##gff-version 2 ##date 2001-04-10 ##sequence-region CHROMOSOME_X 1 17748731 CHROMOSOME_X assembly_tag Finished 1 4 . + . Note "Left: cTel7X" CHROMOSOME_X assembly_tag Finished 2644 2649 . - . Note "Right: cTel7X" CHROMOSOME_X assembly_tag Finished 63550 63553 . + . Note "Left: AC8" CHROMOSOME_X assembly_tag Clone 63550 63553 . + . Note "left end: AC8" CHROMOSOME_X assembly_tag annotation 68079 68089 . + . Note "single read from a single sonicated \nclone in an inverted repeat region" CHROMOSOME_X assembly_tag annotation 70256 70348 . + . Note "single pUC18 clone in inverted repeat region" CHROMOSOME_X assembly_tag annotation 73985 73998 . + . Note "one clone has 13 T's, the rest have 14 \nT's. Edited to 14 T's." CHROMOSOME_X assembly_tag Finished 93310 93313 . + . Note "Right: AC8" CHROMOSOME_X assembly_tag Clone 93310 93313 . + . Note "right end: AC8" CHROMOSOME_X assembly_tag Clone 122494 122497 . + . Note "left end: T08D2" CHROMOSOME_X assembly_tag Finished 122494 122497 . + . Note "Left: T08D2" CHROMOSOME_X assembly_tag annotation 127742 128836 . + . Note "tandem repeat, bases 5249 - 6342.\nTypical repeat motif is TTTTGGGCGCTGCTAAACTATAAACGACAAG (a 30-mer). Exact size\ncannot be determined as the repeat\nlength is unstable (from restriction \ndigest data)." CHROMOSOME_X assembly_tag annotation 151719 153489 . + . Note "tandem repeat, bases 29226 - 30995.\nTypical repeat element is CTACAAACTACAAGTTTTGGGCGCTGCTAAGACTACAAA (a 38-mer).\nExact size cannot be confirmed as the\nrepeat size is unstable (from\nrestriction digest data)." CHROMOSOME_X assembly_tag Finished 162467 162470 . + . Note "Right: T08D2" CHROMOSOME_X assembly_tag Clone 162467 162470 . + . Note "right end: T08D2" CHROMOSOME_X assembly_tag annotation 9452323 9452326 . + . Note "end B0272" CHROMOSOME_X assembly_tag comment 9472439 9472452 . + . Note "?repeat left end" CHROMOSOME_X assembly_tag comment 9474008 9474019 . + . Note "repeat right end" CHROMOSOME_X assembly_tag annotation 9475482 9475485 . + . Note "left end of ZK899" CHROMOSOME_X assembly_tag annotation 9480989 9480992 . + . Note "end B0272" CHROMOSOME_X assembly_tag annotation 9512091 9512109 . + . Note "Seems to be 19 C's, but could be 20 " CHROMOSOME_X assembly_tag cosmid 9513024 9513046 . + . Note "vector: ZK899 up to here " CHROMOSOME_X assembly_tag annotation 9515969 9515978 . + . Note "Some reads clearly say 10 A's, some clearly say 9 A's. Edited as 10 A's. " CHROMOSOME_X assembly_tag annotation 9524743 9524746 . + . Note "from here to the next black tag at 15760 seems to be a dodgey region. " CHROMOSOME_X assembly_tag annotation 9524868 9524868 . + . Note "Some say T and some say G" CHROMOSOME_X assembly_tag annotation 9525031 9525032 . + . Note "edited as G, but one read calls A clearly, while others are unsure. End of dodgey region " CHROMOSOME_X assembly_tag annotation 9540991 9540994 . + . Note "left end of C07B5?????" CHROMOSOME_X assembly_tag cosmid 9541131 9541160 . + . Note "vector: C07B5 starts here " CHROMOSOME_X assembly_tag annotation 9548511 9548514 . + . Note "end of T19C11" CHROMOSOME_X assembly_tag annotation 9558530 9558538 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 9559092 9559102 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 9563972 9564002 . + . Note "single stranded with terminators" CHROMOSOME_X assembly_tag annotation 9580462 9580465 . + . Note "left F49E2 lorist6.rev" CHROMOSOME_X assembly_tag annotation 9581252 9581256 . + . Note "pJB8 right C07B5" CHROMOSOME_X assembly_tag annotation 9585459 9585459 . + . Note "G missing" CHROMOSOME_X assembly_tag annotation 9618127 9618130 . + . Note "left C11E4 pJB8rev" CHROMOSOME_X assembly_tag Clone 9618127 9618131 . + . Note "left end: Start of C11E4" CHROMOSOME_X assembly_tag Finished 9618127 9618131 . + . Note "Left: C11E4\n" CHROMOSOME_X assembly_tag Clone 9622277 9622284 . + . Note "right end: F49E2 ends here\n" CHROMOSOME_X assembly_tag annotation 9658826 9658829 . + . Note "left hand end F34H10" CHROMOSOME_X assembly_tag Clone 9658826 9658829 . + . Note "left end: F34H10 onwards\n" CHROMOSOME_X assembly_tag Finished 9658926 9658929 . - . Note "Right: " CHROMOSOME_X assembly_tag Possible_frameshift 9660370 9661130 . + . Note "ribosomal gene is frameshifted, c" CHROMOSOME_X assembly_tag annotation 9660961 9660964 . + . Note "right hand end C11E4" CHROMOSOME_X assembly_tag annotation 9686443 9686446 . + . Note "Left hand end T14B1" CHROMOSOME_X assembly_tag annotation 9686443 9686446 . + . Note "Left end of T14B1" CHROMOSOME_X assembly_tag annotation 9697043 9697046 . + . Note "end of F34H10" CHROMOSOME_X assembly_tag annotation 9708158 9708161 . + . Note "left end of C43C3????" CHROMOSOME_X assembly_tag annotation 9708158 9708161 . + . Note "left C43C3" CHROMOSOME_X assembly_tag annotation 9721073 9721076 . + . Note "right T14B1" CHROMOSOME_X assembly_tag annotation 9738389 9738392 . + . Note "left F15G9" CHROMOSOME_X assembly_tag annotation 9738389 9738392 . + . Note "left F15G9" CHROMOSOME_X assembly_tag annotation 9747220 9747223 . + . Note "right C43C3" CHROMOSOME_X assembly_tag annotation 9762772 9762772 . + . Note "G > A mutation" CHROMOSOME_X assembly_tag annotation 9779633 9779636 . + . Note "left end of T09B9" CHROMOSOME_X assembly_tag annotation 9779633 9779636 . + . Note "left T09B9" CHROMOSOME_X assembly_tag annotation 9782416 9782425 . + . Note "could be 9 A's" CHROMOSOME_X assembly_tag annotation 9783711 9783714 . + . Note "end of F15G9" CHROMOSOME_X assembly_tag annotation 9814875 9814879 . + . CHROMOSOME_X assembly_tag annotation 9814875 9814883 . + . CHROMOSOME_X assembly_tag annotation 9814879 9814883 . + . CHROMOSOME_X assembly_tag annotation 9826774 9826780 . + . CHROMOSOME_X assembly_tag Clone 9837462 9837465 . + . Note "left end: " CHROMOSOME_X assembly_tag annotation 9837462 9837465 . + . Note "Start of F47A4" CHROMOSOME_X assembly_tag annotation 9837467 9837473 . + . Note "END of F47A4 seq {Bev}" CHROMOSOME_X assembly_tag Clone 9849504 9849508 . + . Note "right end: End of F36G3" CHROMOSOME_X assembly_tag annotation 9849504 9849508 . + . CHROMOSOME_X assembly_tag Clone 9875032 9875037 . + . Note "left end: Start of R07B1" CHROMOSOME_X assembly_tag annotation 9875032 9875037 . + . Note "left end of R07B1" CHROMOSOME_X assembly_tag annotation 9878866 9878869 . + . Note "? right end of F47A4" CHROMOSOME_X assembly_tag annotation 9914659 9914687 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 9919141 9919144 . + . Note "left end of F21G4" CHROMOSOME_X assembly_tag Finished 9919141 9919144 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 9919141 9919144 . + . Note "left end: Start of F21G4" CHROMOSOME_X assembly_tag Clone 9921451 9921456 . + . Note "right end: End of R07B1\n" CHROMOSOME_X assembly_tag Clone 9953017 9953020 . + . Note "left end: Start of C17G1" CHROMOSOME_X assembly_tag Finished 9953017 9953020 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 9953017 9953020 . + . Note "left end: C17G1" CHROMOSOME_X assembly_tag Finished 9953114 9953117 . - . Note "Right: " CHROMOSOME_X assembly_tag annotation 9955035 9955073 . + . Note "Single stranding. Gap closed by using phagemids, one being a terminator." CHROMOSOME_X assembly_tag Clone 9962012 9962016 . + . Note "right end: F21G4 " CHROMOSOME_X assembly_tag annotation 9979570 9979573 . + . Note "Point mutation wc22f11.s1 and .t1 read AAAAAA all other reads AAGAA" CHROMOSOME_X assembly_tag annotation 9990901 9990905 . + . Note "start ZC506" CHROMOSOME_X assembly_tag Clone 9990901 9990906 . + . Note "left end: ZC506" CHROMOSOME_X assembly_tag Finished 9991006 9991008 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 9993540 9993545 . + . Note "end of overlap with C17G1" CHROMOSOME_X assembly_tag Clone 10014149 10014152 . + . Note "left end: F19C6" CHROMOSOME_X