##gff-version 2 ##date 2001-04-10 ##sequence-region CHROMOSOME_IV 1 17450863 CHROMOSOME_IV assembly_tag Finished 1 6 . + . Note "Left: cTel4X" CHROMOSOME_IV assembly_tag Finished 1239 1243 . + . Note "Right: cTel4X" CHROMOSOME_IV assembly_tag Clone 8733216 8733219 . + . Note "left end: Beginning of F21D5" CHROMOSOME_IV assembly_tag Clone 8754289 8754292 . + . Note "left end: Beginning of F20C5" CHROMOSOME_IV assembly_tag Clone 8754289 8754292 . + . Note "left end: F20C5" CHROMOSOME_IV assembly_tag Finished 8754289 8754292 . + . Note "Left: F20C5" CHROMOSOME_IV assembly_tag Clone 8775303 8775306 . + . Note "right end: Right end F21D5" CHROMOSOME_IV assembly_tag Clone 8783978 8783981 . + . Note "left end: BEGINNING OF C33D9" CHROMOSOME_IV assembly_tag Clone 8783978 8783981 . + . Note "left end: Start of C33D9" CHROMOSOME_IV assembly_tag Finished 8783978 8783981 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 8784076 8784081 . + . Note "Right: F20C5" CHROMOSOME_IV assembly_tag Clone 8796953 8796956 . + . Note "right end: END OF F20C5" CHROMOSOME_IV assembly_tag annotation 8801324 8801324 . + . Note "missing A in this single (+) read (terminated). All other reads (7 -/1+) have A present. " CHROMOSOME_IV assembly_tag Clone 8818206 8818209 . + . Note "left end: Beginning of T28C6" CHROMOSOME_IV assembly_tag Clone 8818206 8818209 . + . Note "left end: BEGINNING OF T28C6" CHROMOSOME_IV assembly_tag Finished 8818206 8818209 . + . Note "Left: T28C6" CHROMOSOME_IV assembly_tag Finished 8818306 8818309 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 8827420 8827423 . + . Note "right end: END OF C33D9" CHROMOSOME_IV assembly_tag Clone 8851921 8851924 . + . Note "left end: Beginning of T11B7" CHROMOSOME_IV assembly_tag Finished 8851921 8851924 . + . Note "Left: T11B7" CHROMOSOME_IV assembly_tag Clone 8851921 8851924 . + . Note "left end: Beginning of T11B7" CHROMOSOME_IV assembly_tag Finished 8852021 8852024 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 8856737 8856740 . + . Note "right end: END of T28C6" CHROMOSOME_IV assembly_tag Finished 8869054 8869057 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 8869054 8869057 . + . Note "left end: Beginning of C09G9" CHROMOSOME_IV assembly_tag Clone 8869054 8869057 . + . Note "left end: Beginning of C09G9" CHROMOSOME_IV assembly_tag Finished 8869153 8869157 . + . Note "Right: T11B7 " CHROMOSOME_IV assembly_tag comment 8870527 8870532 . + . Note "?check no of Gs" CHROMOSOME_IV assembly_tag ambiguous 8870800 8870806 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8871604 8871610 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag compression 8872324 8872330 . + . Note "+" CHROMOSOME_IV assembly_tag compression 8876292 8876304 . + . Note "-" CHROMOSOME_IV assembly_tag compression 8876305 8876317 . + . Note "+" CHROMOSOME_IV assembly_tag ambiguous 8876306 8876314 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8876307 8876307 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag ambiguous 8876311 8876311 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag compression 8877970 8877981 . + . Note "-" CHROMOSOME_IV assembly_tag ambiguous 8879575 8879575 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag compression 8881416 8881432 . + . Note "both" CHROMOSOME_IV assembly_tag ambiguous 8881423 8881428 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8881882 8881882 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag ambiguous 8882113 8882119 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag ambiguous 8882353 8882353 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag ambiguous 8882524 8882524 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_IV assembly_tag Clone 8886258 8886261 . + . Note "right end: End of T11B7 " CHROMOSOME_IV assembly_tag compression 8886392 8886403 . + . Note "+" CHROMOSOME_IV assembly_tag comment 8887374 8887400 . + . Note "?rerun this read" CHROMOSOME_IV assembly_tag compression 8891520 8891528 . + . Note "-" CHROMOSOME_IV assembly_tag oligo 8891826 8891843 . + . Note "serial#=C09G9.1 template=xn36b9.s1 sequence=CAACGGGTTTCATTATTG flags=Tm 50.5" CHROMOSOME_IV assembly_tag oligo 8892339 8892357 . + . Note "serial#=C09G9.3 template=xn39g1.s1 sequence=GAGAACTTTTTTGTTGCAG flags=Tm 51.1" CHROMOSOME_IV assembly_tag oligo 8892752 8892768 . + . Note "serial#=C09G9.2 template=xn35e5.s1 sequence=ATACAACTAGCCATGCC flags=Tm 52.2" CHROMOSOME_IV assembly_tag compression 8892938 8892951 . + . Note "+" CHROMOSOME_IV assembly_tag oligo 8896138 8896155 . + . Note "serial#=C09G9.4 template=xn32c3.s1 sequence=GAGTGTCAGCTAAAAATG flags=Tm 50.5" CHROMOSOME_IV assembly_tag ambiguous 8899895 8899901 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_IV assembly_tag compression 8900800 8900804 . + . Note "- see terminator for read xn39d8" CHROMOSOME_IV assembly_tag Clone 8901114 8901117 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 8901114 8901117 . + . Note "Left: C27B7" CHROMOSOME_IV assembly_tag Clone 8901114 8901117 . + . Note "left end: Beginning of C27B7" CHROMOSOME_IV assembly_tag Finished 8901214 8901217 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 8911817 8911820 . + . Note "right end: End of C09G9" CHROMOSOME_IV assembly_tag Clone 8930374 8930377 . + . Note "left end: D1046" CHROMOSOME_IV assembly_tag Clone 8930374 8930377 . + . Note "left end: D1046." CHROMOSOME_IV assembly_tag Finished 8930374 8930377 . + . Note "Left: D1046" CHROMOSOME_IV assembly_tag Finished 8930474 8930477 . + . Note "Right: C27B7" CHROMOSOME_IV assembly_tag Clone 8946382 8946385 . + . Note "right end: C27B7" CHROMOSOME_IV assembly_tag Finished 8973988 8973991 . + . Note "Left: VD1046R" CHROMOSOME_IV assembly_tag Clone 8974056 8974059 . + . Note "right end: D1046" CHROMOSOME_IV assembly_tag Finished 8974056 8974059 . + . Note "Right: D1046" CHROMOSOME_IV assembly_tag Clone 8974056 8974059 . + . Note "right end: D1046" CHROMOSOME_IV assembly_tag Clone 8974410 8974413 . + . Note "left end: Beginning of C53B4" CHROMOSOME_IV assembly_tag Finished 8974410 8974413 . + . Note "Left: C53B4" CHROMOSOME_IV assembly_tag Clone 8974410 8974413 . + . Note "left end: C53B4" CHROMOSOME_IV assembly_tag Finished 8974510 8974513 . + . Note "Right: VD1046R" CHROMOSOME_IV assembly_tag annotation 8977307 8977309 . + . Note "Region adjacent to inverted repeat covered by only one clone but oligo and terminator walks from cosmid DNA confirm (and so does restriction digest)." CHROMOSOME_IV assembly_tag Finished 9007090 9007093 . + . Note "Left: C53D6" CHROMOSOME_IV assembly_tag Clone 9007090 9007093 . + . Note "left end: Start of C53D6" CHROMOSOME_IV assembly_tag Clone 9007090 9007093 . + . Note "left end: Start of C53D6" CHROMOSOME_IV assembly_tag Finished 9007191 9007194 . + . Note "Right: C53B4" CHROMOSOME_IV assembly_tag Clone 9015998 9016001 . + . Note "right end: End of C53D4" CHROMOSOME_IV assembly_tag Finished 9049042 9049045 . + . Note "Left: Y73F4A" CHROMOSOME_IV assembly_tag Clone 9049142 9049145 . + . Note "right end: End of C53D6" CHROMOSOME_IV assembly_tag Clone 9049142 9049145 . + . Note "right end: C53D6" CHROMOSOME_IV assembly_tag Finished 9049142 9049145 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 9057251 9060495 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[X] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nThis region contains forced joins and \nunsure bases." CHROMOSOME_IV assembly_tag Clone 9077737 9077742 . + . Note "left end: ZC410" CHROMOSOME_IV assembly_tag Clone 9077737 9077742 . + . Note "left end: Start of ZC410" CHROMOSOME_IV assembly_tag Clone 9077737 9077742 . + . Note "left end: ZC410" CHROMOSOME_IV assembly_tag Finished 9077737 9077742 . + . Note "Left: ZC410" CHROMOSOME_IV assembly_tag annotation 9077746 9077746 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nThis base was called A in ZC410" CHROMOSOME_IV assembly_tag annotation 9077754 9077754 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[X] Other\nAdd a comment here -\nThis base was called G in clone ZC410" CHROMOSOME_IV assembly_tag annotation 9077761 9077840 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[X] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_IV assembly_tag annotation 9077762 9079170 . + . Note "From almost the beginning of the cosmid cloning site to 1.435bp, multiple (approx 95) copies of a 15mer (RcD1) with the following variations: GATGGGTCTCACCAC GAAGGGTCTCACCAC AATGGGTCTCACCAC GAAAGGTCTCAATAC GAAGGGTGTCACCAC GAAAGGTCTCGCCAC GAAGGGTCTCGCCAC *A**GGT*TC***AC = CONSENSUS SEQUENCE (REF: Naclerio et al. (1992) J.Mol.Biol. vol.226 pp.159-168) We have been unable to obtain either cosmid or genomic PCR products across this region. However, restriction digest data suggests fragment sizes (from cosmid DNA) of 1.8kb from SspI- cut DNA and about 2kb from Sau3AI-cut DNA. This agrees approx. with the given sequence here. Because of the repetitive nature of this sequence, we cannot guarantee base accuracy across this region." CHROMOSOME_IV assembly_tag annotation 9077762 9079170 . + . Note "From almost the beginning of thecosmid cloning site to 1.435bp,multiple (approx 95) copies of a 15mer(RcD1) with the following variations:GATGGGTCTCACCACGAAGGGTCTCACCACAATGGGTCTCACCACGAAAGGTCTCAATACGAAGGGTGTCACCACGAAAGGTCTCGCCACGAAGGGTCTCGCCAC*A**GGT*TC***AC = CONSENSUS SEQUENCE(REF: Naclerio et al. (1992)J.Mol.Biol. vol.226 pp.159-168)We have been unable to obtain eithercosmid or genomic PCR products acrossthis region. However, restrictiondigest data suggests fragment sizes(from cosmid DNA) of 1.8kb from SspI-cut DNA and about 2kb from Sau3AI-cutDNA. This agrees approx. with thegiven sequence here.Because of the repetitive nature ofthis sequence, we cannot guaranteebase accuracy across this region." CHROMOSOME_IV assembly_tag Finished 9077837 9077840 . + . Note "Right: Y73F4A" CHROMOSOME_IV assembly_tag Clone 9106561 9106564 . + . Note "left end: left hand end of C01F6" CHROMOSOME_IV assembly_tag Clone 9106561 9106564 . + . Note "left end: C01F6" CHROMOSOME_IV assembly_tag Clone 9106561 9106564 . + . Note "left end: Start of C01F6" CHROMOSOME_IV assembly_tag Finished 9106561 9106564 . + . Note "Left: C01F6" CHROMOSOME_IV assembly_tag Finished 9106661 9106664 . + . Note "Right: ZC410" CHROMOSOME_IV assembly_tag Clone 9109448 9109453 . + . Note "right end: End of ZC410" CHROMOSOME_IV assembly_tag Clone 9137738 9137741 . + . Note "left end: Start of F23B2" CHROMOSOME_IV assembly_tag Finished 9137738 9137741 . + . Note "Left: F23B2" CHROMOSOME_IV assembly_tag Clone 9137738 9137741 . + . Note "left end: F23B2" CHROMOSOME_IV assembly_tag Finished 9137838 9137841 . + . Note "Right: C01F6" CHROMOSOME_IV assembly_tag annotation 9138142 9138142 . + . Note "reads 123 anmd 1408 (the same subclone)\nhave bases AACTCT. All the rest have\nAATTCT" CHROMOSOME_IV assembly_tag Clone 9147013 9147016 . + . Note "right end: C01F6" CHROMOSOME_IV assembly_tag Finished 9176547 9176550 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9176547 9176550 . + . Note "left end: left hand end of C07C7" CHROMOSOME_IV assembly_tag Clone 9176547 9176550 . + . Note "left end: C07C7" CHROMOSOME_IV assembly_tag Finished 9176647 9176650 . + . Note "Right: F23B2" CHROMOSOME_IV assembly_tag Clone 9180414 9180417 . + . Note "right end: right hand end of F23B2" CHROMOSOME_IV assembly_tag Finished 9198387 9198390 . + . Note "Left: C46C2" CHROMOSOME_IV assembly_tag Clone 9198387 9198390 . + . Note "left end: left hand end of C46C2" CHROMOSOME_IV assembly_tag Clone 9198387 9198390 . + . Note "left end: left hand end of C46C2" CHROMOSOME_IV assembly_tag Finished 9198487 9198490 . + . Note "Right: C07C7" CHROMOSOME_IV assembly_tag Clone 9220572 9220575 . + . Note "right end: right hand end of C07C7" CHROMOSOME_IV assembly_tag Finished 9239398 9239401 . + . Note "Left: Y11D7A" CHROMOSOME_IV assembly_tag Clone 9239498 9239501 . + . Note "right end: C46C2" CHROMOSOME_IV assembly_tag Clone 9239498 9239501 . + . Note "right end: right hand end of C46C2" CHROMOSOME_IV assembly_tag Finished 9239498 9239501 . + . Note "Right: C46C2" CHROMOSOME_IV assembly_tag DSTM 9242329 9242539 . + . CHROMOSOME_IV assembly_tag DSTM 9242969 9243096 . + . CHROMOSOME_IV assembly_tag DSTM 9244561 9244776 . + . CHROMOSOME_IV assembly_tag oligo 9245169 9245185 . + . Note "serial#=\ntemplate=sw05d10.q1tU \nsequence=AGCTACACCAATGGCTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9245260 9245281 . + . Note "serial#=Y11D7.11\ntemplate=sw05d10.q1tU \nsequence=CATGTTAAAAATATTCCACACC\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9245985 9246386 . + . CHROMOSOME_IV assembly_tag oligo 9246221 9246239 . + . Note "serial#=Y11D7.27\ntemplate=sw04d5\nsequence=CACTTGTATTGGGAAAATG\nflags=\n" CHROMOSOME_IV assembly_tag repeat 9246322 9246581 . + . CHROMOSOME_IV assembly_tag annotation 9246480 9246482 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_IV assembly_tag oligo 9246500 9246517 . - . Note "serial#=Y11D7.24\ntemplate=\nsequence=TGATGGATGTATCATCAC\nflags=\n" CHROMOSOME_IV assembly_tag annotation 9246567 9246685 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nPrimer only across arms and loop of \ninverted repeat" CHROMOSOME_IV assembly_tag repeat 9246631 9246890 . + . CHROMOSOME_IV assembly_tag DSTM 9246686 9247007 . + . Note "?" CHROMOSOME_IV assembly_tag oligo 9246773 9246790 . + . Note "serial#=Y11D7.13\ntemplate=sw03f3.p1U \nsequence=AAAATGTGGTACAGGATG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9246950 9246967 . - . Note "serial#=Y11D7.12\nsequence=CCGTCCAACTTCTATAAG\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9247008 9247267 . + . CHROMOSOME_IV assembly_tag DSTM 9248534 9249064 . + . CHROMOSOME_IV assembly_tag DSTM 9249910 9250531 . + . CHROMOSOME_IV assembly_tag DSTM 9252297 9252456 . + . CHROMOSOME_IV assembly_tag DSTM 9253180 9253225 . + . CHROMOSOME_IV assembly_tag DSTM 9253266 9253374 . + . CHROMOSOME_IV assembly_tag DSTM 9254100 9254496 . + . CHROMOSOME_IV assembly_tag oligo 9256965 9256983 . + . Note "serial#=Y11D7.14\ntemplate=sw70h12.p1 \nsequence=GCATAAGAATATTATCCGC\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9256835 9257017 . - . CHROMOSOME_IV assembly_tag oligo 9257453 9257472 . - . Note "serial#=Y11D7.20\ntemplate=sw69g1.q1t \nsequence=CAGGTTACAGATAATTTTCC\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9258190 9258310 . - . CHROMOSOME_IV assembly_tag DSTM 9258311 9258463 . + . CHROMOSOME_IV assembly_tag DSTM 9258749 9259058 . - . CHROMOSOME_IV assembly_tag DSTM 9259228 9259338 . + . CHROMOSOME_IV assembly_tag oligo 9259474 9259493 . + . Note "serial#=Y11D7.16\ntemplate=sw75e11.q1t \nsequence=GATTGAAATCATTACTCACC\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9259734 9259946 . + . CHROMOSOME_IV assembly_tag oligo 9260037 9260054 . + . Note "serial#=Y11D7.17\nsequence=AGCTCTGAACTAGATTAG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9260411 9260429 . + . Note "serial#=Y11D7.18\ntemplate=sw71f6.q1t \nsequence=CCTATTCATTCTCTATCTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9260730 9260752 . + . Note "serial#=Y11D7.19\ntemplate=sw71f6.q1t \nsequence=CTTTTGTCACAAAAACATTTGAG\nflags=\n" CHROMOSOME_IV assembly_tag repeat 9260747 9260818 . + . CHROMOSOME_IV assembly_tag repeat 9260819 9260851 . + . CHROMOSOME_IV assembly_tag oligo 9260836 9260852 . + . Note "serial#=Y11D7.28\ntemplate=sw75e11\nsequence=ACGCCCATTTCTGCAAC\nflags=\n" CHROMOSOME_IV assembly_tag repeat 9260852 9260859 . + . CHROMOSOME_IV assembly_tag DSTM 9260860 9260898 . + . CHROMOSOME_IV assembly_tag repeat 9260925 9260932 . - . CHROMOSOME_IV assembly_tag DSTM 9260932 9260981 . + . CHROMOSOME_IV assembly_tag repeat 9260933 9260965 . - . CHROMOSOME_IV assembly_tag oligo 9260987 9261003 . - . Note "serial#=Y11D7.29\ntemplate=qa27e6\nsequence=TAGGGGATTACCAACTC\nflags=\n" CHROMOSOME_IV