11104856 . + . Note "Y53H1 reads G, W06H12 reads A" CHROMOSOME_I assembly_tag Finished 11108241 11108244 . + . Note "Left: Y53H1A" CHROMOSOME_I assembly_tag Clone 11108339 11108342 . - . Note "right end: W06H12" CHROMOSOME_I assembly_tag Clone 11108339 11108342 . - . Note "right end: W06H12" CHROMOSOME_I assembly_tag Finished 11108339 11108342 . - . Note "Right: W06H12" CHROMOSOME_I assembly_tag annotation 11124407 11124438 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_I assembly_tag annotation 11134386 11134415 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat" CHROMOSOME_I assembly_tag Finished 11136100 11136103 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11136100 11136103 . + . Note "left end: F46A8" CHROMOSOME_I assembly_tag Clone 11136100 11136103 . + . Note "left end: F46A8" CHROMOSOME_I assembly_tag Finished 11136200 11136203 . - . Note "Right: Y53H1A" CHROMOSOME_I assembly_tag Clone 11153007 11153010 . + . Note "left end: F36D1" CHROMOSOME_I assembly_tag Finished 11153007 11153010 . + . Note "Left: F36D1" CHROMOSOME_I assembly_tag Clone 11153007 11153010 . + . Note "left end: F36D1" CHROMOSOME_I assembly_tag cosmid 11153007 11153010 . + . Note "vector: CAF:END=Left,Right::lorist6" CHROMOSOME_I assembly_tag Finished 11153107 11153114 . - . Note "Right: " CHROMOSOME_I assembly_tag oligo 11156979 11156995 . - . Note "serial#=\ntemplate=\nsequence=CGGTTTGATACTTGGTG\nflags=4.24" CHROMOSOME_I assembly_tag comment 11157006 11157020 . + . Note "diverges" CHROMOSOME_I assembly_tag oligo 11157113 11157129 . + . Note "serial#=\ntemplate=ua47h13\nsequence=GACTTGTGTGTGGAATG\nflags=5.24" CHROMOSOME_I assembly_tag oligo 11157411 11157427 . + . Note "serial#=\ntemplate=ua47h13\nsequence=AAAAACGGGGGGTACTG\nflags=6.24" CHROMOSOME_I assembly_tag oligo 11157717 11157734 . + . Note "serial#=\ntemplate=ua48a13\nsequence=GGTTGGTGGAAAAATTAC\nflags=8.24" CHROMOSOME_I assembly_tag comment 11157799 11157811 . - . Note "poor sequence data. poss diverges" CHROMOSOME_I assembly_tag comment 11157838 11157843 . - . Note "diverges" CHROMOSOME_I assembly_tag oligo 11157890 11157906 . - . Note "serial#=\ntemplate=ua48a13\nsequence=AAAGAAGGGGGTGAGAG\nflags=7.24" CHROMOSOME_I assembly_tag oligo 11158052 11158069 . + . Note "serial#=\ntemplate=ut63d6\nsequence=ATAAAAAGCAATCGGAGG\nflags=3.24" CHROMOSOME_I assembly_tag oligo 11158065 11158065 . + . CHROMOSOME_I assembly_tag oligo 11166171 11166187 . + . Note "2.24" CHROMOSOME_I assembly_tag oligo 11166336 11166353 . + . Note "1.24" CHROMOSOME_I assembly_tag Clone 11173555 11173558 . - . Note "right end: F46A8" CHROMOSOME_I assembly_tag oligo 11174005 11174022 . + . Note "serial#=\ntemplate=ut54f4\nsequence=TGAGAACACCTATTTTCC\nflags=10.24" CHROMOSOME_I assembly_tag oligo 11174846 11174863 . - . Note "serial#=\ntemplate=ua51h9\nsequence=GGCATGTAGAAATGTAGG\nflags=9.24" CHROMOSOME_I assembly_tag comment 11175043 11175062 . - . Note "not from same clone as ua51h9.s1ta" CHROMOSOME_I assembly_tag comment 11175202 11175218 . - . Note "forced join" CHROMOSOME_I assembly_tag oligo 11175347 11175366 . - . Note "serial#=\ntemplate=ua52e1\nsequence=GTATTTGCTACGAGTTTTTG\nflags=11.24" CHROMOSOME_I assembly_tag Finished 11193271 11193274 . + . Note "Left: Y53H1B" CHROMOSOME_I assembly_tag Finished 11193372 11193375 . - . Note "Right: F36D1" CHROMOSOME_I assembly_tag Clone 11193372 11193375 . - . Note "right end: F36D1" CHROMOSOME_I assembly_tag Clone 11193372 11193375 . - . Note "right end: F36D1" CHROMOSOME_I assembly_tag Finished 11206143 11206146 . + . Note "Left: H25P06" CHROMOSOME_I assembly_tag Clone 11206143 11206146 . + . Note "left end: H25P06" CHROMOSOME_I assembly_tag Clone 11206143 11206146 . + . Note "left end: H25P06" CHROMOSOME_I assembly_tag Finished 11206243 11206246 . - . Note "Right: Y53H1B" CHROMOSOME_I assembly_tag Clone 11227241 11227244 . + . Note "left end: M04D5" CHROMOSOME_I assembly_tag Clone 11227241 11227244 . + . Note "left end: M04D5" CHROMOSOME_I assembly_tag Finished 11227241 11227244 . + . Note "Left: M04D5" CHROMOSOME_I assembly_tag Finished 11227337 11227340 . - . Note "Right: H25P06" CHROMOSOME_I assembly_tag Clone 11243382 11243385 . - . Note "right end: H25P06" CHROMOSOME_I assembly_tag Clone 11245758 11245761 . + . Note "left end: F56G4" CHROMOSOME_I assembly_tag Finished 11245758 11245761 . + . Note "Left: F56G4" CHROMOSOME_I assembly_tag Clone 11245758 11245761 . + . Note "left end: F56G4" CHROMOSOME_I assembly_tag Clone 11265131 11265134 . - . Note "right end: M04D5" CHROMOSOME_I assembly_tag Finished 11283718 11283721 . + . Note "Left: Y53H1C " CHROMOSOME_I assembly_tag Finished 11283816 11283819 . - . Note "Right: F56G4" CHROMOSOME_I assembly_tag Clone 11283816 11283819 . - . Note "right end: F56G4" CHROMOSOME_I assembly_tag Clone 11283816 11283819 . - . Note "right end: F56G4" CHROMOSOME_I assembly_tag annotation 11284770 11286746 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[x] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\ntandem repeat of unknown length" CHROMOSOME_I assembly_tag Clone 11320617 11320620 . + . Note "left end: C27C7" CHROMOSOME_I assembly_tag Finished 11320619 11320622 . + . Note "Left: C27C7" CHROMOSOME_I assembly_tag Clone 11320619 11320622 . - . Note "left end: C27C7" CHROMOSOME_I assembly_tag Finished 11320718 11320721 . - . Note "Right: Y53H1C" CHROMOSOME_I assembly_tag Finished 11342736 11342739 . + . Note "Left: ZK1025" CHROMOSOME_I assembly_tag Clone 11342736 11342739 . + . Note "left end: ZK1025" CHROMOSOME_I assembly_tag Clone 11342736 11342739 . + . Note "left end: ZK1025" CHROMOSOME_I assembly_tag