assembly_tag annotation 10014149 10014152 . + . Note "Left hand end F19C6" CHROMOSOME_X assembly_tag Clone 10024009 10024012 . + . Note "left end: F42G10" CHROMOSOME_X assembly_tag Clone 10050638 10050641 . + . Note "right end: F19C6" CHROMOSOME_X assembly_tag Finished 10062985 10062988 . + . Note "Left: VZC374L" CHROMOSOME_X assembly_tag Clone 10063083 10063086 . - . Note "right end: F42G10" CHROMOSOME_X assembly_tag annotation 10064467 10064476 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag annotation 10064952 10064962 . + . Note "uncertain number of A's, edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag annotation 10066034 10066044 . + . Note "uncertain number of T's, edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag repeat 10067628 10067654 . - . Note "Repeats with contig seqF42G10.00003, offset 4676\n" CHROMOSOME_X assembly_tag repeat 10067628 10067662 . - . Note "Repeats with contig seqF42G10.00003, offset 4668\n" CHROMOSOME_X assembly_tag repeat 10067628 10067670 . - . Note "Repeats with contig seqF42G10.00003, offset 4660\n" CHROMOSOME_X assembly_tag repeat 10067628 10067678 . - . Note "Repeats with contig seqF42G10.00003, offset 4652\n" CHROMOSOME_X assembly_tag repeat 10067636 10067686 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag repeat 10067644 10067686 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag repeat 10067652 10067686 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag repeat 10067660 10067686 . - . Note "Repeats with contig seqF42G10.00003, offset 4644\n" CHROMOSOME_X assembly_tag Clone 10068243 10068248 . + . Note "left end: Start of ZC374" CHROMOSOME_X assembly_tag Clone 10068243 10068248 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 10068243 10068248 . + . Note "left end: ZC374" CHROMOSOME_X assembly_tag Finished 10068346 10068349 . - . Note "Right: VZC374L" CHROMOSOME_X assembly_tag annotation 10076648 10076725 . + . Note "Can't double strand terminator confirms sequence Only one clone but cosmid PCR size confirms no chimaera." CHROMOSOME_X assembly_tag annotation 10076752 10076782 . + . Note "Can't double strand Terminator confirms seq Only one clone but cosmid PCR size confirms no chimaera." CHROMOSOME_X assembly_tag Clone 10088737 10088742 . + . Note "left end: ZC373" CHROMOSOME_X assembly_tag Clone 10088737 10088742 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 10088737 10088742 . + . Note "left end: Start of ZC373" CHROMOSOME_X assembly_tag Clone 10088739 10088742 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 10100493 10100498 . + . Note "right end: ZC374" CHROMOSOME_X assembly_tag Clone 10115664 10115667 . + . Note "left end: W07E11" CHROMOSOME_X assembly_tag Clone 10115664 10115668 . + . Note "left end: " CHROMOSOME_X assembly_tag annotation 10115664 10115677 . + . Note "Start of W07E11" CHROMOSOME_X assembly_tag annotation 10123679 10123687 . + . Note "Last read of ZC373" CHROMOSOME_X assembly_tag Clone 10123749 10123754 . + . Note "right end: End of ZC373" CHROMOSOME_X assembly_tag Clone 10129763 10129768 . + . Note "left end: Start of T06H11" CHROMOSOME_X assembly_tag Clone 10129765 10129768 . + . Note "left end: T06H11" CHROMOSOME_X assembly_tag annotation 10135839 10135864 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10147789 10147808 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10150123 10150130 . + . Note "right end: W07E11" CHROMOSOME_X assembly_tag annotation 10150950 10150966 . + . Note "I think this is 17 but it could concievably be 16 or 18 Gs." CHROMOSOME_X assembly_tag annotation 10157258 10157268 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10157423 10157426 . + . Note "left end: F09B9" CHROMOSOME_X assembly_tag annotation 10160118 10160142 . + . Note "18 Gs : may be 19? " CHROMOSOME_X assembly_tag annotation 10165054 10165129 . + . Note "single stranded with terminators" CHROMOSOME_X assembly_tag annotation 10165668 10165697 . + . Note "single stranded with terminators" CHROMOSOME_X assembly_tag Clone 10171183 10171186 . + . Note "right end: T06H11" CHROMOSOME_X assembly_tag Clone 10171183 10171186 . + . Note "right end: T06H11" CHROMOSOME_X assembly_tag Finished 10195144 10195147 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10195246 10195249 . + . Note "right end: F09B9" CHROMOSOME_X assembly_tag Clone 10195246 10195249 . - . Note "right end: F09B9" CHROMOSOME_X assembly_tag Finished 10211922 10211925 . + . Note "Left: F21A10" CHROMOSOME_X assembly_tag Clone 10212018 10212021 . - . Note "right end: C07A4" CHROMOSOME_X assembly_tag Finished 10212018 10212021 . - . Note "Right: " CHROMOSOME_X assembly_tag Clone 10212018 10212021 . - . Note "right end: C07A4" CHROMOSOME_X assembly_tag Clone 10224817 10224820 . + . Note "left end: F44A6" CHROMOSOME_X assembly_tag Clone 10224817 10224820 . + . Note "left end: left F44A6 lorist6.rev" CHROMOSOME_X assembly_tag Finished 10224913 10224916 . - . Note "Right: F21A10" CHROMOSOME_X assembly_tag annotation 10249757 10249971 . + . Note "single strand, terminator" CHROMOSOME_X assembly_tag annotation 10250325 10250372 . + . CHROMOSOME_X assembly_tag annotation 10250863 10250985 . + . CHROMOSOME_X assembly_tag annotation 10251085 10251195 . + . Note "single strand, terminator" CHROMOSOME_X assembly_tag Clone 10252697 10252700 . + . Note "left end: LHE of C14H10" CHROMOSOME_X assembly_tag Clone 10252697 10252700 . + . Note "left end: left C14H10 pJB8.rev" CHROMOSOME_X assembly_tag annotation 10259518 10259527 . + . Note "Number of A's Gone with highest number(10)" CHROMOSOME_X assembly_tag Clone 10262775 10262778 . + . Note "right end: RHE of F44A6" CHROMOSOME_X assembly_tag annotation 10265067 10265143 . + . Note "Single stranded but terminator wd56f1 confirming seq" CHROMOSOME_X assembly_tag annotation 10265144 10265221 . + . Note "Single stranded but confirmed by terminator wd56f1 and wd59c4" CHROMOSOME_X assembly_tag annotation 10265222 10265294 . + . Note "Single stranded but seq confirmed by terminator wd59c4 and wd56f1" CHROMOSOME_X assembly_tag annotation 10278548 10278589 . + . Note "Single stranded but terminators wd56h6 and wd50e12 confirm seq." CHROMOSOME_X assembly_tag Clone 10279381 10279384 . + . Note "left end: LHE of C32A9" CHROMOSOME_X assembly_tag Finished 10279381 10279384 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10279381 10279384 . + . Note "left end: C32A9" CHROMOSOME_X assembly_tag Clone 10290510 10290513 . + . Note "right end: C14H10" CHROMOSOME_X assembly_tag Clone 10310460 10310463 . + . Note "left end: F41E7" CHROMOSOME_X assembly_tag Finished 10310460 10310463 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10310460 10310463 . + . Note "left end: Left Hand End of F41E7" CHROMOSOME_X assembly_tag Finished 10310560 10310566 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 10314828 10314830 . + . Note "This could be TTT not TAT. Unable to get a clear read through this area." CHROMOSOME_X assembly_tag Clone 10326852 10326855 . + . Note "right end: Right Hand End of C32A9" CHROMOSOME_X assembly_tag Clone 10347032 10347037 . + . Note "left end: ?Start of R07E3 Found by searching for the first read of R07E3 found in F41E7 in read only in R07E3 database" CHROMOSOME_X assembly_tag Clone 10347032 10347037 . + . Note "left end: left end 0f R07E3" CHROMOSOME_X assembly_tag Finished 10347140 10347146 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10349994 10349997 . + . Note "right end: F41E7" CHROMOSOME_X assembly_tag Finished 10386664 10386667 . + . Note "Left: Y49A10A" CHROMOSOME_X assembly_tag Clone 10386762 10386767 . + . Note "right end: <" CHROMOSOME_X assembly_tag Clone 10386762 10386767 . - . Note "right end: R07E3" CHROMOSOME_X assembly_tag annotation 10395747 10403393 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[X] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 