assembly_tag repeat 9260966 9261037 . - . CHROMOSOME_IV assembly_tag DSTM 9261530 9262018 . - . CHROMOSOME_IV assembly_tag DSTM 9263910 9264234 . - . CHROMOSOME_IV assembly_tag DSTM 9264557 9264636 . - . CHROMOSOME_IV assembly_tag annotation 9265734 9265898 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nThis region is covered by a short insert \nlibrary from pUC sw69a10" CHROMOSOME_IV assembly_tag oligo 9266268 9266284 . + . Note "serial#=Y11D7.15\ntemplate=sw76f4.p1ta \nsequence=CGATTTCCAACCACACG\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9266498 9266612 . - . CHROMOSOME_IV assembly_tag oligo 9266750 9266767 . - . Note "serial#=Y11D7.9\nsequence=ATCAATTATTGGCGAACG\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9266710 9266970 . - . CHROMOSOME_IV assembly_tag DSTM 9267201 9267596 . + . CHROMOSOME_IV assembly_tag oligo 9267584 9267602 . - . Note "serial#=Y11D7.10\ntemplate=sw70a9.q1t \nsequence=GAGCCATATATTAAGGATG\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9267597 9267682 . - . CHROMOSOME_IV assembly_tag oligo 9268073 9268089 . + . Note "serial#=Y11D7.23\ntemplate=sw05e5\nsequence=ACTACTGAAGTCGTGCC\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9268047 9268353 . - . CHROMOSOME_IV assembly_tag annotation 9268547 9269022 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nThis area is covered by a short insert \nlibrary of pUC sw71d2" CHROMOSOME_IV assembly_tag DSTM 9269172 9269309 . - . CHROMOSOME_IV assembly_tag DSTM 9269688 9270360 . - . CHROMOSOME_IV assembly_tag DSTM 9270738 9270988 . - . CHROMOSOME_IV assembly_tag DSTM 9270989 9271076 . + . CHROMOSOME_IV assembly_tag DSTM 9271140 9271277 . - . CHROMOSOME_IV assembly_tag DSTM 9272948 9273056 . + . CHROMOSOME_IV assembly_tag DSTM 9273215 9273341 . + . CHROMOSOME_IV assembly_tag DSTM 9273342 9274208 . - . CHROMOSOME_IV assembly_tag oligo 9274656 9274673 . + . Note "serial#=Y11D7.26\ntemplate=\nsequence=TTCTTCATCTATTGGTGC\nflags=\n" CHROMOSOME_IV assembly_tag cosmid 9274704 9274706 . + . Note "vector: " CHROMOSOME_IV assembly_tag Clone 9274704 9274707 . + . Note "left end: H22D14" CHROMOSOME_IV assembly_tag oligo 9274712 9274730 . - . Note "serial#=Y11D7.25\ntemplate=sz58h8\nsequence=CATACGGATATTGTTACTG\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9275139 9275205 . + . CHROMOSOME_IV assembly_tag DSTM 9276189 9276249 . + . CHROMOSOME_IV assembly_tag oligo 9276506 9276522 . - . Note "serial#=Y11D7.8\ntemplate=sw74e3.q1t \nsequence=TTTCGCTGCTTACTTGC\nflags=\n" CHROMOSOME_IV assembly_tag DSTM 9276749 9277060 . + . CHROMOSOME_IV assembly_tag DSTM 9278796 9278855 . + . CHROMOSOME_IV assembly_tag DSTM 9280536 9280605 . + . CHROMOSOME_IV assembly_tag DSTM 9280606 9281498 . + . CHROMOSOME_IV assembly_tag DSTM 9283376 9283475 . + . CHROMOSOME_IV assembly_tag DSTM 9283584 9283683 . + . CHROMOSOME_IV assembly_tag DSTM 9284330 9284443 . + . CHROMOSOME_IV assembly_tag DSTM 9285347 9285364 . + . CHROMOSOME_IV assembly_tag DSTM 9286366 9286424 . + . CHROMOSOME_IV assembly_tag DSTM 9288001 9288127 . + . CHROMOSOME_IV assembly_tag DSTM 9293035 9293248 . + . CHROMOSOME_IV assembly_tag DSTM 9293871 9293983 . + . CHROMOSOME_IV assembly_tag Polymorphism 9296154 9296654 . + . CHROMOSOME_IV assembly_tag Finished 9296629 9296634 . + . Note "Left: H22D14" CHROMOSOME_IV assembly_tag Clone 9296729 9296734 . + . Note "right end: Y11D7" CHROMOSOME_IV assembly_tag Finished 9296729 9296734 . + . Note "Right: Y11D7A" CHROMOSOME_IV assembly_tag Clone 9296729 9296734 . - . Note "right end: Y11D7A" CHROMOSOME_IV assembly_tag Finished 9299548 9299551 . + . Note "Left: F14A5" CHROMOSOME_IV assembly_tag Clone 9299548 9299551 . + . Note "left end: F14A5" CHROMOSOME_IV assembly_tag Clone 9299548 9299551 . + . Note "left end: Beginning of F14A5" CHROMOSOME_IV assembly_tag Finished 9299648 9299651 . - . Note "Right: H22D14" CHROMOSOME_IV assembly_tag Finished 9305655 9305658 . + . Note "Left: F49C12" CHROMOSOME_IV assembly_tag Clone 9305655 9305658 . + . Note "left end: Beginning of F49C12" CHROMOSOME_IV assembly_tag Clone 9305655 9305658 . + . Note "left end: Beginning of F49C12" CHROMOSOME_IV assembly_tag Clone 9305655 9305658 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9305655 9305769 . + . Note "Left: F49C12" CHROMOSOME_IV assembly_tag Finished 9305755 9305758 . + . Note "Right: F14A5" CHROMOSOME_IV assembly_tag Clone 9338215 9338218 . + . Note "left end: Beginning of T20D3" CHROMOSOME_IV assembly_tag Clone 9338215 9338218 . + . Note "left end: Beginning of T20D3" CHROMOSOME_IV assembly_tag Finished 9338215 9338218 . + . Note "Left: T20D3" CHROMOSOME_IV assembly_tag Finished 9338315 9338318 . + . Note "Right: F49C12" CHROMOSOME_IV assembly_tag Clone 9348051 9348054 . + . Note "right end: End of F49C12" CHROMOSOME_IV assembly_tag Clone 9370790 9370793 . + . Note "left end: Beginning C10C5" CHROMOSOME_IV assembly_tag Clone 9370790 9370793 . + . Note "left end: C10C5" CHROMOSOME_IV assembly_tag Finished 9370790 9370793 . + . Note "Left: C10C5" CHROMOSOME_IV assembly_tag Finished 9370890 9370893 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9376701 9376704 . + . Note "right end: T20D3" CHROMOSOME_IV assembly_tag Clone 9404910 9404913 . + . Note "left end: F56D5" CHROMOSOME_IV assembly_tag Finished 9404910 9404913 . + . Note "Left: F56D5" CHROMOSOME_IV assembly_tag Clone 9404910 9404913 . + . Note "left end: F56D5" CHROMOSOME_IV assembly_tag Finished 9405010 9405013 . + . Note "Right: C10C5" CHROMOSOME_IV assembly_tag Clone 9411519 9411522 . + . Note "right end: C10C5" CHROMOSOME_IV assembly_tag annotation 9421580 9421679 . + . Note "Approx 3 copies of Rc35. This is the beginning of an extensive region of multiple tandem repeats covering approx 2.5kb. Four repeat elements have been identified which are already known (Naclerio et al 1992 J.Mol.Biol.226,pp 159-168). Restriction data suggests that we may be missing approx 350bp of sequence (either Rc35 or RcD1 elements) There may be single base pair discrepancies in this region and it has not been completely double-stranded." CHROMOSOME_IV assembly_tag annotation 9421811 9422293 . + . Note "Approx 14 copies of repeat element Rc35 Restriction digest suggests that about 9 to 10 copies of this repeat element might be missing" CHROMOSOME_IV assembly_tag annotation 9422298 9423017 . + . Note "Approx 49 copies of repeat element RcD1 It is possible that some copies are missing." CHROMOSOME_IV assembly_tag annotation 9423093 9423252 . + . Note "Approx 16 copies of RcC9" CHROMOSOME_IV assembly_tag Clone 9443181 9443184 . + . Note "left end: F59B8" CHROMOSOME_IV assembly_tag Clone 9443181 9443184 . + . Note "left end: F59B8" CHROMOSOME_IV assembly_tag Finished 9443181 9443184 . + . Note "Left: F59B8" CHROMOSOME_IV assembly_tag Finished 9443281 9443284 . + . Note "Right: F56D5" CHROMOSOME_IV assembly_tag Clone 9445580 9445583 . + . Note "right end: F56D5" CHROMOSOME_IV assembly_tag Clone 9454904 9454907 . + . Note "left end: F38E11" CHROMOSOME_IV assembly_tag Finished 9454904 9454907 . + . Note "Left: F38E11" CHROMOSOME_IV assembly_tag Finished 9454904 9454907 . + . Note "Left: F38E11" CHROMOSOME_IV assembly_tag Clone 9454904 9454907 . + . Note "left end: F38E11" CHROMOSOME_IV assembly_tag Finished 9455004 9455007 . + . Note "Right: F59B8" CHROMOSOME_IV assembly_tag Finished 9455004 9455007 . + . Note "Right: F59B8" CHROMOSOME_IV assembly_tag annotation 9471061 9471061 . + . Note "One M13 clone has T base deleted in this position, 5 others confirm T base at this position." CHROMOSOME_IV assembly_tag Clone 9480409 9480412 . + . Note "right end: F59B8" CHROMOSOME_IV assembly_tag Finished 9493261 9493264 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 9493361 9493364 . + . Note "Right: F38E11" CHROMOSOME_IV assembly_tag Clone 9493361 9493364 . + . Note "right end: F38E11" CHROMOSOME_IV assembly_tag Clone 9493361 9493364 . + . Note "right end: F38E11" CHROMOSOME_IV assembly_tag Clone 9494559 9494562 . + . Note "left end: C33A12" CHROMOSOME_IV assembly_tag Clone 9494559 9494562 . + . Note "left end: C33A12" CHROMOSOME_IV assembly_tag cosmid 9494559 9494564 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 9494559 9494562 . - . Note "Left: C33A12" CHROMOSOME_IV assembly_tag Finished 9494659 9494662 . + . Note "Right: " CHROMOSOME_IV assembly_tag compression 9495382 9495395 . - . CHROMOSOME_IV assembly_tag compression 9495937 9495964 . - . CHROMOSOME_IV assembly_tag compression 9496076 9496087 . - . CHROMOSOME_IV assembly_tag oligo 9496303 9496322 . + . Note "serial#=C33A12.7\ntemplate=xq50g1.s1 \nsequence=CTTACGGAATATGTCATTAG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9500958 9500975 . + . Note "serial#=C33A12.6\ntemplate=xq50e3.s1a \nsequence=CTATCCAATTTGCTTCAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9501622 9501639 . + . Note "serial#=C33A12.5\ntemplate=xp24c8.r1b \nsequence=TTCTGTCATGTCATACAC\nflags=\n" CHROMOSOME_IV assembly_tag compression 9501957 9501969 . - . CHROMOSOME_IV assembly_tag comment 9502241 9502250 . - . Note "mis track??" CHROMOSOME_IV assembly_tag compression 9502367 9502385 . - . CHROMOSOME_IV assembly_tag compression 9504791 9504797 . + . CHROMOSOME_IV assembly_tag oligo 9505562 9505581 . + . Note "serial#=C33A12.4\ntemplate=xp17f4.s1 \nsequence=CTGATATTGTTCATTGTGTC\nflags=\n" CHROMOSOME_IV assembly_tag compression 9505983 9506025 . - . CHROMOSOME_IV assembly_tag comment 9506619 9506637 . - . Note "?" CHROMOSOME_IV assembly_tag compression 9509721 9509734 . + . CHROMOSOME_IV assembly_tag oligo 9509864 9509881 . - . Note "serial#=C33A12.3\ntemplate=xp24d6.s1 \nsequence=GCTGAGTCTGAAAATATG\nflags=\n" CHROMOSOME_IV assembly_tag comment 9510004 9510057 . + . Note "mis track" CHROMOSOME_IV assembly_tag oligo 9512930 9512947 . + . Note "serial#=C33A12.2\ntemplate=xp17a5.s1a \nsequence=CTCGTTGGTAGTTATTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9514675 9514691 . + . Note "serial#=C33A12.1\ntemplate=xp25f8.s1 \nsequence=AGAAGACCTAGTGAAGC\nflags=\n" CHROMOSOME_IV assembly_tag comment 9514781 9514801 . - . Note "JOIN???????????" CHROMOSOME_IV assembly_tag compression 9516987 9516993 . - . CHROMOSOME_IV assembly_tag compression 9518949 9518962 . - . CHROMOSOME_IV assembly_tag Clone 9519336 9519339 . + . Note "left end: F56H11" CHROMOSOME_IV assembly_tag cosmid 9519336 9519340 . + . Note "vector: Lorist6" CHROMOSOME_IV assembly_tag cosmid 9519336 9519341 . + . Note "vector: Lorist6" CHROMOSOME_IV assembly_tag cosmid 9519336 9519340 . - . Note "vector: Lorist6" CHROMOSOME_IV assembly_tag compression 9523515 9523520 . - . CHROMOSOME_IV assembly_tag compression 9524000 9524029 . - . CHROMOSOME_IV assembly_tag compression 9525420 9525476 . - . CHROMOSOME_IV assembly_tag compression 9525580 9525586 . - . CHROMOSOME_IV assembly_tag comment 9526254 9526265 . - . Note "mis tracking" CHROMOSOME_IV assembly_tag compression 9526698 9526702 . - . CHROMOSOME_IV assembly_tag compression 9529573 9529587 . - . CHROMOSOME_IV assembly_tag compression 9530989 9530994 . - . CHROMOSOME_IV assembly_tag compression 9534451 9534456 . - . CHROMOSOME_IV assembly_tag comment 9534689 9534692 . - . Note "?" CHROMOSOME_IV assembly_tag compression 9534919 9534927 . + . CHROMOSOME_IV assembly_tag oligo 9534979 9534996 . - . Note "serial#=C33A12.9\ntemplate=xp24f6.s1 \nsequence=GGGAGTACAATCTGTTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 9535821 9535838 . + . Note "serial#=C33A12.8\ntemplate=xq14e6.s1tb \nsequence=TTTATCAATAGAGCGAGG\nflags=\n" CHROMOSOME_IV assembly_tag compression 9535916 9535926 . + . CHROMOSOME_IV assembly_tag compression 9536240 9536245 . - . CHROMOSOME_IV assembly_tag compression 9536440 9536452 . + . CHROMOSOME_IV assembly_tag Finished 9536751 9536754 . + . Note "Left: F56H11" CHROMOSOME_IV assembly_tag Finished 9536852 9536855 . + . Note "Right: C33A12" CHROMOSOME_IV assembly_tag Clone 9536852 9536855 . - . Note "right end: C33A12" CHROMOSOME_IV assembly_tag Clone 9536852 9536855 . - . Note "right end: C33A12\n" CHROMOSOME_IV assembly_tag Clone 9555649 9555652 . + . Note "left end: BEGINNING OF T05A1" CHROMOSOME_IV assembly_tag Finished 9555649 9555652 . + . Note "Left: T05A1" CHROMOSOME_IV assembly_tag Clone 9555649 9555652 . + . Note "left end: T05A1\n" CHROMOSOME_IV assembly_tag Finished 9555749 9555752 . + . Note "Right: F56H11" CHROMOSOME_IV assembly_tag Clone 9587223 9587226 . + . Note "left end: BEGINNING OF F27C8 " CHROMOSOME_IV assembly_tag Finished 9587223 9587226 . + . Note "Left: F27C8" CHROMOSOME_IV assembly_tag Clone 9587223 9587226 . + . Note "left end: BEGINNING F27C8" CHROMOSOME_IV assembly_tag Finished 9587323 9587326 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9589469 9589472 . + . Note "right end: END T05A1" CHROMOSOME_IV assembly_tag Finished 9620953 9620956 . + . Note "Left: W09C2" CHROMOSOME_IV assembly_tag Clone 9620953 9620956 . + . Note "left end: BEGINNING OF W09C2 ie NotI Site" CHROMOSOME_IV assembly_tag Clone 9620953 9620956 . + . Note "left end: BEGINNING OF W09C2" CHROMOSOME_IV assembly_tag Finished 9621056 9621059 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 9624244 9624244 . + . Note "One clone has a C in this position. All other reads (9 total) have a T . " CHROMOSOME_IV assembly_tag Clone 9625809 9625812 . + . Note "right end: END OF F27C8" CHROMOSOME_IV assembly_tag annotation 9629070 9629073 . + . Note "A single clone had 6 As in this position compared with 4 As in all other reads (GAAAAAAG or GAAAAG)" CHROMOSOME_IV assembly_tag annotation 9641863 9641863 . + . Note "One clone has an A in this position. All other reads (6 total) have a G." CHROMOSOME_IV assembly_tag annotation 9649893 9649895 . + . Note "A single clone has only one T in this position. All other reads (6 total) have 3 Ts." CHROMOSOME_IV assembly_tag Clone 9651330 9651333 . + . Note "left end: BEGINNING F58G6" CHROMOSOME_IV assembly_tag Finished 9651330 9651333 . + . Note "Left: F58G6" CHROMOSOME_IV assembly_tag Clone 9651330 9651333 . + . Note "left end: BEGINNING F58G6" CHROMOSOME_IV assembly_tag Finished 9651430 9651433 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9659900 9659903 . + . Note "right end: END OF W09C2" CHROMOSOME_IV assembly_tag Finished 9682812 9682815 . + . Note "Left: ZK1251" CHROMOSOME_IV assembly_tag Clone 9682812 9682815 . + . Note "left end: BEGINNING ZK1251" CHROMOSOME_IV assembly_tag Clone 9682812 9682815 . + . Note "left end: left hand end of ZK1251" CHROMOSOME_IV assembly_tag Finished 9682912 9682915 . + . Note "Right: F58G6" CHROMOSOME_IV assembly_tag Clone 9690285 9690288 . + . Note "right end: right hand end of F58G6" CHROMOSOME_IV assembly_tag annotation 9694999 9694999 . + . Note "Most reads (6) show sequence TATT, but one clone has a base missing(TTT: no A)" CHROMOSOME_IV assembly_tag Finished 9711612 9711615 . + . Note "Left: K01H12" CHROMOSOME_IV assembly_tag Stolen 9711612 9711615 . + . Note "Read: " CHROMOSOME_IV assembly_tag Clone 9711612 9711615 . + . Note "left end: K01H12" CHROMOSOME_IV assembly_tag Clone 9711612 9711615 . + . Note "left end: left hand end of K01H12" CHROMOSOME_IV assembly_tag Finished 9711712 9711715 . + . Note "Right: ZK1251" CHROMOSOME_IV assembly_tag Clone 9723162 9723165 . + . Note "right end: right hand end of ZK1251" CHROMOSOME_IV assembly_tag Finished 9730433 9730436 . + . Note "Left: C28D4" CHROMOSOME_IV assembly_tag Clone 9730433 9730436 . + . Note "left end: left hand end of C28D4" CHROMOSOME_IV assembly_tag Clone 9730433 9730436 . + . Note "left end: C28D4" CHROMOSOME_IV assembly_tag Finished 9730533 9730536 . + . Note "Right: K01H12" CHROMOSOME_IV assembly_tag annotation 9744290 9744298 . + . Note "reads 597 & 1149 (same clone) have\nGAAAAAA, the other reads have GAAAAAAAA" CHROMOSOME_IV assembly_tag Clone 9753922 9753925 . + . Note "right end: right