Finished 11342832 11342835 . - . Note "Right: C27C7" CHROMOSOME_I assembly_tag Clone 11360397 11360400 . - . Note "right end: C27C7" CHROMOSOME_I assembly_tag Clone 11361199 11361202 . + . Note "left end: K08C9" CHROMOSOME_I assembly_tag annotation 11361229 11362252 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -This 1024 base pair section is deleted in the overlapping clone K08C9. Confirmed by restriction digest." CHROMOSOME_I assembly_tag Finished 11383223 11383227 . + . Note "Left: K08C9" CHROMOSOME_I assembly_tag annotation 11383228 11399575 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -K08C9 has a 1024 base pair deletion 30 base pairs from its clone left end. Confirmed by restriction digest." CHROMOSOME_I assembly_tag Finished 11383321 11383324 . - . Note "Right: ZK1025" CHROMOSOME_I assembly_tag Clone 11383321 11383324 . - . Note "right end: ZK1025" CHROMOSOME_I assembly_tag Clone 11383321 11383324 . - . Note "right end: ZK1025" CHROMOSOME_I assembly_tag Finished 11399468 11399471 . + . Note "Left: F32B4" CHROMOSOME_I assembly_tag Clone 11399468 11399471 . + . Note "left end: F32B4" CHROMOSOME_I assembly_tag Clone 11399468 11399471 . + . Note "left end: F32B4\n" CHROMOSOME_I assembly_tag Finished 11399576 11399580 . - . Note "Right: K08C9" CHROMOSOME_I assembly_tag Clone 11403687 11403690 . - . Note "right end: K08C9" CHROMOSOME_I assembly_tag annotation 11427222 11427242 . + . Note "21 C's possible less, gone with largest\nnumber\n" CHROMOSOME_I assembly_tag Clone 11440573 11440576 . + . Note "left end: F15D3\n" CHROMOSOME_I assembly_tag Clone 11440573 11440576 . + . Note "left end: F15D3 LHE" CHROMOSOME_I assembly_tag Finished 11440573 11440576 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11440676 11440679 . - . Note "Right: F32B4" CHROMOSOME_I assembly_tag Clone 11446976 11446979 . - . Note "right end: F32B4" CHROMOSOME_I assembly_tag Finished 11483229 11483232 . + . Note "Left: C17D12" CHROMOSOME_I assembly_tag Clone 11483229 11483232 . + . Note "left end: C17D12" CHROMOSOME_I assembly_tag Clone 11483229 11483232 . - . Note "right end: F15D3\n" CHROMOSOME_I assembly_tag Finished 11483229 11483232 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11483229 11483232 . - . Note "right end: F15D3\nOverlaps at GATC site" CHROMOSOME_I assembly_tag comment 11488780 11488800 . - . Note "?This shouldn't go here but it fits." CHROMOSOME_I assembly_tag comment 11503317 11503326 . - . Note "?do long term off this read" CHROMOSOME_I assembly_tag comment 11503684 11503689 . + . Note "?Named wrong." CHROMOSOME_I assembly_tag Warning 11504460 11504461 . - . Note ""POSSIBLY VECTOR: puc18 299 248 2686"" CHROMOSOME_I assembly_tag Warning 11505664 11505664 . + . Note ""POSSIBLY VECTOR: puc18 2623 2578 2686"" CHROMOSOME_I assembly_tag annotation 11506281 11506308 . + . Note "[ ] Tandem repeat \n[x] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_I assembly_tag annotation 11506672 11506672 . + . Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[x] Other \nComment \nDivergence with YAC data (T)\n" CHROMOSOME_I assembly_tag Finished 11524674 11524686 . + . Note "Left: Y47H9A " CHROMOSOME_I assembly_tag Finished 11524777 11524780 . - . Note "Right: C17D12" CHROMOSOME_I assembly_tag Clone 11524777 11524780 . - . Note "right end: C17D12" CHROMOSOME_I assembly_tag Clone 11524777 11524780 . - . Note "right end: C17D12" CHROMOSOME_I assembly_tag Finished 11529674 11529679 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11529674 11529679 . + . Note "left end: W04G5" CHROMOSOME_I assembly_tag Clone 11529674 11529679 . + . Note "left end: W04G5" CHROMOSOME_I assembly_tag Finished 11529769 11529787 . - . Note "Right: Y47H9A " CHROMOSOME_I assembly_tag Finished 11554231 11554234 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11554231 11554234 . + . Note "left end: " CHROMOSOME_I assembly_tag Clone 11554231 11554234 . + . Note "left end: F11A6" CHROMOSOME_I assembly_tag Finished 11554320 11554325 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 11557851 11557859 . + . Note "The overlapping cosmid W04G5 appears to\nhave deleted a copy of the repeating\noctomer ATGTAGGC" CHROMOSOME_I assembly_tag annotation 11558172 11558175 . + . Note "The overlapping cosmid W04G5 appears to\nhave deleted bases from this tandem\nrepeat region. " CHROMOSOME_I assembly_tag Clone 11561376 11561379 . - . Note "right end: W04G5" CHROMOSOME_I assembly_tag Clone 11588739 11588742 . + . Note "left end: T22H2" CHROMOSOME_I assembly_tag Finished 11588739 11588742 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11588954 11588957 . - . Note "right end: " CHROMOSOME_I assembly_tag Finished 11588954 11588957 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11606971 11606974 . + . Note "left end: F35E2" CHROMOSOME_I assembly_tag Clone 11606971 11606974 . + . Note "left end: F35E2" CHROMOSOME_I assembly_tag Finished 11606971 11606974 . + . Note "Left: F35E2" CHROMOSOME_I assembly_tag Finished 11607082 11607085 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 11613244 11613253 . + . Note "Clone deleted during growth between\nposition 6274 and 8030. Digest suggests\nlarger species present with the greatest\nincrease in size being 3.3Kb." CHROMOSOME_I assembly_tag Clone 11626573 11626576 . - . Note "right end: T22H2" CHROMOSOME_I assembly_tag Finished 11644302 11644310 . + . Note "Left: Y47H9B " CHROMOSOME_I assembly_tag Clone 11644406 11644409 . - . Note "right end: F35E2" CHROMOSOME_I assembly_tag Finished 11644406 11644409 . - . Note "Right: F35E2" CHROMOSOME_I assembly_tag Clone 11644406 11644409 . - . Note "right end: F35E2" CHROMOSOME_I assembly_tag Finished 11650629 11650632 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11650629 11650632 . + . Note "left end: ZK1151" CHROMOSOME_I assembly_tag Clone 11650629 11650632 . + . Note "left end: ZK1151" CHROMOSOME_I assembly_tag Finished 11650725 11650739 . - . Note "Right: Y47H9B " CHROMOSOME_I assembly_tag Clone 11676528 11676531 . + . Note "left end: F53B8" CHROMOSOME_I assembly_tag Finished 11676528 11676531 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11676528 11676531 . + . Note "left end: F53B8" CHROMOSOME_I assembly_tag Finished 11676627 11676642 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11690198 11690201 . - . Note "right end: ZK1151" CHROMOSOME_I assembly_tag Clone 11693853 11693856 . + . Note "left end: T02G6" CHROMOSOME_I assembly_tag Finished 11693853 11693856 . + . Note "Left: T02G6" CHROMOSOME_I assembly_tag Clone 11693853 11693856 . + . Note "left end: T02G6" CHROMOSOME_I assembly_tag Finished 11693953 11693966 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11714614 11714617 . - . Note "right end: F53B8" CHROMOSOME_I assembly_tag Finished 11731169 11731173 . + . Note "Left: Y47H9C" CHROMOSOME_I assembly_tag Clone 11731269 11731272 . + . Note "right end: T02G6" CHROMOSOME_I assembly_tag Clone 11731269 11731272 . - . Note "right end: T02G6" CHROMOSOME_I assembly_tag Finished 11731269 11731272 . - . Note "Right: T02G6\n" CHROMOSOME_I assembly_tag annotation 11773130 11773140 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nBoth reads from a short insert library \npropared from a single pUC" CHROMOSOME_I assembly_tag annotation 11781164 11781166 . + . Note "First select a Feature -\n[x] Unsure\n[ ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nBases unsure.Only primer reads.May be 1 or more bases missing\n" CHROMOSOME_I assembly_tag Clone 11806396 11806401 . + . Note "left end: R09B3" CHROMOSOME_I assembly_tag Clone 11806396 11806401 . + . Note "left end: R09B3" CHROMOSOME_I assembly_tag Finished 11806396 11806401 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 11806496 11806510 . - . Note "Right: Y47H9C" CHROMOSOME_I assembly_tag Finished 11813850 11813855 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 11813850 11813855 . + . Note "left end: R06C1" CHROMOSOME_I assembly_tag Clone 11813850 11813855 . + . Note "left end: R06C1" CHROMOSOME_I assembly_tag Finished 11813954 11813961 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11840998 11841003 . - . Note "right end: R09B3" CHROMOSOME_I assembly_tag Finished 11852723 11852726 . + . Note "Left: Y53C10A" CHROMOSOME_I assembly_tag Clone 11852824 11852829 . - . Note "right end: R06C1" CHROMOSOME_I assembly_tag Finished 11852824 11852829 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 11852824 11852829 . - . Note "right end: R06C1" CHROMOSOME_I assembly_tag annotation 11861029 11861258 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here - single clone reagion covered by a small insert library \n" CHROMOSOME_I assembly_tag annotation 11876366 11876383 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region covered by mc55c4 terminator" CHROMOSOME_I assembly_tag annotation 11915371 11915393 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here - single clone region,\ncovered by term un12b4.p1tL\n" CHROMOSOME_I assembly_tag Clone 11930767 11930770 . + . Note "left end: Y47H10" CHROMOSOME_I assembly_tag Finished 11930767 11930772 . + . Note "Left: Y47H10A" CHROMOSOME_I assembly_tag Finished 11930767 11930772 . + . Note "Left: F58D5" CHROMOSOME_I assembly_tag Clone 11930767 11930772 . + . Note "left end: Y47H10" CHROMOSOME_I assembly_tag Finished 11930872 11930875 . - . Note "Right: Y53C10A" CHROMOSOME_I assembly_tag Clone 11933370 11933373 . + . Note "left end: F58D5" CHROMOSOME_I assembly_tag Clone 11936636 11936641 . - . Note "right end: Y53C10" CHROMOSOME_I assembly_tag Finished 11972068 11972071 . + . Note "Right: F58D5" CHROMOSOME_I assembly_tag Clone 11972068 11972071 . - . Note "right end: F58D5" CHROMOSOME_I assembly_tag Finished 12095616 12095619 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12095616 12095619 . + . Note "left end: C15C6" CHROMOSOME_I assembly_tag Clone 12115959 12115962 . + . Note "left end: F14B6" CHROMOSOME_I assembly_tag Finished 12115959 12115962 . + . Note "Left: F14B6" CHROMOSOME_I assembly_tag Clone 12115959 12115962 . + . Note "left end: F14B6" CHROMOSOME_I assembly_tag Finished 12116061 12116067 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12135276 12135279 . - . Note "right end: C15C6" CHROMOSOME_I assembly_tag Clone 12145135 12145138 . + . Note "left end: F41D3" CHROMOSOME_I assembly_tag Clone 12145135 12145138 . + . Note "left end: F41D3" CHROMOSOME_I assembly_tag Finished 12145135 12145138 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 12145238 12145241 . - . Note "Right: F14B6" CHROMOSOME_I assembly_tag Clone 12153087 12153090 . - . Note "right end: F14B6" CHROMOSOME_I assembly_tag Clone 12179891 12179894 . + . Note "left end: F56H6" CHROMOSOME_I assembly_tag Finished 12179891 12179894 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12184161 12184164 . - . Note "right end: F41D3\n" CHROMOSOME_I assembly_tag Finished 12184161 12184164 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12184161 12184164 . - . Note "right end: F41D3" CHROMOSOME_I assembly_tag Finished 12216411 12216414 . + . Note "Left: C47F8" CHROMOSOME_I assembly_tag Finished 12216512 12216515 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12216512 12216515 . - . Note "right end: F56H6" CHROMOSOME_I