7.9Kb of a TTTGGTGAAGCCAGGAGTAAAAAA motif assembled in with several base differences,2 forced joins and 2 single clone regions.The other motifs areTATGGTGAAGCCAGAGAGTAAAATATTGGGTGAAGCCAGAGAGTAAAATATTGGGTGAAGCCTAAGAGTAAAAAATATGGTGAAGCCAGAGAGTAAAAAATATGGTGAAGCCAGAGAGTACAATATTTGGTGAAGCCATAGAGTAAAATATATGGTGAAGCCAGAGAGTCAAATATACGGTGAAGCCAGAGAGTAAAATATTGAGTGAAGCCAGAGAGTCAAATA" CHROMOSOME_X assembly_tag annotation 10403409 10404556 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[X] Forced join[ ] OtherAdd a comment here -Tandem repeat, exact length unknown.Approximately 1.1Kb of TTATGGAGCGG motif assembled in with some base differences and 1 forced join." CHROMOSOME_X assembly_tag Clone 10410603 10410606 . + . Note "left end: F46F6" CHROMOSOME_X assembly_tag Clone 10410603 10410608 . + . Note "left end: start of F46F6" CHROMOSOME_X assembly_tag Finished 10410710 10410713 . - . Note "Right: Y49A10A" CHROMOSOME_X assembly_tag Clone 10436052 10436057 . + . Note "left end: start of ZC504" CHROMOSOME_X assembly_tag Clone 10436052 10436057 . + . Note "left end: ZC504" CHROMOSOME_X assembly_tag Clone 10454578 10454581 . + . Note "right end: F46F6" CHROMOSOME_X assembly_tag annotation 10467557 10467574 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10469906 10469943 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10470385 10470420 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10473698 10473701 . + . Note "left end: C39B10" CHROMOSOME_X assembly_tag Clone 10473698 10473701 . + . Note "left end: LHE of C39B10" CHROMOSOME_X assembly_tag Clone 10474615 10474620 . + . Note "right end: RHE of ZC504" CHROMOSOME_X assembly_tag annotation 10489854 10489864 . + . Note "Single stranded but has a terminator to confirm we14d12" CHROMOSOME_X assembly_tag annotation 10509473 10509495 . + . Note "Single stranded but terminator we13c9 confirms seq" CHROMOSOME_X assembly_tag Clone 10511593 10511596 . + . Note "left end: LHE of C33D3" CHROMOSOME_X assembly_tag Clone 10511593 10511596 . + . Note "left end: left C33D3 pJB8 forward" CHROMOSOME_X assembly_tag Clone 10517114 10517117 . + . Note "right end: right C39B10 pJB8.rev" CHROMOSOME_X assembly_tag annotation 10528427 10528436 . + . Note "11 A's in this clone" CHROMOSOME_X assembly_tag Clone 10529490 10529493 . + . Note "left end: left F14F3 lorist forward" CHROMOSOME_X assembly_tag Clone 10529490 10529493 . + . Note "left end: ?F14F3" CHROMOSOME_X assembly_tag Clone 10550112 10550115 . + . Note "right end: C33D3" CHROMOSOME_X assembly_tag annotation 10563901 10563904 . + . Note "run terminator" CHROMOSOME_X assembly_tag Finished 10564403 10564406 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10564403 10564406 . + . Note "left end: LEFT HAND END of F59F5" CHROMOSOME_X assembly_tag Clone 10564403 10564406 . + . Note "left end: F59F5" CHROMOSOME_X assembly_tag Clone 10568102 10568105 . + . Note "right end: RIGHT HAND END of F14F3" CHROMOSOME_X assembly_tag Clone 10599017 10599020 . + . Note "left end: LEFT HAND END of F57C7" CHROMOSOME_X assembly_tag Clone 10599017 10599020 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 10599017 10599020 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 10599118 10599122 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10603750 10603753 . + . Note "right end: RHE of F59F5" CHROMOSOME_X assembly_tag annotation 10605500 10605574 . + . Note "69 copies of TC shown. Restriction digest and PCR fragment agree, could be another 10 bases or so in the middle." CHROMOSOME_X assembly_tag annotation 10605575 10605642 . + . Note "69 copies of TC shown Restriction digest and PCR fragment agree could be another 10 bases or so in the middle" CHROMOSOME_X assembly_tag annotation 10605742 10605754 . + . Note "?2nd black tag" CHROMOSOME_X assembly_tag annotation 10619518 10619523 . + . Note "Point mutation on both wh89c5.s1 and wh89c5.s1t" CHROMOSOME_X assembly_tag Clone 10629060 10629063 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 10629060 10629063 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10629060 10629063 . + . Note "left end: LHE M79" CHROMOSOME_X assembly_tag Finished 10629160 10629164 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10639512 10639515 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 10639512 10639515 . + . Note "right end: End of F57C7" CHROMOSOME_X assembly_tag Clone 10662714 10662717 . + . Note "left end: F11A1" CHROMOSOME_X assembly_tag Clone 10662714 10662717 . + . Note "left end: Start of F11A1" CHROMOSOME_X assembly_tag Finished 10662814 10662817 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10668657 10668660 . + . Note "right end: M79" CHROMOSOME_X assembly_tag Finished 10701967 10701970 . + . Note "Left: VF13E6l" CHROMOSOME_X assembly_tag Clone 10702066 10702069 . + . Note "right end: F11A1" CHROMOSOME_X assembly_tag Clone 10702066 10702069 . - . Note "right end: right hand end F11A1" CHROMOSOME_X assembly_tag annotation 10703185 10703194 . + . Note "uncertain number of T's. Edited to the\nlongest run with several representatives." CHROMOSOME_X assembly_tag Clone 10704659 10704662 . + . Note "left end: Start of F13E6" CHROMOSOME_X assembly_tag Clone 10704659 10704662 . + . Note "left end: F13E6" CHROMOSOME_X assembly_tag annotation 10704663 10704742 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Finished 10704760 10704763 . - . Note "Right: VF13E6l" CHROMOSOME_X assembly_tag annotation 10710591 10710614 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10720417 10720420 . + . Note "left end: Start of C46B5" CHROMOSOME_X assembly_tag annotation 10726992 10727036 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10728658 10728812 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10741431 10741443 . + . Note "13a's on -ve strand 12a's on +ve strand Gone with highest number" CHROMOSOME_X assembly_tag annotation 10743039 10743084 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10743878 10743881 . + . Note "right end: F13E6" CHROMOSOME_X assembly_tag Finished 10743878 10743887 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10743978 10743981 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 10745373 10745376 . + . Note "left end: T01C1" CHROMOSOME_X assembly_tag Clone 10745373 10745376 . + . Note "left end: START of T01C1" CHROMOSOME_X assembly_tag Finished 10745473 10745482 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10764837 10764840 . + . Note "right end: END of C46B5" CHROMOSOME_X assembly_tag Clone 10772874 10772879 . + . Note "left end: START of R07A4 therefore no YAC bridge" CHROMOSOME_X assembly_tag annotation 10772874 10772879 . + . Note "This is the start of R07A4 it has been impossible to finish this cosmid due to the large repeat section in the middle and due to the nature of the repeat i.e. one base difference in some repeats. Also there is evidence from the restriction digest that some deletion is occuring during growth." CHROMOSOME_X assembly_tag Clone 10772874 10772879 . + . Note "left end: This is the clone left end of R07A4 This is the start of R07A4 it has been impossible to finish this cosmid due to the large repeat section in the middle and due to the nature of the repeat i.e. one base difference in some repeats. Also there is evidence from the restriction digest that some deletion is occuring during growth" CHROMOSOME_X assembly_tag Clone 10782500 10782503 . + . Note "right end: this is the clone right end of T01C1 " CHROMOSOME_X assembly_tag annotation 10783664 10783667 . + . Note "Start of first complete repeat segment preceded by defective partial repeats. Repeats of 214 and 149 type." CHROMOSOME_X assembly_tag annotation 10784538 10784541 . + . Note "Break contig at TCCC and insert 20 copies of 214 base repeat ( possibly one 149 also ) 214 