hand end of K01H12" CHROMOSOME_IV assembly_tag annotation 9757290 9757307 . + . Note "single clone\nconfirmed by restriction digest" CHROMOSOME_IV assembly_tag Finished 9770810 9770813 . + . Note "Left: H27C11 " CHROMOSOME_IV assembly_tag Finished 9770910 9770913 . + . Note "Right: C28D4" CHROMOSOME_IV assembly_tag Clone 9770910 9770913 . + . Note "right end: Right hand end of C28D4" CHROMOSOME_IV assembly_tag Clone 9770910 9770913 . + . Note "right end: C28D4" CHROMOSOME_IV assembly_tag annotation 9776472 9776530 . + . Note "First select a Feature -\n[x] Unsure\n[ ] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here - qa67a - d are the \nsonication reads of puc qa25g7\n" CHROMOSOME_IV assembly_tag Clone 9776669 9776672 . + . Note "left end: T13F2" CHROMOSOME_IV assembly_tag Finished 9776669 9776672 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9776669 9776672 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9776769 9776772 . + . Note "Right: H27C11" CHROMOSOME_IV assembly_tag Clone 9814621 9814628 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9814621 9814628 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9814623 9814628 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9814725 9814728 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9821894 9821897 . + . Note "right end: Right end of T13F2" CHROMOSOME_IV assembly_tag annotation 9826155 9826164 . + . CHROMOSOME_IV assembly_tag annotation 9834497 9834500 . + . Note "only one strand with terms, terms show potential GC, using spacing I think the C is an artefact" CHROMOSOME_IV assembly_tag annotation 9839315 9839317 . + . Note "base substitution t for c, gone with t in consensus" CHROMOSOME_IV assembly_tag annotation 9841771 9841783 . + . Note "this is the only match found for this read but it differs at this point then the sequence becomes the same as the consensus again. Correct base count, other reads confirm." CHROMOSOME_IV assembly_tag Finished 9845265 9845268 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9845265 9845268 . + . Note "left end: Left end of K07F5" CHROMOSOME_IV assembly_tag Clone 9845265 9845268 . + . Note "left end: left end K07F5" CHROMOSOME_IV assembly_tag Finished 9845365 9845368 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9850819 9850824 . + . Note "right end: right end of W08D2" CHROMOSOME_IV assembly_tag annotation 9853351 9853353 . + . Note "compressed C, edited from one C to two." CHROMOSOME_IV assembly_tag annotation 9864490 9864491 . + . Note "mis-edit, corrected from 1 G to 2 Gs using Ward lab data from Arizona" CHROMOSOME_IV assembly_tag Finished 9888966 9888969 . + . Note "Left: F49C8" CHROMOSOME_IV assembly_tag Finished 9889063 9889066 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9889063 9889066 . + . Note "right end: K07F5" CHROMOSOME_IV assembly_tag Clone 9889063 9889066 . + . Note "right end: right end of K07F5" CHROMOSOME_IV assembly_tag Clone 9890243 9890246 . + . Note "left end: F32B6" CHROMOSOME_IV assembly_tag Finished 9890243 9890246 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 9890243 9890246 . + . Note "Left: F32B6" CHROMOSOME_IV assembly_tag Clone 9890243 9890246 . + . Note "left end: F32B6" CHROMOSOME_IV assembly_tag Clone 9890243 9890246 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 9890243 9890244 . - . Note "left end: F32B6" CHROMOSOME_IV assembly_tag Finished 9890340 9890343 . + . Note "Right: F49C8" CHROMOSOME_IV assembly_tag Clone 9917533 9917536 . + . Note "left end: f25h8" CHROMOSOME_IV assembly_tag Clone 9917533 9917536 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 9917533 9917536 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 9917533 9917536 . + . Note "left end: Start of F25H8" CHROMOSOME_IV assembly_tag Finished 9917533 9917536 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 9917633 9917636 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 9917633 9917636 . + . Note "Right: F32B6" CHROMOSOME_IV assembly_tag annotation 9943522 9943631 . + . Note "No neg strand, so terminated pos. Reads labelled .o5 are terminators." CHROMOSOME_IV assembly_tag Clone 9950018 9950021 . + . Note "left end: Start of T13H10." CHROMOSOME_IV assembly_tag Clone 9950018 9950021 . + . Note "left end: left end of T13H10" CHROMOSOME_IV assembly_tag Finished 9950018 9950021 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 9950118 9950121 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9956693 9956696 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 9956694 9956696 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 9980515 9980518 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 9980515 9980518 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 9980515 9980518 . + . Note "left end: Left end C47E12" CHROMOSOME_IV assembly_tag Clone 9980515 9980518 . + . Note "left end: left end of C47E12" CHROMOSOME_IV assembly_tag Finished 9980615 9980618 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 9985489 9985492 . + . Note "right end: T13H10" CHROMOSOME_IV assembly_tag Clone 10018266 10018269 . + . Note "left end: Left end F44D12" CHROMOSOME_IV assembly_tag Finished 10018266 10018269 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10018266 10018269 . + . Note "left end: F44D12" CHROMOSOME_IV assembly_tag Finished 10018366 10018369 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10025015 10025018 . + . Note "right end: " CHROMOSOME_IV assembly_tag annotation 10029896 10029909 . + . Note "Neg reads call 14 As, pos reads call 13 As. I've edited to the maximum number." CHROMOSOME_IV assembly_tag Clone 10050015 10050018 . + . Note "left end: Left end of T04B2" CHROMOSOME_IV assembly_tag Clone 10050015 10050018 . + . Note "left end: T04B2" CHROMOSOME_IV assembly_tag Finished 10050015 10050018 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 10050115 10050118 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10056279 10056282 . + . Note "right end: Right end of F44D12" CHROMOSOME_IV assembly_tag Clone 10070446 10070449 . + . Note "left end: Left end W01B6" CHROMOSOME_IV assembly_tag Finished 10070446 10070449 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10070446 10070449 . + . Note "left end: Left end of W01B6" CHROMOSOME_IV assembly_tag Finished 10070546 10070549 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 10077933 10077933 . + . Note "This base could be C. Some reads clearly show C, but all reads from overlapping cosmid show A, so I've edited it to A." CHROMOSOME_IV assembly_tag Clone 10087104 10087107 . + . Note "right end: Right end of T04B2" CHROMOSOME_IV assembly_tag Clone 10098464 10098467 . + . Note "left end: left end of C04G2" CHROMOSOME_IV assembly_tag Finished 10098464 10098467 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10098464 10098467 . + . Note "left end: left end of C04G2" CHROMOSOME_IV assembly_tag Finished 10098564 10098567 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10105725 10105732 . + . Note "right end: W01B6" CHROMOSOME_IV assembly_tag Clone 10105725 10105732 . + . Note "right end: " CHROMOSOME_IV assembly_tag Masked 10107019 10107021 . + . Note "(Autoedit): " CHROMOSOME_IV assembly_tag Finished 10132190 10132193 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10132190 10132193 . + . Note "left end: left end K08F4" CHROMOSOME_IV assembly_tag Clone 10132190 10132193 . + . Note "left end: left end K08F4" CHROMOSOME_IV assembly_tag Finished 10132290 10132293 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10141986 10141989 . + . Note "right end: right end C04G2" CHROMOSOME_IV assembly_tag annotation 10155684 10155685 . + . Note "originally ABI base-called 3 Ts. There are only 2 T peaks in trace, confirmed with data from Ward lab Arizona" CHROMOSOME_IV assembly_tag Clone 10157519 10157522 . + . Note "left end: left end t14g10" CHROMOSOME_IV assembly_tag Finished 10157519 10157522 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10157519 10157522 . + . Note "left end: left end t14g10" CHROMOSOME_IV assembly_tag Finished 10157619 10157622 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10169855 10169858 . + . Note "right end: right end of K08F4" CHROMOSOME_IV assembly_tag Finished 10180335 10180338 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10180335 10180338 . + . Note "left end: K04D7" CHROMOSOME_IV assembly_tag Clone 10180335 10180338 . + . Note "left end: K04D7" CHROMOSOME_IV assembly_tag Finished 10180435 10180438 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10196065 10196068 . + . Note "right end: t14g10" CHROMOSOME_IV assembly_tag Finished 10219030 10219033 . + . Note "Left: T17B5" CHROMOSOME_IV assembly_tag Clone 10219130 10219133 . + . Note "right end: K04D7" CHROMOSOME_IV assembly_tag Finished 10219130 10219133 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10219130 10219133 . + . Note "right end: K04D7" CHROMOSOME_IV assembly_tag Finished 10223301 10223304 . + . Note "Left: C24F3" CHROMOSOME_IV assembly_tag Clone 10223301 10223304 . + . Note "left end: C24F3" CHROMOSOME_IV assembly_tag Clone 10223302 10223304 . + . Note "left end: C24F3" CHROMOSOME_IV assembly_tag Finished 10223401 10223404 . + . Note "Right: T17B5" CHROMOSOME_IV assembly_tag Finished 10237741 10237744 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10237741 10237744 . + . Note "left end: poss. l or r end" CHROMOSOME_IV assembly_tag Clone 10237741 10237744 . + . Note "left end: F01G10" CHROMOSOME_IV assembly_tag Finished 10237841 10237844 . + . Note "Right: C24F3" CHROMOSOME_IV assembly_tag annotation 10273424 10276511 . + . Note "Restriction Digest indicates that\nthere are approximately 800 bases\nmissing from this tandem repeat region" CHROMOSOME_IV assembly_tag Finished 10278651 10278654 . + . Note "Left: Y43C5A" CHROMOSOME_IV assembly_tag Finished 10278751 10278754 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10278751 10278754 . - . Note "right end: F01G10" CHROMOSOME_IV assembly_tag Clone 10278751 10278754 . - . Note "right end: r end F01G10" CHROMOSOME_IV assembly_tag Clone 10296172 10296177 . + . Note "left end: R09E10" CHROMOSOME_IV assembly_tag Finished 10296172 10296177 . - . Note "Left: R09E10" CHROMOSOME_IV assembly_tag Clone 10296172 10296177 . - . Note "left end: R09E10" CHROMOSOME_IV assembly_tag Finished 10296273 10296276 . - . Note "Right: Y43C5A" CHROMOSOME_IV assembly_tag annotation 10312423 10312426 . + . Note "end ot k11e8" CHROMOSOME_IV assembly_tag Finished 10333721 10333726 . - . Note "Left: K11E8" CHROMOSOME_IV assembly_tag Clone 10333821 10333826 . - . Note "right end: R09E10" CHROMOSOME_IV assembly_tag Finished 10333821 10333826 . - . Note "Right: R09E10" CHROMOSOME_IV assembly_tag Finished 10351450 10351453 . + . Note "Left: Y43C5B" CHROMOSOME_IV assembly_tag Clone 10351550 10351553 . - . Note "right end: K11E8" CHROMOSOME_IV assembly_tag Finished 10351550 10351553 . - . Note "Right: K11E8" CHROMOSOME_IV assembly_tag Clone 10351550 10351553 . - . Note "right end: K11E8" CHROMOSOME_IV assembly_tag Clone 10365806 10365811 . + . Note "left end: R11A8" CHROMOSOME_IV assembly_tag Finished 10365806 10365811 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10365806 10365811 . + . Note "left end: R11A8" CHROMOSOME_IV assembly_tag Finished 10365912 10365915 . - . Note "Right: Y43C5B" CHROMOSOME_IV assembly_tag Clone 10393032 10393037 . + . Note "left end: left end of r10h10" CHROMOSOME_IV assembly_tag Finished 10393032 10393037 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10393032 10393037 . + . Note "left end: R10H10" CHROMOSOME_IV assembly_tag Finished 10393132 10393137 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10404463 10404469 . + . Note "right end: right hand end of r11a8" CHROMOSOME_IV assembly_tag Clone 10427531 10427534 . + . Note "left end: left end of F13B12 right hand o/l" CHROMOSOME_IV assembly_tag Finished 10427531 10427534 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10427531 10427534 . + . Note "left end: left end f13b12" CHROMOSOME_IV assembly_tag Clone 10428082 10428087 . + . Note "right end: right end of R10H10" CHROMOSOME_IV assembly_tag Clone 10428082 10428087 . + . Note "right end: right end R10H10" CHROMOSOME_IV assembly_tag Finished 10428082 10428087 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 10436907 10436908 . + . Note "compressed 2 Gs on -ve strand, +ve clone and terminator extended to confirm" CHROMOSOME_IV assembly_tag Clone 10463430 10463433 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 10463430 10463433 . + . Note "left end: left end of F01D4" CHROMOSOME_IV assembly_tag Finished 10463430 10463433 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 10463530 10463533 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10466395 10466398 . + . Note "right end: " CHROMOSOME_IV assembly_tag Finished 10501171 10501174 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10501171 10501174 . - . Note "left end: lh end C02F4" CHROMOSOME_IV assembly_tag Clone 10501171 10501174 . - . Note "left end: lh end C02F4" CHROMOSOME_IV assembly_tag Finished 10501271 10501274 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10503013 10503016 . + . Note "right end: F01D4\n" CHROMOSOME_IV assembly_tag Clone 10540009 10540012 . + . Note "left end: T07G12" CHROMOSOME_IV assembly_tag Clone 10540009 10540012 . + . Note "left end: lh end T07G12" CHROMOSOME_IV assembly_tag Clone 10540009 10540012 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 10540009 10540012 . + . Note "Left: T07G12\n" CHROMOSOME_IV assembly_tag Finished 10540109 10540112 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10546155 10546158 . + . Note "right end: C02F4" CHROMOSOME_IV assembly_tag annotation 10563556 10563592 . + . Note "Single clone across bases 23548 to \n23584 in the inverted repeat region.