##gff-version 2 ##date 2001-04-10 ##sequence-region CHROMOSOME_V 1 20914693 CHROMOSOME_V assembly_tag Finished 1 6 . + . Note "Left: cTel3X" CHROMOSOME_V assembly_tag Clone 1 6 . + . Note "left end: cTel3X" CHROMOSOME_V assembly_tag Clone 4858 4861 . + . Note "left end: B0348" CHROMOSOME_V assembly_tag Finished 4954 4957 . - . Note "Right: cTel3X" CHROMOSOME_V assembly_tag Clone 9458480 9458483 . + . Note "left end: Start of F07D3" CHROMOSOME_V assembly_tag Finished 9458480 9458483 . + . Note "Left: F07D3" CHROMOSOME_V assembly_tag annotation 9465523 9465566 . + . Note "Region (43bp) covered by good data from one clone only. However, poor cut-off data from 2 other clones confirm that this is cosmid sequence." CHROMOSOME_V assembly_tag Clone 9474235 9474238 . + . Note "left end: BEGINNING OF K06A4" CHROMOSOME_V assembly_tag Clone 9474235 9474238 . + . Note "left end: Start of K06A4" CHROMOSOME_V assembly_tag Finished 9474235 9474238 . + . Note "Left: K06A4" CHROMOSOME_V assembly_tag Finished 9474335 9474338 . + . Note "Right: F07D3" CHROMOSOME_V assembly_tag annotation 9484923 9485194 . + . Note "Region of inverted repeat : approx 135 bp in each element with no real unique loop. Several M13 clones seem to delete (or slippage occurs during cycle sequencing) in this region. Final sequence was from cosmid PCR. Size agrees with restriction digest data." CHROMOSOME_V assembly_tag Clone 9495835 9495838 . + . Note "right end: END OF F07D3" CHROMOSOME_V assembly_tag Clone 9508137 9508140 . + . Note "left end: F11A3" CHROMOSOME_V assembly_tag Clone 9508137 9508140 . + . Note "left end: BEGINNING OF F11A3" CHROMOSOME_V assembly_tag Finished 9508137 9508140 . + . Note "Left: F11A3" CHROMOSOME_V assembly_tag Finished 9508237 9508240 . + . Note "Right: K06A4" CHROMOSOME_V assembly_tag Clone 9513325 9513328 . + . Note "right end: K06A4" CHROMOSOME_V assembly_tag Clone 9516395 9516398 . + . Note "left end: C50F4" CHROMOSOME_V assembly_tag Finished 9516395 9516398 . + . Note "Left: C50F4" CHROMOSOME_V assembly_tag Clone 9516395 9516398 . + . Note "left end: C50F4" CHROMOSOME_V assembly_tag Finished 9516495 9516498 . + . Note "Right: F11A3" CHROMOSOME_V assembly_tag annotation 9517349 9517359 . + . Note "The majority of reads over this region showed 11 Ts. A single clone gave 12Ts." CHROMOSOME_V assembly_tag Clone 9547616 9547619 . + . Note "right end: F11A3" CHROMOSOME_V assembly_tag Clone 9552462 9552465 . + . Note "left end: F25B3" CHROMOSOME_V assembly_tag Finished 9552462 9552465 . + . Note "Left: F25B3" CHROMOSOME_V assembly_tag Clone 9552462 9552465 . + . Note "left end: Start of F25B3" CHROMOSOME_V assembly_tag Finished 9552562 9552565 . + . Note "Right: C50F4" CHROMOSOME_V assembly_tag Clone 9557268 9557271 . + . Note "right end: End of C50F4" CHROMOSOME_V assembly_tag Clone 9582540 9582543 . + . Note "left end: BEGINNING OF K09G1" CHROMOSOME_V assembly_tag Clone 9582540 9582543 . + . Note "left end: Beginning of K09G1" CHROMOSOME_V assembly_tag Finished 9582540 9582543 . + . Note "Left: K09G1" CHROMOSOME_V assembly_tag Finished 9582640 9582643 . + . Note "Right: F25B3" CHROMOSOME_V assembly_tag Clone 9593369 9593372 . + . Note "right end: END OF F25B3" CHROMOSOME_V assembly_tag annotation 9602624 9602642 . + . Note "One M13 clone clearly had 19 Cs,\nwhereas 3 other M13 clones had only\n17 Cs.\nSequence edited to 19Cs." CHROMOSOME_V assembly_tag annotation 9603497 9603833 . + . Note "Using evidence from restriction digest\nit is estimated that 200 bp are missing\nfrom this region of repeats of type \nRcD1 and Rc35.\n\n" CHROMOSOME_V assembly_tag annotation 9603497 9605044 . + . Note "Using evidence from restriction digest \nit is estimated that 200 bp are missing\nfrom this region of RcD1 and Rc35 \nrepeats." CHROMOSOME_V assembly_tag annotation 9605078 9605645 . + . CHROMOSOME_V assembly_tag Clone 9617093 9617096 . + . Note "left end: BEGINNING OF T06E4" CHROMOSOME_V assembly_tag Finished 9617093 9617096 . + . Note "Left: T06E4" CHROMOSOME_V assembly_tag Clone 9617093 9617096 . - . Note "left end: BEGINNING OF T06E4" CHROMOSOME_V assembly_tag Finished 9617193 9617196 . + . Note "Right: K09G1" CHROMOSOME_V assembly_tag Clone 9621638 9621641 . + . Note "right end: END OF K09G1" CHROMOSOME_V assembly_tag Finished 9655776 9655779 . + . Note "Left: B0331" CHROMOSOME_V assembly_tag Finished 9655862 9655865 . + . Note "Right: T06E4" CHROMOSOME_V assembly_tag Clone 9655862 9655865 . + . Note "right end: END OF T06E4" CHROMOSOME_V assembly_tag Clone 9655876 9655879 . + . Note "right end: ZK287" CHROMOSOME_V assembly_tag Clone 9664646 9664649 . + . Note "left end: ZK287" CHROMOSOME_V assembly_tag Clone 9664646 9664649 . + . Note "left end: ZK287" CHROMOSOME_V assembly_tag Finished 9664646 9664649 . + . Note "Left: ZK287" CHROMOSOME_V assembly_tag Finished 9664745 9664748 . + . Note "Right: B0331" CHROMOSOME_V assembly_tag Clone 9704416 9704419 . + . Note "left end: F40F9" CHROMOSOME_V assembly_tag Clone 9704416 9704419 . + . Note "left end: Start of F40F9" CHROMOSOME_V assembly_tag Finished 9704416 9704419 . + . Note "Left: F40F9" CHROMOSOME_V assembly_tag Finished 9704516 9704519 . + . Note "Right: ZK287" CHROMOSOME_V assembly_tag Clone 9705581 9705584 . + . Note "right end: End of ZK287" CHROMOSOME_V assembly_tag Finished 9740324 9740327 . + . Note "Left: F58E6" CHROMOSOME_V assembly_tag Clone 9740324 9740327 . + . Note "left end: F58E6" CHROMOSOME_V assembly_tag Clone 9740324 9740327 . + . Note "left end: Start of F58E6" CHROMOSOME_V assembly_tag Finished 9740424 9740427 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 9745492 9745495 . + . Note "right end: F40F9" CHROMOSOME_V assembly_tag Clone 9770543 9770546 . + . Note "left end: F46B6" CHROMOSOME_V assembly_tag Clone 9770543 9770546 . + . Note "left end: F46B6" CHROMOSOME_V assembly_tag Finished 9770543 9770546 . + . Note "Left: F46B6" CHROMOSOME_V assembly_tag Stolen 9770543 9770546 . + . Note "Read: " CHROMOSOME_V assembly_tag Finished 9770643 9770646 . + . Note "Right: F58E6" CHROMOSOME_V assembly_tag Clone 9782885 9782888 . + . Note "right end: F58E6" CHROMOSOME_V assembly_tag Finished 9807055 9807058 . + . Note "Left: C50C10" CHROMOSOME_V assembly_tag comment 9807088 9807092 . + . Note "?this is a cosmid pcr using oligos 2 and 5 and then walking with oligo 2" CHROMOSOME_V assembly_tag Clone 9807155 9807158 . + . Note "right end: F46B6" CHROMOSOME_V assembly_tag Clone 9807155 9807158 . + . Note "right end: F46B6" CHROMOSOME_V assembly_tag Finished 9807155 9807158 . + . Note "Right: F46B6" CHROMOSOME_V assembly_tag oligo 9807313 9807328 . + . Note "serial#=C50C10-6 sequence=GCTGTGAAAATCCGATG flags=" CHROMOSOME_V assembly_tag ignore 9807359 9807363 . + . Note "cutoff (sequencing vector): " CHROMOSOME_V assembly_tag ignore 9807420 9807423 . + . Note "cutoff (sequencing vector): " CHROMOSOME_V assembly_tag oligo 9807669 9807687 . + . Note "serial#=C50C10-5 sequence=CAAATGCTTACCATATCTC flags=" CHROMOSOME_V assembly_tag oligo 9807744 9807762 . + . Note "serial#=C50C10-13 template=xs21g3.s1t sequence=CAATGTTTTCAAACGCTTC flags=" CHROMOSOME_V assembly_tag oligo 9808354 9808370 . + . Note "serial#=C50C10-14 template=xs25e12.s1 sequence=AAAACGGTGAGTTCTGG flags=" CHROMOSOME_V assembly_tag oligo 9808845 9808867 . + . Note "serial#=C50C10-3 sequence=GGGTTTTTTTTTTCACTAACATC flags=" CHROMOSOME_V assembly_tag oligo 9809048 9809067 . + . Note "serial#=C50C10-4 sequence=CAATTTATTTCTTCAGACCC flags=" CHROMOSOME_V assembly_tag oligo 9809202 9809218 . + . Note "serial#=C50C10-22 template=C50C10.4.10.10t sequence=CGATTCGCTCATTATCC flags=" CHROMOSOME_V assembly_tag ignore 9809360 9809363 . + . Note "cutoff (sequencing vector): " CHROMOSOME_V assembly_tag ignore 9809477 9809480 . + . Note "cutoff (sequencing vector): " CHROMOSOME_V assembly_tag oligo 9809876 9809893 . + . Note "serial#=C50C10-10 sequence=AATTAGCCTCTCTACTAC flags=" CHROMOSOME_V assembly_tag ambiguous 9810596 9810596 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag oligo 9810844 9810860 . + . Note "serial#=C50C10-15 template=xs27h7.s1 sequence=ATTTCACAATTCTCCGTC flags=" CHROMOSOME_V assembly_tag Conflict 9810947 9810947 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9811065 9811085 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag Conflict 9811068 9811068 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811069 9811069 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811070 9811070 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811072 9811072 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811076 9811076 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811078 9811078 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811081 9811081 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811083 9811083 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811086 9811086 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811088 9811088 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811090 9811090 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811091 9811091 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9811094 9811094 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag oligo 9811784 9811803 . + . Note "serial#=C50C10-19 template=xs21b2.s16t xs21e12.s1 sequence=GCAAGTATAACATTCAATGG flags=" CHROMOSOME_V assembly_tag oligo 9812307 9812324 . + . Note "serial#=C50C10-16 template=xs21b2.s1t sequence=TACAAAATTAGCCTCTCC flags=" CHROMOSOME_V assembly_tag ambiguous 9814435 9814439 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag oligo 9814606 9814626 . + . Note "serial#=C50C10-9 sequence=CCGAAAATATCTACTATATCC flags=" CHROMOSOME_V assembly_tag oligo 9814885 9814902 . + . Note "serial#=C50C10-8 sequence=GGACAGAATAACCTTTAC flags=" CHROMOSOME_V assembly_tag ambiguous 9816205 9816215 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag oligo 9816502 9816519 . + . Note "serial#=C50C10-17 template=xs27c8.s1t sequence=AGAATGAACACGAATCAG flags=" CHROMOSOME_V assembly_tag ambiguous 9816570 9816570 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ignore 9816648 9816651 . + . Note "cutoff (sequencing vector): " CHROMOSOME_V assembly_tag ambiguous 9817167 9817170 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag Conflict 9818186 9818186 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9818188 9818188 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9820144 9820148 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 9820777 9820793 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 9822216 9822216 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag oligo 9823596 9823613 . + . Note "serial#=C50C10-21 Template: xs23d9.s1t template=xs24e9.s1t sequence=GGATGTGATTACTGTCTG flags=" CHROMOSOME_V assembly_tag oligo 9825097 9825118 . + . Note "serial#=C50C10-7 template=xs25f3.s1 sequence=GCACATTCTTCAATTTTCAATC flags=" CHROMOSOME_V assembly_tag ambiguous 9826081 9826100 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag oligo 9826138 9826159 . + . Note "serial#=C50C10-11 template=xs23h12.s1t sequence=GTCTTTCTTCAATAGTCAAATC flags=" CHROMOSOME_V assembly_tag Conflict 9826663 9826663 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag oligo 9827198 9827219 . + . Note "serial#=C50C10-12 template=xs25f4.s1 sequence=CGAAATAGAAATGGAATTTGAG flags=" CHROMOSOME_V assembly_tag ambiguous 9827251 9827261 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag oligo 9828147 9828163 . + . Note "serial#=C50C10-1 template=xs24d4.s1t sequence=CTTCTGAACGGTCTGTG flags=" CHROMOSOME_V assembly_tag oligo 9829159 9829176 . + . Note "serial#=C50C10-18 template=xs24e4.s1t sequence=TTCTACTTGTCACTGTTC flags=" CHROMOSOME_V assembly_tag Clone 9829465 9829470 . + . Note "left end: Start of R07B5" CHROMOSOME_V assembly_tag Clone 9829465 9829470 . + . Note "left end: R07B5" CHROMOSOME_V assembly_tag Finished 9829465 9829470 . + . Note "Left: R07B5" CHROMOSOME_V assembly_tag Finished 9829567 9829570 . + . Note "Right: C50C10" CHROMOSOME_V assembly_tag Conflict 9829840 9829840 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9830638 9830638 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9831890 9831890 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9832907 9832907 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9833059 9833059 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9834825 9834825 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9834826 9834826 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9834827 9834827 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9834829 9834829 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9834831 9834831 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9834832 9834832 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9835126 9835146 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag Conflict 9835132 9835132 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835133 9835133 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835134 9835134 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835137 9835137 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835138 9835138 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835139 9835139 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835140 9835140 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835143 9835143 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835144 9835144 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835146 9835146 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835147 9835147 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835149 9835149 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9835151 9835151 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9836329 9836329 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9837605 9837605 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9837764 9837764 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9837765 9837765 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9838578 9838578 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9838579 9838579 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Clone 9838592 9838595 . + . Note "right end: End of C50C10" CHROMOSOME_V assembly_tag ambiguous 9838689 9838692 . + . CHROMOSOME_V assembly_tag oligo 9838775 9838794 . + . Note "serial#= R07.4 template=xv67b11.s1t sequence=AGAGGAAAAATGTATATCAC flags=20.0 35.0 51.7" CHROMOSOME_V assembly_tag oligo 9839181 9839200 . + . Note "serial#= R07.3 template=xv68b12.s1t sequence=CATTACAAATGCCATTAACC flags= 18.0 35.0 51.7 " CHROMOSOME_V assembly_tag ambiguous 9839300 9839308 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 9840534 9840534 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9840599 9840599 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9841874 9841874 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9841877 9841877 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9842377 