repeat consensus : TCCCAGTAGGTGCCAGAAGCTCCGAGCAGTTACAGAAAACCTACAGTACCTTTGTGCGTATTTTATTATTAAATGAAAACGACCATTTATAGGCAAAATAGGTAAATTTATGAAACTTTGAAAATTCCCAAATCACTTCAAACCAACTTTTTTTGAAATTTCTTTCAGAAACTTTGTTGCAAATTCCAAGCTTTTTCAGAATTTACCAACAACA Consensus of 149 repeat : TCCCAGTAGGTGCCAGAAGCTCCGAGCAGTTACAGAAAACCTACAGTACCTTTGTGCGTATTTTATTATTAAATGAAAACGACCATTCATAGGCATCTTTCAGAAACTTTGTTGCAAATTCCAAGCTTTTTCAGAATTTACCAACAACA " CHROMOSOME_X assembly_tag annotation 10785115 10785118 . + . Note "Return to main contig here ( One more 214 repeat , also an incomplete repeat and then unique )" CHROMOSOME_X assembly_tag annotation 10785457 10785466 . + . Note "last bases of repeat" CHROMOSOME_X assembly_tag Clone 10801785 10801788 . + . Note "left end: T05A10 left lorist fwd" CHROMOSOME_X assembly_tag Finished 10801785 10801788 . + . Note "Left: T05A10" CHROMOSOME_X assembly_tag Clone 10809579 10809584 . + . Note "left end: This is the clone left end of R07A4 ." CHROMOSOME_X assembly_tag Clone 10830727 10830730 . + . Note "left end: F31B12" CHROMOSOME_X assembly_tag Clone 10830727 10830730 . + . Note "left end: left F31B12 lorist fwd" CHROMOSOME_X assembly_tag Finished 10830828 10830831 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10838823 10838826 . + . Note "right end: T05A10" CHROMOSOME_X assembly_tag annotation 10838827 10838835 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10845197 10845238 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10848668 10848707 . + . Note "single stranded with terminatoe" CHROMOSOME_X assembly_tag annotation 10850514 10850538 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10852782 10852825 . + . Note "run terminator!" CHROMOSOME_X assembly_tag annotation 10855321 10855324 . + . CHROMOSOME_X assembly_tag annotation 10855340 10855371 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 10856215 10856263 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 10860197 10860200 . + . Note "left end: C05A9" CHROMOSOME_X assembly_tag Finished 10860197 10860200 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10860197 10860200 . + . Note "left end: C05A9" CHROMOSOME_X assembly_tag Clone 10875047 10875050 . + . Note "right end: F31B12" CHROMOSOME_X assembly_tag annotation 10875984 10876001 . + . Note "?single stranded and only one clone." CHROMOSOME_X assembly_tag annotation 10876007 10876007 . + . Note "phagemid reads 1 G, m13 reads 2." CHROMOSOME_X assembly_tag annotation 10889490 10889493 . + . Note "As and C corrected from AAATCC" CHROMOSOME_X assembly_tag Clone 10894405 10894408 . + . Note "left end: T21E8" CHROMOSOME_X assembly_tag Clone 10894405 10894408 . + . Note "left end: ? T21E8" CHROMOSOME_X assembly_tag Finished 10894405 10894408 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 10894501 10894505 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10904096 10904098 . + . Note "right end: C05A9" CHROMOSOME_X assembly_tag Finished 10922054 10922057 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 10922054 10922057 . + . Note "left end: F47B10" CHROMOSOME_X assembly_tag Clone 10922054 10922057 . + . Note "left end: F47B10" CHROMOSOME_X assembly_tag Finished 10922165 10922168 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10926457 10926460 . + . Note "right end: T21E8" CHROMOSOME_X assembly_tag Clone 10952911 10952914 . + . Note "left end: T21B6" CHROMOSOME_X assembly_tag Clone 10952911 10952914 . + . Note "left end: Clone left end of T21B6" CHROMOSOME_X assembly_tag Finished 10953011 10953014 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 10960105 10960108 . + . Note "right end: Clone right end of F47B10" CHROMOSOME_X assembly_tag Clone 10983526 10983529 . + . Note "left end: K09C8" CHROMOSOME_X assembly_tag Clone 10983526 10983529 . + . Note "left end: Clone left end of K09C8" CHROMOSOME_X assembly_tag Clone 10989125 10989128 . + . Note "right end: T21B6" CHROMOSOME_X assembly_tag annotation 10989129 10989134 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11008911 11008928 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 11010922 11010925 . + . Note "left end: F59F3" CHROMOSOME_X assembly_tag Clone 11010922 11010925 . + . Note "left end: F59F3" CHROMOSOME_X assembly_tag Clone 11018488 11018491 . + . Note "right end: K09C8" CHROMOSOME_X assembly_tag annotation 11034076 11034083 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Clone 11040352 11040355 . + . Note "left end: F58A3" CHROMOSOME_X assembly_tag Finished 11040352 11040355 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11040352 11040355 . + . Note "left end: Left Hand End F58A3" CHROMOSOME_X assembly_tag Clone 11052168 11052171 . - . Note "right end: Right Hand End F59F3" CHROMOSOME_X assembly_tag annotation 11068811 11068838 . + . Note ""up to 28 G's"" CHROMOSOME_X assembly_tag Finished 11076033 11076036 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11076033 11076036 . + . Note "left end: C09F12" CHROMOSOME_X assembly_tag Clone 11076033 11076036 . + . Note "left end: Left Hand End C09F12" CHROMOSOME_X assembly_tag Finished 11076149 11076153 . - . Note "Right: " CHROMOSOME_X assembly_tag Clone 11082814 11082817 . + . Note "right end: F58A3" CHROMOSOME_X assembly_tag oligo 11085266 11085294 . + . Note "C09F12 36.8 CAA TGA CTA GAG CTA CAT TTT TTG AAA AC 36.8 for klentaq" CHROMOSOME_X assembly_tag Clone 11092838 11092845 . + . Note "left end: W04G3" CHROMOSOME_X assembly_tag Clone 11092838 11092845 . + . Note "left end: START of W04G3" CHROMOSOME_X assembly_tag Finished 11092939 11092951 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11117380 11117383 . + . Note "right end: END of C09F12" CHROMOSOME_X assembly_tag Clone 11124895 11124898 . + . Note "left end: Start of W02H3 (no cosmid vector as W02H3 is chimeric at the start)" CHROMOSOME_X assembly_tag Clone 11124895 11124898 . + . Note "left end: This is the clone left end of W02H3 , at this point W02H3 and W04G3 diverged as W02H3 was chimaeric." CHROMOSOME_X assembly_tag Clone 11131269 11131272 . + . Note "right end: This is the clone right end of W04G3." CHROMOSOME_X assembly_tag Clone 11142510 11142515 . + . Note "left end: This is the clone left end of R08B4." CHROMOSOME_X assembly_tag Clone 11142510 11142515 . + . Note "left end: Clone right end of R08B4 . " CHROMOSOME_X assembly_tag Finished 11142510 11142515 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11148789 11148792 . + . Note "right end: RHE of W02H3" CHROMOSOME_X assembly_tag Clone 11148790 11148792 . + . Note "right end: ?RHE of W02H3" CHROMOSOME_X assembly_tag Clone 11148792 11148792 . + . Note "left end: Amanda's Lhe W02H3" CHROMOSOME_X assembly_tag annotation 11160913 11160930 . + . Note "18 G's s1 read and terminator agree" CHROMOSOME_X assembly_tag Finished 11167895 11167898 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11167895 11167898 . + . Note "left end: LHE of C05C9" CHROMOSOME_X assembly_tag Clone 11167895 11167898 . + . Note "left end: C05C9" CHROMOSOME_X assembly_tag Finished 11168000 11168004 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11182972 11182977 . + . Note "right end: R08B4" CHROMOSOME_X assembly_tag Finished 11201625 11201628 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11201625 11201628 . + . Note "left end: F13D2" CHROMOSOME_X assembly_tag Clone 11201625 11201628 . + . Note "left end: Start of F13D2" CHROMOSOME_X assembly_tag Clone 11209388 11209391 . + . Note "right end: End of C05C9" CHROMOSOME_X assembly_tag Finished 11223819 11223822 . + . Note "Left: C34F6" CHROMOSOME_X assembly_tag Clone 11223819 11223822 . + . Note "left end: Start of C34F6\n" CHROMOSOME_X assembly_tag Clone 11223819 11223823 . + . Note "left end: Start of C34F6" CHROMOSOME_X assembly_tag Clone 11239058 11239061 . - . Note "right end: End of F13D2\n" CHROMOSOME_X assembly_tag Clone 