assembly_tag Clone 12216512 12216515 . - . Note "right end: F56H6" CHROMOSOME_I assembly_tag annotation 12227470 12227515 . + . Note "[ ] Tandem repeat \n[X] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_I assembly_tag Clone 12238125 12238128 . + . Note "left end: T09E11" CHROMOSOME_I assembly_tag Clone 12238125 12238128 . + . Note "left end: T09E11" CHROMOSOME_I assembly_tag Finished 12238125 12238128 . + . Note "Left: T09E11" CHROMOSOME_I assembly_tag Finished 12238223 12238226 . - . Note "Right: C47F8" CHROMOSOME_I assembly_tag Clone 12271774 12271777 . + . Note "left end: T15D6" CHROMOSOME_I assembly_tag Clone 12271774 12271777 . + . Note "left end: T15D6" CHROMOSOME_I assembly_tag Finished 12271774 12271777 . + . Note "Left: T15D6" CHROMOSOME_I assembly_tag Finished 12271867 12271870 . - . Note "Right: T09E11" CHROMOSOME_I assembly_tag Clone 12275939 12275942 . - . Note "right end: T09E11" CHROMOSOME_I assembly_tag Clone 12301598 12301601 . + . Note "left end: E03H4" CHROMOSOME_I assembly_tag Finished 12301598 12301601 . + . Note "Left: E03H4" CHROMOSOME_I assembly_tag Clone 12301598 12301601 . + . Note "left end: E03H4" CHROMOSOME_I assembly_tag Finished 12301699 12301702 . - . Note "Right: T15D6" CHROMOSOME_I assembly_tag Clone 12307416 12307419 . - . Note "right end: T15D6" CHROMOSOME_I assembly_tag Clone 12322681 12322684 . + . Note "left end: C54C8" CHROMOSOME_I assembly_tag Finished 12341394 12341397 . + . Note "Left: C54C8" CHROMOSOME_I assembly_tag Clone 12341496 12341499 . - . Note "right end: E03H4" CHROMOSOME_I assembly_tag Clone 12341496 12341499 . - . Note "right end: E03H4" CHROMOSOME_I assembly_tag Finished 12341496 12341499 . - . Note "Right: E03H4" CHROMOSOME_I assembly_tag Finished 12365245 12365248 . + . Note "Left: Y91F4A" CHROMOSOME_I assembly_tag Finished 12365350 12365353 . - . Note "Right: C54C8" CHROMOSOME_I assembly_tag Clone 12365350 12365353 . - . Note "right end: C54C8" CHROMOSOME_I assembly_tag Clone 12365350 12365353 . - . Note "right end: C54C8" CHROMOSOME_I assembly_tag annotation 12365648 12365814 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12366485 12366566 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12367576 12367927 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12368809 12369347 . - . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 12370596 12370599 . + . Note "left end: T27F6" CHROMOSOME_I assembly_tag Clone 12370596 12370599 . + . Note "left end: T27F6" CHROMOSOME_I assembly_tag Finished 12370596 12370599 . + . Note "Left: T27F6" CHROMOSOME_I assembly_tag Finished 12370695 12370698 . - . Note "Right: Y91F4A" CHROMOSOME_I assembly_tag annotation 12379489 12380408 . + . Note "DIGEST DATA DIFFERS BY APPROX 32 BASES.\nPOSSIBLY 2 COPIES OF 12 OR 13 BASE PAIR\nTANDEM REPEAT MISSING\n" CHROMOSOME_I assembly_tag Clone 12401055 12401058 . + . Note "left end: K11D2" CHROMOSOME_I assembly_tag Finished 12401055 12401058 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12401055 12401058 . + . Note "left end: K11D2" CHROMOSOME_I assembly_tag Finished 12401155 12401158 . - . Note "Right: T27F6" CHROMOSOME_I assembly_tag annotation 12401939 12401941 . + . Note "cosmid mutation. T27F6 reads TTCCATT\nK11D2 reads TTCGCATT" CHROMOSOME_I assembly_tag Clone 12406901 12406904 . - . Note "right end: T27F6" CHROMOSOME_I assembly_tag Clone 12427752 12427757 . + . Note "left end: W02D9" CHROMOSOME_I assembly_tag Finished 12427752 12427757 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12427752 12427757 . + . Note "left end: W02D9" CHROMOSOME_I assembly_tag Finished 12427851 12427860 . - . Note "Right: " CHROMOSOME_I assembly_tag Finished 12462667 12462673 . + . Note "Left: C49G9" CHROMOSOME_I assembly_tag Finished 12462772 12462775 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12462772 12462775 . - . Note "right end: W02D9" CHROMOSOME_I assembly_tag Clone 12462772 12462775 . - . Note "right end: W02D9" CHROMOSOME_I assembly_tag Clone 12468948 12468951 . + . Note "left end: F33E2" CHROMOSOME_I assembly_tag Finished 12468948 12468951 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12468948 12468951 . + . Note "left end: F33E2" CHROMOSOME_I assembly_tag Finished 12469050 12469059 . - . Note "Right: C49G9" CHROMOSOME_I assembly_tag annotation 12484492 12484492 . + . Note "uc77g12 calls 12 T's, the other two\ncall 13 T's. Edited to the larger\nnumber." CHROMOSOME_I assembly_tag Clone 12494994 12494997 . + . Note "left end: T07D10\n" CHROMOSOME_I assembly_tag Clone 12494994 12494997 . + . Note "left end: T07D10" CHROMOSOME_I assembly_tag Finished 12494994 12494997 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 12495098 12495101 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12509629 12509632 . - . Note "right end: F33E2" CHROMOSOME_I assembly_tag Finished 12535273 12535276 . + . Note "Left: H16D19" CHROMOSOME_I assembly_tag Clone 12535366 12535369 . - . Note "right end: T07D10" CHROMOSOME_I assembly_tag Finished 12535366 12535369 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12535366 12535369 . - . Note "right end: T07D10\n" CHROMOSOME_I assembly_tag annotation 12545503 12545531 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsingle clone = uy81d1" CHROMOSOME_I assembly_tag Clone 12547906 12547909 . + . Note "left end: H28O16" CHROMOSOME_I assembly_tag Finished 12547906 12547909 . + . Note "Left: H28O16" CHROMOSOME_I assembly_tag Clone 12547906 12547909 . + . Note "left end: H28O16" CHROMOSOME_I assembly_tag Finished 12548003 12548006 . - . Note "Right: H16D19" CHROMOSOME_I assembly_tag Clone 12551170 12551173 . - . Note "right end: H16D19" CHROMOSOME_I assembly_tag Finished 12555627 12555630 . + . Note "Left: T26E3" CHROMOSOME_I assembly_tag Clone 12555627 12555630 . + . Note "left end: T26E3" CHROMOSOME_I assembly_tag Clone 12555627 12555630 . + . Note "left end: T26E3" CHROMOSOME_I assembly_tag Finished 12555723 12555726 . - . Note "Right: H28O16\n" CHROMOSOME_I assembly_tag annotation 12556977 12556977 . + . Note "this base could be an A - only cosmid PCRs cover this area." CHROMOSOME_I assembly_tag annotation 12576817 12576839 . + . Note "there may be additional bases at this\nposition. Digest confirms assembly\nand pre-analysis finds no frame-shift." CHROMOSOME_I assembly_tag annotation 12576820 12576820 . + . Note "this base may be a T" CHROMOSOME_I assembly_tag Finished 12587761 12587764 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12587761 12587764 . + . Note "left end: F28C12" CHROMOSOME_I assembly_tag Clone 12587761 12587764 . + . Note "left end: F28C12" CHROMOSOME_I assembly_tag Finished 12587862 12587868 . - . Note "Right: T26E3" CHROMOSOME_I assembly_tag Clone 12597430 12597433 . - . Note "right end: T26E3" CHROMOSOME_I assembly_tag Clone 12602307 12602310 . + . Note "left end: T06G6" CHROMOSOME_I assembly_tag Clone 12602307 12602310 . + . Note "left end: T06G6" CHROMOSOME_I assembly_tag Finished 12602307 12602310 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 12602407 12602413 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12630926 12630931 . + . Note "left end: W02A11" CHROMOSOME_I assembly_tag Finished 12630926 12630931 . + . Note "Left: W02A11" CHROMOSOME_I assembly_tag Clone 12630926 12630931 . + . Note "left end: W02A11" CHROMOSOME_I assembly_tag Finished 12631033 12631042 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 12639023 12639026 . - . Note "right end: T06G6" CHROMOSOME_I assembly_tag Finished 12641005 12641008 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 12641005 12641008 . + . Note "left end: B0019\n" CHROMOSOME_I assembly_tag Finished 12663125 12663128 . - . Note "Right: W02A11" CHROMOSOME_I assembly_tag Clone 12663125 12663128 . - . Note "right end: W02A11\n" CHROMOSOME_I assembly_tag Clone 12663125 12663128 . - . Note "right end: W02A11" CHROMOSOME_I assembly_tag annotation 12670367 12670389 . + . Note "23 Cs - this is an estimated base count. \nthere may be 19-25 Cs here." CHROMOSOME_I assembly_tag Finished 12680690 12680695 . + . Note "Left: Y18D10A " CHROMOSOME_I assembly_tag Clone 12680791 12680794 . - . Note "right end: B0019" CHROMOSOME_I assembly_tag Clone 12680791 12680794 . - . Note "right end: B0019" CHROMOSOME_I assembly_tag Finished 12680791 12680794 . - . Note "Right: " CHROMOSOME_I assembly_tag annotation 12682742 12683601 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat with base variations of the sequence:AAATATTAATTAAATAAATAAAThere may be fewer or more copies of the repeat than are reperesented here.There may be some base discrepancies." CHROMOSOME_I assembly_tag annotation 12683154 12683168 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[x] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12720150 12720177 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nDye-primer reads only across this region\n" CHROMOSOME_I assembly_tag annotation 12754958 12755353 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -All reads across this region probed from a short insert library prepared from a pcr of a single clone." CHROMOSOME_I assembly_tag annotation 12783380 12783393 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Only one dye-primer read over this region.All other chemistries fail." CHROMOSOME_I assembly_tag annotation 12799541 12800017 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat with base variations of the sequence:TGCAAAAAGGGGATCThere may be fewer or more copies of the repeat than are represented here.There may be some base discrepancies." CHROMOSOME_I assembly_tag annotation 12799735 12799748 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[x] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12812504 12812551 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -All reads across this region come from a short insert library prepped from a single clone" CHROMOSOME_I assembly_tag annotation 12827848 12827864 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Reads over this region are all from a short insert library prepped from asingle clone " CHROMOSOME_I assembly_tag Finished 12833455 12833458 . + . Note "Left: F08A8" CHROMOSOME_I assembly_tag Clone 12833455 12833458 . + . Note "left end: F08A8" CHROMOSOME_I assembly_tag Clone 12833455 12833458 . + . Note "left end: F08A8" CHROMOSOME_I assembly_tag Finished 12833555 12833567 . - . Note "Right: Y18D10A" CHROMOSOME_I assembly_tag Clone 12851087 12851092 . - . Note "right end: Y18D10" CHROMOSOME_I assembly_tag annotation 12853415 12853435 . + . Note "single clone region\nBAMH1 digest confirms overall assembly" CHROMOSOME_I assembly_tag annotation 12853711 12853979 . + . Note "single clone region\noverall assembly confirmed by BamH1 \ndigest" CHROMOSOME_I assembly_tag Finished 12860112 12860115 . + . Note "Left: C47B2" CHROMOSOME_I assembly_tag Clone 12860112 12860115 . + . Note "left end: C47B2" CHROMOSOME_I assembly_tag Clone 12860112 12860115 . + . Note "left end: C47B2" CHROMOSOME_I assembly_tag Finished 12860211 12860214 . - . Note "Right: F08A8" CHROMOSOME_I assembly_tag Clone 12870764 12870767 . - . Note "right end: F08A8" CHROMOSOME_I assembly_tag Clone 12888879 12888882 . + . Note "left end: CC4" CHROMOSOME_I assembly_tag Clone 12888879 12888882 . + . Note "left end: CC4" CHROMOSOME_I assembly_tag Finished 12888879 12888882 . + . Note "Left: CC4" CHROMOSOME_I assembly_tag Finished 12888977 12888982 . - . Note "Right: C47B2" CHROMOSOME_I assembly_tag annotation 12915271 12915296 . + . Note "single M13 clone.