\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag Finished 10576425 10576428 . + . Note "Left: C43F9" CHROMOSOME_IV assembly_tag Clone 10576425 10576428 . + . Note "left end: C43F9\n" CHROMOSOME_IV assembly_tag Clone 10576425 10576428 . + . Note "left end: C43F9" CHROMOSOME_IV assembly_tag Clone 10576425 10576428 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 10576525 10576528 . + . Note "Right: T07G12" CHROMOSOME_IV assembly_tag Clone 10579083 10579086 . + . Note "right end: T07G12" CHROMOSOME_IV assembly_tag Finished 10609194 10609199 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 10609194 10609199 . + . Note "left end: T07G12" CHROMOSOME_IV assembly_tag Clone 10609194 10609199 . + . Note "left end: R09H10" CHROMOSOME_IV assembly_tag Finished 10609294 10609297 . - . Note "Right: C43F9" CHROMOSOME_IV assembly_tag Clone 10638288 10638291 . + . Note "left end: F56C4" CHROMOSOME_IV assembly_tag Clone 10638288 10638291 . + . Note "left end: F56C4" CHROMOSOME_IV assembly_tag Finished 10638288 10638291 . + . Note "Left: F56C4" CHROMOSOME_IV assembly_tag Clone 10643471 10643476 . + . Note "right end: R09H10" CHROMOSOME_IV assembly_tag Finished 10643471 10643476 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 10662269 10662272 . + . Note "Left: K08C7" CHROMOSOME_IV assembly_tag Clone 10662269 10662272 . + . Note "left end: Start of K08C7" CHROMOSOME_IV assembly_tag Clone 10662269 10662272 . + . Note "left end: K08C7" CHROMOSOME_IV assembly_tag Finished 10662369 10662372 . + . Note "Right: F56C4" CHROMOSOME_IV assembly_tag Clone 10676636 10676639 . + . Note "right end: End of F56C4" CHROMOSOME_IV assembly_tag Clone 10696301 10696306 . + . Note "left end: Start of R102" CHROMOSOME_IV assembly_tag Finished 10696301 10696306 . + . Note "Left: R102" CHROMOSOME_IV assembly_tag Clone 10696301 10696306 . + . Note "left end: Start of R102" CHROMOSOME_IV assembly_tag Finished 10696403 10696406 . + . Note "Right: K08C7" CHROMOSOME_IV assembly_tag Clone 10701543 10701546 . + . Note "right end: End of K08C7" CHROMOSOME_IV assembly_tag Finished 10730376 10730381 . + . Note "Left: ZC168" CHROMOSOME_IV assembly_tag Clone 10730376 10730381 . + . Note "left end: Start of ZC168" CHROMOSOME_IV assembly_tag Clone 10730376 10730381 . + . Note "left end: Start of ZC168" CHROMOSOME_IV assembly_tag Finished 10730488 10730491 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 10735912 10735917 . + . Note "right end: End of R102" CHROMOSOME_IV assembly_tag Clone 10756579 10756582 . + . Note "left end: T25B9" CHROMOSOME_IV assembly_tag Clone 10756579 10756582 . + . Note "left end: Start of T25B9" CHROMOSOME_IV assembly_tag Finished 10756579 10756582 . + . Note "Left: T25B9" CHROMOSOME_IV assembly_tag Finished 10756679 10756682 . + . Note "Right: ZC168" CHROMOSOME_IV assembly_tag Clone 10769547 10769552 . + . Note "right end: ZC168" CHROMOSOME_IV assembly_tag Clone 10782699 10782702 . + . Note "left end: C06G8" CHROMOSOME_IV assembly_tag Finished 10782699 10782702 . + . Note "Left: C06G8" CHROMOSOME_IV assembly_tag Clone 10782699 10782702 . + . Note "left end: C06G8" CHROMOSOME_IV assembly_tag Finished 10782799 10782802 . + . Note "Right: T25B9" CHROMOSOME_IV assembly_tag Clone 10791343 10791346 . + . Note "right end: End of T25B9" CHROMOSOME_IV assembly_tag Clone 10813736 10813741 . + . Note "left end: R13" CHROMOSOME_IV assembly_tag Finished 10813736 10813741 . + . Note "Left: R13" CHROMOSOME_IV assembly_tag Clone 10813736 10813741 . + . Note "left end: R13" CHROMOSOME_IV assembly_tag Finished 10813838 10813841 . + . Note "Right: C06G8" CHROMOSOME_IV assembly_tag Clone 10825027 10825030 . + . Note "right end: C06G8" CHROMOSOME_IV assembly_tag Clone 10847807 10847810 . + . Note "left end: T11G6" CHROMOSOME_IV assembly_tag Finished 10847807 10847810 . + . Note "Left: T11G6" CHROMOSOME_IV assembly_tag Clone 10847807 10847810 . + . Note "left end: T11G6" CHROMOSOME_IV assembly_tag Finished 10847907 10847910 . + . Note "Right: R13" CHROMOSOME_IV assembly_tag annotation 10854897 10854956 . + . Note "Region of TA dinucleotide repeat. Some M13 clones vary in length of repeat. The clone with the highest number of repeats is given." CHROMOSOME_IV assembly_tag Clone 10855443 10855448 . + . Note "right end: R13" CHROMOSOME_IV assembly_tag Clone 10877164 10877167 . + . Note "left end: F13E9" CHROMOSOME_IV assembly_tag Finished 10877164 10877167 . + . Note "Left: F13E9" CHROMOSOME_IV assembly_tag Clone 10877164 10877167 . + . Note "left end: F13E9" CHROMOSOME_IV assembly_tag Finished 10877264 10877267 . + . Note "Right: T11G6" CHROMOSOME_IV assembly_tag Clone 10886493 10886496 . + . Note "right end: T11G6" CHROMOSOME_IV assembly_tag Finished 10911134 10911137 . + . Note "Left: ZK596" CHROMOSOME_IV assembly_tag Clone 10911134 10911137 . + . Note "left end: ZK596" CHROMOSOME_IV assembly_tag Clone 10911134 10911137 . + . Note "left end: ZK596" CHROMOSOME_IV assembly_tag Finished 10911234 10911237 . + . Note "Right: F13E9" CHROMOSOME_IV assembly_tag Clone 10919242 10919245 . + . Note "right end: F13E9" CHROMOSOME_IV assembly_tag Finished 10921369 10921372 . + . Note "Left: ZK593" CHROMOSOME_IV assembly_tag Clone 10921369 10921372 . + . Note "left end: ZK593" CHROMOSOME_IV assembly_tag Clone 10921369 10921372 . + . Note "left end: ZK593" CHROMOSOME_IV assembly_tag Finished 10921469 10921472 . + . Note "Right: ZK596" CHROMOSOME_IV assembly_tag Clone 10944404 10944407 . + . Note "right end: ZK596" CHROMOSOME_IV assembly_tag annotation 10950186 10950200 . + . Note "There is some dicrepancy between M13 clones across this region. 3 clones have 9 As and 6 Ts and a further 4 clones have 10 As and 5 Ts (in both cases distributed over both strands and reproducible after terminator chemistry). " CHROMOSOME_IV assembly_tag Finished 10954767 10954770 . + . Note "Left: Y69E1A" CHROMOSOME_IV assembly_tag Clone 10954863 10954866 . + . Note "right end: ZK593" CHROMOSOME_IV assembly_tag Finished 10954863 10954866 . + . Note "Right: ZK593" CHROMOSOME_IV assembly_tag Clone 10954863 10954866 . - . Note "right end: ZK593" CHROMOSOME_IV assembly_tag annotation 10955005 10957852 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[x] OtherAdd a comment here -Inverted repeat section covering approximately 2.8Kb containing two areas of tandem repeat of unknown size. Due to the nature of the tandem repeats orientation of the internal loop may be incorrect." CHROMOSOME_IV assembly_tag annotation 10955303 10955338 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown, contained within a large inverted repeat.Approximately 0.7Kb of a ATCTGATCCTTAAGCTCCGAAGGATCAGAAGGGTACCTCCTGGTG motif assembled with some base differences and one forced join. Data suggests that the tandem repeat should cover a larger area." CHROMOSOME_IV assembly_tag annotation 10957616 10957638 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown, contained within a large inverted repeat.Approximately 0.6Kb of a TGATCCTTCGGAGCTTAAGGATCAGATCACCAGGAGGTACCCTTC motif assembled with some base differences and one forced join. Data suggests that the tandem repeat should cover a larger area." CHROMOSOME_IV assembly_tag annotation 10988773 10989005 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[x] Other\nAdd a comment here -\nSequence derived from a single sonicated PUC clone (uq02e3)" CHROMOSOME_IV assembly_tag Clone 10991721 10991726 . + . Note "left end: Y43E12" CHROMOSOME_IV assembly_tag Finished 10991721 10991726 . + . Note "Left: Y43E12A" CHROMOSOME_IV assembly_tag Clone 10991721 10991726 . + . Note "left end: Y43E12" CHROMOSOME_IV assembly_tag Finished 10991821 10991824 . - . Note "Right: Y69E1A" CHROMOSOME_IV assembly_tag Clone 10995322 10995327 . - . Note "right end: Y69E1" CHROMOSOME_IV assembly_tag Clone 11002572 11002575 . + . Note "left end: Clone left end of F13H10" CHROMOSOME_IV assembly_tag Finished 11002572 11002575 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11002572 11002575 . + . Note "left end: F13H10" CHROMOSOME_IV assembly_tag Finished 11002674 11002677 . - . Note "Right: Y43E12A" CHROMOSOME_IV assembly_tag annotation 11014283 11014292 . + . Note "Single clone PCR product sized over this region to confirm ." CHROMOSOME_IV assembly_tag Finished 11034772 11034775 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11034772 11034775 . + . Note "left end: Clone left end of F36H1" CHROMOSOME_IV assembly_tag Clone 11034772 11034775 . + . Note "left end: F36H1" CHROMOSOME_IV assembly_tag Finished 11034884 11034891 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11036762 11036765 . + . Note "right end: F13H10" CHROMOSOME_IV assembly_tag annotation 11045157 11047677 . + . Note "multiple tandem copies of 79mer. Restriction data from cosmid DNA suggests up to 400bp missing from this region. Because of the repetitive nature of this sequence base accuracy cannot be guarenteed. The size of this region has not been predicted using non-cloned genomic DNA." CHROMOSOME_IV assembly_tag Finished 11073280 11073283 . + . Note "Left: Y5F2A" CHROMOSOME_IV assembly_tag Clone 11073376 11073379 . + . Note "right end: F36H1" CHROMOSOME_IV assembly_tag Finished 11073376 11073379 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11073376 11073379 . - . Note "right end: F36H1" CHROMOSOME_IV assembly_tag annotation 11082523 11083969 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 1.4Kb of AGACTACCT motif assembled in with some base differences and 1 forced join." CHROMOSOME_IV assembly_tag annotation 11083970 11087518 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[X] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 3.5Kb of TTATGGAAAAGTGGCTCTAGAGCCACTAGAAATACCAGT motif assembled in with some base differences, 2 forced joins and 1 single clone area." CHROMOSOME_IV assembly_tag Finished 11091572 11091575 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11091572 11091575 . + . Note "left end: M7" CHROMOSOME_IV assembly_tag Clone 11091572 11091575 . + . Note "left end: Left Hand End M7" CHROMOSOME_IV assembly_tag Finished 11091673 11091676 . - . Note "Right: Y5F2A" CHROMOSOME_IV assembly_tag annotation 11100977 11100984 . + . Note "One read says 7 T's possibly a point mutation. Edited to largest number." CHROMOSOME_IV assembly_tag Clone 11114929 11114932 . + . Note "left end: Left Hand End T05E11" CHROMOSOME_IV assembly_tag Clone 11114929 11114932 . + . Note "left end: T05E11" CHROMOSOME_IV assembly_tag Finished 11114929 11114932 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11115036 11115041 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11132532 11132535 . + . Note "right end: M7" CHROMOSOME_IV assembly_tag Finished 11139372 11139375 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11139372 11139375 . + . Note "left end: F01G4" CHROMOSOME_IV assembly_tag Clone 11139372 11139375 . + . Note "left end: F01G4" CHROMOSOME_IV assembly_tag Finished 11139477 11139482 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11156494 11156497 . + . Note "right end: T05E11" CHROMOSOME_IV assembly_tag Clone 11160156 11160159 . + . Note "left end: C08F8" CHROMOSOME_IV assembly_tag Finished 11160156 11160159 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11160156 11160159 . + . Note "left end: C08F8" CHROMOSOME_IV assembly_tag Finished 11160256 11160262 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11174149 11174152 . + . Note "right end: F01G4" CHROMOSOME_IV assembly_tag Finished 11192726 11192731 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11192726 11192731 . + . Note "left end: R07H5" CHROMOSOME_IV assembly_tag Clone 11192726 11192731 . + . Note "left end: R07H5" CHROMOSOME_IV assembly_tag Finished 11192825 11192832 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11202313 11202316 . + . Note "right end: C08F8" CHROMOSOME_IV assembly_tag Clone 11226423 11226426 . + . Note "left end: C29F4" CHROMOSOME_IV assembly_tag Finished 11226423 11226426 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11226423 11226426 . + . Note "left end: C29F4" CHROMOSOME_IV assembly_tag Finished 11226524 11226527 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11227415 11227440 . + . Note "C29F4 reads 26 or 27 Ts. R07H5 seems to read 25" CHROMOSOME_IV assembly_tag Clone 11232529 11232534 . + . Note "right end: Ro7h5" CHROMOSOME_IV assembly_tag Clone 11243719 11243722 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 11243719 11243722 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11243719 11243722 . + . Note "left end: C05C12" CHROMOSOME_IV assembly_tag Finished 11243818 11243824 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11267220 11267223 . + . Note "right end: C29F4" CHROMOSOME_IV assembly_tag Finished 11272707 11272710 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11272707 11272710 . + . Note "left end: F54D1" CHROMOSOME_IV assembly_tag Clone 11272707 11272710 . + . Note "left end: F54D1" CHROMOSOME_IV assembly_tag Finished 11272810 11272814 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11287812 11287815 . - . Note "right end: C05C12" CHROMOSOME_IV assembly_tag Clone 11305865 11305868 . + . Note "left end: B0035" CHROMOSOME_IV assembly_tag Finished 11305865 11305868 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11305865 11305868 . + . Note "left end: B0035" CHROMOSOME_IV assembly_tag Finished 11305969 11305972 . - . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11309487 11309489 . + . Note "point mutation wn30g5.s1/.s1t" CHROMOSOME_IV assembly_tag Clone 11310785 11310788 . + . Note "right end: F54D1" CHROMOSOME_IV assembly_tag Finished 11345234 11345237 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11345234 11345237 . + . Note "left end: F54E12" CHROMOSOME_IV assembly_tag Clone 11345238 11345242 . + . Note "left end: F52E11" CHROMOSOME_IV assembly_tag Finished 11345343 11345347 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11351487 11351487 . + . Note "..some reads read G\nand some reads read A.\nDifferent species??\nMost read G therefore changed to G." CHROMOSOME_IV assembly_tag annotation 11357200 11357276 . + . Note "Single clone area.\nTerminator runs accross area and\nall the bases are clear." CHROMOSOME_IV assembly_tag Clone 11359007 11359010 . + . Note "left end: T01G1" CHROMOSOME_IV assembly_tag Finished 11359007 11359010 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11359007 11359010 . + . Note "left end: T01G1" CHROMOSOME_IV assembly_tag Finished 11359107 11359110 . - . Note "Right: " CHROMOSOME_IV assembly_tag annotation 11374265 11374267 . - . Note "single clone area. base accuracy \ncannot be guaranteed." CHROMOSOME_IV assembly_tag Clone 11382877 11382880 . + . Note "left end: H02I12" CHROMOSOME_IV assembly_tag Finished 11382877 11382880 . + . Note "Left: H02I12" CHROMOSOME_IV assembly_tag Clone 11382877 11382880 . + . Note "left end: H02I12" CHROMOSOME_IV assembly_tag Clone 11382877 11382880 . - . Note "right end: F54E12" CHROMOSOME_IV assembly_tag Finished 11382976 11382981 . - . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11395218 11395221 . - . Note "right end: T01G1 No RHE." CHROMOSOME_IV assembly_tag Clone 11416960 11416963 . + . Note "left end: Clone left end of F22B3" CHROMOSOME_IV assembly_tag Finished 11416960 11416963 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11416960 11416963 . - . Note "right end: H02I12" CHROMOSOME_IV assembly_tag Finished 11416960 11416963 . - . Note "Right: H02I12" CHROMOSOME_IV assembly_tag Finished 11447327 11447330 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11447327 11447330 . + . Note "left end: Clone left end of C10C6" CHROMOSOME_IV assembly_tag Clone 11447327 11447330 . + . Note "left end: C10C6" CHROMOSOME_IV assembly_tag Finished 11447433 11447439 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11455651 11455654 . - . Note "right end: F22B3" CHROMOSOME_IV assembly_tag Finished 11491015 11491018 . + . Note "Left: H21P03" CHROMOSOME_IV assembly_tag Clone 11491111 11491114 . - . Note "right end: C10C6" CHROMOSOME_IV assembly_tag Finished 11491111 11491114 . - . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11491111 11491114 . - . Note "right end: C10C6" CHROMOSOME_IV assembly_tag Clone 11516508 11516511 . + . Note "left end: M04B2" CHROMOSOME_IV assembly_tag Clone 11516508 11516511 . + . Note "left end: M04B2" CHROMOSOME_IV assembly_tag Finished 11516508 11516511 . + . Note "Left: M04B2" CHROMOSOME_IV assembly_tag cosmid 11516508 11516511 . + . Note "vector: pjb8" CHROMOSOME_IV assembly_tag cosmid 11516508 11516511 . - . Note "vector: pjb8" CHROMOSOME_IV assembly_tag cosmid 11516508 11516513 . - . Note "vector: " CHROMOSOME_IV assembly_tag Finished 11516604 11516607 . - . Note "Right: H21P03" CHROMOSOME_IV assembly_tag Finished 11555476 11555479 . + . Note "Left: F12F6" CHROMOSOME_IV assembly_tag Clone 11555476 11555479 . + . Note "left end: F12F6" CHROMOSOME_IV assembly_tag Clone 11555476 11555479 . + . Note "left end: F12F6" CHROMOSOME_IV assembly_tag compression 11555927 11555927 . + . CHROMOSOME_IV assembly_tag resolved 11556628 11556632 . - . Note "compression: " CHROMOSOME_IV assembly_tag compression 11556640 11556640 . + . CHROMOSOME_IV assembly_tag compression 11557390 11557394 . - . CHROMOSOME_IV assembly_tag compression 11557399 11557399 . + . CHROMOSOME_IV assembly_tag compression 11557607 11557612 . - . CHROMOSOME_IV assembly_tag compression 11557616 11557623 . - . CHROMOSOME_IV assembly_tag comment 11558762 11559077 . + . Note "?really wn57a3" CHROMOSOME_IV assembly_tag comment 11558943 11559215 . + . Note "?really wn55e6" CHROMOSOME_IV assembly_tag comment 11559361 11559361 . + . Note "?" CHROMOSOME_IV assembly_tag Finished 11559878 11559881 . - . Note "Right: M04B2" CHROMOSOME_IV assembly_tag Clone 11559878 11559881 . - . Note "right end: M04B2" CHROMOSOME_IV assembly_tag annotation 11572154 11572502 . + . Note "this region is covered by cosmid PCRs\nonly" CHROMOSOME_IV assembly_tag annotation 11572208 11572212 . + . Note "could be only 4 As - cosmid PCR only \nhere." CHROMOSOME_IV assembly_tag annotation 11572302 11572302 . + . Note "could be a T - only cosmid PCR here" CHROMOSOME_IV assembly_tag Clone 11576572 11576575 . + . Note "left end: F40F11" CHROMOSOME_IV assembly_tag Finished 11599381 11599384 . + . Note "Left: F40F11" CHROMOSOME_IV assembly_tag Clone 11599481 11599484 . - . Note "left end: F12F6" CHROMOSOME_IV assembly_tag Finished 11599481 11599484 . - . Note "Right: F12F6" CHROMOSOME_IV assembly_tag Clone 11599481 11599484 . - . Note "right end: F12F6" CHROMOSOME_IV assembly_tag Finished 11615498 11615501 . - . Note "Right: F40F11" CHROMOSOME_IV assembly_tag Clone 11615498 11615501 . - . Note "right end: F40F11" CHROMOSOME_IV assembly_tag Finished 11630523 11630526 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11630523 11630526 . + . Note "left end: F58B3 " CHROMOSOME_IV assembly_tag Clone 11652358 11652361 . + . Note "left end: ZK809" CHROMOSOME_IV assembly_tag Clone 11652358 11652361 . + . Note "left end: ZK809" CHROMOSOME_IV assembly_tag Finished 11652358 11652361 . + . Note "Left: ZK809" CHROMOSOME_IV assembly_tag Finished 11652458 11652470 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11677818 11677821 . + . Note "left end: ZK792" CHROMOSOME_IV assembly_tag Clone 11677818 11677821 . + . Note "left end: ZK792" CHROMOSOME_IV assembly_tag Finished 11677818 11677821 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11677914 11677917 . + . Note "Right: ZK809" CHROMOSOME_IV assembly_tag Clone 11692935 11692938 . + . Note "right end: ZK809" CHROMOSOME_IV assembly_tag Clone 11707981 11707984 . + . Note "left end: T22B3" CHROMOSOME_IV assembly_tag Clone 11707981 11707984 . + . Note "left end: Left Hand End T22B3" CHROMOSOME_IV assembly_tag Finished 11707981 11707984 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11708087 11708092 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11715188 11715191 . + . Note "right end: Right Hand End ZK792" CHROMOSOME_IV assembly_tag Clone 11718123 11718126 . + . Note "left end: Left Hand End K01A6" CHROMOSOME_IV assembly_tag Finished 11718123 11718126 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11718123 11718126 . + . Note "left end: Clone left end of K01A6" CHROMOSOME_IV assembly_tag Finished 11718226 11718231 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11748507 11748510 . + . Note "right end: Clone right end of T22B3" CHROMOSOME_IV assembly_tag Clone 11756476 11756479 . + . Note "left end: Clone left end of T12A7" CHROMOSOME_IV assembly_tag Finished 11756476 11756479 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11756476 11756479 . + . Note "left end: Left Hand End T12A7" CHROMOSOME_IV assembly_tag Finished 11756578 11756585 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11757856 11757859 . + . Note "right end: Right Hand End K01A6" CHROMOSOME_IV assembly_tag Finished 11795592 11795596 . + . Note "Left: H01G02" CHROMOSOME_IV assembly_tag Clone 11795692 11795695 . + . Note "right end: " CHROMOSOME_IV assembly_tag Finished 11795692 11795695 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11795692 11795695 . + . Note "right end: T12A7" CHROMOSOME_IV assembly_tag Clone 11795692 11795695 . + . Note "right end: Right Hand End T12A7" CHROMOSOME_IV assembly_tag annotation 11803200 11803270 . + . Note "single clone area - base accuracy \ncannot be guarenteed" CHROMOSOME_IV assembly_tag annotation 11803302 11803302 . + . Note "this base could be A or T - fosmid\nPCR is unclear." CHROMOSOME_IV assembly_tag Finished 11819398 11819401 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11819398 11819401 . + . Note "left end: M117" CHROMOSOME_IV assembly_tag Clone 11819398 11819401 . + . Note "left end: M117" CHROMOSOME_IV assembly_tag Finished 11819501 11819506 . - . Note "Right: H01G02" CHROMOSOME_IV assembly_tag Clone 11847305 11847308 . + . Note "left end: F38H4" CHROMOSOME_IV assembly_tag Clone 11847305 11847308 . + . Note "left end: F38H4" CHROMOSOME_IV assembly_tag Finished 11847305 11847308 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11847407 11847411 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11859074 11859077 . + . Note "right end: M117" CHROMOSOME_IV assembly_tag Finished 11874990 11874993 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11874990 11874993 . + . Note "left end: C29E6" CHROMOSOME_IV assembly_tag Clone 11874990 11874993 . + . Note "left end: C29E6" CHROMOSOME_IV assembly_tag Finished 11875110 11875113 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11884354 11884357 . + . Note "right end: F38H4" CHROMOSOME_IV assembly_tag annotation 11899296 11899343 . + . Note "Sequence taken from only a single clone over this region. An ECOR1 digest across this region produces a fragment size to suggest the assembly of this cosmid is correct" CHROMOSOME_IV assembly_tag Finished 11919500 11919503 . + . Note "Left: VZK822l" CHROMOSOME_IV assembly_tag Clone 11919600 11919603 . + . Note "right end: C29E6" CHROMOSOME_IV assembly_tag Finished 11919600 11919603 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11919600 11919603 . - . Note "right end: C29E6" CHROMOSOME_IV assembly_tag annotation 11923023 11923031 . + . Note "uncertain number of A's, edited to the\nlongest run with several representatives." CHROMOSOME_IV assembly_tag annotation 11924019 11924028 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_IV assembly_tag annotation 11926525 11926533 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_IV assembly_tag Finished 11927415 11927418 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11927415 11927418 . + . Note "left end: ZK822" CHROMOSOME_IV assembly_tag Clone 11927415 11927418 . + . Note "left end: ZK822" CHROMOSOME_IV assembly_tag Finished 11927514 11927517 . - . Note "Right: VZK822l" CHROMOSOME_IV assembly_tag repeat 11946427 11946456 . + . Note "Repeats with contig wp19e5.s1t, offset 41" CHROMOSOME_IV assembly_tag repeat 11946458 11946496 . + . Note "Repeats with contig wp19e5.s1t, offset 1" CHROMOSOME_IV assembly_tag Clone 11953274 11953277 . + . Note "left end: ZK829" CHROMOSOME_IV assembly_tag Clone 11953274 11953277 . + . Note "left end: ZK829" CHROMOSOME_IV assembly_tag Finished 11953274 11953277 . + . Note "Left: " CHROMOSOME_IV assembly_tag Finished 11953374 11953384 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11961079 11961082 . + . Note "right end: ZK822" CHROMOSOME_IV assembly_tag Finished 11985699 11985702 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 11985699 11985702 . + . Note "left end: ZK617" CHROMOSOME_IV assembly_tag Clone 11985699 11985702 . + . Note "left end: ZK617" CHROMOSOME_IV assembly_tag Finished 11985799 11985811 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 11989323 11989326 . + . Note "right end: ZK829" CHROMOSOME_IV assembly_tag Finished 12030829 12030832 . + . Note "Left: Y64F11A" CHROMOSOME_IV assembly_tag Clone 12030925 12030928 . + . Note "right end: ZK617" CHROMOSOME_IV assembly_tag Finished 12030925 12030928 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12030925 12030928 . + . Note "right end: ZK617" CHROMOSOME_IV assembly_tag annotation 12034144 12036499 . + . CHROMOSOME_IV assembly_tag Finished 12036400 12036403 . + . Note "Left: Y40D7A" CHROMOSOME_IV assembly_tag Clone 12036400 12036405 . + . Note "left end: Y40D7" CHROMOSOME_IV assembly_tag Clone 12036400 12036405 . + . Note "left end: Y40D7" CHROMOSOME_IV assembly_tag annotation 12036400 12037038 . + . Note "Overlap with Y64F11 consists entirely \nof a 32bp tandem repeat sequence.\nWe are unable to tell whether there are\nany copies of repeat missing from this \nassembly." CHROMOSOME_IV assembly_tag Finished 12036496 12036499 . + . Note "Right: Y64F11A" CHROMOSOME_IV assembly_tag Clone 12036592 12036597 . + . Note "right end: Y64F11" CHROMOSOME_IV assembly_tag Finished 12038813 12038813 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12038813 12038816 . + . Note "left end: Left hand end of T12G3." CHROMOSOME_IV assembly_tag Clone 12038813 12038816 . + . Note "left end: T12G3" CHROMOSOME_IV assembly_tag Finished 12038909 12038912 . + . Note "Right: Y40D7A" CHROMOSOME_IV assembly_tag annotation 12049593 12049623 . + . Note "These 31 bases are in an inverted repeat region. They only have one strand covering them which is terminated." CHROMOSOME_IV assembly_tag annotation 12060454 12060459 . + . Note "Reads coming through run of Gs second set of Gs have 6 clear Gs these 6 bases are unclear region complicated by possible hairpin between GAA and following TTC regions, edited to best read." CHROMOSOME_IV assembly_tag Finished 12064958 12064958 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12064958 12064961 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 12064958 12064961 . + . Note "left end: Left hand end of K08E4." CHROMOSOME_IV assembly_tag Clone 12064958 12064961 . + . Note "left end: Left end of K08E4" CHROMOSOME_IV assembly_tag Clone 12064974 12064974 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 12065058 12065058 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12073372 12073375 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 12073372 12073375 . + . Note "right end: Right end of T12G3" CHROMOSOME_IV assembly_tag annotation 12074754 12074789 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12083101 12083173 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12083514 12083566 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12084582 12084731 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12085183 12085217 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12085699 12085728 . + . Note "single stranded with terminators" CHROMOSOME_IV assembly_tag annotation 12086449 12086667 . + . Note "single stranded with terminators" CHROMOSOME_IV assembly_tag annotation 12086668 12086806 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12086951 12087091 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12087092 12087327 . + . Note "single stranded with term" CHROMOSOME_IV assembly_tag annotation 12087328 12087526 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12087527 12087793 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12087794 12087970 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12087971 12088016 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12088856 12088944 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12090455 12090593 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12090855 12091096 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12091097 12091280 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12091281 12091413 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12091414 12091433 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag Finished 12092100 12092100 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12092100 12092103 . + . Note "left end: F11A10" CHROMOSOME_IV assembly_tag Clone 12092100 12092103 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 12092100 12092103 . + . Note "left end: Left end of F11A10" CHROMOSOME_IV assembly_tag Finished 12092205 12092205 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12101046 12101049 . + . Note "right end: K08F4" CHROMOSOME_IV assembly_tag Finished 12111616 12111616 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12111616 12111619 . + . Note "left end: M18" CHROMOSOME_IV assembly_tag Clone 12111616 12111619 . + . Note "left end: M18" CHROMOSOME_IV assembly_tag Finished 12111719 12111719 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12134812 12134815 . + . Note "right end: F11A10" CHROMOSOME_IV assembly_tag Finished 12138054 12138054 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12138054 12138057 . + . Note "left end: Left hand end of B0001. " CHROMOSOME_IV assembly_tag Clone 12138054 12138057 . + . Note "left end: B0001" CHROMOSOME_IV assembly_tag Finished 12138157 12138157 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12148059 12148062 . + . Note "right end: Right hand end of M18." CHROMOSOME_IV assembly_tag repeat 12149674 12149767 . + . CHROMOSOME_IV assembly_tag repeat 12149795 12149880 . + . CHROMOSOME_IV assembly_tag annotation 12149805 12149805 . + . Note "Unclear as part of inverted repeat." CHROMOSOME_IV assembly_tag annotation 12149810 12149810 . + . Note "Unclear base part of inverted repeat." CHROMOSOME_IV assembly_tag Finished 12177366 12177366 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12177366 12177369 . + . Note "right end: B0001" CHROMOSOME_IV assembly_tag Clone 12177366 12177369 . + . Note "left end: F20B10" CHROMOSOME_IV assembly_tag Clone 12177366 12177369 . + . Note "right end: Right hand end of B0001." CHROMOSOME_IV assembly_tag Finished 12177469 12177469 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12180844 12180849 . + . Note "tandem repeat size agrees with pcr check and restriction digest. Some templates show variation in individual bases " CHROMOSOME_IV assembly_tag annotation 12181593 12181593 . + . Note "variation between copies of the repeat some templates call T" CHROMOSOME_IV assembly_tag annotation 12181745 12181745 . + . Note "variation between copies of repeat some templates call TTTT edited to TTCT" CHROMOSOME_IV assembly_tag Clone 12184398 12184403 . + . Note "right end: ZC197" CHROMOSOME_IV assembly_tag annotation 12186498 12186498 . + . Note "this template only shows 10 A'sand it could be in either copy of the repeat" CHROMOSOME_IV assembly_tag Finished 12199176 12199176 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12199176 12199179 . + . Note "left end: F35G2" CHROMOSOME_IV assembly_tag Clone 12199176 12199179 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 12199176 12199179 . + . Note "left end: left end of F35G2" CHROMOSOME_IV assembly_tag Finished 12199279 12199279 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12203987 12203987 . + . Note "yp93d7 has 2 C's suspect a point mutation as no other trace agrees" CHROMOSOME_IV assembly_tag Clone 12214396 12214399 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 12214396 12214399 . + . Note "right end: F20B10" CHROMOSOME_IV assembly_tag annotation 12217341 12217388 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12218525 12218708 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12220079 12220175 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12220176 12220226 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12220998 12221218 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12221219 12221317 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12223543 12223680 . + . Note "single stranded but terminated" CHROMOSOME_IV assembly_tag annotation 12224729 12224774 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12224775 12224792 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12225522 12225596 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12225597 12225631 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag annotation 12228055 12228105 . + . Note "single stranded with terminator" CHROMOSOME_IV assembly_tag Clone 12234551 12234554 . + . Note "right end: F35G2" CHROMOSOME_IV assembly_tag Clone 12234551 12234554 . + . Note "right end: " CHROMOSOME_IV assembly_tag Finished 12234554 12234554 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 12329756 12329759 . + . Note "Left: Y39C12B" CHROMOSOME_IV assembly_tag annotation 12329756 12330046 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[x] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -Tandem repeat of unknown size.