11268184 11268188 . + . Note "left end: C03A3" CHROMOSOME_X assembly_tag Finished 11268184 11268188 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11268184 11268187 . - . Note "right end: C34F6" CHROMOSOME_X assembly_tag Finished 11268184 11268187 . - . Note "Right: C34F6" CHROMOSOME_X assembly_tag Clone 11308356 11308359 . + . Note "left end: F38B2" CHROMOSOME_X assembly_tag Clone 11308356 11308359 . + . Note "left end: F38B2" CHROMOSOME_X assembly_tag Finished 11308464 11308468 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11309397 11309400 . + . Note "right end: C03A3" CHROMOSOME_X assembly_tag annotation 11316524 11316530 . + . CHROMOSOME_X assembly_tag annotation 11317964 11318023 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11318849 11318884 . + . Note "single stramded with terminator" CHROMOSOME_X assembly_tag annotation 11320474 11320495 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11322839 11323043 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11323044 11323104 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11323105 11323168 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11325445 11325560 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11325561 11325685 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11325686 11325740 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11326652 11326688 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11326688 11326749 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag annotation 11327221 11327333 . + . Note "single stranded with terminator" CHROMOSOME_X assembly_tag Finished 11328107 11328110 . + . Note "Left: F08G12" CHROMOSOME_X assembly_tag Clone 11328107 11328110 . + . Note "left end: Clone left end of F08G12" CHROMOSOME_X assembly_tag Clone 11328107 11328110 . + . Note "left end: F08G12" CHROMOSOME_X assembly_tag Clone 11344631 11344634 . + . Note "right end: Clone right end of F38B2" CHROMOSOME_X assembly_tag Clone 11344631 11344634 . + . Note "right end: Clone right end of F38B2 " CHROMOSOME_X assembly_tag annotation 11348846 11348850 . + . Note "Unclear" CHROMOSOME_X assembly_tag annotation 11348896 11348900 . + . Note "Unclear" CHROMOSOME_X assembly_tag Clone 11354167 11354170 . + . Note "left end: Clone left end of ZK455" CHROMOSOME_X assembly_tag Clone 11354167 11354170 . + . Note "left end: LHE of ZK455" CHROMOSOME_X assembly_tag Finished 11354167 11354170 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 11354269 11354274 . + . Note "Right: F08G12" CHROMOSOME_X assembly_tag Clone 11362123 11362127 . + . Note "right end: F08G12 RHE" CHROMOSOME_X assembly_tag Clone 11387964 11387967 . + . Note "left end: Start of F42E11" CHROMOSOME_X assembly_tag Clone 11387964 11387967 . + . Note "left end: LHE of F42E11" CHROMOSOME_X assembly_tag Finished 11387964 11387967 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 11388064 11388070 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11389176 11389179 . + . Note "right end: end of ZK455" CHROMOSOME_X assembly_tag Clone 11418228 11418231 . + . Note "left end: start of F08B12" CHROMOSOME_X assembly_tag Clone 11418228 11418231 . + . Note "left end: F08B12" CHROMOSOME_X assembly_tag Finished 11418228 11418231 . + . Note "Left: F08B12" CHROMOSOME_X assembly_tag Finished 11418340 11418345 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11421882 11421885 . + . Note "right end: F42E11" CHROMOSOME_X assembly_tag Clone 11445243 11445246 . + . Note "left end: F46C3" CHROMOSOME_X assembly_tag Clone 11445243 11445246 . + . Note "left end: Clone left end of F46C3" CHROMOSOME_X assembly_tag Finished 11445243 11445252 . + . Note "Left: F46C3" CHROMOSOME_X assembly_tag Finished 11445343 11445346 . + . Note "Right: F08B12" CHROMOSOME_X assembly_tag Clone 11456801 11456804 . + . Note "right end: Clone right end of F08B12" CHROMOSOME_X assembly_tag annotation 11464762 11464768 . + . Note "Possible point mutation cc or ccc" CHROMOSOME_X assembly_tag annotation 11464764 11464766 . + . Note "Possible point mutation cc or ccc" CHROMOSOME_X assembly_tag Clone 11474960 11474963 . + . Note "left end: Clone left end of F48C5" CHROMOSOME_X assembly_tag Clone 11474960 11474963 . + . Note "left end: F48C5" CHROMOSOME_X assembly_tag Finished 11474960 11474963 . + . Note "Left: F48C5" CHROMOSOME_X assembly_tag Finished 11475011 11475019 . + . Note "Right: F46C3" CHROMOSOME_X assembly_tag annotation 11475277 11475289 . + . CHROMOSOME_X assembly_tag annotation 11475277 11478003 . + . Note "Multiple copies of a 25-26mer which are variations of CCGTAATGCCTAACTTTAGAATCTG" CHROMOSOME_X assembly_tag annotation 11475277 11478003 . + . Note "Tandemly repetitive sequences.Restriction data from cosmid DNA suggests approximately 5kb are missing from this region.The HaeIII restriction fragment size from cosmid DNA corresponding to this region is approximately 7900 bp.Because of the repetitive nature of this sequence, base accuracy cannot be guaranteed in this region. The size of this region has not been predicted using non-clonedgenomic DNA. " CHROMOSOME_X assembly_tag annotation 11475277 11475289 . - . CHROMOSOME_X assembly_tag annotation 11477024 11478020 . + . Note "Multiple copies of a 25-26mer which are variations of \n\nCATTGCGGCGGATTTTAGAAAAATG\n" CHROMOSOME_X assembly_tag Clone 11484315 11484318 . - . Note "right end: F46C3" CHROMOSOME_X assembly_tag Clone 11494578 11494581 . + . Note "left end: T25C12" CHROMOSOME_X assembly_tag Finished 11494578 11494581 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11494578 11494581 . + . Note "left end: T25C12" CHROMOSOME_X assembly_tag Finished 11494678 11494682 . - . Note "Right: F48C5" CHROMOSOME_X assembly_tag Clone 11508473 11508476 . + . Note "right end: F48C5" CHROMOSOME_X assembly_tag annotation 11516717 11516724 . + . CHROMOSOME_X assembly_tag Finished 11527514 11527518 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11527619 11527622 . + . Note "right end: T25C12" CHROMOSOME_X assembly_tag Finished 11527619 11527622 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11527619 11527622 . - . Note "right end: T25C12 RHE" CHROMOSOME_X assembly_tag Finished 11531846 11531849 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11531846 11531849 . + . Note "left end: F29G6 LHE" CHROMOSOME_X assembly_tag Clone 11531846 11531849 . + . Note "left end: F29G6" CHROMOSOME_X assembly_tag Finished 11531948 11531951 . - . Note "Right: " CHROMOSOME_X assembly_tag Clone 11562686 11562689 . + . Note "left end: C35C5" CHROMOSOME_X assembly_tag Finished 11562686 11562689 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 11562790 11562794 . + . Note "Right: " CHROMOSOME_X assembly_tag comment 11589355 11589355 . + . Note "?Do term poss retracking" CHROMOSOME_X assembly_tag Finished 11606659 11606662 . + . Note "Left: H05G16" CHROMOSOME_X assembly_tag Clone 11606770 11606773 . + . Note "right end: C35C5" CHROMOSOME_X assembly_tag Finished 11606770 11606773 . + . Note "Right: " CHROMOSOME_X assembly_tag Finished 11617195 11617198 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 11617195 11617198 . + . Note "left end: F52D10\n" CHROMOSOME_X assembly_tag oligo 11617286 11617308 . + . Note "serial#=F52D10.10 template=wk31f3.s1 sequence=m13fGGTCTGCAAAAAATTATTGTTAC flags=" CHROMOSOME_X assembly_tag Finished 11617302 11617305 . - . Note "Right: H05G16" CHROMOSOME_X assembly_tag oligo 11620348 11620368 . + . Note "serial#=F52D10.6 template=wk11c3.s1 sequence=GGCAGCAATAAAAGTTAAAAC flags=" CHROMOSOME_X assembly_tag resolved 11620396 11620403 . + . Note "compression: " CHROMOSOME_X assembly_tag resolved 11620483 11620488 . + . Note "compression: " CHROMOSOME_X assembly_tag comment 11621018 11621027 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag oligo 11621033 11621051 . + . Note "serial#=F52D10.5 template=wk13g2.s1 sequence=GCAAGCACTACAATTTTTC flags=" CHROMOSOME_X assembly_tag comment 11621117 11621185 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag comment 11621683 11621721 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11622552 11622555 . + . CHROMOSOME_X assembly_tag compression 11622565 11622572 . + . CHROMOSOME_X assembly_tag comment 11622819 11622845 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11623040 11623076 . + . Note "?single stranded" CHROMOSOME_X assembly_tag unknown 11623091 11623093 . + . CHROMOSOME_X assembly_tag unknown 11623107 11623108 . + . CHROMOSOME_X assembly_tag ambiguous 11623139 11623139 . + . CHROMOSOME_X assembly_tag comment 11623405 11623468 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11623469 11623556 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11623557 11623604 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11623605 11623922 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11623716 11623722 . + . CHROMOSOME_X assembly_tag comment 11623923 11624080 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11624081 11624120 . + . Note "?" CHROMOSOME_X assembly_tag ambiguous 11624083 11624085 . + . CHROMOSOME_X assembly_tag comment 11624155 11624337 . + . Note "?" CHROMOSOME_X assembly_tag oligo 11624196 11624213 . + . Note "serial#=F52D10.1 sequence=TAAATGTTCGCTAGACAC flags=" CHROMOSOME_X assembly_tag comment 11624338 11624500 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11624854 11624883 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11625059 11625066 . + . Note "?diverges" CHROMOSOME_X assembly_tag resolved 11625243 11625247 . + . Note "compression: " CHROMOSOME_X assembly_tag comment 11628661 11628892 . + . Note "?single stranded" CHROMOSOME_X assembly_tag oligo 11628941 11628961 . + . Note "serial#=F52D10.2 template=wk28d9.s1 sequence=CTGCAATGTATTGTAAATTGG flags=" CHROMOSOME_X assembly_tag compression 11628962 11628970 . + . CHROMOSOME_X assembly_tag compression 11629953 11629959 . + . CHROMOSOME_X assembly_tag compression 11630280 11630282 . + . CHROMOSOME_X assembly_tag unknown 11630410 11630413 . + . CHROMOSOME_X assembly_tag compression 11631070 11631074 . + . CHROMOSOME_X assembly_tag comment 11631167 11631178 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11631842 11631850 . + . CHROMOSOME_X assembly_tag compression 11632045 11632054 . + . CHROMOSOME_X assembly_tag compression 11632058 11632069 . + . CHROMOSOME_X assembly_tag compression 11632224 11632233 . + . CHROMOSOME_X assembly_tag compression 11632232 11632246 . + . CHROMOSOME_X assembly_tag compression 11632284 11632291 . + . CHROMOSOME_X assembly_tag comment 11632556 11632568 . + . Note "?single stranded" CHROMOSOME_X assembly_tag oligo 11633213 11633230 . + . Note "serial#=F52D10.3 template=wk31c1.s1 sequence=TTTCAAGTCTCTGAACAC flags=" CHROMOSOME_X assembly_tag repeat 11633247 11633265 . + . Note "Repeats with contig wk31d4.s1, offset 16058" CHROMOSOME_X assembly_tag repeat 11633247 11633267 . + . Note "Repeats with contig wk31d4.s1, offset 16056" CHROMOSOME_X assembly_tag repeat 11633249 11633269 . + . Note "Repeats with contig wk31d4.s1, offset 16054" CHROMOSOME_X assembly_tag repeat 11633251 11633269 . + . Note "Repeats with contig wk31d4.s1, offset 16054" CHROMOSOME_X assembly_tag unknown 11633271 11633274 . + . CHROMOSOME_X assembly_tag comment 11633288 11633408 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11633714 11633716 . + . CHROMOSOME_X assembly_tag oligo 11634042 11634058 . + . Note "serial#=F52D10.4 template=wk27d3.s1 sequence=GTAAGCTGCTAGTGAAC flags=" CHROMOSOME_X assembly_tag compression 11634505 11634509 . + . CHROMOSOME_X assembly_tag oligo 11634628 11634645 . + . Note "serial#=F52D10.14 template=wk13g11.s1 sequence=CTTTCAATAGGTCGAAGG flags=" CHROMOSOME_X assembly_tag ambiguous 11634744 11634749 . + . CHROMOSOME_X assembly_tag compression 11634810 11634812 . + . CHROMOSOME_X assembly_tag oligo 11634850 11634866 . + . Note "serial#=F52D10.12 template=wk31h4.s1 sequence=TGCACACTGTCTTCTTG flags=" CHROMOSOME_X assembly_tag compression 11637473 11637483 . + . CHROMOSOME_X assembly_tag compression 11637483 11637492 . + . CHROMOSOME_X assembly_tag compression 11638415 11638419 . + . CHROMOSOME_X assembly_tag compression 11638638 11638644 . + . CHROMOSOME_X assembly_tag compression 11638704 11638710 . + . CHROMOSOME_X assembly_tag oligo 11638781 11638797 . + . Note "serial#=F52D10 template=wk27b4.s1 sequence=GGTGAGTTGGTTGCATC flags=" CHROMOSOME_X assembly_tag comment 11638930 11639079 . + . Note "?single stranded" CHROMOSOME_X assembly_tag oligo 11638953 11638975 . + . Note "serial#=F52D10.16 template=wk31b5.s1 sequence=GCGTAGTTTTTGAAAATAAACTC flags=" CHROMOSOME_X assembly_tag oligo 11638980 11638996 . + . Note "serial#=F52D10.7 template=wk32h5.s1 sequence=ATGTGGAATTGGGTCGC flags=" CHROMOSOME_X assembly_tag stop 11639068 11639071 . + . CHROMOSOME_X assembly_tag comment 11639080 11639095 . + . Note "?single stranded" CHROMOSOME_X assembly_tag unknown 11639140 11639141 . + . CHROMOSOME_X assembly_tag ambiguous 11639335 11639339 . + . CHROMOSOME_X assembly_tag compression 11639449 11639454 . + . CHROMOSOME_X assembly_tag compression 11639563 11639578 . + . CHROMOSOME_X assembly_tag compression 11639947 11639951 . + . CHROMOSOME_X assembly_tag comment 11640061 11640195 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11640638 11640644 . + . CHROMOSOME_X assembly_tag compression 11640726 11640736 . + . CHROMOSOME_X assembly_tag compression 11640834 11640840 . + . CHROMOSOME_X assembly_tag comment 11640845 11640922 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11642077 11642087 . + . Note "?single stranded " CHROMOSOME_X assembly_tag compression 11642492 11642498 . + . CHROMOSOME_X assembly_tag compression 11642501 11642510 . + . CHROMOSOME_X assembly_tag compression 11642641 11642645 . + . CHROMOSOME_X assembly_tag comment 11643014 11643130 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11643131 11643231 . + . Note "?single stranded" CHROMOSOME_X assembly_tag unknown 11643270 11643274 . + . Note "repeat!!??????" CHROMOSOME_X assembly_tag ambiguous 11643272 11643272 . + . Note "mutation???????" CHROMOSOME_X assembly_tag compression 11645062 11645066 . + . CHROMOSOME_X assembly_tag compression 11645068 11645081 . + . Note "?" CHROMOSOME_X assembly_tag compression 11645080 11645090 . + . CHROMOSOME_X assembly_tag compression 11645147 11645156 . + . CHROMOSOME_X assembly_tag oligo 11645654 11645670 . + . Note "serial#=F52D10.15 template=wk11a6.s1 sequence=TGTGCCCATTTTGAGTC flags=" CHROMOSOME_X assembly_tag oligo 11645875 11645891 . + . Note "serial#=F52D10.17 template=wk28d8.s1 sequence=CGATGATGGGAGAGTTC flags=" CHROMOSOME_X assembly_tag comment 11646749 11646862 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11646960 11646987 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag comment 11646988 11647087 . + . Note "?single stranded with terminator" CHROMOSOME_X assembly_tag ambiguous 11647723 11647732 . + . CHROMOSOME_X assembly_tag repeat 11647903 11647926 . + . Note "Repeats with contig wk28d8.s2t, offset 53" CHROMOSOME_X assembly_tag comment 11647947 11647981 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11647982 11648066 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11648236 11648239 . + . CHROMOSOME_X assembly_tag resolved 11648456 11648465 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 11649302 11649313 . + . CHROMOSOME_X assembly_tag compression 11649316 11649321 . + . CHROMOSOME_X assembly_tag resolved 11649979 11649984 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 11650587 11650592 . + . CHROMOSOME_X assembly_tag resolved 11650593 11650598 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 11651000 11651008 . + . CHROMOSOME_X