9842377 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9842378 9842378 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9842379 9842379 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9842553 9842553 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9842946 9842946 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9842947 9842947 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9842949 9842949 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9843407 9843407 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9843414 9843414 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9843488 9843506 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag Conflict 9843495 9843495 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9843497 9843497 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9843498 9843498 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9843499 9843499 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9843500 9843500 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9843506 9843506 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9846246 9846246 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9846256 9846256 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9846257 9846257 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9846960 9846960 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9847381 9847381 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9847394 9847394 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9847395 9847395 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9847817 9847817 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag Conflict 9848660 9848660 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9848661 9848661 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9848733 9848739 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 9849044 9849044 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9849109 9849109 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9849121 9849121 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9849122 9849122 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9849185 9849185 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9849187 9849191 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 9849225 9849225 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9850463 9850463 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9850808 9850808 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9851734 9851734 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 9852729 9852729 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9853216 9853216 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9853222 9853222 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9853229 9853229 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9853237 9853237 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9853276 9853276 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9853850 9853850 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9854668 9854668 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9854673 9854673 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag ambiguous 9854675 9854675 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Conflict 9855025 9855025 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9855028 9855028 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag Conflict 9855039 9855039 . + . Note "(Autoedit): AUTOEDIT: possible compression" CHROMOSOME_V assembly_tag oligo 9855347 9855364 . + . Note "serial#= R07.2 template=xv69a3.s1a sequence=ACTTGTTATTGCGGAATG flags=16.0 38.9 50.5" CHROMOSOME_V assembly_tag oligo 9855657 9855674 . + . Note "serial#= R07.1 template=xv68b12.s1 sequence=GCTTCGTGGTCATAAAAC flags=20.0 44.4 52.7" CHROMOSOME_V assembly_tag Finished 9856615 9856618 . + . Note "Left: T11A5" CHROMOSOME_V assembly_tag Clone 9856615 9856618 . + . Note "left end: Start of T11A5" CHROMOSOME_V assembly_tag Clone 9856615 9856618 . + . Note "left end: T11A5" CHROMOSOME_V assembly_tag Finished 9856715 9856718 . + . Note "Right: R07B5" CHROMOSOME_V assembly_tag annotation 9856809 9856809 . + . Note "A single clone had a T in this position All other reads clearly showed an A" CHROMOSOME_V assembly_tag resolved 9864711 9864717 . + . Note "compression: " CHROMOSOME_V assembly_tag Sequence 9868165 9868168 . + . Note "Feature: terminator showed 3 A's" CHROMOSOME_V assembly_tag comment 9868580 9868585 . + . CHROMOSOME_V assembly_tag comment 9873657 9873661 . + . Note "?this is really xv85h10.s1tc" CHROMOSOME_V assembly_tag comment 9878322 9878327 . + . Note "?this is really xv90g9.s1tc" CHROMOSOME_V assembly_tag Finished 9887145 9887148 . + . Note "Left: C50H2" CHROMOSOME_V assembly_tag Clone 9887145 9887148 . + . Note "left end: C50H2" CHROMOSOME_V assembly_tag Clone 9887145 9887148 . + . Note "left end: C50H2" CHROMOSOME_V assembly_tag Finished 9887245 9887248 . + . Note "Right: T11A5" CHROMOSOME_V assembly_tag Clone 9894007 9894010 . + . Note "right end: T11A5" CHROMOSOME_V assembly_tag Clone 9928403 9928403 . + . Note "right end: C50H2" CHROMOSOME_V assembly_tag Clone 9928438 9928441 . + . Note "left end: C50H2/T07C12 gap" CHROMOSOME_V assembly_tag Finished 9928438 9928441 . + . Note "Left: VC50H2R" CHROMOSOME_V assembly_tag Clone 9928538 9928541 . + . Note "right end: C50H2" CHROMOSOME_V assembly_tag Finished 9928538 9928541 . + . Note "Right: C50H2" CHROMOSOME_V assembly_tag Clone 9928538 9928541 . - . Note "right end: \nThis GATC site is the right hand end of\nC50H2." CHROMOSOME_V assembly_tag Finished 9930532 9930535 . + . Note "Left: T07C12" CHROMOSOME_V assembly_tag Clone 9930532 9930535 . - . Note "left end: T07C12" CHROMOSOME_V assembly_tag Finished 9930578 9930581 . + . Note "Right: VC50H2R" CHROMOSOME_V assembly_tag Finished 9963910 9963913 . + . Note "Left: C27H6" CHROMOSOME_V assembly_tag Finished 9964010 9964013 . + . Note "Right: T07C12" CHROMOSOME_V assembly_tag Clone 9964010 9964013 . - . Note "right end: End of T07C12" CHROMOSOME_V assembly_tag annotation 9982582 9982582 . + . Note "Unclear G\n" CHROMOSOME_V assembly_tag Finished 9988581 9988584 . + . Note "Left: K08H10" CHROMOSOME_V assembly_tag Clone 9988581 9988584 . + . Note "left end: K08H10" CHROMOSOME_V assembly_tag Clone 9988581 9988584 . - . Note "left end: Beginning of K08H10" CHROMOSOME_V assembly_tag Finished 9988681 9988684 . + . Note "Right: C27H6" CHROMOSOME_V assembly_tag Clone 9999367 9999370 . + . Note "right end: C27H6" CHROMOSOME_V assembly_tag Clone 10021570 10021573 . + . Note "left end: T06E8" CHROMOSOME_V assembly_tag Finished 10027813 10027816 . + . Note "Left: T06E8" CHROMOSOME_V assembly_tag Finished 10027916 10027919 . + . Note "Right: K08H10" CHROMOSOME_V assembly_tag Clone 10027916 10027919 . + . Note "right end: END OF K08H10" CHROMOSOME_V assembly_tag Clone 10027916 10027919 . - . Note "right end: K08H10" CHROMOSOME_V assembly_tag Clone 10047187 10047190 . + . Note "left end: START OF F57A8" CHROMOSOME_V assembly_tag Finished 10047187 10047190 . + . Note "Left: F57A8" CHROMOSOME_V assembly_tag Clone 10047187 10047190 . + . Note "left end: F57A8" CHROMOSOME_V assembly_tag Finished 10047287 10047290 . + . Note "Right: T06E8" CHROMOSOME_V assembly_tag Clone 10077975 10077980 . + . Note "left end: START OF R04B5" CHROMOSOME_V assembly_tag Clone 10077975 10077980 . + . Note "left end: R04B5" CHROMOSOME_V assembly_tag Finished 10077975 10077980 . + . Note "Left: R04B5" CHROMOSOME_V assembly_tag Finished 10078077 10078080 . + . Note "Right: F57A8" CHROMOSOME_V assembly_tag Clone 10084975 10084978 . + . Note "right end: END OF F57A8" CHROMOSOME_V assembly_tag Clone 10102896 10102899 . + . Note "left end: START OF C08B6" CHROMOSOME_V assembly_tag Finished 10102896 10102899 . + . Note "Left: C08B6" CHROMOSOME_V assembly_tag Clone 10102896 10102899 . + . Note "left end: Start of C08B6" CHROMOSOME_V assembly_tag Finished 10102996 10102999 . + . Note "Right: R04B5" CHROMOSOME_V assembly_tag annotation 10114815 10114815 . + . CHROMOSOME_V assembly_tag Clone 10115330 10115335 . + . Note "right end: End of R04B5" CHROMOSOME_V assembly_tag Finished 10145882 10145885 . + . Note "Left: C51E3" CHROMOSOME_V assembly_tag Finished 10145982 10145985 . + . Note "Right: C08B6" CHROMOSOME_V assembly_tag Clone 10145982 10145985 . + . Note "right end: End of C08B6" CHROMOSOME_V assembly_tag Clone 10145982 10145985 . + . Note "right end: END OF C08B6" CHROMOSOME_V assembly_tag Finished 10178339 10178342 . + . Note "Left: ZK856" CHROMOSOME_V assembly_tag Clone 10178339 10178342 . + . Note "left end: START OF ZK856" CHROMOSOME_V assembly_tag Finished 10178439 10178442 . + . Note "Right: C51E3" CHROMOSOME_V assembly_tag Finished 10219737 10219740 . + . Note "Left: C12D8" CHROMOSOME_V assembly_tag Clone 10219837 10219840 . + . Note "right end: ZK856" CHROMOSOME_V assembly_tag Finished 10219837 10219840 . + . Note "Right: ZK856" CHROMOSOME_V assembly_tag annotation 10242013 10242014 . + . Note "4 walks from 4 different M13 subclones cover this region. The 2 negative reads clearly show CT in this position but these bases are missing from the 2 positive reads." CHROMOSOME_V assembly_tag annotation 10247099 10247119 . + . Note "probably 21 C's" CHROMOSOME_V assembly_tag Finished 10255653 10255656 . + . Note "Left: Y22F5A" CHROMOSOME_V assembly_tag Clone 10255753 10255756 . + . Note "right end: C12D8 probably" CHROMOSOME_V assembly_tag Clone 10255753 10255756 . + . Note "right end: C12D8" CHROMOSOME_V assembly_tag Finished 10255753 10255756 . + . Note "Right: C12D8" CHROMOSOME_V assembly_tag Finished 10288140 10288143 . + . Note "Left: B0024" CHROMOSOME_V assembly_tag Clone 10288140 10288143 . + . Note "left end: B0024" CHROMOSOME_V assembly_tag Finished 10288237 10288240 . + . Note "Right: Y22F5A" CHROMOSOME_V assembly_tag Finished 10330193 10330196 . + . Note "Left: Y22F5B" CHROMOSOME_V assembly_tag Finished 10330290 10330293 . + . Note "Right: B0024" CHROMOSOME_V assembly_tag Clone 10330290 10330293 . + . Note "right end: B0024" CHROMOSOME_V assembly_tag Clone 10332214 10332217 . + . Note "left end: K07C5" CHROMOSOME_V assembly_tag Clone 10332214 10332217 . + . Note "left end: K07C5" CHROMOSOME_V assembly_tag Finished 10332214 10332217 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 10332311 10332314 . + . Note "Right: Y22F5B" CHROMOSOME_V assembly_tag annotation 10357250 10357251 . + . Note "One M13 clone had 2 Gs missing here." CHROMOSOME_V assembly_tag annotation 10362288 10362288 . + . Note "One M13 clone had a G in this position, rather than an A (8 other clones)." CHROMOSOME_V assembly_tag Clone 10364619 10364622 . + . Note "left end: AC3" CHROMOSOME_V assembly_tag Clone 10364619 10364622 . + . Note "left end: AC3" CHROMOSOME_V assembly_tag Finished 10364619 10364622 . + . Note "Left: AC3" CHROMOSOME_V assembly_tag Finished 10364719 10364722 . + . Note "Right: K07C5" CHROMOSOME_V assembly_tag Clone 10370130 10370133 . + . Note "right end: K07C5" CHROMOSOME_V assembly_tag Finished 10403467 10403470 . + . Note "Left: F15H10" CHROMOSOME_V assembly_tag Clone 10403567 10403570 . + . Note "right end: AC3" CHROMOSOME_V assembly_tag Finished 10403567 10403570 . + . Note "Right: AC3" CHROMOSOME_V assembly_tag Clone 10403567 10403570 . + . Note "right end: End of AC3" CHROMOSOME_V assembly_tag annotation 10414213 10414213 . + . Note "A single M13 clone had a G in this position. All other reads (10) have A." CHROMOSOME_V assembly_tag Finished 10428866 10428869 . + . Note "Left: Y32F6A" CHROMOSOME_V assembly_tag Clone 10428966 10428969 . + . Note "right end: End of F15H10" CHROMOSOME_V assembly_tag Finished 10428966 10428969 . + . Note "Right: F15H10" CHROMOSOME_V assembly_tag Clone 10428966 10428969 . - . Note "right end: F15H10\n\n\n\n" CHROMOSOME_V assembly_tag Clone 10441733 10441736 . + . Note "left end: F22E12" CHROMOSOME_V assembly_tag annotation 10450999 10452516 . + . Note "This region contins two tandem repeats the assembly of which was confirmed with a resctriction digest of the YAC. 51 copies of 25bp repeat and 21 copies of a 11bp repeat." CHROMOSOME_V assembly_tag Finished 10455988 10455991 . - . Note "Left: F22E12" CHROMOSOME_V assembly_tag Clone 10456088 10456091 . + . Note "right end: K07H11" CHROMOSOME_V assembly_tag Finished 10456098 10456101 . + . Note "Right: Y32F6A" CHROMOSOME_V assembly_tag annotation 10468916 10468916 . + . Note "A single M13 clone had an A in this\nposition rather than a G (7 other\nclones)" CHROMOSOME_V assembly_tag Finished 10472575 10472578 . + . Note "Left: Y32F6B" CHROMOSOME_V assembly_tag Clone 10472675 10472678 . + . Note "right end: F22E12" CHROMOSOME_V assembly_tag Finished 10472675 10472678 . - . Note "Right: F22E12\n" CHROMOSOME_V assembly_tag Clone 10472675 10472678 . - . Note "right end: F22E12\n" CHROMOSOME_V assembly_tag Clone 10489242 10489245 . + . Note "left end: C35A5" CHROMOSOME_V assembly_tag Finished 10489242 10489245 . + . Note "Left: C35A5" CHROMOSOME_V assembly_tag Clone 10489242 10489245 . + . Note "left end: C35A5" CHROMOSOME_V assembly_tag Finished 10489342 10489345 . + . Note "Right: Y32F6B" CHROMOSOME_V assembly_tag Finished 10531169 10531171 . + . Note "Left: F25D1" CHROMOSOME_V assembly_tag Finished 10531269 10531272 . + . Note "Right: C35A5" CHROMOSOME_V assembly_tag Clone 10531269 10531272 . + . Note "right end: C35A5" CHROMOSOME_V assembly_tag Clone 10531269 10531272 . + . Note "right end: C35A5" CHROMOSOME_V assembly_tag Clone 10549012 10549015 . + . Note "left end: f32g8" CHROMOSOME_V assembly_tag Finished 10549012 10549015 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 10549012 10549015 . + . Note "left end: F32G8" CHROMOSOME_V assembly_tag Finished 10549112 10549115 . + . Note "Right: F25D1" CHROMOSOME_V assembly_tag Finished 10567783 10567786 . + . Note "Left: T21C9" CHROMOSOME_V assembly_tag Clone 10567783 10567786 . + . Note "left end: T21C9" CHROMOSOME_V assembly_tag Clone 10567783 10567786 . + . Note "left end: T21C9" CHROMOSOME_V assembly_tag Finished 10567884 10567887 . + . Note "Right: F32G8" CHROMOSOME_V assembly_tag Clone 10585035 10585038 . + . Note "right end: F32G8" CHROMOSOME_V assembly_tag Finished 10605224 10605227 . + . Note "Left: H27A22" CHROMOSOME_V assembly_tag Finished 10605324 10605327 . + . Note "Right: T21C9" CHROMOSOME_V assembly_tag Clone 10605324 10605327 . + . Note "right end: T21C9" CHROMOSOME_V assembly_tag Clone 10605324 10605327 . + . Note "right end: T21C9" CHROMOSOME_V assembly_tag Finished 10606491 10606494 . + . Note "Left: Y24E3A" CHROMOSOME_V assembly_tag Clone 10606588 10606591 . + . Note "right end: H27A22" CHROMOSOME_V assembly_tag Clone 10606588 10606591 . + . Note "right end: H27A22" CHROMOSOME_V assembly_tag Finished 10606588 10606591 . + . Note "Right: H27A22" CHROMOSOME_V assembly_tag annotation 10607289 10607306 . + . Note "The size of the YAC is consistent with\nthe digest but the tandem repeat may \nnot be completely assembled correctly.