\n" CHROMOSOME_IV assembly_tag Finisher 12329796 12329796 . + . Note "comment: Changed back to a T after autoedit edited it to a A." CHROMOSOME_IV assembly_tag Clone 12329852 12329855 . + . Note "right end: K09E10" CHROMOSOME_IV assembly_tag Finished 12329947 12329947 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12329947 12329950 . + . Note "left end: F19B6" CHROMOSOME_IV assembly_tag Clone 12329947 12329950 . + . Note "left end: F19B6" CHROMOSOME_IV assembly_tag annotation 12329947 12329950 . + . Note "beginnning of cosmid marks the beginning of a tandem repeat. 94bp repeat unit. 10 copies assembled, restriction digest indormation suggests another 7 copies exist. This repeat is however unstable in the cosmid, so this number is not reliable" CHROMOSOME_IV assembly_tag Finished 12330043 12330046 . + . Note "Right: Y39C12B" CHROMOSOME_IV assembly_tag annotation 12330938 12330942 . + . Note "repeat boundary" CHROMOSOME_IV assembly_tag annotation 12332656 12332661 . + . Note "beginning of tandem repeat 218bp elemant corresponding to heavy 220bp band on finger-print. 20.5 copies assembled Restricion digest information suggests an unstable repeat element between (of which 150bp is flanking unique), suggesting approximately 28 copies. Obviously, the fact that the repeat is unstable makes this estimate in itself inaccurate" CHROMOSOME_IV assembly_tag annotation 12337226 12337237 . + . Note "end of tandem repeat" CHROMOSOME_IV assembly_tag Finished 12359392 12359392 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12359392 12359397 . + . Note "left end: ZC518" CHROMOSOME_IV assembly_tag Clone 12359392 12359397 . + . Note "left end: ZC518" CHROMOSOME_IV assembly_tag Finished 12359494 12359494 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12367136 12367139 . + . Note "right end: F19B6" CHROMOSOME_IV assembly_tag Finished 12381618 12381618 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12381618 12381621 . + . Note "left end: start of F28D1 the overlap between this consensus and the previously submitted ZC518 is 550bp instead of the usual 100bp in order to provide data about the F28D1 cloning site" CHROMOSOME_IV assembly_tag annotation 12382272 12382272 . + . Note "first F28D1 read falls here, GATC must be to left" CHROMOSOME_IV assembly_tag Finished 12382272 12382272 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12392180 12392184 . + . Note "end of last ZC518 read, cloning site position unknown" CHROMOSOME_IV assembly_tag Finished 12417814 12417814 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12417814 12417817 . + . Note "left end: F08G5" CHROMOSOME_IV assembly_tag Clone 12417814 12417817 . + . Note "left end: F08G5" CHROMOSOME_IV assembly_tag Clone 12417814 12417817 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 12417916 12417916 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12418535 12418538 . + . Note "right end: F28D1" CHROMOSOME_IV assembly_tag annotation 12442005 12442007 . + . Note "best-guess editing due to unclear sequence as a result of an inverted repeat. All subsequent ?annotation? tags over the next 100 bases mark similarly unclear calls" CHROMOSOME_IV assembly_tag annotation 12442009 12442011 . + . CHROMOSOME_IV assembly_tag annotation 12442048 12442052 . + . CHROMOSOME_IV assembly_tag annotation 12442067 12442067 . + . CHROMOSOME_IV assembly_tag annotation 12442074 12442076 . + . CHROMOSOME_IV assembly_tag annotation 12442077 12442084 . + . CHROMOSOME_IV assembly_tag annotation 12442138 12442138 . + . Note "last unclear base. All calls after this region are fine" CHROMOSOME_IV assembly_tag Finished 12450493 12450493 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12450493 12450496 . + . Note "left end: C25G4" CHROMOSOME_IV assembly_tag Clone 12450493 12450496 . + . Note "left end: C25G4" CHROMOSOME_IV assembly_tag Finished 12450597 12450597 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12457937 12457940 . + . Note "right end: F08G5" CHROMOSOME_IV assembly_tag annotation 12463318 12463319 . + . CHROMOSOME_IV assembly_tag Finished 12484095 12484098 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12484095 12484098 . + . Note "left end: T04A11" CHROMOSOME_IV assembly_tag Clone 12484095 12484098 . + . Note "left end: T04A11 clone left" CHROMOSOME_IV assembly_tag Finished 12484198 12484198 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12495963 12495970 . + . CHROMOSOME_IV assembly_tag Clone 12516293 12516296 . + . Note "left end: F53B2 clone left" CHROMOSOME_IV assembly_tag Finished 12523277 12523277 . + . Note "Left: " CHROMOSOME_IV assembly_tag comment 12523279 12523285 . + . Note "diverges here due to karens repeat" CHROMOSOME_IV assembly_tag Clone 12523374 12523377 . + . Note "left end: T04A11 clone right" CHROMOSOME_IV assembly_tag Clone 12523374 12523377 . + . Note "right end: T04A11" CHROMOSOME_IV assembly_tag Finished 12523374 12523377 . + . Note "Right: " CHROMOSOME_IV assembly_tag comment 12544914 12544921 . + . Note "these 2 yr14 reads diverge but there aren't ment to be in this cosmid" CHROMOSOME_IV assembly_tag Finished 12556651 12556651 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12556750 12556753 . + . Note "right end: F53B2" CHROMOSOME_IV assembly_tag Finished 12556753 12556753 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12556751 12556754 . - . Note "right end: F53B2" CHROMOSOME_IV assembly_tag annotation 12565805 12565805 . + . Note "two clones call c consensus is t" CHROMOSOME_IV assembly_tag annotation 12569502 12569502 . + . Note "two clones call tt consensus calls ct" CHROMOSOME_IV assembly_tag annotation 12572583 12572583 . + . Note "beginning of K08E7 finished sequence.\nNo overlap data was available at \ntime of completion, so clone \norientation is unknown" CHROMOSOME_IV assembly_tag Finished 12572583 12572583 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12572583 12572586 . + . Note "left end: K08E7" CHROMOSOME_IV assembly_tag Clone 12572583 12572586 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 12572683 12572683 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12583552 12583552 . + . Note "long gel seems to have strange spacing\nthere calling 2 g's." CHROMOSOME_IV assembly_tag annotation 12583572 12583572 . + . Note "long gel has strange spacing there\ncalling 2 g's." CHROMOSOME_IV assembly_tag Finished 12610947 12610950 . + . Note "Left: Y55D9A" CHROMOSOME_IV assembly_tag Clone 12611043 12611046 . + . Note "right end: K08E7" CHROMOSOME_IV assembly_tag Clone 12611043 12611046 . + . Note "right end: K08E7" CHROMOSOME_IV assembly_tag Finished 12611046 12611046 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12620085 12620198 . + . Note "[ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other CommentRegion in loop of inverted repeat consisting of single clone found by screening pUC library of Y55D9. Theassembly has been confirmed by restrictiondigest (PSTI, XHOI)." CHROMOSOME_IV assembly_tag Clone 12627813 12627816 . + . Note "left end: C01C7" CHROMOSOME_IV assembly_tag Clone 12627813 12627816 . + . Note "left end: C01C7" CHROMOSOME_IV assembly_tag Finished 12627813 12627816 . - . Note "Left: C01C7" CHROMOSOME_IV assembly_tag Finished 12627909 12627912 . + . Note "Right: Y55D9A" CHROMOSOME_IV assembly_tag annotation 12633282 12633318 . + . Note "This is part of the loop of an inverted repeat and therefore have only managed to get one clone across." CHROMOSOME_IV assembly_tag Clone 12647940 12647943 . + . Note "right end: C26H9" CHROMOSOME_IV assembly_tag Finished 12648036 12648039 . - . Note "Right: C01C7" CHROMOSOME_IV assembly_tag Finished 12674259 12674262 . + . Note "Left: VT23B5" CHROMOSOME_IV assembly_tag Clone 12674359 12674362 . + . Note "right end: C26H9" CHROMOSOME_IV assembly_tag Finished 12682979 12682979 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12682979 12682982 . + . Note "left end: T23B5" CHROMOSOME_IV assembly_tag Clone 12682979 12682982 . + . Note "left end: T23B5" CHROMOSOME_IV assembly_tag annotation 12683019 12683019 . + . Note "single read shows G > C transition\nbut this is probably a gel artifact" CHROMOSOME_IV assembly_tag Finished 12683069 12683072 . + . Note "Right: VT23B5" CHROMOSOME_IV assembly_tag annotation 12709647 12709719 . + . Note "region covered by single double-\nstranded phagemid clone only. Area\ncomprises loop and part of both\narms of repeat, and has been edited\nto "best guess" in many places.\nSequence over these bases is uncertain" CHROMOSOME_IV assembly_tag Finished 12711891 12711891 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12711891 12711894 . + . Note "left end: C27D8" CHROMOSOME_IV assembly_tag Clone 12711891 12711894 . + . Note "left end: C27D8" CHROMOSOME_IV assembly_tag Finished 12711994 12711994 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12717819 12717819 . + . Note "th13h6 could have possible point mutation of c to g" CHROMOSOME_IV assembly_tag Clone 12718559 12718562 . + . Note "right end: T23B5" CHROMOSOME_IV assembly_tag Finished 12730733 12730736 . + . Note "Left: T23F6" CHROMOSOME_IV assembly_tag Clone 12730733 12730736 . + . Note "left end: T23F6" CHROMOSOME_IV assembly_tag Clone 12730733 12730736 . - . Note "left end: T23F6." CHROMOSOME_IV assembly_tag Finished 12730836 12730836 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12742068 12744275 . + . Note "[x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other CommentRegion of 26 base pair tandem repeat.Some base pair differences have been edited. The size of the repeat region in this assembly has been confirmed by restriction digest (SACI). " CHROMOSOME_IV assembly_tag Clone 12751404 12751407 . - . Note "right end: C27D8" CHROMOSOME_IV assembly_tag Finished 12752146 12752146 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12752146 12752149 . + . Note "left end: C36H8." CHROMOSOME_IV assembly_tag Clone 12752146 12752149 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 12752242 12752245 . + . Note "Right: T23F6" CHROMOSOME_IV assembly_tag Clone 12761342 12761345 . + . Note "right end: T23F6" CHROMOSOME_IV assembly_tag Finished 12771078 12771078 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12771078 12771081 . + . Note "left end: ZK897" CHROMOSOME_IV assembly_tag Clone 12771078 12771081 . + . Note "left end: ZK897" CHROMOSOME_IV assembly_tag Finished 12771181 12771181 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12791006 12791009 . + . Note "right end: C36H8" CHROMOSOME_IV assembly_tag Finished 12800489 12800489 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12800489 12800492 . + . Note "left end: F07C6" CHROMOSOME_IV assembly_tag Clone 12800489 12800492 . + . Note "left end: F07C6" CHROMOSOME_IV assembly_tag Finished 12800594 12800594 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12809671 12809674 . + . Note "right end: ZK897" CHROMOSOME_IV assembly_tag Finished 12835181 12835181 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12835181 12835184 . + . Note "left end: M02B1" CHROMOSOME_IV assembly_tag Clone 12835181 12835184 . + . Note "left end: M02B1" CHROMOSOME_IV assembly_tag Finished 12835285 12835285 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 12863444 12863444 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12863444 12863447 . + . Note "left end: ZK896" CHROMOSOME_IV assembly_tag Clone 12863444 12863447 . + . Note "left end: ZK896 clone left end" CHROMOSOME_IV assembly_tag Finished 12863544 12863544 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12873823 12873826 . - . Note "right end: M02B1 clone right end" CHROMOSOME_IV assembly_tag annotation 12875465 12875466 . - . Note "this clone shows a point mutation ac\nand has been edited to the consensus of the other reads aa" CHROMOSOME_IV assembly_tag annotation 12875466 12875466 . + . Note "this clone shows a point mutation ac and has been edited to the consensus of the other reads aa" CHROMOSOME_IV assembly_tag annotation 12898106 12898134 . + . Note "this region is single stranded only\nbut is covered walks on a cosmid pcr" CHROMOSOME_IV assembly_tag Finished 12901051 12901054 . + . Note "Left: VK08D8" CHROMOSOME_IV assembly_tag Clone 12901151 12901154 . + . Note "right end: Zk896 clone right end" CHROMOSOME_IV assembly_tag Clone 12901151 12901154 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 12901151 12901154 . + . Note "right end: ZK896" CHROMOSOME_IV assembly_tag Finished 12901154 12901154 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 12901508 12901508 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12901508 12901511 . + . Note "left end: K08D8" CHROMOSOME_IV assembly_tag Clone 12901508 12901511 . + . Note "left end: K08D8" CHROMOSOME_IV assembly_tag Finished 12901608 12901611 . + . Note "Right: VK08D8" CHROMOSOME_IV assembly_tag annotation 12902937 12902940 . + . Note "Tandem repeat assembled according to restriction digest. PCR product from cosmid is deleting across this region" CHROMOSOME_IV assembly_tag annotation 12903191 12903220 . + . Note "single template across tandem repeat cosmid PCR deletes this region." CHROMOSOME_IV assembly_tag annotation 12903378 12903431 . + . Note "only cosmid pcr product for this region which is unique after tandem repeat" CHROMOSOME_IV assembly_tag annotation 12918309 12918309 . + . Note "point mutation in templates ys68c4 and ys67c2" CHROMOSOME_IV assembly_tag Finished 12925671 12925674 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12925671 12925674 . + . Note "left end: C32H11" CHROMOSOME_IV assembly_tag Clone 12925671 12925674 . - . Note "left end: C32H11" CHROMOSOME_IV assembly_tag Finished 12925774 12925774 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12932686 12932689 . + . Note "right end: K08D8" CHROMOSOME_IV assembly_tag annotation 12943743 12944384 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a 168bp tandem repeat element. The digest with BanII suggests that there is approximately 1.5kb missing from this assembly in this region." CHROMOSOME_IV assembly_tag Finished 12957221 12957221 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12957221 12957224 . + . Note "left end: F55G11" CHROMOSOME_IV assembly_tag Clone 12957221 12957224 . + . Note "left end: F55G11" CHROMOSOME_IV assembly_tag Finished 12957321 12957324 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 12966708 12966710 . - . Note "right end: " CHROMOSOME_IV assembly_tag Finished 12986043 12986043 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 12986043 12986046 . + . Note "left end: K10D11" CHROMOSOME_IV assembly_tag Clone 12986043 12986046 . + . Note "left end: K10D11" CHROMOSOME_IV assembly_tag Finished 12986143 12986143 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 12993026 12993026 . + . Note "clone tg95d7 has point mutation og G\nto a C" CHROMOSOME_IV assembly_tag Clone 12995499 12995502 . + . Note "right end: F55G11" CHROMOSOME_IV assembly_tag annotation 13016853 13016859 . + . Note "deletion of 7 bases in this clone" CHROMOSOME_IV assembly_tag Clone 13019895 13019898 . + . Note "left end: T13E8" CHROMOSOME_IV assembly_tag Finished 13023262 13023262 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13023361 13023364 . + . Note "right end: K10D11" CHROMOSOME_IV assembly_tag Clone 13023361 13023364 . + . Note "right end: K10D11" CHROMOSOME_IV assembly_tag Finished 13023364 13023364 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 13039617 13039617 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13039617 13039620 . + . Note "left end: left end of F49E11" CHROMOSOME_IV assembly_tag Clone 13039617 13039620 . + . Note "left end: F49E11" CHROMOSOME_IV assembly_tag Finished 13039721 13039721 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 13071973 13071973 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13071973 13071976 . + . Note "left end: left end of C39E9" CHROMOSOME_IV assembly_tag Clone 13071973 13071976 . + . Note "left end: Left hand end of C39E9." CHROMOSOME_IV assembly_tag Finished 13072074 13072074 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13076054 13076057 . + . Note "right end: Right hand end of F49E11." CHROMOSOME_IV assembly_tag Finished 13109753 13109753 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13109753 13109756 . + . Note "left end: B0564" CHROMOSOME_IV assembly_tag Clone 13109753 13109756 . + . Note "left end: Left hand end of B0564." CHROMOSOME_IV assembly_tag Finished 13109856 13109856 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13113810 13113813 . + . Note "right end: C39E9" CHROMOSOME_IV assembly_tag annotation 13124365 13124366 . + . Note "single read missing AC" CHROMOSOME_IV assembly_tag annotation 13124648 13124648 . + . Note "single read (same as previous tag) has mutation T > C" CHROMOSOME_IV assembly_tag annotation 13133276 13133276 . + . Note "single read lacks this G" CHROMOSOME_IV assembly_tag annotation 13137665 13137665 . + . Note "missing C on single read" CHROMOSOME_IV assembly_tag Finished 13148985 13148985 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13148985 13148988 . + . Note "left end: F09E8" CHROMOSOME_IV assembly_tag Clone 13148985 13148988 . + . Note "left end: F09E8" CHROMOSOME_IV assembly_tag Finished 13149085 13149085 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 13177091 13177097 . + . Note "6 base pairs single clone but terminated" CHROMOSOME_IV assembly_tag Clone 13185344 13185347 . + . Note "left end: F58D2" CHROMOSOME_IV assembly_tag Finished 13185344 13185347 . + . Note "Left: F58D2" CHROMOSOME_IV assembly_tag Clone 13189105 13189108 . + . Note "right end: F09E8" CHROMOSOME_IV assembly_tag Clone 13189105 13189108 . - . Note "right end: F09E8" CHROMOSOME_IV assembly_tag Finished 13189108 13189108 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 13204514 13204514 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13204514 13204517 . + . Note "left end: C48D1" CHROMOSOME_IV assembly_tag Clone 13204514 13204517 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 13204610 13204613 . + . Note "Right: F58D2" CHROMOSOME_IV assembly_tag annotation 13214180 13214215 . + . Note "region covered by single read.