\nbase accuracy cannot be guarenteed." CHROMOSOME_I assembly_tag annotation 12915359 12915359 . + . Note "this base could be a G" CHROMOSOME_I assembly_tag annotation 12915372 12915372 . + . Note "this base could be a G" CHROMOSOME_I assembly_tag annotation 12915374 12915374 . + . Note "this base is unclear" CHROMOSOME_I assembly_tag annotation 12915413 12915415 . + . Note "unclear. there may be only 2 Cs here" CHROMOSOME_I assembly_tag annotation 12916164 12916164 . + . Note "this base may not exist" CHROMOSOME_I assembly_tag annotation 12916177 12916177 . + . Note "this base is very unclear" CHROMOSOME_I assembly_tag annotation 12916273 12916273 . + . Note "this base could be a T" CHROMOSOME_I assembly_tag annotation 12916278 12916278 . + . Note "this base could be a T" CHROMOSOME_I assembly_tag annotation 12916616 12919549 . + . Note "40 copies of 1 36bp element and a 79bp\nelement. Digest with AVAII and SALI\nshows this region is about the right \nsize. base accuracy cannot be\nguarenteed over this area." CHROMOSOME_I assembly_tag Finished 12920839 12920842 . + . Note "Left: ZK256" CHROMOSOME_I assembly_tag Clone 12920938 12920941 . - . Note "right end: CC4" CHROMOSOME_I assembly_tag Finished 12920938 12920941 . - . Note "Right: CC4" CHROMOSOME_I assembly_tag Clone 12920938 12920941 . - . Note "right end: CC4" CHROMOSOME_I assembly_tag Finished 12930008 12930011 . + . Note "Left: W05B5" CHROMOSOME_I assembly_tag Clone 12930008 12930011 . + . Note "left end: W05B5" CHROMOSOME_I assembly_tag Clone 12930008 12930011 . + . Note "left end: W05B5" CHROMOSOME_I assembly_tag Finished 12930108 12930112 . - . Note "Right: ZK256 " CHROMOSOME_I assembly_tag Clone 12945003 12945006 . - . Note "right end: ZK256" CHROMOSOME_I assembly_tag Finished 12959383 12959386 . + . Note "Left: Y26D4A" CHROMOSOME_I assembly_tag annotation 12959438 12959485 . - . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Finished 12959486 12959489 . - . Note "Right: W05B5" CHROMOSOME_I assembly_tag Clone 12959486 12959489 . - . Note "right end: W05B5" CHROMOSOME_I assembly_tag Clone 12959486 12959489 . - . Note "left end: W05B5" CHROMOSOME_I assembly_tag annotation 12972720 12973061 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsmall insert library of uz59d11" CHROMOSOME_I assembly_tag annotation 12981335 12981413 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 12985883 12985984 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag annotation 13000136 13000197 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Finished 13002659 13002662 . + . Note "Left: C17H1" CHROMOSOME_I assembly_tag Clone 13002659 13002662 . + . Note "left end: C17H1" CHROMOSOME_I assembly_tag Clone 13002659 13002662 . + . Note "left end: C17H1" CHROMOSOME_I assembly_tag Finished 13002759 13002762 . - . Note "Right: Y26D4A" CHROMOSOME_I assembly_tag annotation 13018562 13018736 . + . Note "Single clone area.\nPossible descrepancies, \nrestriction digest good." CHROMOSOME_I assembly_tag Clone 13039814 13039817 . + . Note "left end: F22G12" CHROMOSOME_I assembly_tag Clone 13039814 13039817 . + . Note "left end: F22G12" CHROMOSOME_I assembly_tag Finished 13039814 13039817 . + . Note "Left: F22G12" CHROMOSOME_I assembly_tag Finished 13039916 13039919 . - . Note "Right: C17H1" CHROMOSOME_I assembly_tag annotation 13047082 13047092 . + . Note "Run of T's. Some clones say 10 and\nsome say 11 so edited to the longest\nrun with several representatives. " CHROMOSOME_I assembly_tag Clone 13048733 13048736 . - . Note "right end: C17H1" CHROMOSOME_I assembly_tag Clone 13069289 13069292 . + . Note "left end: F17B5" CHROMOSOME_I assembly_tag Clone 13069289 13069292 . + . Note "left end: F17B5" CHROMOSOME_I assembly_tag Finished 13069289 13069292 . + . Note "Left: " CHROMOSOME_I assembly_tag Finished 13069393 13069396 . - . Note "Right: F22G12" CHROMOSOME_I assembly_tag Finished 13105681 13105686 . + . Note "Left: ZK1225" CHROMOSOME_I assembly_tag Clone 13105787 13105790 . - . Note "right end: F17B5" CHROMOSOME_I assembly_tag Finished 13105787 13105790 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 13105787 13105790 . - . Note "right end: F17B5" CHROMOSOME_I assembly_tag Finished 13128098 13128101 . + . Note "Left: ZK1053" CHROMOSOME_I assembly_tag Clone 13128098 13128101 . + . Note "left end: ZK1053" CHROMOSOME_I assembly_tag Clone 13128098 13128101 . + . Note "left end: ZK1053" CHROMOSOME_I assembly_tag Finished 13128202 13128208 . - . Note "Right: ZK1225" CHROMOSOME_I assembly_tag annotation 13130931 13132098 . + . Note "15 copies of 39mer tandem repeat.