\n39 bases tandem repeat " CHROMOSOME_V assembly_tag Clone 10614196 10614199 . + . Note "left end: H09F14" CHROMOSOME_V assembly_tag Finished 10614196 10614199 . + . Note "Left: H09F14" CHROMOSOME_V assembly_tag Finished 10614296 10614299 . + . Note "Right: Y24E3A" CHROMOSOME_V assembly_tag annotation 10615321 10615890 . + . Note "bases 7948 - 8517 are covered by a\nsonicated pcr product from the fosmid\ndna.\nSize confirmed by restriction digest." CHROMOSOME_V assembly_tag annotation 10619375 10619408 . + . Note "single clone across bases 12002 - 12035.\nSize confirmed by restriction digest." CHROMOSOME_V assembly_tag annotation 10622764 10622898 . + . Note "single clone across bases 15391 - 15525\nregion confirmed by restriction digest" CHROMOSOME_V assembly_tag Clone 10625043 10625046 . + . Note "left end: C32C4" CHROMOSOME_V assembly_tag Clone 10625043 10625046 . + . Note "left end: C32C4" CHROMOSOME_V assembly_tag Finished 10625043 10625046 . + . Note "Left: C32C4" CHROMOSOME_V assembly_tag Finished 10625143 10625146 . + . Note "Right: H09F14" CHROMOSOME_V assembly_tag Clone 10656725 10656728 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 10656725 10656728 . + . Note "left end: F29F11" CHROMOSOME_V assembly_tag Finished 10656725 10656728 . + . Note "Left: F29F11" CHROMOSOME_V assembly_tag Clone 10656725 10656728 . + . Note "left end: F29F11" CHROMOSOME_V assembly_tag Finished 10656825 10656828 . + . Note "Right: C32C4" CHROMOSOME_V assembly_tag Finished 10692879 10692882 . + . Note "Left: C05A2" CHROMOSOME_V assembly_tag Clone 10692979 10692982 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 10692979 10692982 . + . Note "right end: F29F11" CHROMOSOME_V assembly_tag Finished 10692979 10692982 . + . Note "Right: F29F11" CHROMOSOME_V assembly_tag Clone 10692979 10692982 . + . Note "right end: F29F11" CHROMOSOME_V assembly_tag Clone 10705284 10705287 . + . Note "left end: T28B11" CHROMOSOME_V assembly_tag Clone 10705284 10705287 . + . Note "left end: T28B11" CHROMOSOME_V assembly_tag Finished 10705284 10705287 . + . Note "Left: T28B11" CHROMOSOME_V assembly_tag Finished 10705384 10705387 . + . Note "Right: C05A2" CHROMOSOME_V assembly_tag comment 10717017 10717018 . - . Note "?" CHROMOSOME_V assembly_tag Finished 10729827 10729830 . + . Note "Left: ZC302" CHROMOSOME_V assembly_tag Finished 10729827 10729830 . + . Note "Left: ZC302" CHROMOSOME_V assembly_tag Clone 10729927 10729932 . + . Note "left end: Start of ZC302" CHROMOSOME_V assembly_tag Clone 10729927 10729932 . + . Note "left end: ZC302" CHROMOSOME_V assembly_tag Finished 10730029 10730032 . + . Note "Right: T28B11" CHROMOSOME_V assembly_tag Finished 10730029 10730032 . + . Note "Right: T28B11" CHROMOSOME_V assembly_tag Clone 10742174 10742177 . + . Note "left end: Start of F28H7" CHROMOSOME_V assembly_tag Clone 10742174 10742177 . + . Note "left end: Start of F28H7" CHROMOSOME_V assembly_tag Finished 10742174 10742177 . + . Note "Left: F28H7" CHROMOSOME_V assembly_tag Clone 10742174 10742177 . + . Note "left end: F28H7" CHROMOSOME_V assembly_tag Finished 10742274 10742277 . + . Note "Right: ZC302" CHROMOSOME_V assembly_tag Clone 10747113 10747116 . + . Note "right end: End of T28B11" CHROMOSOME_V assembly_tag Clone 10768437 10768442 . + . Note "right end: End of ZC302" CHROMOSOME_V assembly_tag Clone 10769470 10769473 . + . Note "left end: D1054" CHROMOSOME_V assembly_tag Clone 10769470 10769473 . + . Note "left end: Start of D1054" CHROMOSOME_V assembly_tag Finished 10769470 10769473 . + . Note "Left: D1054" CHROMOSOME_V assembly_tag Finished 10769570 10769573 . + . Note "Right: F28H7" CHROMOSOME_V assembly_tag Clone 10782386 10782389 . + . Note "right end: F28H7" CHROMOSOME_V assembly_tag Clone 10808581 10808584 . + . Note "left end: C29A12" CHROMOSOME_V assembly_tag Finished 10808581 10808584 . + . Note "Left: C29A12" CHROMOSOME_V assembly_tag Clone 10808581 10808584 . + . Note "left end: Start of C29A12" CHROMOSOME_V assembly_tag Finished 10808681 10808684 . + . Note "Right: D1054" CHROMOSOME_V assembly_tag Clone 10813578 10813581 . + . Note "right end: End of D1054" CHROMOSOME_V assembly_tag Finished 10849883 10849886 . + . Note "Left: F53H10" CHROMOSOME_V assembly_tag Clone 10849983 10849986 . + . Note "right end: End of C29A12" CHROMOSOME_V assembly_tag Finished 10849983 10849986 . + . Note "Right: C29A12" CHROMOSOME_V assembly_tag Clone 10849983 10849986 . + . Note "right end: END OF C29A12" CHROMOSOME_V assembly_tag Clone 10872692 10872694 . + . Note "left end: Start of F32D8" CHROMOSOME_V assembly_tag Clone 10872692 10872694 . + . Note "left end: Start of F32D8" CHROMOSOME_V assembly_tag Finished 10872692 10872695 . + . Note "Left: F32D8" CHROMOSOME_V assembly_tag Clone 10872695 10872695 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 10872695 10872695 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 10872795 10872798 . + . Note "Right: F53H10" CHROMOSOME_V assembly_tag Clone 10898557 10898560 . + . Note "left end: START OF C13D6" CHROMOSOME_V assembly_tag comment 10912100 10912134 . + . Note "START HERE!!!!!" CHROMOSOME_V assembly_tag Finished 10912104 10912107 . + . Note "Left: F58B4" CHROMOSOME_V assembly_tag Finished 10912207 10912210 . + . Note "Right: F32D8" CHROMOSOME_V assembly_tag Clone 10912207 10912210 . + . Note "right end: End of F32D8" CHROMOSOME_V assembly_tag Clone 10912207 10912210 . + . Note "right end: END OF F32D8" CHROMOSOME_V assembly_tag Finished 10935861 10935864 . + . Note "Left: F17C11" CHROMOSOME_V assembly_tag Clone 10935861 10935864 . + . Note "left end: START OF F17C11" CHROMOSOME_V assembly_tag Clone 10935861 10935864 . + . Note "left end: F17C11" CHROMOSOME_V assembly_tag Finished 10935961 10935964 . + . Note "Right: F58B4" CHROMOSOME_V assembly_tag Clone 10972794 10972797 . + . Note "left end: F53B7" CHROMOSOME_V assembly_tag Clone 10972794 10972797 . + . Note "left end: F53B7" CHROMOSOME_V assembly_tag Finished 10972794 10972797 . + . Note "Left: F53B7" CHROMOSOME_V assembly_tag Finished 10972894 10972897 . + . Note "Right: F17C11" CHROMOSOME_V assembly_tag Clone 10981336 10981339 . + . Note "right end: F17C11" CHROMOSOME_V assembly_tag Finished 11008645 11008648 . + . Note "Left: C13G3" CHROMOSOME_V assembly_tag Clone 11008745 11008748 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 11008745 11008748 . + . Note "right end: F53B7" CHROMOSOME_V assembly_tag Finished 11008745 11008748 . + . Note "Right: F53B7" CHROMOSOME_V assembly_tag Clone 11038280 11038283 . + . Note "left end: C45B11" CHROMOSOME_V assembly_tag Clone 11038280 11038283 . + . Note "left end: C45B11" CHROMOSOME_V assembly_tag Finished 11038280 11038283 . + . Note "Left: C45B11" CHROMOSOME_V assembly_tag Finished 11038380 11038383 . + . Note "Right: C13G3" CHROMOSOME_V assembly_tag annotation 11045987 11045992 . + . Note "A single M13 read across this region has an extra GT in this position, GAGTGTGTC. All other M13 reads (8) have the sequence GAGTGTC." CHROMOSOME_V assembly_tag Clone 11046722 11046725 . + . Note "right end: C13G3" CHROMOSOME_V assembly_tag Clone 11053665 11053668 . + . Note "left end: T04C12" CHROMOSOME_V assembly_tag Clone 11053665 11053668 . + . Note "left end: T04C12" CHROMOSOME_V assembly_tag Finished 11053665 11053668 . + . Note "Left: T04C12" CHROMOSOME_V assembly_tag Finished 11053765 11053768 . + . Note "Right: C45B11" CHROMOSOME_V assembly_tag Clone 11083252 11083255 . + . Note "right end: C45B11" CHROMOSOME_V assembly_tag annotation 11084908 11084968 . + . Note "single sub-clone across bases 31244 -\n31304. Confirmed by restriction digest " CHROMOSOME_V assembly_tag Clone 11088882 11088885 . + . Note "right end: T04C12" CHROMOSOME_V assembly_tag Finished 11088882 11088885 . + . Note "Right: T04C12" CHROMOSOME_V assembly_tag Finished 11111234 11111237 . + . Note "Left: H19N07" CHROMOSOME_V assembly_tag Clone 11111234 11111237 . + . Note "left end: H19N07" CHROMOSOME_V assembly_tag Finished 11123097 11123100 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11123097 11123100 . + . Note "left end: C06H2" CHROMOSOME_V assembly_tag Clone 11123097 11123100 . + . Note "left end: C06H2" CHROMOSOME_V assembly_tag Finished 11123196 11123199 . - . Note "Right: H19N07" CHROMOSOME_V assembly_tag Finished 11147279 11147282 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11147279 11147282 . + . Note "left end: T19C4" CHROMOSOME_V assembly_tag Clone 11147279 11147282 . + . Note "left end: T19C4" CHROMOSOME_V assembly_tag Finished 11147372 11147377 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 11166847 11166861 . + . Note "Polymorphic run of C's, T19C4 calls 15, C06H2 16." CHROMOSOME_V assembly_tag annotation 11167166 11167166 . + . Note "one clone reads 4 Ts. possible clone mutation" CHROMOSOME_V assembly_tag Clone 11168414 11168417 . + . Note "right end: ?C06H2" CHROMOSOME_V assembly_tag annotation 11180003 11180007 . + . Note "Put in 5 T's... One read wv70f3.s1 and .s1t says 6 T's." CHROMOSOME_V assembly_tag Finished 11181281 11181285 . + . Note "Left: VK10D6R" CHROMOSOME_V assembly_tag Finished 11181381 11181384 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11181381 11181384 . + . Note "right end: T19C4" CHROMOSOME_V assembly_tag Clone 11181381 11181384 . - . Note "right end: T19C4" CHROMOSOME_V assembly_tag annotation 11182010 11182010 . + . Note "Could be either a G or an A" CHROMOSOME_V assembly_tag Clone 11189377 11189380 . + . Note "left end: K10D6" CHROMOSOME_V assembly_tag Clone 11189377 11189380 . + . Note "left end: K10D6" CHROMOSOME_V assembly_tag Finished 11189377 11189380 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11189481 11189484 . - . Note "Right: VK10D6R" CHROMOSOME_V assembly_tag Clone 11219764 11219767 . + . Note "left end: T19B10" CHROMOSOME_V assembly_tag Finished 11219764 11219767 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11219764 11219767 . + . Note "left end: T19B10" CHROMOSOME_V assembly_tag Finished 11219867 11219870 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 11253691 11253694 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11253691 11253694 . + . Note "left end: F07B10" CHROMOSOME_V assembly_tag Clone 11255648 11255651 . + . Note "right end: T19B10" CHROMOSOME_V assembly_tag Finished 11255648 11255651 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11255648 11255651 . - . Note "right end: T19B10" CHROMOSOME_V assembly_tag Clone 11271189 11271192 . + . Note "left end: C03E10" CHROMOSOME_V assembly_tag Finished 11271189 11271192 . + . Note "Left: C03E10" CHROMOSOME_V assembly_tag Clone 11271189 11271192 . + . Note "left end: C03E10" CHROMOSOME_V assembly_tag Finished 11271288 11271292 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11286357 11286360 . - . Note "right end: F07B10" CHROMOSOME_V assembly_tag annotation 11288008 11288008 . + . Note "single clone reads CC another reads CCC\n\nrewrite!!!" CHROMOSOME_V assembly_tag Clone 11295317 11295320 . + . Note "left end: T03F7" CHROMOSOME_V assembly_tag Finished 11295317 11295321 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11295414 11295420 . - . Note "Right: C03E10" CHROMOSOME_V assembly_tag Clone 11314747 11314750 . + . Note "right end: End of C03E10" CHROMOSOME_V assembly_tag Clone 11316577 11316580 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 11316577 11316580 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11316577 11316580 . + . Note "left end: F47G9" CHROMOSOME_V assembly_tag Finished 11316677 11316682 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11327404 11327408 . + . Note "right end: T03F7" CHROMOSOME_V assembly_tag Finished 11335042 11335045 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11335042 11335045 . + . Note "left end: T02E9" CHROMOSOME_V assembly_tag Clone 11335042 11335045 . + . Note "left end: T02E9" CHROMOSOME_V assembly_tag Finished 11335144 11335148 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11351205 11351208 . - . Note "right end: F47G9" CHROMOSOME_V assembly_tag Finished 11369197 11369200 . + . Note "Left: F55C10" CHROMOSOME_V assembly_tag Clone 11369197 11369200 . + . Note "left end: F55C10" CHROMOSOME_V assembly_tag Clone 11369197 11369200 . + . Note "left end: F55C10" CHROMOSOME_V assembly_tag Finished 11369299 11369304 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11370254 11370257 . - . Note "right end: T02E9" CHROMOSOME_V assembly_tag annotation 11387709 11387709 . + . Note "Apparent mutation during cosmid growth.Subsequent colony pooling gives G/A \nhere" CHROMOSOME_V assembly_tag annotation 11390466 11391054 . - . Note "Digest suggests this repeated area between 26399 & 27372 should be about 1kb\nlonger.The digest was done on cosmid\nDNA using Ava1 and BamH1 enzymes " CHROMOSOME_V assembly_tag annotation 11391055 11391055 . + . CHROMOSOME_V assembly_tag annotation 11391056 11391113 . - . Note "Digest suggests this repeated area between 26399 & 27372 should be about 1kb\nlonger.The digest was done on cosmid\nDNA using Ava1 and BamH1 enzymes" CHROMOSOME_V assembly_tag Clone 11391245 11391248 . + . Note "left end: K03B8" CHROMOSOME_V assembly_tag Clone 11391245 11391248 . + . Note "left end: K03B8" CHROMOSOME_V assembly_tag Finished 11391245 11391248 . + . Note "Left: " CHROMOSOME_V assembly_tag annotation 11391117 11391347 . - . Note "Digest suggests this repeated area between 26399 & 27372 should be about 1kb\nlonger.The digest was done on cosmid DNA using Ava1 and BamH1 enzymes" CHROMOSOME_V assembly_tag Finished 11391344 11391347 . - . Note "Right: F55C10" CHROMOSOME_V assembly_tag Clone 11408375 11408378 . + . Note "right end: F55C10" CHROMOSOME_V assembly_tag Clone 11420267 11420270 . + . Note "left end: T26H10" CHROMOSOME_V assembly_tag Clone 11420267 11420270 . + . Note "left end: T26H10" CHROMOSOME_V assembly_tag Finished 11420267 11420270 . + . Note "Left: T26H10" CHROMOSOME_V assembly_tag Finished 11420372 11420376 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11430724 11430727 . + . Note "right end: K03B8" CHROMOSOME_V assembly_tag Clone 11436150 11436153 . + . Note "left end: F57B7" CHROMOSOME_V assembly_tag Finished 11436150 11436153 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11436150 11436153 . + . Note "left end: Left Hand End F57B7" CHROMOSOME_V assembly_tag Finished 11436253 11436256 . + . Note "Right: T26H10" CHROMOSOME_V assembly_tag Clone 11456244 11456247 . + . Note "right end: Right Hand End T26H10" CHROMOSOME_V assembly_tag Clone 11459581 11459584 . + . Note "left end: Left Hand End T11F9" CHROMOSOME_V assembly_tag Clone 11459581 11459584 . + . Note "left end: T11F9" CHROMOSOME_V assembly_tag Finished 11459581 11459584 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11459682 11459685 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11474734 11474737 . + . Note "right end: F57B7" CHROMOSOME_V assembly_tag Finished 