\nCorresponds to loop and part of \narm of inverted repeat (see analysis\ndata)\n" CHROMOSOME_IV assembly_tag Clone 13223020 13223023 . - . Note "right end: Right hand end of F58D2." CHROMOSOME_IV assembly_tag Finished 13237533 13237536 . + . Note "Left: JC8" CHROMOSOME_IV assembly_tag Clone 13237533 13237536 . + . Note "left end: JC8" CHROMOSOME_IV assembly_tag Clone 13244418 13244421 . + . Note "right end: C48D1" CHROMOSOME_IV assembly_tag Clone 13244418 13244421 . - . Note "right end: C48D1" CHROMOSOME_IV assembly_tag Finished 13244421 13244421 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 13256368 13256370 . + . Note "3 bp covered by one clone only." CHROMOSOME_IV assembly_tag Finished 13276982 13276985 . + . Note "Left: Y67H2A" CHROMOSOME_IV assembly_tag Finished 13277082 13277085 . + . Note "Right: JC8" CHROMOSOME_IV assembly_tag Clone 13277082 13277085 . + . Note "right end: JC8" CHROMOSOME_IV assembly_tag Finished 13292861 13292864 . - . Note "Right: Y67H2A" CHROMOSOME_IV assembly_tag Finished 13292965 13292968 . + . Note "Left: Y67H2B" CHROMOSOME_IV assembly_tag Finished 13300886 13300891 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 13300886 13300891 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 13300884 13300890 . - . Note "left end: W02A2" CHROMOSOME_IV assembly_tag Finished 13300988 13300991 . + . Note "Right: Y67H2B" CHROMOSOME_IV assembly_tag annotation 13326595 13326599 . - . Note "probably 5 Gs" CHROMOSOME_IV assembly_tag Clone 13336761 13336764 . + . Note "right end: no orientation of clone at present." CHROMOSOME_IV assembly_tag Finished 13336761 13336764 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 13393802 13393805 . - . Note "Left: K09B11" CHROMOSOME_IV assembly_tag Clone 13393802 13393805 . - . Note "left end: K09B11" CHROMOSOME_IV assembly_tag annotation 13418488 13418602 . - . Note "bases 14001 - 14115 are covered by\nreads from a single sonicated clone, in\nthe inverted repeat region (bases 13750\n- 14230)." CHROMOSOME_IV assembly_tag annotation 13427706 13427738 . - . Note "bases 4865 - 4897 are covered by a \nsingle pUC clone. Size confirmed by\nrestriction digest." CHROMOSOME_IV assembly_tag annotation 13427862 13427940 . - . Note "bases 4148 - 4742 covered by clones\nfrom a sonicated pcr product. Region\nis confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 13427941 13428211 . - . Note "bases 4148 - 4742 covered by clones\nfrom a sonicated pcr product. Region\nis confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 13428212 13428455 . - . CHROMOSOME_IV assembly_tag annotation 13429764 13429902 . - . CHROMOSOME_IV assembly_tag Finished 13432499 13432502 . + . Note "Left: Y38H8A" CHROMOSOME_IV assembly_tag Clone 13432599 13432602 . + . Note "left end: K09B11" CHROMOSOME_IV assembly_tag Finished 13432599 13432602 . - . Note "Right: K09B11" CHROMOSOME_IV assembly_tag Clone 13432599 13432602 . - . Note "right end: K09B11" CHROMOSOME_IV assembly_tag annotation 13457688 13457752 . + . CHROMOSOME_IV assembly_tag annotation 13457907 13457916 . + . Note "inverted repeat region - base count is correct although individual base calls\nmay possibly be incorrect" CHROMOSOME_IV assembly_tag annotation 13462619 13462920 . + . Note "single clone over bases 68877- 69179 in the inverted repeat region\n" CHROMOSOME_IV assembly_tag annotation 13465324 13465337 . + . Note "single clone over bases 71581 - 71595\nin inverted repeat region" CHROMOSOME_IV assembly_tag Clone 13467470 13467475 . + . Note "left end: Y45F10" CHROMOSOME_IV assembly_tag Clone 13467470 13467475 . + . Note "left end: Y45F10A" CHROMOSOME_IV assembly_tag Finished 13467470 13467475 . + . Note "Left: Y45F10A" CHROMOSOME_IV assembly_tag Finished 13467572 13467575 . + . Note "Right: Y38H8A" CHROMOSOME_IV assembly_tag annotation 13473938 13473995 . + . Note "single clone across bases 6469 - 6526.\nSize confirmed by restriction digest\nof pUC clone." CHROMOSOME_IV assembly_tag annotation 13481855 13481965 . + . Note "single clone across bases 14386 -14496 " CHROMOSOME_IV assembly_tag annotation 13484269 13484299 . + . Note "single sonicated pUC subclone across\nbases 16800 - 16829, in the inverted \nrepeat region ( bases 16780 - 16945)." CHROMOSOME_IV assembly_tag Clone 13493709 13493712 . + . Note "left end: F52G2" CHROMOSOME_IV assembly_tag Finished 13493709 13493712 . + . Note "Left: F52G2" CHROMOSOME_IV assembly_tag Clone 13493709 13493712 . + . Note "left end: F52G2" CHROMOSOME_IV assembly_tag Finished 13493809 13493812 . + . Note "Right: Y45F10A" CHROMOSOME_IV assembly_tag annotation 13510963 13511046 . + . Note "Region covered by single sonicated clone in the inverted repeat covering bases 22246 to 23146." CHROMOSOME_IV assembly_tag annotation 13521904 13522422 . + . Note "Bases 28196 - 28714 deleted from F52G2.Sequence is present in yac Y45F10 and has been stolen from there." CHROMOSOME_IV assembly_tag Finished 13532876 13532879 . + . Note "Left: Y45F10B" CHROMOSOME_IV assembly_tag Finished 13532976 13532979 . + . Note "Right: F52G2" CHROMOSOME_IV assembly_tag Clone 13532976 13532979 . - . Note "right end: F52G2" CHROMOSOME_IV assembly_tag Clone 13532976 13532979 . - . Note "left end: F52G2" CHROMOSOME_IV assembly_tag oligo 13534191 13534207 . + . Note "serial#=Y45F10-1\ntemplate=vo29e6.r1t \nsequence=AAGTTAGTCTCAGGCTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13534273 13534290 . + . Note "serial#=Y45F10-48\ntemplate=vo29e6.r1t \nsequence=TCAGTCAAGTGAATTTCC\nflags=\n" CHROMOSOME_IV assembly_tag cosmid 13536012 13536068 . - . Note "vector: " CHROMOSOME_IV assembly_tag oligo 13537689 13537706 . + . Note "serial#=Y45F10-18\ntemplate=vo19a5.f1tl \nsequence=AAAAACAAAACTCCGCAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13540753 13540770 . + . Note "serial#=Y45F10-49\ntemplate=vo22b3.f1 \nsequence=TTTTTTGACATTACCGCC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13540753 13540770 . + . Note "serial#=\ntemplate=vo22b3.f1 \nsequence=TTTTTTGACATTACCGCC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13544179 13544197 . - . Note "serial#=Y45F10-25\ntemplate=vo22b3.r1t \nsequence=CGGTCATTCATTTTTAGAG\nflags=\n" CHROMOSOME_IV assembly_tag Clone 13548379 13548382 . + . Note "left end: H06C16" CHROMOSOME_IV assembly_tag cosmid 13548379 13548383 . - . Note "vector: " CHROMOSOME_IV assembly_tag repeat 13549909 13550157 . - . Note "Repeats with contig Y45F10-J3.18, offset 1\n" CHROMOSOME_IV assembly_tag oligo 13554033 13554049 . + . Note "serial#=Y45F10-24\ntemplate=vo11f12.f1 \nsequence=CGGTGTTGCCGATATTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13556826 13556843 . - . Note "serial#=Y45F10-27\ntemplate=vn98b10.f1 \nsequence=GCACTTATGAACTCAAAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13561403 13561420 . + . Note "serial#=Y45F10-26\ntemplate=vn35h2.r1t \nsequence=GGGACTAAAAAACTCTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13562057 13562074 . + . Note "serial#=Y45F10-50\nsequence=TGTCATTTGTTACAACCC\nflags=\n" CHROMOSOME_IV assembly_tag comment 13563587 13563593 . - . Note "?chimaeric clone" CHROMOSOME_IV assembly_tag cosmid 13563871 13563922 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13564019 13564034 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13564008 13564060 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13564009 13564064 . - . Note "vector: " CHROMOSOME_IV assembly_tag annotation 13564089 13564279 . + . Note "single sonicated clone across bases\n82650 - 82935 in the inverted repeat\nregion (bases 82520 - 83165)." CHROMOSOME_IV assembly_tag comment 13564143 13564149 . + . Note "chimaeric clone" CHROMOSOME_IV assembly_tag Inverted 13563962 13564225 . - . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13564226 13564241 . - . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13564242 13564263 . - . Note "Repeat: " CHROMOSOME_IV assembly_tag annotation 13564280 13564361 . + . Note "single sonicated clone across bases\n82650 - 82935 in the inverted repeat\nregion (bases 82520 - 83165)." CHROMOSOME_IV assembly_tag Inverted 13564300 13564322 . + . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13564323 13564332 . + . Note "Repeat: " CHROMOSOME_IV assembly_tag Inverted 13564333 13564602 . + . Note "Repeat: " CHROMOSOME_IV assembly_tag annotation 13564362 13564374 . + . Note "single sonicated clone across bases\n82650 - 82935 in the inverted repeat\nregion (bases 82520 - 83165)." CHROMOSOME_IV assembly_tag oligo 13564442 13564458 . - . Note "serial#=Y45F10-40\ntemplate=vo01c3.f1 \nsequence=GCAAGTAGCAGTGAAAG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13564840 13564861 . + . Note "serial#=Y45F10-41\ntemplate=vo37h10.f1 \nsequence=CCGTGACTCGTAAATTAAAAAA\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13565662 13565679 . - . Note "serial#=Y45F10-12\ntemplate=vn99a1.f1tl \nsequence=ATGAACGGAAATGAGTTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13570312 13570334 . + . Note "serial#=Y45F10-13\nsequence=GACATTTTTCTCTAACATCTAAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13570924 13570944 . - . Note "serial#=Y45F10-11\nsequence=TTAACAAAGCCTATACATTAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13577877 13577898 . + . Note "serial#=Y45F10-10\nsequence=CAGTGAGGTATTTCTAAAAAAG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13578757 13578775 . - . Note "serial#=Y45F10-22\ntemplate=vn34c11.f1 \nsequence=GTTGACAAGAATTTTCACC\nflags=\n" CHROMOSOME_IV assembly_tag compression 13578949 13578955 . + . CHROMOSOME_IV assembly_tag Clone 13585365 13585368 . + . Note "right end: C08F11" CHROMOSOME_IV assembly_tag Finished 13585365 13585368 . - . Note "Left: C08F11" CHROMOSOME_IV assembly_tag Clone 13585365 13585368 . - . Note "left end: C08F11\n" CHROMOSOME_IV assembly_tag Finished 13585465 13585468 . + . Note "Right: Y45F10B" CHROMOSOME_IV assembly_tag Finished 13630940 13630943 . + . Note "Left: Y45F10C" CHROMOSOME_IV assembly_tag Clone 13631040 13631043 . + . Note "left end: " CHROMOSOME_IV assembly_tag Finished 13631040 13631043 . - . Note "Right: C08F11" CHROMOSOME_IV assembly_tag Clone 13631040 13631043 . - . Note "right end: C08F11" CHROMOSOME_IV assembly_tag annotation 13635946 13636082 . + . Note "single sonicated clone across this \nregion" CHROMOSOME_IV assembly_tag annotation 13636752 13637132 . + . Note "single sonicated clone across this \nregion" CHROMOSOME_IV assembly_tag annotation 13637219 13637473 . + . Note "single clone across this region, base\ncount confirmed by poor quality read\n6774" CHROMOSOME_IV assembly_tag annotation 13640880 13640882 . + . Note "GTT missing from some reads - edited\nto include these missing bases" CHROMOSOME_IV assembly_tag cosmid 13649642 13649642 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13649642 13649645 . - . Note "Left: T23G4" CHROMOSOME_IV assembly_tag Clone 13649642 13649645 . - . Note "right end: T23G4" CHROMOSOME_IV assembly_tag Clone 13649642 13649645 . - . Note "left end: T23G4" CHROMOSOME_IV assembly_tag Finished 13649742 13649745 . + . Note "Right: Y45F10C" CHROMOSOME_IV assembly_tag cosmid 13653247 13653257 . + . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13653575 13653585 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13654074 13654079 . + . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13654074 13654077 . - . Note "vector: " CHROMOSOME_IV assembly_tag Clone 13654074 13654077 . - . Note "left end: F52D4" CHROMOSOME_IV assembly_tag cosmid 13654074 13654078 . - . Note "vector: " CHROMOSOME_IV assembly_tag annotation 13661148 13661157 . - . Note "Some reads are 9 A's some reads are 10 A's\nEdited to 10" CHROMOSOME_IV assembly_tag cosmid 13662005 13662017 . - . Note "vector: " CHROMOSOME_IV assembly_tag oligo 13666737 13666754 . + . Note "serial#=F52D4.5\ntemplate=vc98e7.s1 \nsequence=GTCAATAAGATGTCCTTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13667355 13667372 . + . Note "serial#=T23G4.2\ntemplate=vc08d10.s1 \nsequence=TGAAGAAGAGATCGTTTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13667743 13667761 . + . Note "serial#=T23G4.3\ntemplate=vc08d10.st2 \nsequence=CGGACAAACAGATTTATTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13668362 13668382 . - . Note "serial#=F52D4.2\ntemplate=va94d9.s1t \nsequence=GTTTCACGCTAAACATTTATG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13668581 13668601 . - . Note "serial#=F52D4.1\ntemplate=va94d9.s1t \nsequence=CTTGAGTTTTCAACTAGATTC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13668832 13668849 . - . Note "serial#=T23G4.1\nsequence=GTTTTGCGTGAAACAGTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 13669521 13669543 . - . Note "serial#=F52D4.3\nsequence=CAATATTTTCAGACAAATGAAGC\nflags=\n" CHROMOSOME_IV assembly_tag cosmid 13674395 13674405 . + . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13679305 13679313 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13684030 13684033 . + . Note "Left: " CHROMOSOME_IV assembly_tag cosmid 13684129 13684133 . + . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 13684128 13684133 . - . Note "vector: " CHROMOSOME_IV assembly_tag Clone 13684130 13684133 . - . Note "left end: T23G4" CHROMOSOME_IV assembly_tag Finished 13684130 13684133 . - . Note "Right: T23G4" CHROMOSOME_IV assembly_tag Clone 13684130 13684133 . - . Note "right end: T23G4" CHROMOSOME_IV assembly_tag cosmid 13684133 13684133 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13690251 13690254 . + . Note "Left: C47A4" CHROMOSOME_IV assembly_tag Finished 13690351 13690354 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13690351 13690354 . - . Note "left end: F52D4" CHROMOSOME_IV assembly_tag Clone 13690351 13690354 . - . Note "right end: F52D4" CHROMOSOME_IV assembly_tag Clone 13700066 13700069 . - . Note "right end: F56F12" CHROMOSOME_IV assembly_tag annotation 13712069 13714776 . - . Note "First select a Feature -[ ] Unsure[*] Misc_featureThen select the text for the note(s) -[*] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here - 30 copies of 93 base tandem repeat, typical unit : TAGGCTTGAGTGAATAACAACCTGCTTGGAATAGGATTATAGCCAGCCCAGTTTCCAAGACTATTCGGGCCTGCGGCCCTCAAACTTGGTTGA. Restriction digest indicates that approximately 8 copies are missing from this region." CHROMOSOME_IV assembly_tag Finished 13730814 13730817 . + . Note "Left: F56F12" CHROMOSOME_IV assembly_tag Clone 13730911 13730914 . - . Note "right end: C47A4" CHROMOSOME_IV assembly_tag Finished 13730911 13730914 . - . Note "Right: C47A4" CHROMOSOME_IV assembly_tag Clone 13730911 13730914 . - . Note "right end: C47A4" CHROMOSOME_IV assembly_tag Finished 13737592 13737595 . + . Note "Left: Y45F10D" CHROMOSOME_IV assembly_tag Finished 13737692 13737695 . + . Note "Right: F56F12" CHROMOSOME_IV assembly_tag Clone 13737692 13737695 . + . Note "right end: F56F12" CHROMOSOME_IV assembly_tag Clone 13737692 13737695 . - . Note "left end: " CHROMOSOME_IV assembly_tag annotation 13742409 13742613 . + . Note "single clone across bases 276363 -\n276567. Confirmed by poor quality data\nfrom another clone" CHROMOSOME_IV assembly_tag annotation 13747770 13747792 . + . Note "single clone across bases 281730 -\n281752, assembly confirmed by restriction digest" CHROMOSOME_IV assembly_tag annotation 13780326 13780373 . + . Note "bases 314283 - 314330 are covered by a single clone, sequenced with 2\ndifferent chemistries." CHROMOSOME_IV assembly_tag annotation 13792507 13792578 . + . Note "single clone across bases 326467 -\n326538. Region confirmed by restriction\ndigest." CHROMOSOME_IV assembly_tag Clone 13797061 13797064 . + . Note "left end: H08M01" CHROMOSOME_IV assembly_tag Clone 13797061 13797064 . + . Note "left end: H08M01" CHROMOSOME_IV assembly_tag Finished 13797061 13797064 . - . Note "Left: H08M01" CHROMOSOME_IV assembly_tag Finished 13797161 13797164 . - . Note "Right: Y45F10D" CHROMOSOME_IV assembly_tag Finished 13828225 13828228 . + . Note "Left: B0513" CHROMOSOME_IV assembly_tag Clone 13828225 13828228 . - . Note "left end: B0513\nNo overlaps" CHROMOSOME_IV assembly_tag Clone 13828225 13828228 . - . Note "left end: B0513\n" CHROMOSOME_IV assembly_tag Finished 13828325 13828328 . - . Note "Right: " CHROMOSOME_IV assembly_tag Clone 13836263 13836266 . + . Note "left end: F14E12" CHROMOSOME_IV assembly_tag annotation 13846130 13846159 . - . Note "Single clone region\nAsssembly confirmed by restriction\ndigest" CHROMOSOME_IV assembly_tag annotation 13857966 13857989 . - . Note "Number of Gs may not be accurate" CHROMOSOME_IV assembly_tag Finished 13870735 13870738 . + . Note "Left: F14E12" CHROMOSOME_IV assembly_tag Finished 13870835 13870838 . + . Note "Right: B0513" CHROMOSOME_IV assembly_tag Clone 13870836 13870839 . + . Note "right end: B0513" CHROMOSOME_IV assembly_tag cosmid 13870833 13870838 . - . Note "vector: " CHROMOSOME_IV assembly_tag Clone 13870835 13870838 . - . Note "right end: B0513" CHROMOSOME_IV assembly_tag Clone 13870835 13870838 . - . Note "left end: B0513" CHROMOSOME_IV assembly_tag Finished 13871920 13871923 . + . Note "Left: Y37A1A\n" CHROMOSOME_IV assembly_tag Clone 13871920 13871923 . + . Note "left end: Y37A1A" CHROMOSOME_IV assembly_tag cosmid 13872020 13872024 . + . Note "vector: " CHROMOSOME_IV assembly_tag Clone 13872021 13872024 . + . Note "right end: F14E12" CHROMOSOME_IV assembly_tag cosmid 13872021 13872024 . + . Note "vector: " CHROMOSOME_IV assembly_tag Finished 13872021 13872024 . + . Note "Right: F14E12" CHROMOSOME_IV assembly_tag Clone 13872021 13872024 . - . Note "right end: F14E12" CHROMOSOME_IV assembly_tag cosmid 13872024 13872024 . + . Note "vector: " CHROMOSOME_IV assembly_tag comment 13880676 13880694 . + . Note "Check this edit." CHROMOSOME_IV assembly_tag Clone 13914784 13914787 . + . Note "left end: C27H2" CHROMOSOME_IV assembly_tag Clone 13914784 13914787 . - . Note "left end: C27H2" CHROMOSOME_IV assembly_tag Finished 13914784 13914787 . - . Note "Left: C27H2" CHROMOSOME_IV assembly_tag Finished 13914884 13914887 . + . Note "Right: Y37A1A" CHROMOSOME_IV assembly_tag Finished 13950990 13950993 . + . Note "Left: Y37A1B" CHROMOSOME_IV assembly_tag Clone 13951088 13951091 . + . Note "right end: C27H2" CHROMOSOME_IV assembly_tag Clone 13951088 13951091 . - . Note "right end: C27H2" CHROMOSOME_IV assembly_tag Finished 13951088 13951091 . - . Note "Right: C27H2" CHROMOSOME_IV assembly_tag Clone 14049969 14049972 . + . Note "left end: F52B11" CHROMOSOME_IV assembly_tag Clone 14049969 14049972 . - . Note "left end: F52B11" CHROMOSOME_IV assembly_tag Finished 14049969 14049972 . - . Note "Left: F52B11" CHROMOSOME_IV assembly_tag Finished 14050069 14050072 . + . Note "Right: Y37A1B" CHROMOSOME_IV assembly_tag annotation 14057442 14057470 . - . Note "This region is only covered by a single clone. This clone vo47h8 has been sonicated. The region is consistent with the digest." CHROMOSOME_IV assembly_tag annotation 14057714 14057751 . - . Note "This region is covered only by a single clone vo47h8. The region is consistent with the digest." CHROMOSOME_IV assembly_tag Finished 14092726 14092729 . + . Note "Left: Y37A1C" CHROMOSOME_IV assembly_tag Clone 14092826 14092829 . + . Note "right end: F52B11" CHROMOSOME_IV assembly_tag Finished 14092826 14092829 . - . Note "Right: F52B11" CHROMOSOME_IV assembly_tag Clone 14092826 14092829 . - . Note "right end: F52B11" CHROMOSOME_IV assembly_tag Finished 14095010 14095013 . + . Note "Left: H12I19" CHROMOSOME_IV assembly_tag Clone 14095010 14095013 . + . Note "left end: H12I19" CHROMOSOME_IV assembly_tag Clone 14095010 14095013 . - . Note "left end: H12I19" CHROMOSOME_IV assembly_tag Finished 14095110 14095113 . + . Note "Right: Y37A1C" CHROMOSOME_IV assembly_tag Clone 14108498 14108501 . - . Note "right end: T08E3" CHROMOSOME_IV assembly_tag Clone 14132333 14132338 . + . Note "left end: R05A10" CHROMOSOME_IV assembly_tag Clone 14132333 14132338 . - . Note "left end: R05A10" CHROMOSOME_IV assembly_tag Finished 14132333 14132338 . - . Note "Left: " CHROMOSOME_IV assembly_tag Finished 14132433 14132436 . - . Note "Right: H12I19" CHROMOSOME_IV assembly_tag Clone 14133110 14133115 . + . Note "right end: Y37A1" CHROMOSOME_IV assembly_tag annotation 14136593 14136659 . + . Note "Single clone region. \nRestriction digest confirms assembly." CHROMOSOME_IV assembly_tag annotation 14163041 14163043 . + . Note "Single clone across this region.\nRestriction digest confirms assembly." CHROMOSOME_IV assembly_tag Finished 14164343 14164346 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14164343 14164346 . + . Note "left end: K01G12" CHROMOSOME_IV assembly_tag Clone 14164343 14164346 . - . Note "left end: " CHROMOSOME_IV assembly_tag Finished 14164443 14164446 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14171833 14171838 . - . Note "right end: " CHROMOSOME_IV assembly_tag Clone 14174844 14174847 . + . Note "left end: F02H6" CHROMOSOME_IV assembly_tag Finished 14174844 14174847 . + . Note "Left: F02H6" CHROMOSOME_IV assembly_tag Clone 14174844 14174847 . + . Note "left end: F02H6" CHROMOSOME_IV assembly_tag Finished 14174944 14174947 . + . Note "Right: " CHROMOSOME_IV assembly_tag annotation 14188694 14193222 . + . Note "Tandem repeat \ntypical repeat element TTCCTTTCGTGCAAAGGAATGTCCTCTAGCATTCGAGCATGCACAAAGACACCGACAACTCCACAGTCTCTCCCAC (a 66-mer).\nEstimated size 4.5kb, from restriction\ndigest data.\n" CHROMOSOME_IV assembly_tag annotation 14195784 14196013 . + . Note "[y ] Tandem repeat \n\nComment: Restriction digest confirms \nsize of this repeat to be 2.4kb.\n" CHROMOSOME_IV assembly_tag annotation 14196284 14196462 . + . Note "[ ] Tandem repeat \n\nComment: size confirmed by restriction digest.\n" CHROMOSOME_IV assembly_tag Finished 14208850 14208853 . - . Note "Left: Y64G10A" CHROMOSOME_IV assembly_tag Finished 14208947 14208950 . + . Note "Right: F02H6" CHROMOSOME_IV assembly_tag Clone 14208947 14208950 . + . Note "right end: F02H6" CHROMOSOME_IV assembly_tag Clone 14208947 14208950 . + . Note "right end: F02H6" CHROMOSOME_IV assembly_tag Finished 14296174 14296177 . + . Note "Left: Y67A10A" CHROMOSOME_IV assembly_tag Clone 14296174 14296178 . + . Note "left end: Y67A10" CHROMOSOME_IV assembly_tag Clone 14296174 14296179 . + . Note "left end: Y67A10\n" CHROMOSOME_IV assembly_tag Finished 14296274 14296277 . + . Note "Right: Y64G10A\n" CHROMOSOME_IV assembly_tag annotation 14306105 14306282 . + . Note "First select a Feature -\n[ ] Unsure\n[*] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[*] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSequence obtained from small insert library of single clone vm07d11" CHROMOSOME_IV assembly_tag Clone 14378117 14378120 . + . Note "left end: F55B11" CHROMOSOME_IV assembly_tag Finished 14378117 14378120 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14378117 14378120 . - . Note "left end: " CHROMOSOME_IV assembly_tag Finished 14378217 14378220 . - . Note "Right: Y67A10A" CHROMOSOME_IV assembly_tag annotation 14391644 14391653 . + . Note "run of Ts, some 9 some 10, edited\nto 10" CHROMOSOME_IV assembly_tag annotation 14407636 14407660 . + . Note "edited to 25 Ts" CHROMOSOME_IV assembly_tag Clone 14411372 14411375 . + . Note "left end: LLC1" CHROMOSOME_IV assembly_tag Finished 14411372 14411375 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14411372 14411375 . + . Note "left end: left end LLC1, C24C2 is redundant." CHROMOSOME_IV assembly_tag Finished 14411472 14411475 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14415165 14415168 . + . Note "right end: F55B11" CHROMOSOME_IV assembly_tag Clone 14428580 14428583 . + . Note "right end: C24C2 (redundant)" CHROMOSOME_IV assembly_tag Finished 14447191 14447194 . + . Note "Left: Y67A10B" CHROMOSOME_IV assembly_tag Finished 14447288 14447291 . + . Note "Right: " CHROMOSOME_IV assembly_tag Clone 14447288 14447291 . + . Note "right end: LLC1" CHROMOSOME_IV assembly_tag Clone 14448885 14448888 . + . Note "left end: Y57G11" CHROMOSOME_IV assembly_tag Finished 14448888 14448893 . + . Note "Left: Y57G11A" CHROMOSOME_IV assembly_tag Clone 14448888 14448893 . + . Note "left end: Y57G11" CHROMOSOME_IV assembly_tag Finished 14448985 14448988 . - . Note "Right: Y67A10B" CHROMOSOME_IV assembly_tag Clone 14478319 14478324 . + . Note "right end: Y67A10" CHROMOSOME_IV assembly_tag annotation 14481239 14481248 . + . Note "some clones have 9 T's and others have\n10 T's. Edited to 10 T's." CHROMOSOME_IV assembly_tag annotation 14488383 14488414 . + . CHROMOSOME_IV assembly_tag annotation 14488560 14488681 . + . Note "bases 39496 - 39528 and bases 39673 -\n39794 (in the inverted repeat region across bases 39310 - 39680) are covered by a single pUC18subclone which has been sonicated and re-subcloned into pUC18." CHROMOSOME_IV assembly_tag Finished 14495339 14495342 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14495339 14495342 . + . Note "left end: " CHROMOSOME_IV assembly_tag Clone 14495339 14495342 . + . Note "left end: T27E7" CHROMOSOME_IV assembly_tag Clone 14495339 14495342 . + . Note "left end: T27E7" CHROMOSOME_IV assembly_tag Finished 14495439 14495442 . + . Note "Right: Y57G11A" CHROMOSOME_IV assembly_tag annotation 14503466 14503520 . - . Note "Single clone of vj80c5 sonicated PCR." CHROMOSOME_IV assembly_tag annotation 14503466 14503568 . - . Note "single clone of vj80c5 sonicated PCR." CHROMOSOME_IV assembly_tag Finished 14528195 14528198 . + . Note "Left: Y57G11B" CHROMOSOME_IV assembly_tag Clone 14528295 14528298 . + . Note "right end: " CHROMOSOME_IV assembly_tag Clone 14528295 14528298 . + . Note "right end: T27E7" CHROMOSOME_IV assembly_tag Clone 14528295 14528298 . + . Note "right end: T27E7" CHROMOSOME_IV assembly_tag Finished 14528295 14528298 . + . Note "Right: " CHROMOSOME_IV assembly_tag Finished 14576980 14576983 . + . Note "Left: " CHROMOSOME_IV assembly_tag Clone 14576980 14576983 . - . Note "right end: F13G11" CHROMOSOME_IV assembly_tag Clone 14576980 14576983 . - . Note "left end: F13G11\n" CHROMOSOME_IV assembly_tag Finished 14577080 14577083 . - . Note "Right: Y57G11B" CHROMOSOME_IV assembly_tag Finished 14615101 14615104 . + . Note "Left: Y57G11C" CHROMOSOME_IV assembly_tag Clone 14615201 14615204 . - . Note "left end: F13G11" CHROMOSOME_IV assembly_tag Clone 14615201 14615204 . - . Note "right end: F13G11" CHROMOSOME_IV assembly_tag Finished 14615201 14615204 . - . Note "Right: " CHROMOSOME_IV assembly_tag annotation 14757234 14757463 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 14757464 14757837 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 14757838 14758106 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction digest." CHROMOSOME_IV assembly_tag annotation 14758107 14758295 . + . Note "tandem repeat across bases 308461 -\n309522 with typical repeat element ACCCTTGTGATCCTTTGGAGCTGAAGATTCAGTTCATAAGGGGG (49mer).\nSize confirmed by restriction dig" CHROMOSOME_IV assembly_tag annotation 14758734 14758735 . + . Note "GT missing from one template but \nconfirmed by others" CHROMOSOME_IV assembly_tag annotation 14758755 14758771 . + . Note "bases 309982 - 309998 are covered by\na single clone" CHROMOSOME_IV assembly_tag Clone 14869409 14869414 . + . Note "left end: Y41E3" CHROMOSOME_IV assembly_tag Clone 14901415 14901418 . + . Note "left end: F52D11" CHROMOSOME_IV assembly_tag Finished 14928570 14928573 . + . Note "Left: Y41E3" CHROMOSOME_IV assembly_tag Clone 14928668 14928673 . + . Note "right end: Y57G11" CHROMOSOME_IV assembly_tag Clone 14928668 14928673 . + . Note "right end: Y57G11" CHROMOSOME_IV assembly_tag Finished 14928668 14928673 . + . Note "Right: Y57G11C" CHROMOSOME_IV assembly_tag resolved 14930857 14930864 . - . Note "compression: " CHROMOSOME_IV assembly_tag resolved 14931473 14931478 . + . Note "compression: " CHROMOSOME_IV assembly_tag cosmid 14939949 14939958 . - . Note "vector: " CHROMOSOME_IV assembly_tag cosmid 14942668 14942672 . + . Note "vector: " CHROMOSOME_IV assembly_tag Clone 14942669 14942672 . + . Note "right end: F52D11" CHROMOSOME_IV assembly_tag resolved 14952466 14952473 . + . Note "compression: " CHROMOSOME_IV assembly_tag oligo 14954995 14955017 . + . Note "serial#=Y41E3-1\ntemplate=vo87h6.r1t \nsequence=GAATAATTTTTAGATTTCCCGAC\nflags=\n" CHROMOSOME_IV assembly_tag resolved 14957834 14957840 . - . Note "compression: " CHROMOSOME_IV assembly_tag oligo 14961023 14961040 . + . Note "serial#=Y41E3-2\ntemplate=vo45h4.f1 \nsequence=ATGCCTGAAAAATTGGTG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 14961546 14961563 . - . Note "serial#=Y41E3-3\ntemplate=vo83g3.f1 \nsequence=GCATTTATCGCAAAAAGG\nflags=\n" CHROMOSOME_IV assembly_tag oligo 14987500 14987517 . + . Note "serial#=Y41E3-4\ntemplate=vo45h5.f1 \nsequence=CAAGAAAAATGCGAATAC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 14987666 14987687 . - . Note "serial#=Y41e3-5\ntemplate=vo90c10.f1 \nsequence=GTTTTTGCCTAATTCCTATTTG\nflags=\n" CHROMOSOME_IV assembly_tag comment 14990009 14990014 . + . Note "?read doesn't match --->" CHROMOSOME_IV assembly_tag oligo 14990096 14990115 . + . Note "Y41E3-6" CHROMOSOME_IV assembly_tag comment 14990594 14990600 . - . Note "?misnamed" CHROMOSOME_IV assembly_tag comment 14990608 14990615 . - . Note "?misnamed" CHROMOSOME_IV assembly_tag oligo 14990649 14990665 . - . Note "serial#=Y41E3-7\ntemplate=vp08b10.f1 \nsequence=ATCTTCTCTCGCACACC\nflags=\n" CHROMOSOME_IV assembly_tag oligo 15007980 15007996