\ndigest with Hind111, EcoR1 shows \nthere are 19-20 copies missing in\nthe assembly. (750-800bp)" CHROMOSOME_I assembly_tag annotation 13132482 13132493 . + . Note "2 m13 clones show 11 Cs here" CHROMOSOME_I assembly_tag Finished 13150093 13150096 . + . Note "Left: F44F1" CHROMOSOME_I assembly_tag Clone 13150093 13150096 . + . Note "left end: F44F1" CHROMOSOME_I assembly_tag Clone 13150093 13150096 . + . Note "left end: F44F1" CHROMOSOME_I assembly_tag Finished 13150195 13150203 . - . Note "Right: ZK1053" CHROMOSOME_I assembly_tag Clone 13159378 13159381 . - . Note "right end: ZK1053" CHROMOSOME_I assembly_tag Finished 13172426 13172429 . + . Note "Left: M01E5" CHROMOSOME_I assembly_tag Clone 13172426 13172429 . + . Note "left end: M01E5" CHROMOSOME_I assembly_tag Clone 13172426 13172429 . + . Note "left end: M01E5" CHROMOSOME_I assembly_tag Finished 13172525 13172528 . - . Note "Right: F44F1" CHROMOSOME_I assembly_tag Clone 13185708 13185711 . - . Note "right end: F44F1" CHROMOSOME_I assembly_tag Clone 13200168 13200171 . + . Note "left end: T04D3" CHROMOSOME_I assembly_tag Finished 13200168 13200171 . + . Note "Left: " CHROMOSOME_I assembly_tag Clone 13200168 13200171 . + . Note "left end: T04D3" CHROMOSOME_I assembly_tag Finished 13200270 13200273 . - . Note "Right: M01E5" CHROMOSOME_I assembly_tag Clone 13213870 13213873 . - . Note "right end: M01E5" CHROMOSOME_I assembly_tag Finished 13235282 13235285 . + . Note "Left: W08E3" CHROMOSOME_I assembly_tag Finished 13235384 13235387 . - . Note "Right: " CHROMOSOME_I assembly_tag Clone 13235384 13235387 . - . Note "right end: T04D3" CHROMOSOME_I assembly_tag Clone 13235384 13235387 . - . Note "right end: T04D3" CHROMOSOME_I assembly_tag Finished 13244249 13244255 . + . Note "Left: Y40B1A " CHROMOSOME_I assembly_tag Clone 13244348 13244351 . + . Note "right end: W08E3" CHROMOSOME_I assembly_tag Finished 13244348 13244351 . - . Note "Right: W08E3" CHROMOSOME_I assembly_tag Clone 13244348 13244351 . - . Note "right end: W08E3" CHROMOSOME_I assembly_tag annotation 13263331 13263446 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n\n" CHROMOSOME_I assembly_tag annotation 13263534 13263549 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nDye-primer read from a single clone only\nAll other chemistries fail." CHROMOSOME_I assembly_tag annotation 13263879 13263981 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_I assembly_tag Clone 13272195 13272198 . + . Note "left end: C01A2" CHROMOSOME_I assembly_tag cosmid 13272195 13272198 . + . Note "vector: " CHROMOSOME_I assembly_tag Finished 13272195 13272198 . + . Note "Left: C01A2" CHROMOSOME_I assembly_tag Clone 13272195 13272198 . + . Note "left end: C01A2" CHROMOSOME_I assembly_tag Finished 13272290 13272302 . - . Note "Right: Y40B1A \n" CHROMOSOME_I assembly_tag repeat 13273270 13273300 . - . CHROMOSOME_I assembly_tag compression 13273319 13273331 . + . CHROMOSOME_I assembly_tag repeat 13273330 13273372 . - . CHROMOSOME_I assembly_tag repeat 13274354 13274396 . - . CHROMOSOME_I assembly_tag repeat 13274426 13274456 . - . CHROMOSOME_I assembly_tag compression 13279106 13279110 . + . CHROMOSOME_I assembly_tag repeat 13281984 13282009 . - . CHROMOSOME_I assembly_tag repeat 13281984 13282011 . - . CHROMOSOME_I assembly_tag repeat 13281984 13282013 . - . CHROMOSOME_I assembly_tag repeat 13281984 13282015 . - . CHROMOSOME_I assembly_tag repeat 13281984 13282017 . - . CHROMOSOME_I assembly_tag repeat 13281985 13282019 . - . CHROMOSOME_I assembly_tag repeat 13281987 13282021 . - . CHROMOSOME_I assembly_tag repeat 13281989 13282023 . - . CHROMOSOME_I assembly_tag repeat 13281991 13282025 . - . CHROMOSOME_I assembly_tag repeat 13281993 13282027 . - . CHROMOSOME_I assembly_tag repeat 13281995 13282029 . - . CHROMOSOME_I assembly_tag repeat 13281997 13282031 . - . CHROMOSOME_I assembly_tag repeat 13281999 13282033 . - . CHROMOSOME_I assembly_tag repeat 13282001 13282035 . - . CHROMOSOME_I assembly_tag repeat 13282003 13282036 . - . CHROMOSOME_I assembly_tag repeat 13282005 13282036 . - . CHROMOSOME_I assembly_tag repeat 13282007 13282036 . - . CHROMOSOME_I assembly_tag repeat 13282009 13282036 . - . CHROMOSOME_I assembly_tag repeat 13282011 13282036 . - . CHROMOSOME_I assembly_tag Clone 13290283 13290287 . + . Note "left end: W05H12" CHROMOSOME_I assembly_tag comment 13290283 13290287 . - . Note "?end" CHROMOSOME_I assembly_tag repeat 13290727 13290743 . + . CHROMOSOME_I assembly_tag comment 13299763 13299767 . - . Note "?diverges tracking error>???" CHROMOSOME_I assembly_tag comment 13299908 13299912 . + . Note "repeat here somewhere " CHROMOSOME_I assembly_tag comment 13299937 13299942 . - . Note "?diverges again!!!!!!" CHROMOSOME_I assembly_tag repeat 13302735 13302760 . - . Note "Repeats with contig ue39b1.s1t, offset 9790\n" CHROMOSOME_I assembly_tag repeat 13302735 13302762 . - . Note "Repeats with contig ue39b1.s1t, offset 9790\n" CHROMOSOME_I assembly_tag repeat 13302735 13302764 . - . Note "Repeats with contig ue39b1.s1t, offset 9790\n" CHROMOSOME_I assembly_tag repeat 13302735 13302766 . - . Note "Repeats with contig ue39b1.s1t, offset 9790\n" CHROMOSOME_I assembly_tag repeat 13302735 13302768 . - . Note "Repeats with contig ue39b1.s1t, offset 9790\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9795\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9805\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9791\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9799\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9807\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9797\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9801\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9803\n" CHROMOSOME_I assembly_tag repeat 13302735 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9793\n" CHROMOSOME_I assembly_tag repeat 13302736 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9809\n" CHROMOSOME_I assembly_tag repeat 13302738 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9811\n" CHROMOSOME_I assembly_tag repeat 13302740 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9813\n" CHROMOSOME_I assembly_tag repeat 13302742 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9815\n" CHROMOSOME_I assembly_tag repeat 13302744 13302769 . - . Note "Repeats with contig ue39b1.s1t, offset 9817\n" CHROMOSOME_I assembly_tag