11497195 11497198 . + . Note "Left: H21M04" CHROMOSOME_V assembly_tag Finished 11497291 11497294 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11497291 11497294 . + . Note "right end: T11F9" CHROMOSOME_V assembly_tag Clone 11497291 11497294 . - . Note "right end: T11F9" CHROMOSOME_V assembly_tag Clone 11498973 11498976 . + . Note "left end: C55A6" CHROMOSOME_V assembly_tag Finished 11498973 11498976 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11498973 11498976 . + . Note "left end: C55A6" CHROMOSOME_V assembly_tag Finished 11499069 11499072 . - . Note "Right: H21M04" CHROMOSOME_V assembly_tag annotation 11505612 11505763 . + . Note "single phagemid clone confirmed by \ndigest with HindIII and PvuI" CHROMOSOME_V assembly_tag annotation 11506710 11506711 . + . Note "bases unclear" CHROMOSOME_V assembly_tag annotation 11506719 11506719 . + . Note "there may be no base here -\njust CCCCGAG" CHROMOSOME_V assembly_tag Clone 11528650 11528653 . + . Note "left end: Left Hand End F38B7" CHROMOSOME_V assembly_tag Clone 11528650 11528653 . + . Note "left end: F38B7" CHROMOSOME_V assembly_tag Finished 11528650 11528653 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11528751 11528758 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11542164 11542167 . + . Note "right end: Right Hand End C55A6" CHROMOSOME_V assembly_tag Finished 11568667 11568670 . + . Note "Left: H12C20" CHROMOSOME_V assembly_tag Finished 11568763 11568766 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11568763 11568766 . + . Note "right end: Right Hand End F38B7" CHROMOSOME_V assembly_tag Clone 11568763 11568766 . - . Note "right end: F38B7" CHROMOSOME_V assembly_tag annotation 11576128 11576257 . + . Note "[ ] Tandem repeat \n[x] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_V assembly_tag annotation 11580309 11580331 . + . Note "[ ] Tandem repeat \n[x] Single clone region \n[ ] Forced join \n[ ] Other \nComment\n" CHROMOSOME_V assembly_tag Clone 11584683 11584686 . + . Note "left end: Left Hand End F43A11" CHROMOSOME_V assembly_tag Clone 11584683 11584686 . + . Note "left end: F43A11" CHROMOSOME_V assembly_tag Finished 11584683 11584686 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11584779 11584782 . - . Note "Right: H12C20" CHROMOSOME_V assembly_tag Clone 11600192 11600195 . + . Note "left end: Left Hand End F35B12" CHROMOSOME_V assembly_tag Finished 11600192 11600195 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11600192 11600195 . + . Note "left end: F35B12" CHROMOSOME_V assembly_tag Finished 11600292 11600296 . + . Note "Right: " CHROMOSOME_V assembly_tag ambiguous 11600732 11600751 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag stop 11600876 11600878 . + . CHROMOSOME_V assembly_tag ambiguous 11602741 11602741 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag stop 11602823 11602825 . + . CHROMOSOME_V assembly_tag ambiguous 11603857 11603857 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11604652 11604652 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11604994 11604994 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag stop 11605494 11605496 . + . CHROMOSOME_V assembly_tag ambiguous 11607037 11607058 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 11607101 11607101 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11607204 11607204 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11607572 11607572 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11607575 11607575 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag stop 11609202 11609206 . + . CHROMOSOME_V assembly_tag ambiguous 11609933 11609933 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_V assembly_tag stop 11610047 11610049 . + . CHROMOSOME_V assembly_tag stop 11610241 11610244 . + . CHROMOSOME_V assembly_tag stop 11611223 11611228 . + . CHROMOSOME_V assembly_tag stop 11611407 11611409 . + . CHROMOSOME_V assembly_tag stop 11611513 11611516 . + . CHROMOSOME_V assembly_tag ambiguous 11611549 11611549 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11612131 11612131 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11612274 11612274 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11612648 11612654 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 11612743 11612743 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11612853 11612853 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_V assembly_tag ambiguous 11612861 11612861 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag stop 11613069 11613072 . + . CHROMOSOME_V assembly_tag stop 11613156 11613159 . + . CHROMOSOME_V assembly_tag ambiguous 11613190 11613190 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11613206 11613212 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 11613256 11613256 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_V assembly_tag ambiguous 11613258 11613258 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_V assembly_tag ambiguous 11613593 11613615 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag ambiguous 11613845 11613845 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11614049 11614049 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11614704 11614704 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_V assembly_tag stop 11615651 11615654 . + . CHROMOSOME_V assembly_tag stop 11615725 11615729 . + . CHROMOSOME_V assembly_tag ambiguous 11615948 11615948 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11617679 11617679 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11617791 11617791 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11617792 11617792 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag stop 11619769 11619771 . + . CHROMOSOME_V assembly_tag ambiguous 11620446 11620446 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11620793 11620793 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11620956 11620956 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11621147 11621147 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11621148 11621148 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11621277 11621277 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11621284 11621284 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11621396 11621396 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11621456 11621456 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11622147 11622147 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11622464 11622464 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11622465 11622465 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11622901 11622901 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11623003 11623003 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag Clone 11623985 11623988 . + . Note "right end: F43A11" CHROMOSOME_V assembly_tag oligo 11624658 11624675 . + . Note "serial#=F35-04 sequence=GATATTTGGATCAACCGC flags=" CHROMOSOME_V assembly_tag stop 11625101 11625105 . + . CHROMOSOME_V assembly_tag oligo 11625265 11625281 . + . Note "serial#=F35-02 template=wq38h12.s1l sequence=GGAGTAGGAGAAAATGG flags=" CHROMOSOME_V assembly_tag stop 11625480 11625484 . + . CHROMOSOME_V assembly_tag oligo 11625514 11625530 . + . Note "serial#=F35-01 sequence=GGCAGTTTTGCATCACC flags=" CHROMOSOME_V assembly_tag ambiguous 11626322 11626322 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag stop 11626520 11626522 . + . CHROMOSOME_V assembly_tag ambiguous 11626976 11626976 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11627086 11627086 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11627087 11627087 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11627562 11627562 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag oligo 11627861 11627877 . + . Note "serial#=F35-03 template=wq35h1.s1 sequence=TTCCGCATTTGAGAAGG flags=" CHROMOSOME_V assembly_tag comment 11627927 11627932 . + . Note "?should be wq37d3.s2t3" CHROMOSOME_V assembly_tag stop 11629678 11629681 . + . CHROMOSOME_V assembly_tag ambiguous 11630037 11630037 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11630461 11630461 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag stop 11630619 11630622 . + . CHROMOSOME_V assembly_tag ambiguous 11631494 11631494 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11631506 11631506 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11631533 11631533 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11631739 11631739 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11631740 11631740 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11631908 11631908 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11632363 11632363 . + . Note "AUTOEDIT: Check this edit stack!" CHROMOSOME_V assembly_tag ambiguous 11633003 11633003 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11633005 11633005 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11633363 11633363 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11633398 11633398 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11633519 11633519 . + . Note "AUTOEDIT: Check this edit stack (conflict & possible misassembly))!" CHROMOSOME_V assembly_tag ambiguous 11633583 11633587 . + . Note "AUTOEDIT: Check this edit cluster!" CHROMOSOME_V assembly_tag Clone 11634666 11634669 . + . Note "left end: Left Hand End T27F2" CHROMOSOME_V assembly_tag Clone 11634666 11634669 . + . Note "left end: T27F2" CHROMOSOME_V assembly_tag Finished 11634666 11634669 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11634773 11634776 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11642705 11642708 . + . Note "right end: Right Hand End F35B12" CHROMOSOME_V assembly_tag Finished 11656025 11656028 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11656025 11656028 . + . Note "left end: F46F3" CHROMOSOME_V assembly_tag Clone 11656025 11656028 . + . Note "left end: Left Hand End F46F3" CHROMOSOME_V assembly_tag Finished 11656129 11656132 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11676598 11676601 . - . Note "right end: T27F2" CHROMOSOME_V assembly_tag annotation 11687216 11687217 . + . Note "Ambiguous calling of data could be\nGG or a combination of AG." CHROMOSOME_V assembly_tag Finished 11687224 11687227 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11687224 11687229 . + . Note "left end: W05E10" CHROMOSOME_V assembly_tag Finished 11687326 11687330 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 11688923 11688923 . + . Note "W05E10 reads call C\nF46F3 reads call T" CHROMOSOME_V assembly_tag annotation 11688923 11688923 . + . Note "W05E10 reads calls C\nF46F3 reads call T" CHROMOSOME_V assembly_tag Clone 11718391 11718394 . + . Note "left end: B0240" CHROMOSOME_V assembly_tag Clone 11718391 11718394 . + . Note "left end: B0240" CHROMOSOME_V assembly_tag Finished 11718391 11718394 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11718491 11718496 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11720216 11720219 . + . Note "right end: W05E10" CHROMOSOME_V assembly_tag Clone 11750626 11750629 . + . Note "left end: T04F3" CHROMOSOME_V assembly_tag Clone 11750626 11750629 . + . Note "left end: T04F3" CHROMOSOME_V assembly_tag Finished 11750626 11750629 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11750732 11750736 . + . Note "Right: " CHROMOSOME_V assembly_tag comment 11751982 11751984 . + . Note "?" CHROMOSOME_V assembly_tag Clone 11762069 11762072 . + . Note "right end: B0240" CHROMOSOME_V assembly_tag comment 11765006 11765014 . + . Note "T04F3 diverges here." CHROMOSOME_V assembly_tag Finished 11765006 11765014 . + . Note "Left: " CHROMOSOME_V assembly_tag repeat 11765006 11765166 . + . Note "?" CHROMOSOME_V assembly_tag comment 11765035 11765043 . + . Note "this is the first read of F55A11" CHROMOSOME_V assembly_tag Finished 11765142 11765149 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11786428 11786431 . + . Note "right end: T04F3" CHROMOSOME_V assembly_tag Clone 11792548 11792551 . + . Note "left end: D2023" CHROMOSOME_V assembly_tag Clone 11792548 11792551 . + . Note "left end: D2023" CHROMOSOME_V assembly_tag Finished 11792548 11792551 . + . Note "Left: D2023" CHROMOSOME_V assembly_tag Finished 11792598 11792603 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11798872 11798875 . - . Note "right end: F55A11" CHROMOSOME_V assembly_tag annotation 11817141 11817141 . + . Note "uncertain base" CHROMOSOME_V assembly_tag annotation 11817147 11817147 . + . Note "could be G" CHROMOSOME_V assembly_tag annotation 11817175 11817175 . + . Note "could be T" CHROMOSOME_V assembly_tag annotation 11817218 11817218 . + . Note "this base may be a C" CHROMOSOME_V assembly_tag annotation 11817918 11817939 . + . Note "probably 22 Cs but could be less." CHROMOSOME_V assembly_tag Clone 11832787 11832792 . + . Note "left end: R13H4" CHROMOSOME_V assembly_tag Finished 11832787 11832792 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11832787 11832792 . - . Note "left end: R13H4" CHROMOSOME_V assembly_tag Finished 11832886 11832891 . - . Note "Right: D2023" CHROMOSOME_V assembly_tag Clone 11833943 11833946 . - . Note "right end: D2023" CHROMOSOME_V assembly_tag Finished 11871182 11871185 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11871182 11871185 . + . Note "left end: K12G11" CHROMOSOME_V assembly_tag Clone 11871182 11871185 . + . Note "left end: K12G11" CHROMOSOME_V assembly_tag Finished 11871283 11871290 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11876090 11876095 . - . Note "right end: R13H4" CHROMOSOME_V assembly_tag Clone 11908509 11908514 . + . Note "left end: R31" CHROMOSOME_V assembly_tag Clone 11908509 11908514 . + . Note "left end: R31" CHROMOSOME_V assembly_tag Finished 11908509 11908514 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11908609 11908618 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11928679 11928682 . + . Note "left end: F58H1" CHROMOSOME_V assembly_tag Clone 11928679 11928682 . + . Note "left end: Left Hand End F58H1" CHROMOSOME_V assembly_tag Finished 11928679 11928682 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11928784 11928787 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 11948688 11948693 . + . Note "right end: Right Hand End R31" CHROMOSOME_V assembly_tag Clone 11965577 11965580 . + . Note "left end: C52E4" CHROMOSOME_V assembly_tag Clone 11965577 11965580 . + . Note "left end: Left Hand End C52E4" CHROMOSOME_V assembly_tag Finished 11965577 11965580 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 11965688 11965691 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 11967783 11967786 . - . Note "right end: F58H1" CHROMOSOME_V assembly_tag annotation 11987814 11987814 . + . Note "one clone calls a G but edited to the majority\nwhich is A." CHROMOSOME_V assembly_tag Finished 11998555 11998558 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 11998555 11998558 . + . Note "left end: F57F5" CHROMOSOME_V assembly_tag Clone 11998555 11998558 . + . Note "left end: F57F5" CHROMOSOME_V assembly_tag Finished 11998662 11998665 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 12009295 12009298 . + . Note "right end: C52E4" CHROMOSOME_V assembly_tag Finished 12024293 12024296 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12024293 12024296 . + . Note "left end: F10C2" CHROMOSOME_V assembly_tag Clone 12024293 12024296 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 12024391 12024396 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12036798 12036801 . - . Note "right end: RHE F57F5" CHROMOSOME_V assembly_tag Clone 12059985 12059990 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 12059985 12059990 . + . Note "left end: R07B7" CHROMOSOME_V assembly_tag Finished 12059985 12059990 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12060093 12060096 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 12061256 12061259 . + . Note "right end: F10C2" CHROMOSOME_V assembly_tag Finished 12103348 12103353 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12103448 12103453 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12103448 12103453 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 12103448 12103453 . - . Note "right end: R07B7" CHROMOSOME_V assembly_tag Clone 12128240 12128243 . + . Note "left end: C27A7" CHROMOSOME_V assembly_tag Clone 12128240 12128243 . + . Note "left end: C27A7" CHROMOSOME_V assembly_tag Finished 12128240 12128243 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12128340 12128349 . - . Note "Right: " CHROMOSOME_V assembly_tag Finished 12166651 12166654 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12166750 12166753 . + . Note "right end: C27A7" CHROMOSOME_V assembly_tag Finished 12166750 12166753 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12166750 12166753 . - . Note "right end: C27A7 RHE" CHROMOSOME_V assembly_tag Clone 12168507 12168510 . + . Note "left end: ZK863 LHE" CHROMOSOME_V assembly_tag Clone 12168507 12168510 . + . Note "left end: ZK863" CHROMOSOME_V assembly_tag Finished 12168507 12168510 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12168611 12168614 . - . Note "Right: " CHROMOSOME_V assembly_tag Finished 12168612 12168615 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 12169024 12169024 . + . Note "1 clone reads CCGGCT here" CHROMOSOME_V assembly_tag Clone 12196137 12196140 . + . Note "left end: ZK836" CHROMOSOME_V assembly_tag Clone 12196137 12196140 . + . Note "left end: ZK836" CHROMOSOME_V assembly_tag Finished 12196137 12196140 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12196243 12196252 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12205951 12205954 . - . Note "right end: ZK863" CHROMOSOME_V assembly_tag Clone 12222992 12222995 . + . Note "left end: K12F2" CHROMOSOME_V assembly_tag Finished 12222992 12222995 . + . Note "Left: K12F2" CHROMOSOME_V assembly_tag Clone 12222992 12222995 . + . Note "left end: K12F2" CHROMOSOME_V assembly_tag Finished 12223092 12223098 . - . Note "Right: ZK836" CHROMOSOME_V assembly_tag Clone 12232205 12232208 . - . Note "right end: ZK836" CHROMOSOME_V assembly_tag Clone 12235889 12235892 . + . Note "left end: T04H1" CHROMOSOME_V assembly_tag Finished 12235889 12235892 . + . Note "Left: T04H1" CHROMOSOME_V assembly_tag Clone 12235889 12235892 . + . Note "left end: T04H1" CHROMOSOME_V assembly_tag Finished 12235987 12235990 . - . Note "Right: K12F2" CHROMOSOME_V assembly_tag Clone 12262420 12262423 . - . Note "right end: K12F2" CHROMOSOME_V assembly_tag Finished 12263694 12263697 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12263694 12263697 . + . Note "left end: F55C5" CHROMOSOME_V assembly_tag Clone 12263694 12263697 . + . Note "left end: F55C5" CHROMOSOME_V assembly_tag Finished 12263793 12263796 . - . Note "Right: T04H1" CHROMOSOME_V assembly_tag Clone 12274611 12274614 . - . Note "right end: T04H1" CHROMOSOME_V assembly_tag Finished 12304143 12304146 . + . Note "Left: C51F7" CHROMOSOME_V assembly_tag Clone 12304243 12304246 . - . Note "right end: F55C5" CHROMOSOME_V assembly_tag Finished 12304243 12304246 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 12304243 12304246 . - . Note "right end: F55C5" CHROMOSOME_V assembly_tag Clone 12309565 12309570 . + . Note "left end: R04F11" CHROMOSOME_V assembly_tag Clone 12309565 12309570 . + . Note "left end: R04F11" CHROMOSOME_V assembly_tag Finished 12309565 12309570 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12309663 12309666 . - . Note "Right: C51F7" CHROMOSOME_V assembly_tag Clone 12342425 12342428 . + . Note "left end: F23H12" CHROMOSOME_V assembly_tag Finished 12342425 12342428 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12342425 12342428 . + . Note "left end: F23H12" CHROMOSOME_V assembly_tag Finished 12342525 12342539 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12350793 12350798 . + . Note "right end: R04F11" CHROMOSOME_V assembly_tag Clone 12377887 12377890 . + . Note "left end: K01D12" CHROMOSOME_V assembly_tag Finished 12377887 12377890 . + . Note "Left: K01D12" CHROMOSOME_V assembly_tag Clone 12377887 12377890 . + . Note "left end: K01D12" CHROMOSOME_V assembly_tag Finished 12377982 12377988 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12382791 12382794 . + . Note "right end: F23H12" CHROMOSOME_V assembly_tag Clone 12410647 12410650 . + . Note "left end: C54D10" CHROMOSOME_V assembly_tag Finished 12410647 12410650 . + . Note "Left: C54D10" CHROMOSOME_V assembly_tag Finished 12414857 12414860 . + . Note "Right: K01D12" CHROMOSOME_V assembly_tag Clone 12414857 12414860 . + . Note "right end: K01D12" CHROMOSOME_V assembly_tag Clone 12414857 12414860 . + . Note "right end: K01D12" CHROMOSOME_V assembly_tag Clone 12450999 12451002 . + . Note "left end: F28C1" CHROMOSOME_V assembly_tag Finished 12450999 12451002 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12450999 12451002 . + . Note "left end: F28C1" CHROMOSOME_V assembly_tag Finished 12451093 12451096 . + . Note "Right: C54D10" CHROMOSOME_V assembly_tag Clone 12452015 12452018 . + . Note "right end: C54D10" CHROMOSOME_V assembly_tag annotation 12464810 12465002 . + . Note "multiple copies of the GA doublet. because of the repetative nature of the sequence the number of copies cannot be guarenteed. Ava1 restriction fragment size from cosmid DNA corresponding to this region is approx 4411." CHROMOSOME_V assembly_tag Clone 12473342 12473349 . + . Note "left end: W04D2" CHROMOSOME_V assembly_tag Finished 12473342 12473349 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12473342 12473349 . + . Note "left end: W04D2" CHROMOSOME_V assembly_tag Finished 12473444 12473450 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12483161 12483164 . + . Note "right end: F28C1" CHROMOSOME_V assembly_tag Clone 12500325 12500328 . + . Note "left end: T28H10" CHROMOSOME_V assembly_tag Clone 12500325 12500328 . + . Note "left end: T28H10" CHROMOSOME_V assembly_tag Finished 12500325 12500328 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12500436 12500439 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12508640 12508643 . + . Note "right end: W04D2" CHROMOSOME_V assembly_tag annotation 12511565 12512007 . + . Note "this region: tandem reapeat of 9 bases TAGGTAGTC. digest shows there is 7-9kb missing from this region. there is evidence of cosmid deletion. digest shows insert of about 26kb." CHROMOSOME_V assembly_tag Finished 12515236 12515239 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 12515236 12515239 . + . Note "Left: C13C12" CHROMOSOME_V assembly_tag Clone 12515236 12515239 . + . Note "right end: T28H10" CHROMOSOME_V assembly_tag Clone 12515236 12515239 . - . Note "right end: T28H10" CHROMOSOME_V assembly_tag Clone 12528555 12528558 . + . Note "left end: F45D3" CHROMOSOME_V assembly_tag Clone 12528555 12528558 . + . Note "left end: F45D3" CHROMOSOME_V assembly_tag Clone 12528555 12528558 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 12528555 12528558 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12528656 12528659 . - . Note "Right: C13C12" CHROMOSOME_V assembly_tag comment 12541291 12541302 . + . Note "?diverges" CHROMOSOME_V assembly_tag Finished 12565881 12565881 . + . Note "Left: E02A10" CHROMOSOME_V assembly_tag Clone 12565985 12565987 . + . Note "right end: F45D3" CHROMOSOME_V assembly_tag Clone 12565985 12565988 . - . Note "right end: F45D3" CHROMOSOME_V assembly_tag Finished 12565985 12565988 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 12576286 12576304 . - . Note "variable number (17-18) of Ts\nacross this region" CHROMOSOME_V assembly_tag annotation 12576764 12576768 . - . Note "single read has run of 6 As" CHROMOSOME_V assembly_tag Finished 12589673 12589673 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12589673 12589676 . + . Note "left end: C14C10" CHROMOSOME_V assembly_tag Clone 12589673 12589676 . - . Note "left end: C14C10" CHROMOSOME_V assembly_tag Finished 12589769 12589769 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 12609075 12609075 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12609075 12609080 . + . Note "left end: ZC116" CHROMOSOME_V assembly_tag Clone 12609075 12609080 . + . Note "left end: ZC116" CHROMOSOME_V assembly_tag Finished 12609180 12609180 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12625637 12625640 . + . Note "right end: C14C10" CHROMOSOME_V assembly_tag Finished 12625847 12625847 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12625847 12625850 . + . Note "left end: F56H9" CHROMOSOME_V assembly_tag Clone 12625847 12625850 . + . Note "left end: F56H9" CHROMOSOME_V assembly_tag Finished 12625947 12625947 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 12634638 12634638 . + . Note "base has primer and terminator (walks and universal primer) reads. The term spacing suggests a base here, and primer sequencing suggests a G. However none of the terms show a clear base, so there is an element of doubt about the identity of this base" CHROMOSOME_V assembly_tag Clone 12643955 12643960 . + . Note "right end: ZC116" CHROMOSOME_V assembly_tag annotation 12650239 12650245 . + . Note "single template over these 7 bases" CHROMOSOME_V assembly_tag Clone 12654039 12654046 . + . Note "left end: W05B10 Not I site" CHROMOSOME_V assembly_tag Finished 12654041 12654041 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12654041 12654046 . + . Note "left end: W05B10" CHROMOSOME_V assembly_tag Finished 12654137 12654137 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12666178 12666181 . + . Note "right end: F56H9" CHROMOSOME_V assembly_tag Finished 12682968 12682968 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12682968 12682971 . + . Note "left end: Left hand end of K10C8." CHROMOSOME_V assembly_tag Clone 12682968 12682971 . + . Note "left end: K01C8" CHROMOSOME_V assembly_tag Finished 12683071 12683071 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12688160 12688163 . + . Note "right end: Right hand end of W05B10." CHROMOSOME_V assembly_tag Finished 12703944 12703944 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12703944 12703949 . + . Note "left end: Left hand end of R11D1." CHROMOSOME_V assembly_tag Clone 12703944 12703949 . + . Note "left end: Left hand end of R11D1." CHROMOSOME_V assembly_tag Finished 12704044 12704044 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12716894 12716897 . + . Note "right end: K10C8" CHROMOSOME_V assembly_tag Finished 12734537 12734537 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12734537 12734540 . + . Note "left end: C15C8" CHROMOSOME_V assembly_tag Clone 12734537 12734540 . + . Note "left end: Left hand end of C15C8." CHROMOSOME_V assembly_tag Finished 12734641 12734641 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12738867 12738872 . + . Note "right end: Right hand end of R11D1." CHROMOSOME_V assembly_tag Finished 12755213 12755213 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12755213 12755216 . + . Note "left end: Left hand end of F18E2" CHROMOSOME_V assembly_tag Clone 12755213 12755216 . + . Note "left end: F18E2" CHROMOSOME_V assembly_tag Finished 12755316 12755316 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 12766208 12766213 . + . Note "Single read shows 7 A's instead of 6." CHROMOSOME_V assembly_tag annotation 12769529 12769529 . + . Note "Single read has this A deleted to give GAGG instead of GAGAG " CHROMOSOME_V assembly_tag Clone 12779589 12779592 . + . Note "right end: C15C8" CHROMOSOME_V assembly_tag Finished 12780433 12780433 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12780433 12780438 . + . Note "left end: ZC455" CHROMOSOME_V assembly_tag Clone 12780433 12780438 . + . Note "left end: ZC455" CHROMOSOME_V assembly_tag Finished 12780533 12780533 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12795315 12795318 . + . Note "right end: F18E2" CHROMOSOME_V assembly_tag annotation 12808430 12808434 . + . Note "point mutation/ deleted A on single read" CHROMOSOME_V assembly_tag Finished 12808560 12808560 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12808560 12808565 . + . Note "left end: ZC443" CHROMOSOME_V assembly_tag Clone 12808560 12808565 . + . Note "left end: ZC443" CHROMOSOME_V assembly_tag Finished 12808660 12808660 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12817903 12817906 . + . Note "left end: left end of C44H9" CHROMOSOME_V assembly_tag annotation 12818898 12818900 . + . Note "single read shows A, but thought to be gel artifact" CHROMOSOME_V assembly_tag annotation 12828556 12828563 . + . Note "?end of zc443 finishing. Large overlap with C44H9 split halfway for finishing purposes." CHROMOSOME_V assembly_tag Finished 12828570 12828570 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 12828667 12828667 . + . Note "Right: " CHROMOSOME_V assembly_tag comment 12828667 12828667 . + . CHROMOSOME_V assembly_tag Clone 12838530 12838535 . + . Note "right end: ZC443" CHROMOSOME_V assembly_tag Finished 12857145 12857145 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12857145 12857148 . + . Note "left end: T07F10" CHROMOSOME_V assembly_tag Clone 12857145 12857148 . + . Note "left end: T07F10" CHROMOSOME_V assembly_tag Finished 12857253 12857253 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12859841 12859844 . + . Note "right end: C44H9" CHROMOSOME_V assembly_tag Clone 12874931 12874936 . + . Note "left end: R90" CHROMOSOME_V assembly_tag Finished 12883989 12883989 . + . Note "Left: R90 finished left" CHROMOSOME_V assembly_tag Finished 12884113 12884113 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 12894919 12894922 . + . Note "right end: T07F10 clone left" CHROMOSOME_V assembly_tag annotation 12898547 12898557 . + . Note "there seems to be a variable number of Cs here. Maximum number of 10 minimum of 8." CHROMOSOME_V assembly_tag Finished 12909249 12909252 . + . Note "Left: F54F3" CHROMOSOME_V assembly_tag Clone 12909343 12909348 . + . Note "right end: R90 clone right" CHROMOSOME_V assembly_tag Clone 12909343 12909348 . - . Note "right end: R90 clone right" CHROMOSOME_V assembly_tag Finished 12909348 12909348 . + . Note "Right: R90 finished right" CHROMOSOME_V assembly_tag annotation 12921078 12921078 . + . CHROMOSOME_V assembly_tag Finished 12925322 12925325 . + . Note "Left: T16G1" CHROMOSOME_V assembly_tag Clone 12925322 12925325 . + . Note "left end: T16G1" CHROMOSOME_V assembly_tag Clone 12925322 12925325 . + . Note "left end: T16G1" CHROMOSOME_V assembly_tag Finished 12925418 12925421 . + . Note "Right: F54F3" CHROMOSOME_V assembly_tag Clone 12939695 12939698 . + . Note "right end: F54F3" CHROMOSOME_V assembly_tag Finished 12960431 12960431 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12960431 12960436 . + . Note "left end: R186" CHROMOSOME_V assembly_tag Clone 12960431 12960436 . + . Note "left end: R186 clone left end" CHROMOSOME_V assembly_tag Finished 12960527 12960530 . + . Note "Right: T16G1" CHROMOSOME_V assembly_tag Finished 12989462 12989462 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 12989462 12989465 . + . Note "left end: F15B9 clone left end" CHROMOSOME_V assembly_tag Clone 12989462 12989465 . + . Note "left end: F15B9" CHROMOSOME_V assembly_tag Finished 12989564 12989564 . + . Note "Right: R186 finished right" CHROMOSOME_V assembly_tag Finished 13021607 13021607 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13021607 13021610 . + . Note "left end: left end of W07G4" CHROMOSOME_V assembly_tag Clone 13021607 13021610 . + . Note "left end: W07G4" CHROMOSOME_V assembly_tag Finished 13021710 13021710 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13030792 13030793 . + . Note "This read shows single base difference of an extra t" CHROMOSOME_V assembly_tag Finished 13052507 13052507 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13052507 13052510 . + . Note "left end: Left hand end of F42E8." CHROMOSOME_V assembly_tag Clone 13052507 13052510 . + . Note "left end: Left hand end of F42E8." CHROMOSOME_V assembly_tag Finished 13052607 13052607 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13058645 13058648 . + . Note "right end: Right hand end of W07G4. W07G4 has a GATC site, this is not present in F42E8. F42E8 reads GGTT." CHROMOSOME_V assembly_tag annotation 13066345 13066345 . + . Note "This point only has a PCR product from cosmid DNA covering it. I have called it a T but it does have high A background. I have been unable to resolve it." CHROMOSOME_V assembly_tag Finished 13070733 13070733 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13070733 13070736 . + . Note "left end: C34B4" CHROMOSOME_V assembly_tag Clone 13070733 13070736 . + . Note "left end: Left hand end of C34B4." CHROMOSOME_V assembly_tag Finished 13070833 13070833 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13088852 13088855 . + . Note "right end: F42E8" CHROMOSOME_V assembly_tag Finished 13112674 13112674 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13112674 13112677 . + . Note "left end: Left hand end of VB0365." CHROMOSOME_V assembly_tag Clone 13112771 13112774 . + . Note "right end: Right hand end of C34B4." CHROMOSOME_V assembly_tag Clone 13112771 13112774 . + . Note "right end: C34B4" CHROMOSOME_V assembly_tag Finished 13112774 13112774 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13115571 13115571 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13115571 13115574 . + . Note "left end: Left hand end of B0365." CHROMOSOME_V assembly_tag Clone 13115571 13115574 . + . Note "left end: Left hand end of B0365.\n" CHROMOSOME_V assembly_tag Clone 13115668 13115671 . + . Note "right end: Right hand end of VB0365." CHROMOSOME_V assembly_tag Finished 13115671 13115671 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13151434 13151434 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13151434 13151437 . + . Note "left end: K03H4" CHROMOSOME_V assembly_tag Clone 13151434 13151437 . + . Note "left end: Left hand end of K03H4." CHROMOSOME_V assembly_tag Finished 13151534 13151534 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13151656 13151656 . + . Note "only this clone calls g edited to consensus" CHROMOSOME_V assembly_tag Clone 13165948 13165951 . + . Note "left end: T09E8" CHROMOSOME_V assembly_tag Finished 13171412 13171412 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 13171623 13171623 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13189659 13189659 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13189659 13189662 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 13189659 13189662 . + . Note "left end: Left hand end of F57B1." CHROMOSOME_V assembly_tag Finished 13189762 13189762 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13225447 13225447 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13225447 13225449 . + . Note "left end: C34D1" CHROMOSOME_V assembly_tag Clone 13225447 13225450 . + . Note "left end: C34D1" CHROMOSOME_V assembly_tag Finished 13226190 13226190 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13230716 13230719 . + . Note "right end: Right hand end of F57B1." CHROMOSOME_V assembly_tag annotation 13232494 13232494 . + . Note "single G on both reads one of which is a term. However, the terminator read has a very wide peak. We do not think this suggests 2 real Gs as all the G peaks for this read are wide, so this suggests it is a gel artifact" CHROMOSOME_V assembly_tag Finished 13270369 13270372 . + . Note "Left: F32F2" CHROMOSOME_V assembly_tag Clone 13270465 13270468 . + . Note "right end: right end of C34D1" CHROMOSOME_V assembly_tag Clone 13270465 13270468 . + . Note "right end: C34D1" CHROMOSOME_V assembly_tag Finished 13270468 13270468 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13287711 13287711 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13287711 13287714 . + . Note "left end: Left hand end of C26E1." CHROMOSOME_V assembly_tag Clone 13287711 13287714 . + . Note "left end: C26E1" CHROMOSOME_V assembly_tag Finished 13287807 13287810 . + . Note "Right: F32F2" CHROMOSOME_V assembly_tag annotation 13301693 13301693 . + . Note "There is point mutation on a single clone which has changed from an A to a T." CHROMOSOME_V assembly_tag Finished 13308988 13308988 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13308988 13308991 . + . Note "left end: C50B6" CHROMOSOME_V assembly_tag annotation 13308988 13308991 . + . Note "C50B6\nPossible polymorphism here. C26E1 \nshows GAGA while C50B6 has GATC.\n\nAlternatively the GATC in C50B6 could\nbe a cloning artifact" CHROMOSOME_V assembly_tag Clone 13308988 13308991 . + . Note "left end: Left hand end of C50B6." CHROMOSOME_V assembly_tag Polymorphism 13308990 13308991 . + . Note "Possible polymorphism here. C26E1 shows GAGA the ovelaping cosmid C50B6 has GATC. Alternatively the GATC in C50B6 could be a cloning artifact. " CHROMOSOME_V assembly_tag Finished 13309088 13309088 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13328403 13328411 . + . Note "strange spacing in some reads due to \npotential repeat?" CHROMOSOME_V assembly_tag annotation 13331057 13331058 . + . Note "point mutation of this clone of\nag > gt" CHROMOSOME_V assembly_tag Finished 13350206 13350206 . + . Note "Left: F32H5" CHROMOSOME_V assembly_tag Clone 13350206 13350209 . + . Note "left end: F32H5" CHROMOSOME_V assembly_tag Clone 13350206 13350209 . + . Note "left end: F32H5" CHROMOSOME_V assembly_tag Finished 13350309 13350309 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13352495 13352498 . + . Note "right end: C50B6" CHROMOSOME_V assembly_tag annotation 13367493 13368043 . + . Note "Tandem repeat of 19 bp with consensusTAGATTGTTACACGAAAAARestriction digest data suggests thatthere are approximately 50 copies ofthis tandem repeat. All clones across this region have deleted out a variablenumber of copies of the repeat, so it is not possible to put together an exact consensus for this region. There are no "full length" clonesacross the repeat.Restriction Digest suggests that the assembly is approximately correct " CHROMOSOME_V assembly_tag annotation 13367721 13367725 . + . Note "tandem repeat of 19 bp with consensusTAGATTGTTACACGAAAAARestriction digest data suggests thatthere are approximately 50 copies ofthis tandem repeat. All clones across this region have deleted out a variablenumber of copies of the repeat, so it is not possible to put together an exact consensus for this region. There are no "full length" clonesacross the repeat.Approximately 399bp missing" CHROMOSOME_V assembly_tag Finished 13369616 13369616 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13369616 13369619 . + . Note "left end: M04G12" CHROMOSOME_V assembly_tag Clone 13369616 13369619 . + . Note "left end: Left hand end of M04G12." CHROMOSOME_V assembly_tag Finished 13369712 13369715 . + . Note "Right: F32H5" CHROMOSOME_V assembly_tag Clone 13385436 13385439 . + . Note "right end: Right hand end of F32H5." CHROMOSOME_V assembly_tag Finished 13391113 13391113 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13391113 13391116 . + . Note "left end: F53F1" CHROMOSOME_V assembly_tag Clone 13391113 13391116 . + . Note "left end: F53F1" CHROMOSOME_V assembly_tag Finished 13391213 13391213 . + . Note "Right: M04G12" CHROMOSOME_V assembly_tag Clone 13412868 13412871 . - . Note "right end: Right hand end of M04G12." CHROMOSOME_V assembly_tag Finished 13430491 13430494 . + . Note "Left: Y2H9A" CHROMOSOME_V assembly_tag Clone 13430587 13430590 . + . Note "right end: F53F1" CHROMOSOME_V assembly_tag Clone 13430587 13430590 . + . Note "right end: F53F1" CHROMOSOME_V assembly_tag Finished 13430590 13430590 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13435654 13435703 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSequence from terminator and primer \nreads from a single pUC clone." CHROMOSOME_V assembly_tag annotation 13439948 13439959 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region consisting only of reads from a short insert library derived from a single pUC clone. This sequence formspart of one arm of an inverted repeat." CHROMOSOME_V assembly_tag Finished 13448693 13448693 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13448693 13448696 . + . Note "left end: F25H9" CHROMOSOME_V assembly_tag Clone 13448693 13448696 . + . Note "left end: F25H9" CHROMOSOME_V assembly_tag Finished 13448789 13448792 . + . Note "Right: Y2H9A" CHROMOSOME_V assembly_tag Finished 13470831 13470831 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13470831 13470834 . + . Note "left end: T10G3" CHROMOSOME_V assembly_tag Clone 13470831 13470834 . + . Note "left end: T10G3" CHROMOSOME_V assembly_tag Finished 13470931 13470931 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13489104 13489107 . + . Note "right end: F25H9\n" CHROMOSOME_V assembly_tag Finished 13504912 13504912 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13504912 13504917 . + . Note "left end: pjb8" CHROMOSOME_V assembly_tag Clone 13504912 13504917 . + . Note "left end: R11G10" CHROMOSOME_V assembly_tag Finished 13505012 13505012 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13507120 13507120 . + . Note "right end: rh end of T10G3" CHROMOSOME_V assembly_tag annotation 13517345 13517345 . + . Note "single read has missing G" CHROMOSOME_V assembly_tag Finished 13527918 13527918 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13527918 13527921 . + . Note "left end: Left hand end of C56A3." CHROMOSOME_V assembly_tag Clone 13527918 13527921 . + . Note "left end: C56A3" CHROMOSOME_V assembly_tag Finished 13528020 13528020 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13540853 13540858 . + . Note "right end: Right hand end of R11G10." CHROMOSOME_V assembly_tag Finished 13566561 13566561 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13566561 13566564 . + . Note "left end: C50B8" CHROMOSOME_V assembly_tag Clone 13566561 13566564 . + . Note "left end: Left hand end of C50B8." CHROMOSOME_V assembly_tag Finished 13566661 13566661 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13568238 13568241 . + . Note "right end: possible end of C56A3" CHROMOSOME_V assembly_tag Finished 13585975 13585975 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13585975 13585978 . + . Note "left end: possible left end of F53F4" CHROMOSOME_V assembly_tag Clone 13585975 13585978 . + . Note "left end: F53F4 clone left" CHROMOSOME_V assembly_tag Finished 13586078 13586078 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13607211 13607214 . + . Note "right end: C50B8 right hand clone" CHROMOSOME_V assembly_tag Finished 13630301 13630304 . + . Note "Left: H37A05" CHROMOSOME_V assembly_tag Clone 13630397 13630400 . + . Note "right end: F53F4" CHROMOSOME_V assembly_tag Clone 13630397 13630400 . + . Note "right end: F53F4 clone right" CHROMOSOME_V assembly_tag Finished 13630400 13630400 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13644239 13644359 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13644383 13644445 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13644434 13644465 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[x] Forced join[ ] OtherAdd a comment here -Forced join in tandem repeat region.Each repeat element is 16 bp long, with typical sequence:GAAAAATTTCGTGGCGRestriction digest data (ECORI, HINDIII)indicate around 16 copies of the repeatare missing from this assembly." CHROMOSOME_V assembly_tag annotation 13645949 13646137 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13646250 13646571 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nSingle clone region in tandem repeat." CHROMOSOME_V assembly_tag annotation 13647520 13647531 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here - Another version offosmid was found; two clones had these 12 bp missing from the sequence, while 5 clones had these 12 bp present." CHROMOSOME_V assembly_tag annotation 13647601 13647730 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region consisting only of short insert reads derived from a single pUC clone." CHROMOSOME_V assembly_tag annotation 13649480 13649493 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region consisting only of short insertreads derived from a single pUC clone." CHROMOSOME_V assembly_tag annotation 13653473 13653597 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -Single-stranded region, part of small hairpin. Attempts to sequence with terminator chemistry failed. There are two reads across this region, one ET primer and one Big Dye primer. The sequence has been carefully checked andno evidence of any compressions has been found. " CHROMOSOME_V assembly_tag Finished 13661427 13661427 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13661427 13661430 . + . Note "left end: F58G11" CHROMOSOME_V assembly_tag Clone 13661427 13661430 . + . Note "left end: F58G11" CHROMOSOME_V assembly_tag Finished 13661523 13661526 . + . Note "Right: H37A05" CHROMOSOME_V assembly_tag annotation 13665805 13665805 . + . Note "this clone only calls an extra g\nbetween the 2 a's" CHROMOSOME_V assembly_tag annotation 13673830 13673830 . + . Note "one clone calls a g instead of an a" CHROMOSOME_V assembly_tag annotation 13673881 13673881 . + . Note "point mutation of A to a T in this\nclone" CHROMOSOME_V assembly_tag Finished 13693144 13693144 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13693144 13693147 . + . Note "left end: T01D3" CHROMOSOME_V assembly_tag Clone 13693144 13693147 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 13693247 13693247 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13717453 13717463 . + . Note "single read only in loop of inverted repeat" CHROMOSOME_V assembly_tag annotation 13717464 13717477 . + . Note "region within loop of inverted repeat. Covered by 2 reads, but data is not 100 %, although we feel that this sequence is correct." CHROMOSOME_V assembly_tag Finished 13721458 13721461 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13721458 13721461 . + . Note "left end: F35E12" CHROMOSOME_V assembly_tag Clone 13721458 13721461 . + . Note "left end: F35E12" CHROMOSOME_V assembly_tag Finished 13721558 13721558 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13729198 13729208 . + . CHROMOSOME_V assembly_tag Clone 13730370 13730373 . + . Note "right end: T01D3" CHROMOSOME_V assembly_tag Finished 13752529 13752529 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13752529 13752532 . + . Note "left end: F20G2" CHROMOSOME_V assembly_tag Clone 13752529 13752532 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 13752529 13752532 . + . Note "left end: F20G2" CHROMOSOME_V assembly_tag Finished 13752627 13752627 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13756272 13756272 . + . Note "missing base" CHROMOSOME_V assembly_tag Finished 13776589 13776589 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13776589 13776592 . + . Note "left end: F53C11 left end" CHROMOSOME_V assembly_tag Clone 13776589 13776592 . + . Note "left end: F53C11" CHROMOSOME_V assembly_tag Finished 13776688 13776688 . + . Note "Right: " CHROMOSOME_V assembly_tag Finished 13811283 13811283 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13811283 13811286 . + . Note "left end: left end of F55B12" CHROMOSOME_V assembly_tag Clone 13811283 13811286 . + . Note "left end: Left hand end of F55B12." CHROMOSOME_V assembly_tag Finished 13811384 13811384 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13821542 13821545 . + . Note "right end: Right hand end of F53C11." CHROMOSOME_V assembly_tag Finished 13843433 13843433 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13843433 13843436 . + . Note "left end: Left hand end of F09F3." CHROMOSOME_V assembly_tag Clone 13843433 13843436 . + . Note "left end: F09F3" CHROMOSOME_V assembly_tag Finished 13843533 13843533 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13850124 13850127 . + . Note "right end: F55B12" CHROMOSOME_V assembly_tag annotation 13867907 13867916 . + . Note "single read has 11 Ts " CHROMOSOME_V assembly_tag annotation 13868108 13868108 . + . Note "single read has A deleted at this position. Terms demonstrate this id a deletion not a compression" CHROMOSOME_V assembly_tag annotation 13872691 13872699 . + . Note "single read has 9bp deletion" CHROMOSOME_V assembly_tag Finished 13876758 13876758 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13876758 13876761 . + . Note "left end: T22G5" CHROMOSOME_V assembly_tag Clone 13876758 13876761 . + . Note "left end: T22G5" CHROMOSOME_V assembly_tag Finished 13876861 13876861 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13879138 13879141 . + . Note "right end: " CHROMOSOME_V assembly_tag annotation 13884213 13884652 . + . Note "restriction digest data suggests thatthere is a further 1kb of data missing from between these points.This region incorporates 2 tandem repeats one of 35bp (for which thisassembly has 9 copies) and one of 40bp(for which this assembly has 11 copies).There are numerous floating reads thatdo not completely match, so we are assuming that the repeat itself isunstable, and as such this is the most complete assembly we are ableto produce" CHROMOSOME_V assembly_tag Finished 13898910 13898910 . + . Note "Left: " CHROMOSOME_V assembly_tag annotation 13898910 13898913 . + . Note "True clone left of C06B3 other C06B3 traces to the right are probbly true T22G5 clones." CHROMOSOME_V assembly_tag Clone 13898910 13898913 . + . Note "left end: C06B3" CHROMOSOME_V assembly_tag Clone 13898910 13898913 . + . Note "left end: C06B3" CHROMOSOME_V assembly_tag Finished 13899011 13899011 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13909127 13909130 . + . Note "right end: T22G5" CHROMOSOME_V assembly_tag Finished 13934201 13934201 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 13934201 13934206 . + . Note "left end: R10D12" CHROMOSOME_V assembly_tag Clone 13934201 13934206 . + . Note "left end: R10D12" CHROMOSOME_V assembly_tag Finished 13934306 13934306 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 13943652 13943655 . + . Note "right end: C06B3" CHROMOSOME_V assembly_tag Finished 13970178 13970181 . + . Note "Left: T26F2" CHROMOSOME_V assembly_tag Clone 13970178 13970181 . + . Note "left end: T26F2" CHROMOSOME_V assembly_tag Clone 13970178 13970181 . + . Note "left end: T26F2" CHROMOSOME_V assembly_tag Finished 13970280 13970280 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 13973619 13973957 . + . Note "Loop of large inverted repeat \norientation of loop is unknown " CHROMOSOME_V assembly_tag Clone 13977285 13977290 . + . Note "right end: R10D12" CHROMOSOME_V assembly_tag Clone 13977285 13977290 . - . Note "right end: " CHROMOSOME_V assembly_tag annotation 13978405 13978464 . - . Note "Single clone across repetitive region edited according to repeat.Seemsto be no base pair difference in this\nregion between the 2 arms of this \ninverted repeat.\nRestriction digest agrees with data" CHROMOSOME_V assembly_tag annotation 13984876 13984982 . + . Note "Region covered by single clonewith 2 different chemistriesThis region is immediately to the leftof a small inverted repeat making confirmation of this sequence difficultRestriction digest of EcoRI gives apredicted band size of 5015 vs 4987from data." CHROMOSOME_V assembly_tag Clone 13986110 13986113 . + . Note "left end: F58E10" CHROMOSOME_V assembly_tag Finished 13986110 13986113 . + . Note "Left: F58E10" CHROMOSOME_V assembly_tag Clone 13986110 13986113 . + . Note "left end: F58E10" CHROMOSOME_V assembly_tag Clone 13986110 13986213 . - . Note "left end: " CHROMOSOME_V assembly_tag Finished 13986210 13986213 . - . Note "Right: T26F2" CHROMOSOME_V assembly_tag Finished 14018249 14018252 . + . Note "Left: T08G5" CHROMOSOME_V assembly_tag Clone 14018249 14018252 . + . Note "left end: T08G5" CHROMOSOME_V assembly_tag Clone 14018249 14018252 . + . Note "left end: T08G5" CHROMOSOME_V assembly_tag Finished 14018349 14018352 . + . Note "Right: F58E10" CHROMOSOME_V assembly_tag Clone 14026652 14026655 . + . Note "right end: F58E10" CHROMOSOME_V assembly_tag Finished 14050526 14050526 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14050526 14050529 . - . Note "left end: F58D12" CHROMOSOME_V assembly_tag Clone 14050526 14050529 . - . Note "left end: F58D12" CHROMOSOME_V assembly_tag Finished 14050622 14050625 . + . Note "Right: T08G5" CHROMOSOME_V assembly_tag annotation 14054948 14054948 . + . Note "8 clones from T08G5 call Cgg rest\ncall ggg possible repeat in T08G5\nor point mutation." CHROMOSOME_V assembly_tag annotation 14055001 14055002 . - . Note "8 clones form T08G5 call Gg rest of \nclones call ag possible repeat in \nT08G5 or point mutation\n" CHROMOSOME_V assembly_tag Clone 14057554 14057557 . + . Note "right end: T08G5" CHROMOSOME_V assembly_tag Finished 14065041 14065044 . + . Note "Left: D1086" CHROMOSOME_V assembly_tag Clone 14065041 14065044 . + . Note "left end: D1086" CHROMOSOME_V assembly_tag Clone 14065041 14065044 . - . Note "left end: D1086" CHROMOSOME_V assembly_tag Finished 14065144 14065144 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14091524 14091527 . + . Note "right end: F58D12" CHROMOSOME_V assembly_tag Finished 14106207 14106210 . + . Note "Left: H39E23" CHROMOSOME_V assembly_tag Finished 14106307 14106310 . + . Note "Right: D1086" CHROMOSOME_V assembly_tag Clone 14106307 14106310 . + . Note "right end: D1086" CHROMOSOME_V assembly_tag Clone 14106307 14106310 . - . Note "right end: D1086\n" CHROMOSOME_V assembly_tag annotation 14109087 14109091 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nregion confirmed by restriction digest" CHROMOSOME_V assembly_tag Finished 14127917 14127920 . + . Note "Left: AH10" CHROMOSOME_V assembly_tag Clone 14127917 14127920 . + . Note "left end: AH10" CHROMOSOME_V assembly_tag Clone 14127917 14127920 . + . Note "left end: AH10" CHROMOSOME_V assembly_tag Clone 14127917 14127920 . + . Note "left end: Start of AH10" CHROMOSOME_V assembly_tag Finished 14128017 14128020 . + . Note "Right: H39E23" CHROMOSOME_V assembly_tag Clone 14142328 14142331 . + . Note "left end: T02B5" CHROMOSOME_V assembly_tag Clone 14144541 14144544 . + . Note "right end: End of T02B5" CHROMOSOME_V assembly_tag Finished 14158852 14158855 . + . Note "Left: T02B5" CHROMOSOME_V assembly_tag Clone 14158952 14158955 . + . Note "right end: AH10" CHROMOSOME_V assembly_tag Finished 14158952 14158955 . + . Note "Right: AH10" CHROMOSOME_V assembly_tag Finished 14158952 14158955 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14158952 14158955 . + . Note "right end: End of AH10" CHROMOSOME_V assembly_tag Clone 14158952 14158955 . + . Note "right end: AH10" CHROMOSOME_V assembly_tag Finished 14170443 14170448 . + . Note "Left: ZC376" CHROMOSOME_V assembly_tag Clone 14170443 14170448 . + . Note "left end: ZC376" CHROMOSOME_V assembly_tag Clone 14170443 14170448 . + . Note "left end: ZC376" CHROMOSOME_V assembly_tag Finished 14170545 14170548 . + . Note "Right: T02B5" CHROMOSOME_V assembly_tag Clone 14199101 14199104 . + . Note "left end: T16A9" CHROMOSOME_V assembly_tag Clone 14199101 14199104 . + . Note "left end: T16A9" CHROMOSOME_V assembly_tag Finished 14199101 14199104 . + . Note "Left: T16A9" CHROMOSOME_V assembly_tag Finished 14199201 14199204 . + . Note "Right: ZC376" CHROMOSOME_V assembly_tag Inverted 14204423 14204602 . + . Note "Repeat: " CHROMOSOME_V assembly_tag Inverted 14204619 14204805 . + . Note "Repeat: " CHROMOSOME_V assembly_tag annotation 14204661 14204661 . + . Note "One M13 clone had an A in this position All others had a T (5 more clones)" CHROMOSOME_V assembly_tag Clone 14208323 14208328 . + . Note "right end: ZC376" CHROMOSOME_V assembly_tag Clone 14224079 14224082 . + . Note "left end: K02E11" CHROMOSOME_V assembly_tag Finished 14224079 14224082 . + . Note "Left: K02E11" CHROMOSOME_V assembly_tag Clone 14224079 14224082 . + . Note "left end: K02E11" CHROMOSOME_V assembly_tag Finished 14224179 14224182 . + . Note "Right: T16A9" CHROMOSOME_V assembly_tag Clone 14233778 14233781 . + . Note "right end: T16A9" CHROMOSOME_V assembly_tag annotation 14251854 14251865 . + . Note "A single M13 clone had 13 Ts in this position rather than 12 (in 7 other clones)" CHROMOSOME_V assembly_tag Clone 14256935 14256938 . + . Note "left end: F40G12" CHROMOSOME_V assembly_tag Finished 14256935 14256938 . + . Note "Left: F40G12" CHROMOSOME_V assembly_tag Clone 14256935 14256938 . + . Note "left end: F40G12" CHROMOSOME_V assembly_tag Finished 14257035 14257038 . + . Note "Right: K02E11" CHROMOSOME_V assembly_tag Clone 14264719 14264722 . + . Note "right end: K02E11" CHROMOSOME_V assembly_tag Clone 14288941 14288944 . + . Note "left end: F14D7" CHROMOSOME_V assembly_tag Finished 14288941 14288944 . + . Note "Left: F14D7" CHROMOSOME_V assembly_tag Clone 14288941 14288944 . + . Note "left end: Start of F14D7" CHROMOSOME_V assembly_tag Finished 14289041 14289044 . + . Note "Right: F40G12" CHROMOSOME_V assembly_tag Clone 14297785 14297788 . + . Note "right end: Probably the end of F40G12" CHROMOSOME_V assembly_tag Clone 14314913 14314916 . + . Note "left end: Start of F47B8" CHROMOSOME_V assembly_tag Finished 14314913 14314916 . + . Note "Left: F47B8" CHROMOSOME_V assembly_tag Clone 14314913 14314916 . + . Note "left end: Start of F47B8" CHROMOSOME_V assembly_tag Clone 14314913 14314916 . + . Note "left end: F47B8" CHROMOSOME_V assembly_tag Finished 14315013 14315016 . + . Note "Right: F14D7" CHROMOSOME_V assembly_tag Clone 14329067 14329070 . + . Note "right end: End of F14D7" CHROMOSOME_V assembly_tag Clone 14329067 14329070 . + . Note "right end: F14D7" CHROMOSOME_V assembly_tag annotation 14340604 14340614 . + . Note "Four well-resolved M13 reads over this\nregion of which 2 have 10 As and 2 have\n11 As." CHROMOSOME_V assembly_tag annotation 14340604 14340614 . + . Note "Four well-resolved M13 reads over this region of which 2 have 10 As and 2 have 11 As." CHROMOSOME_V assembly_tag Finished 14349708 14349711 . + . Note "Left: Y49A3A" CHROMOSOME_V assembly_tag annotation 14349763 14350209 . + . Note "First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -tandem repeat with typical repeat element GATCAGAACATCAGAAGGTACCCATGT (270-mer). Size not determined." CHROMOSOME_V assembly_tag Clone 14349808 14349811 . + . Note "right end: F47B8" CHROMOSOME_V assembly_tag Finished 14349808 14349811 . + . Note "Right: F47B8" CHROMOSOME_V assembly_tag Finished 14349870 14349873 . + . Note "Right: F47B8" CHROMOSOME_V assembly_tag Clone 14349870 14349873 . + . Note "right end: End of F47B8" CHROMOSOME_V assembly_tag annotation 14350031 14350038 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[ ] Single clone region\n[x] Forced join\n[ ] Other\nAdd a comment here -\nin tandem repeat region" CHROMOSOME_V assembly_tag Finished 14360168 14360171 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14360168 14360171 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14360168 14360171 . + . Note "left end: F56A12" CHROMOSOME_V assembly_tag Finished 14360268 14360271 . + . Note "Right: Y49A3A" CHROMOSOME_V assembly_tag annotation 14362113 14362159 . + . Note "restriction digest confirms this single stranded region is OK" CHROMOSOME_V assembly_tag Finished 14386092 14386095 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14386092 14386095 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14386092 14386095 . + . Note "left end: left end of C15H11" CHROMOSOME_V assembly_tag Finished 14386192 14386195 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 14397580 14397583 . - . Note "right end: F56A12" CHROMOSOME_V assembly_tag annotation 14397877 14397952 . - . Note "cosmid PCR sequence, base called by eye\n" CHROMOSOME_V assembly_tag Finished 14427217 14427220 . + . Note "Left: VF23B12L" CHROMOSOME_V assembly_tag Clone 14427317 14427320 . + . Note "right end: C15H11" CHROMOSOME_V assembly_tag Clone 14427317 14427320 . - . Note "right end: C15H11" CHROMOSOME_V assembly_tag Finished 14427317 14427320 . - . Note "Right: " CHROMOSOME_V assembly_tag Finished 14430009 14430012 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14430009 14430012 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14430009 14430012 . + . Note "left end: F23B12" CHROMOSOME_V assembly_tag Finished 14430109 14430112 . + . Note "Right: VF23B12L" CHROMOSOME_V assembly_tag Finished 14457702 14457705 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14457702 14457705 . + . Note "left end: overlap f08h9" CHROMOSOME_V assembly_tag Clone 14457702 14457705 . + . Note "left end: overlap f08h9" CHROMOSOME_V assembly_tag Finished 14457802 14457805 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14468126 14468129 . + . Note "right end: righthand end f23b12" CHROMOSOME_V assembly_tag Clone 14468126 14468129 . + . Note "right end: left overlap" CHROMOSOME_V assembly_tag annotation 14468522 14468538 . + . Note "number of G's may not be accurate" CHROMOSOME_V assembly_tag Finished 14481334 14481339 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14481334 14481339 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14481334 14481339 . + . Note "left end: overlap right end" CHROMOSOME_V assembly_tag Clone 14481334 14481339 . + . Note "left end: R02D5" CHROMOSOME_V assembly_tag Finished 14481436 14481439 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14497366 14497369 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 14497366 14497369 . + . Note "right end: F08H9" CHROMOSOME_V assembly_tag Clone 14522306 14522309 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14522306 14522309 . + . Note "left end: C53A5" CHROMOSOME_V assembly_tag Finished 14522306 14522309 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14522406 14522409 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14525257 14525262 . + . Note "right end: R02D5" CHROMOSOME_V assembly_tag Finished 14568682 14568685 . + . Note "Left: Y40H4A" CHROMOSOME_V assembly_tag Clone 14568782 14568785 . + . Note "right end: C53A5" CHROMOSOME_V assembly_tag Clone 14568782 14568785 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 14568782 14568785 . - . Note "Right: " CHROMOSOME_V assembly_tag annotation 14587580 14590157 . + . Note "tandem repeat, size undetermined.\nTypical repeat element is CCCTTACTTTTGAATTTTTGAAAATAGCAGCTTTTGGTTAAATTCTGAATTTTTAAAAATTAACTT (65-mer)" CHROMOSOME_V assembly_tag annotation 14590058 14594953 . + . Note "tandem repeat, size undetermined.\nTypical repeat element is CCCATACTTTTGAATTTTTGAAAATAATAGCTTCTGGTTAATTTCTGAATTTTTAAAAATTAACTT (65-mer)" CHROMOSOME_V assembly_tag Finished 14594848 14594853 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14594848 14594853 . + . Note "left end: left end of R11H6" CHROMOSOME_V assembly_tag Clone 14594848 14594853 . + . Note "left end: R11H6" CHROMOSOME_V assembly_tag Finished 14594950 14594953 . + . Note "Right: Y40H4A" CHROMOSOME_V assembly_tag annotation 14602238 14602243 . + . Note "Think This is CAAATAAAATGCAC\n\nfrom Rachy Raych" CHROMOSOME_V assembly_tag Finished 14614128 14614131 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14614128 14614131 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14614128 14614131 . + . Note "left end: left end of F43D2" CHROMOSOME_V assembly_tag Finished 14614227 14614230 . - . Note "Right: " CHROMOSOME_V assembly_tag Clone 14628152 14628157 . - . Note "right end: right end of R11H6" CHROMOSOME_V assembly_tag Finished 14641801 14641804 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14641801 14641804 . + . Note "left end: C54G10" CHROMOSOME_V assembly_tag Clone 14641801 14641804 . + . Note "left end: C54G10" CHROMOSOME_V assembly_tag Finished 14641901 14641904 . - . Note "Right: " CHROMOSOME_V assembly_tag Finished 14662904 14662907 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14662904 14662907 . + . Note "left end: C47E8" CHROMOSOME_V assembly_tag Clone 14662904 14662907 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14662904 14662907 . + . Note "left end: C47E8" CHROMOSOME_V assembly_tag Finished 14663004 14663007 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14679780 14679783 . + . Note "right end: C54G10" CHROMOSOME_V assembly_tag Clone 14679780 14679783 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 14707174 14707177 . + . Note "Left: R08A2" CHROMOSOME_V assembly_tag Clone 14707271 14707274 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 14707271 14707274 . + . Note "right end: C47E8" CHROMOSOME_V assembly_tag Clone 14707271 14707274 . + . Note "right end: C47E8" CHROMOSOME_V assembly_tag Finished 14707271 14707274 . - . Note "Right: " CHROMOSOME_V assembly_tag repeat 14711025 14711608 . + . CHROMOSOME_V assembly_tag repeat 14712051 14712635 . - . CHROMOSOME_V assembly_tag cosmid 14714618 14714626 . + . Note "vector: " CHROMOSOME_V assembly_tag cosmid 14719296 14719308 . + . Note "vector: " CHROMOSOME_V assembly_tag Finished 14726566 14726571 . + . Note "Left: Y50E8A" CHROMOSOME_V assembly_tag Clone 14726666 14726671 . + . Note "right end: R08A2" CHROMOSOME_V assembly_tag Clone 14726666 14726671 . + . Note "right end: R08A2" CHROMOSOME_V assembly_tag cosmid 14726666 14726671 . + . Note "vector: CAF:End=Right::pjb8" CHROMOSOME_V assembly_tag Finished 14726668 14726671 . + . Note "Right: R08A2" CHROMOSOME_V assembly_tag cosmid 14726665 14726671 . - . Note "vector: " CHROMOSOME_V assembly_tag annotation 14726840 14726869 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Single direction primer reads only." CHROMOSOME_V assembly_tag oligo 14730801 14730818 . - . Note "serial#=Y50E8.3 template=pa31g5 sequence=TTTATTTCGTTGCGTCTC flags= " CHROMOSOME_V assembly_tag oligo 14732184 14732200 . - . Note "serial#=Y50E8.4 template=pa30h12 sequence=GCGAGGTGGTTTACTTG flags= " CHROMOSOME_V assembly_tag annotation 14743178 14746735 . + . Note "First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [X] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Contains single clone regions." CHROMOSOME_V assembly_tag oligo 14747121 14747138 . - . Note "serial#=Y50E8.2 template=Y50E8a1 sequence=TACCAGTTTTATGACCAG flags= " CHROMOSOME_V assembly_tag oligo 14754984 14755001 . - . Note "serial#=Y50E8.5 template=pa28d3 sequence=GAAGTTTGAGAAGACGAC flags= " CHROMOSOME_V assembly_tag oligo 14756451 14756469 . + . Note "serial#=Y50E8.8 template= sequence= CTCTCTGTGGCTTCCCAAA flags=" CHROMOSOME_V assembly_tag annotation 14756474 14759098 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Contains single clone regions" CHROMOSOME_V assembly_tag oligo 14757172 14757189 . - . Note "serial#=Y50E8.9 template= sequence=GTAAAATATGGTGGGAAG flags= " CHROMOSOME_V assembly_tag oligo 14759379 14759396 . - . Note "serial#=Y50E8.1 template=Pa28f4 sequence=GCTTTGTCCGTATTTCTC flags= " CHROMOSOME_V assembly_tag annotation 14763927 14763994 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_V assembly_tag annotation 14764017 14764086 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_V assembly_tag oligo 14764193 14764209 . - . Note "serial#=Y50E8.6 template=qb86d6 sequence=GAGGTAAGGGGATTTTC flags= " CHROMOSOME_V assembly_tag oligo 14767964 14767981 . + . Note "serial#=Y50E8.7 template=pa46h11 sequence=AACCACTGTTGTTTTCTC flags= " CHROMOSOME_V assembly_tag annotation 14769834 14771321 . + . Note "First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - " CHROMOSOME_V assembly_tag Clone 14788326 14788328 . + . Note "left end: C48G7" CHROMOSOME_V assembly_tag Finished 14788326 14788329 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14788326 14788329 . + . Note "left end: C48G7" CHROMOSOME_V assembly_tag Finished 14788426 14788429 . + . Note "Right: Y50E8A" CHROMOSOME_V assembly_tag Clone 14818831 14818838 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 14818831 14818838 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 14818831 14818838 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14818831 14818838 . + . Note "left end: W06A7" CHROMOSOME_V assembly_tag Clone 14818831 14818838 . + . Note "left end: W06A7" CHROMOSOME_V assembly_tag Finished 14818930 14818933 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14829744 14829747 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 14829744 14829747 . + . Note "right end: C48G7" CHROMOSOME_V assembly_tag Clone 14845968 14845973 . + . Note "left end: ZC412" CHROMOSOME_V assembly_tag Clone 14845968 14845973 . + . Note "left end: ZC412" CHROMOSOME_V assembly_tag Finished 14845968 14845973 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14846070 14846073 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 14848735 14848744 . + . Note "some reads have 10 Ts some 11, is not cosmid specific so edit to 11" CHROMOSOME_V assembly_tag Clone 14855937 14855942 . + . Note "right end: right end of W06A7" CHROMOSOME_V assembly_tag annotation 14881462 14881465 . + . Note "putative site of end of overlap between ZC412 and W02B4" CHROMOSOME_V assembly_tag annotation 14882020 14882022 . + . CHROMOSOME_V assembly_tag Finished 14883459 14883462 . + . Note "Left: H12D21" CHROMOSOME_V assembly_tag Finished 14883557 14883562 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 14883557 14883562 . + . Note "right end: ZC412" CHROMOSOME_V assembly_tag Clone 14883557 14883562 . + . Note "right end: right end of ZC412 overlapping W02B4" CHROMOSOME_V assembly_tag annotation 14898207 14898266 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[x] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nsize confirmed by restriction digest" CHROMOSOME_V assembly_tag Clone 14918368 14918371 . + . Note "left end: W09D12" CHROMOSOME_V assembly_tag Clone 14918368 14918375 . + . Note "left end: W09D12" CHROMOSOME_V assembly_tag Finished 14918368 14918375 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14918472 14918475 . + . Note "Right: H12D21" CHROMOSOME_V assembly_tag Clone 14937177 14937180 . + . Note "left end: C30G7" CHROMOSOME_V assembly_tag Clone 14937177 14937180 . + . Note "left end: C30G7" CHROMOSOME_V assembly_tag Clone 14937177 14937180 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 14937177 14937180 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14937277 14937280 . + . Note "Right: " CHROMOSOME_V assembly_tag annotation 14954385 14954405 . - . Note "probably 21 Cs/Gs" CHROMOSOME_V assembly_tag Clone 14956672 14956675 . + . Note "left end: F02D8" CHROMOSOME_V assembly_tag Clone 14956672 14956675 . + . Note "left end: F02D8" CHROMOSOME_V assembly_tag Finished 14956672 14956675 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14956773 14956776 . - . Note "Right: " CHROMOSOME_V assembly_tag polymorphism 14973236 14973251 . + . Note "16 G's in F02D8; 15 G's in C30G7" CHROMOSOME_V assembly_tag annotation 14973236 14973251 . + . CHROMOSOME_V assembly_tag Clone 14977004 14977007 . + . Note "right end: right end of C30G7" CHROMOSOME_V assembly_tag Clone 14988192 14988195 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14988192 14988195 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 14988192 14988195 . + . Note "left end: T01C3" CHROMOSOME_V assembly_tag Finished 14988192 14988195 . + . Note "Left: " CHROMOSOME_V assembly_tag Finished 14988292 14988295 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15000210 15000213 . + . Note "right end: F02D8" CHROMOSOME_V assembly_tag Clone 15000210 15000213 . + . Note "right end: " CHROMOSOME_V assembly_tag Clone 15011298 15011301 . + . Note "left end: " CHROMOSOME_V assembly_tag Finished 15011298 15011301 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15011298 15011301 . + . Note "left end: " CHROMOSOME_V assembly_tag Clone 15011298 15011301 . + . Note "left end: F14H8" CHROMOSOME_V assembly_tag Finished 15011398 15011401 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15021696 15021699 . - . Note "right end: " CHROMOSOME_V assembly_tag Clone 15034126 15034129 . - . Note "left end: C25D7??" CHROMOSOME_V assembly_tag Finished 15034126 15034129 . - . Note "Left: " CHROMOSOME_V assembly_tag Clone 15034126 15034129 . - . Note "left end: " CHROMOSOME_V assembly_tag Clone 15034126 15034129 . - . Note "left end: C25D7??" CHROMOSOME_V assembly_tag Finished 15034226 15034229 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15053768 15053771 . - . Note "right end: " CHROMOSOME_V assembly_tag Finished 15069575 15069578 . + . Note "Left: " CHROMOSOME_V assembly_tag Clone 15069575 15069578 . + . Note "left end: C01G10" CHROMOSOME_V assembly_tag Clone 15076483 15076486 . + . Note "right end: " CHROMOSOME_V assembly_tag Finished 15076483 15076486 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15076483 15076486 . + . Note "right end: C25D7" CHROMOSOME_V assembly_tag Finished 15108141 15108144 . + . Note "Left: Y75B12A" CHROMOSOME_V assembly_tag Clone 15108242 15108245 . + . Note "right end: C01G10" CHROMOSOME_V assembly_tag Finished 15108242 15108245 . + . Note "Right: " CHROMOSOME_V assembly_tag Clone 15108242 15108245 . - . Note "right end: C01G10" CHROMOSOME_V assembly_tag repeat 15108141 15108259 . - . Note "Repeats with contig us80h11.p2c1, offset 200\n" CHROMOSOME_V assembly_tag oligo 15108288 15108306 . + . Note "serial#=Y75B12-01\ntemplate=us80h10\nsequence=GTAGAGTGTCACAAATAAC\nflags=\n" CHROMOSOME_V assembly_tag comment 15108307 15108313 . + . Note "?Oligo in repeat thats why didn't work" CHROMOSOME_V assembly_tag repeat 15108261 15108420 . - . Note "Repeats with contig us80h11.p2c1, offset 38\n" CHROMOSOME_V assembly_tag repeat 15108490 15108518 . - . Note "Repeats with contig C01G10.00001, offset 39025\n" CHROMOSOME_V assembly_tag oligo 15108535 15108556 . + . Note "serial#=Y75B12-05\ntemplate=us80h10\nsequence=GATTGGAGCTTCATTATTTTTG\nflags=\n" CHROMOSOME_V assembly_tag repeat 15108589 15108617 . - . Note "Repeats with contig C01G10.00001, offset 38926\n" CHROMOSOME_V assembly_tag comment 15108681 15108686 . + . Note "?END of repeat can make oligo ->" CHROMOSOME_V assembly_tag repeat 15108650 15108686 . - . Note "Repeats with contig uu30e5.p1, offset 72258\n" CHROMOSOME_V assembly_tag repeat 15108650 15108846 . - . Note "Repeats with contig uv73h12.p1, offset 8573\n" CHROMOSOME_V assembly_tag repeat 15108687 15108846 . - . Note "Repeats with contig C01G10.00001, offset 38697\n" CHROMOSOME_V assembly_tag cosmid 15108837 15108896 . - . Note "vector: " CHROMOSOME_V assembly_tag repeat 15108849 15108988 . - . Note "Repeats with contig uv73h12.p1, offset 8431\n" CHROMOSOME_V assembly_tag repeat 15108849 15108988 . - . Note "Repeats with contig C01G10.00001, offset 38556\n" CHROMOSOME_V assembly_tag repeat 15108990 15109090 . - . Note "Repeats with contig C01G10.00001, offset 38454\n" CHROMOSOME_V assembly_tag repeat 15108990 15109090 . - . Note "Repeats with contig uv73h12.p1, offset 8329\n" CHROMOSOME_V assembly_tag comment