repeat 13304744 13304785 . + . CHROMOSOME_I assembly_tag Alu 13304741 13304747 . - . Note "segment: 159" CHROMOSOME_I assembly_tag repeat 13304531 13304753 . - . Note "Repeats with contig ue36h4.s1, offset 1\n" CHROMOSOME_I assembly_tag repeat 13304786 13304824 . + . CHROMOSOME_I assembly_tag repeat 13304727 13304857 . - . Note "Repeats with contig ue43h3.s1t, offset 175\n" CHROMOSOME_I assembly_tag repeat 13304727 13304857 . - . Note "Repeats with contig ue36h6.s1, offset 4607\n" CHROMOSOME_I assembly_tag repeat 13304755 13304857 . - . Note "Repeats with contig ue36h6.s1, offset 4401\n" CHROMOSOME_I assembly_tag repeat 13304729 13304883 . - . Note "Repeats with contig ue36h6.s1, offset 4661\n" CHROMOSOME_I assembly_tag repeat 13304729 13304883 . - . Note "Repeats with contig ue43h3.s1t, offset 229\n" CHROMOSOME_I assembly_tag repeat 13304755 13304883 . - . Note "Repeats with contig ue36h6.s1, offset 5520\n" CHROMOSOME_I assembly_tag repeat 13304781 13304883 . - . Note "Repeats with contig ue36h6.s1, offset 4323\n" CHROMOSOME_I assembly_tag repeat 13304807 13304909 . - . Note "Repeats with contig ue36h6.s1, offset 4375\n" CHROMOSOME_I assembly_tag repeat 13304781 13304913 . - . Note "Repeats with contig ue35c4.sl, offset 289\n" CHROMOSOME_I assembly_tag repeat 13304807 13304921 . - . Note "Repeats with contig ue43h3.s1t, offset 73\n" CHROMOSOME_I assembly_tag repeat 13304807 13304921 . - . Note "Repeats with contig ue36h6.s1, offset 4505\n" CHROMOSOME_I assembly_tag repeat 13304825 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 255\n" CHROMOSOME_I assembly_tag repeat 13304825 13304921 . - . Note "Repeats with contig ue43h3.s1t, offset 143\n" CHROMOSOME_I assembly_tag repeat 13304825 13304921 . - . Note "Repeats with contig ue36h6.s1, offset 4575\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 237\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 185\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 55\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue36h6.s1, offset 5546\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue43h3.s1t, offset 281\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 159\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 211\n" CHROMOSOME_I assembly_tag repeat 13304859 13304921 . - . Note "Repeats with contig ue36h6.s1, offset 4713\n" CHROMOSOME_I assembly_tag repeat 13304885 13304921 . - . Note "Repeats with contig ue36h6.s1, offset 4557\n" CHROMOSOME_I assembly_tag repeat 13304885 13304921 . - . Note "Repeats with contig ue43h3.s1t, offset 125\n" CHROMOSOME_I assembly_tag repeat 13304885 13304921 . - . Note "Repeats with contig ue43h3.s1t, offset 333\n" CHROMOSOME_I assembly_tag repeat 13304885 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 133\n" CHROMOSOME_I assembly_tag repeat 13304911 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 81\n" CHROMOSOME_I assembly_tag repeat 13304911 13304921 . - . Note "Repeats with contig ue43h3.s1t, offset 73\n" CHROMOSOME_I assembly_tag repeat 13304911 13304921 . - . Note "Repeats with contig ue43h3.s1t, offset 125\n" CHROMOSOME_I assembly_tag repeat 13304911 13304921 . - . Note "Repeats with contig ue36h6.s1, offset 4505\n" CHROMOSOME_I assembly_tag repeat 13304911 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 315\n" CHROMOSOME_I assembly_tag repeat 13304911 13304921 . - . Note "Repeats with contig ue35c4.sl, offset 133\n" CHROMOSOME_I assembly_tag repeat 13304911 13304921 . - . Note "Repeats with contig ue36h6.s1, offset 4557\n" CHROMOSOME_I assembly_tag repeat 13304922 13304953 . + . CHROMOSOME_I assembly_tag repeat 13304954 13304960 . - . Note "Repeats with contig ue36h6.s1, offset 50" CHROMOSOME_I assembly_tag repeat 13304954 13304961 . - . Note "Repeats with contig ue36h6.s1, offset 53" CHROMOSOME_I assembly_tag repeat 13304954 13304963 . - . Note "Repeats with contig ue36h6.s1, offset 49" CHROMOSOME_I assembly_tag repeat 13304954 13304986 . - . Note "Repeats with contig ue36h6.s1, offset 50" CHROMOSOME_I assembly_tag repeat 13304954 13304987 . - . Note "Repeats with contig ue36h6.s1, offset 53" CHROMOSOME_I assembly_tag repeat 13304954 13304989 . - . Note "Repeats with contig ue36h6.s1, offset 49" CHROMOSOME_I assembly_tag Alu 13305001 13305007 . - . Note "segment: 150" CHROMOSOME_I assembly_tag repeat 13304954 13305012 . - . Note "Repeats with contig ue36h6.s1, offset 50" CHROMOSOME_I assembly_tag repeat 13304954 13305013 . - . Note "Repeats with contig ue36h6.s1, offset 53" CHROMOSOME_I assembly_tag repeat 13304954 13305015 . - . Note "Repeats with contig ue36h6.s1, offset 49" CHROMOSOME_I assembly_tag repeat 13304954 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 50" CHROMOSOME_I assembly_tag repeat 13304954 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 52" CHROMOSOME_I assembly_tag repeat 13304954 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 49" CHROMOSOME_I assembly_tag repeat 13304964 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 52" CHROMOSOME_I assembly_tag repeat 13304967 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 49" CHROMOSOME_I assembly_tag repeat 13304969 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 50" CHROMOSOME_I assembly_tag repeat 13304990 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 52" CHROMOSOME_I assembly_tag repeat 13304993 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 49" CHROMOSOME_I assembly_tag repeat 13304995 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 50" CHROMOSOME_I assembly_tag repeat 13305016 13305017 . - . Note "Repeats with contig ue36h6.s1, offset 52" CHROMOSOME_I assembly_