assembly_tag oligo 11651158 11651175 . + . Note "serial#=F52D10.18 template=wk29b4.s1 sequence=TTAAGCGTCTACCATTTG flags=" CHROMOSOME_X assembly_tag comment 11651295 11651550 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11654125 11654155 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11654156 11654284 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11654275 11654277 . + . CHROMOSOME_X assembly_tag oligo 11654933 11654949 . + . Note "serial#=F52D10.8 template=wk33f7.s1a sequence=TCCCCAGAATAAGGTTG flags=" CHROMOSOME_X assembly_tag comment 11655001 11655071 . + . Note "?single stranded" CHROMOSOME_X assembly_tag comment 11655072 11655166 . + . Note "?single stranded" CHROMOSOME_X assembly_tag ambiguous 11655132 11655153 . + . CHROMOSOME_X assembly_tag comment 11657799 11657894 . + . Note "?single stranded" CHROMOSOME_X assembly_tag compression 11657881 11657896 . + . CHROMOSOME_X assembly_tag oligo 11658049 11658065 . + . Note "serial#=F52D10.9 template=wk30a6.s1 sequence=m13rGCCACAAAAGTCCATCG flags=" CHROMOSOME_X assembly_tag Finished 11658067 11658070 . + . Note "Left: Y71H9A" CHROMOSOME_X assembly_tag compression 11658143 11658158 . + . CHROMOSOME_X assembly_tag Finished 11658163 11658166 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 11658163 11658166 . - . Note "right end: F52D10" CHROMOSOME_X assembly_tag annotation 11678177 11678349 . + . Note "First select a Feature -\n[ ] Unsure\n[x] Misc_feature\nThen select the text for the note(s) -\n[x] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\nCould be a couple more copies of the \ndimer CA" CHROMOSOME_X assembly_tag Finished 11679372 11679375 . + . Note "Left: T04F8" CHROMOSOME_X assembly_tag Clone 11679372 11679375 . + . Note "left end: T04F8" CHROMOSOME_X assembly_tag Clone 11679372 11679375 . + . Note "left end: T04F8" CHROMOSOME_X assembly_tag Finished 11679468 11679471 . - . Note "Right: Y71H9A" CHROMOSOME_X assembly_tag Clone 11707854 11707857 . + . Note "left end: C44C10" CHROMOSOME_X assembly_tag Finished 11717129 11717137 . + . Note "Left: C44C10" CHROMOSOME_X assembly_tag cosmid 11717238 11717243 . + . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11717237 11717243 . - . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11717238 11717243 . - . Note "vector: Clone right end of T04F8" CHROMOSOME_X assembly_tag Clone 11717240 11717243 . - . Note "right end: T04F8" CHROMOSOME_X assembly_tag Clone 11717240 11717243 . - . Note "right end: T04F8" CHROMOSOME_X assembly_tag Finished 11717240 11717243 . - . Note "Right: T04F8" CHROMOSOME_X assembly_tag compression 11718236 11718282 . - . CHROMOSOME_X assembly_tag compression 11719559 11719567 . - . CHROMOSOME_X assembly_tag compression 11722045 11722052 . - . CHROMOSOME_X assembly_tag compression 11722248 11722258 . - . CHROMOSOME_X assembly_tag repeat 11722726 11722765 . - . Note "Repeats with contig wn78c10.s1, offset 29449\n" CHROMOSOME_X assembly_tag repeat 11722726 11722765 . - . Note "Repeats with contig wk47a7.s1, offset 6641\n" CHROMOSOME_X assembly_tag repeat 11722738 11722776 . - . Note "Repeats with contig wn78c10.s1, offset 29654\n" CHROMOSOME_X assembly_tag repeat 11722738 11722776 . - . Note "Repeats with contig wk47a7.s1, offset 6846\n" CHROMOSOME_X assembly_tag repeat 11722787 11722838 . - . Note "Repeats with contig wk47a7.s1, offset 6784\n" CHROMOSOME_X assembly_tag repeat 11722787 11722838 . - . Note "Repeats with contig wn78c10.s1, offset 29592\n" CHROMOSOME_X assembly_tag repeat 11722846 11722873 . - . CHROMOSOME_X assembly_tag repeat 11722846 11722873 . - . Note "Repeats with contig wn78c10.s1, offset 29449\n" CHROMOSOME_X assembly_tag repeat 11722846 11722884 . - . CHROMOSOME_X assembly_tag repeat 11722846 11722884 . - . Note "Repeats with contig wn78c10.s1, offset 29762\n" CHROMOSOME_X assembly_tag repeat 11722895 11722946 . - . CHROMOSOME_X assembly_tag repeat 11722895 11722946 . - . Note "Repeats with contig wn78c10.s1, offset 29700\n" CHROMOSOME_X assembly_tag repeat 11723050 11723089 . - . Note "Repeats with contig wn78c10.s1, offset 29773\n" CHROMOSOME_X assembly_tag repeat 11723050 11723089 . - . CHROMOSOME_X assembly_tag repeat 11723062 11723089 . - . Note "Repeats with contig wn78c10.s1, offset 29665\n" CHROMOSOME_X assembly_tag repeat 11723062 11723089 . - . CHROMOSOME_X assembly_tag repeat 11724988 11725014 . - . CHROMOSOME_X assembly_tag repeat 11724988 11725014 . - . Note "Repeats with contig wn78c10.s1, offset 27353\n" CHROMOSOME_X assembly_tag repeat 11725159 11725185 . - . CHROMOSOME_X assembly_tag repeat 11725159 11725185 . - . Note "Repeats with contig wn78c10.s1, offset 27524\n" CHROMOSOME_X assembly_tag compression 11725282 11725292 . - . CHROMOSOME_X assembly_tag compression 11725369 11725387 . - . CHROMOSOME_X assembly_tag compression 11726558 11726570 . - . CHROMOSOME_X assembly_tag compression 11726858 11726877 . - . CHROMOSOME_X assembly_tag compression 11728575 11728589 . - . CHROMOSOME_X assembly_tag oligo 11729134 11729150 . + . Note "serial#=C44C10.5\ntemplate=wk42c5.s1 \nsequence=AAGTGGCATGGCTACTG\nflags=\n" CHROMOSOME_X assembly_tag oligo 11729301 11729317 . + . Note "serial#=C44C10.4\ntemplate=wn77d11.s1 \nsequence=ATTGGACGAGGAAGAGC\nflags=\n" CHROMOSOME_X assembly_tag oligo 11729450 11729466 . - . Note "serial#=C44C10.3\ntemplate=wk41c12.s1a \nsequence=GTCGATGACAACAAGTG\nflags=\n" CHROMOSOME_X assembly_tag compression 11730807 11730815 . - . CHROMOSOME_X assembly_tag compression 11731241 11731259 . + . CHROMOSOME_X assembly_tag compression 11731588 11731599 . + . CHROMOSOME_X assembly_tag annotation 11731608 11731625 . - . Note "possible point mutation \ncattt c gccaatt\ncattt gccaatt" CHROMOSOME_X assembly_tag compression 11733126 11733141 . + . CHROMOSOME_X assembly_tag compression 11734971 11734981 . + . CHROMOSOME_X assembly_tag compression 11735513 11735523 . + . CHROMOSOME_X assembly_tag compression 11736286 11736297 . + . CHROMOSOME_X assembly_tag compression 11739339 11739349 . + . CHROMOSOME_X assembly_tag compression 11739446 11739462 . + . CHROMOSOME_X assembly_tag compression 11743879 11743892 . - . CHROMOSOME_X assembly_tag compression 11744955 11744967 . - . CHROMOSOME_X assembly_tag oligo 11745676 11745692 . + . Note "serial#=C44C10.2\ntemplate=wk41g11.s1 \nsequence=GTTGTTTCCGTTGCCTC\nflags=\n" CHROMOSOME_X assembly_tag oligo 11745931 11745947 . - . Note "serial#=C44C10.1\ntemplate=wm48a12.s1 \nsequence=GAAACAACGGAAACGCC\nflags=\n" CHROMOSOME_X assembly_tag compression 11746173 11746190 . + . CHROMOSOME_X assembly_tag compression 11746226 11746244 . + . CHROMOSOME_X assembly_tag compression 11747071 11747088 . + . CHROMOSOME_X assembly_tag compression 11747136 11747148 . + . CHROMOSOME_X assembly_tag compression 11747296 11747311 . + . CHROMOSOME_X assembly_tag compression 11749761 11749774 . + . CHROMOSOME_X assembly_tag Clone 11750516 11750519 . + . Note "left end: D1053" CHROMOSOME_X assembly_tag cosmid 11750516 11750521 . + . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11750516 11750519 . - . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11750516 11750520 . - . Note "vector: " CHROMOSOME_X assembly_tag compression 11750696 11750712 . + . CHROMOSOME_X assembly_tag Finished 11752475 11752479 . + . Note "Left: D1053" CHROMOSOME_X assembly_tag cosmid 11752534 11752537 . + . Note "vector: " CHROMOSOME_X assembly_tag Finished 11752534 11752537 . - . Note "Right: C44C10" CHROMOSOME_X assembly_tag Clone 11752534 11752537 . - . Note "right end: C44C10" CHROMOSOME_X assembly_tag Clone 11752534 11752537 . - . Note "right end: C44C10" CHROMOSOME_X assembly_tag cosmid 11775526 11775537 . - . Note "vector: " CHROMOSOME_X assembly_tag cosmid 11778104 11778207 . + . Note "vector: pJB8" CHROMOSOME_X assembly_tag Clone 11795639 11795642 . - . Note "right end: D1053" CHROMOSOME_X assembly_tag cosmid 11795639 11795642 . - . Note "vector: " CHROMOSOME_X assembly_tag Finished 11813136 11813139 . + . Note "Left: Y102F5A" CHROMOSOME_X assembly_tag Clone 11813236 11813239 . + . Note "right end: C40H5" CHROMOSOME_X assembly_tag annotation 11819979 11823985 . + . Note "First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -This region contains 3 different tandem repeat arrays. The first tandem repeat has copies of 27bp. The second tandem repeat has copies of 26bp. The third tandem repeat has copies of 11bp. The region contains false joins and also single clone regions." CHROMOSOME_X assembly_tag Clone 11825447 11825450 . + . Note "left end: C34E11" CHROMOSOME_X assembly_tag Clone 11825447 11825450 . + . Note "left end: left hand end of C34E11" CHROMOSOME_X assembly_tag Finished 11825547 11825550 . + . Note "Right: Y102F5A" CHROMOSOME_X assembly_tag annotation 11830321 11830357 . + . Note "-ve strand missing over bases 4875 to 4911 (36 bp). Terminator present on +ve strand." CHROMOSOME_X assembly_tag annotation 11831090 11831116 . + . Note "-ve strand missing over bases 5655 to 5670. Terminator present on +ve strand" CHROMOSOME_X assembly_tag annotation 11840828 11840904 . + . Note "-ve strand missing across bases 15381 to 15458 (77 bp). Terminator present across +ve strand." CHROMOSOME_X assembly_tag annotation 11843848 11843860 . + . Note "18402 to 18414 (12 bp) not d.s." CHROMOSOME_X assembly_tag annotation 11855951 11855969 . + . Note "bases 305005 - 30523 have no +ve strand terminated on -ve strand" CHROMOSOME_X assembly_tag Clone 11865199 11865202 . + . Note "right end: C34E11" CHROMOSOME_X assembly_tag Clone 11865199 11865202 . + . Note "right end: right hand end of C34E11 no overlap with F54F7" CHROMOSOME_X assembly_tag Clone 11866876 11866879 . + . Note "left end: F54F7" CHROMOSOME_X assembly_tag Clone 11866877 11866880 . + . Note "left end: left hand end of F54F7" CHROMOSOME_X assembly_tag annotation 11873293 11873505 . + . Note "Unique region between inverted repeat elements (6470 to 6630bp). Generally poor quality data and missing d.s. (-) data, but terminators done on all available + reads." CHROMOSOME_X assembly_tag annotation 11887825 11887889 . + . Note "Poor sequence on the -ve strand. Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 11894525 11894535 . + . Note "only 8 T's in the terminator but 9 in the other reads so left as 9." CHROMOSOME_X assembly_tag annotation 11903988 11903988 . + . Note "A single M13 clone has a C in this position. All other clones (6 +/6-) have a G. Edited accordingly." CHROMOSOME_X assembly_tag annotation 11907031 11907107 . + . Note "No -ve strand data over bases 40155 - 40231 (76 bp) caused by run of 32 ATs. Terminated on the +ve strand." CHROMOSOME_X assembly_tag Finished 11909437 11909440 . + . Note "Left: Y62H9A" CHROMOSOME_X assembly_tag Clone 11909537 11909540 . + . Note "right end: F54F7" CHROMOSOME_X assembly_tag Clone 11909537 11909540 . + . Note "right end: right hand end of F54F7" CHROMOSOME_X assembly_tag Alu 11909881 11909884 . + . Note "segment: 2x " CHROMOSOME_X assembly_tag Alu 11909988 11910013 . + . Note "segment: " CHROMOSOME_X assembly_tag oligo 11910130 11910146 . - . Note "serial#=Y62H9.13\ntemplate=st48c8.p1lt \nsequence=CTTGCTTGTAATCCCGC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 11910819 11910844 . + . CHROMOSOME_X assembly_tag DSTM 11912524 11912578 . + . CHROMOSOME_X assembly_tag DSTM 11913384 11913572 . + . CHROMOSOME_X assembly_tag CHAR 11913789 11913850 . + . CHROMOSOME_X assembly_tag DSTM 11913851 11913954 . + . CHROMOSOME_X assembly_tag CHAR 11914726 11914876 . + . CHROMOSOME_X assembly_tag DSTM 11914877 11915268 . + . CHROMOSOME_X assembly_tag CHAR 11915736 11915765 . + . CHROMOSOME_X assembly_tag DSTM 11915766 11916246 . + . CHROMOSOME_X assembly_tag oligo 11917442 11917458 . + . Note "serial#=Y62H9.1\ntemplate=st48h5.q1tU \nsequence=CCAATGATGATCCTAGC\nflags=\n" CHROMOSOME_X assembly_tag CHAR 11917593 11917736 . + . CHROMOSOME_X assembly_tag oligo 11917777 11917798 . - . Note "serial#=Y62H9.8\ntemplate=st50f8.p1U \nsequence=CAGACTGAATTACAAATTGTTC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 11919962 11920116 . + . CHROMOSOME_X assembly_tag CHAR 11920117 11920120 . + . CHROMOSOME_X assembly_tag annotation 11920637 11922483 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[X] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_X assembly_tag CHAR 11922038 11922061 . + . CHROMOSOME_X assembly_tag CHAR 11922063 11922086 . + . CHROMOSOME_X assembly_tag CHAR 11922088 11922111 . + . CHROMOSOME_X assembly_tag CHAR 11922338 11922387 . + . CHROMOSOME_X assembly_tag CHAR 11922388 11922437 . + . CHROMOSOME_X assembly_tag annotation 11922509 11923856 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[X] Tandem repeat\n[ ] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_X assembly_tag repeat 11924756 11924954 . + . CHROMOSOME_X assembly_tag CHAR 11924955 11924971 . + . CHROMOSOME_X assembly_tag oligo 11926850 11926871 . + . Note "serial#=Y62H9.9\ntemplate=st47f2.q1taU \nsequence=CGAAAGACAATAGAAGAAAATC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 11926945 11927041 . + . CHROMOSOME_X assembly_tag DSTM 11927187 11927411 . + . CHROMOSOME_X assembly_tag oligo 11927264 11927282 . - . Note "serial#=Y62H9.4\ntemplate=st51c11.p1U \nsequence=GTGTTCCATTGTGATTATC\nflags=\n" CHROMOSOME_X assembly_tag cosmid 11927340 11927519 . + . Note "vector: " CHROMOSOME_X assembly_tag CHAR 11927412 11927515 . + . CHROMOSOME_X assembly_tag DSTM 11927615 11927914 . + . CHROMOSOME_X assembly_tag DSTM 11928471 11928563 . + . CHROMOSOME_X assembly_tag DSTM 11929562 11929770 . + . CHROMOSOME_X assembly_tag CHAR 11929771 11929902 . + . CHROMOSOME_X assembly_tag DSTM 11930091 11930489 . + . CHROMOSOME_X assembly_tag CHAR 11930490 11931409 . + . CHROMOSOME_X assembly_tag cosmid 11930884 11930943 . + . Note "vector: " CHROMOSOME_X assembly_tag DSTM 11931410 11931995 . + . CHROMOSOME_X assembly_tag oligo 11931914 11931930 . + . Note "serial#=Y62H9.5\ntemplate=st50f9.p1U \nsequence=CGGACAACTGTGTAAAG\nflags=\n" CHROMOSOME_X assembly_tag CHAR 11931996 11932271 . + . CHROMOSOME_X assembly_tag oligo 11932308 11932326 . - . Note "serial#=Y62H9.2\ntemplate=st52e4.q1tU \nsequence=GAAGTTGATACGATGAAAC\nflags=\n" CHROMOSOME_X assembly_tag stop 11933578 11933616 . + . CHROMOSOME_X assembly_tag CHAR 11933720 11933733 . + . Note "Dodgy?" CHROMOSOME_X assembly_tag DSTM 11934050 11934136 . + . CHROMOSOME_X assembly_tag CHAR 11934457 11934480 . + . CHROMOSOME_X assembly_tag DSTM 11934678 11934760 . + . CHROMOSOME_X assembly_tag CHAR 11935232 11935308 . + . CHROMOSOME_X assembly_tag DSTM 11936846 11936898 . + . CHROMOSOME_X assembly_tag CHAR 11936899 11936979 . + . CHROMOSOME_X assembly_tag DSTM 11937192 11937320 . + . CHROMOSOME_X assembly_tag DSTM 11939368 11939379 . + . CHROMOSOME_X assembly_tag DSTM 11940357 11940438 . + . CHROMOSOME_X assembly_tag DSTM 11941954 11942045 . + . CHROMOSOME_X assembly_tag DSTM 11944145 11944213 . + . CHROMOSOME_X assembly_tag oligo 11945196 11945213 . + . Note "serial#=Y62H9.3\ntemplate=st53c3.q1tU \nsequence=TTCTTCACAAGGATAACG\nflags=\n" CHROMOSOME_X assembly_tag CHAR 11945269 11945403 . + . CHROMOSOME_X assembly_tag DSTM 11945404 11945557 . + . CHROMOSOME_X assembly_tag oligo 11945442 11945458 . - . Note "serial#=Y62H9.6\ntemplate=st53e12.p1U \nsequence=ATTTGGACCAGAACGCC\nflags=\n" CHROMOSOME_X assembly_tag CHAR 11945704 11945779 . + . CHROMOSOME_X assembly_tag DSTM 11946785 11946935 . + . CHROMOSOME_X assembly_tag CHAR 11946936 11947222 . + . CHROMOSOME_X assembly_tag DSTM 11948008 11948243 . + . CHROMOSOME_X assembly_tag Alu 11949237 11949447 . + . Note "segment: " CHROMOSOME_X assembly_tag cosmid 11950322 11950335 . + . Note "vector: " CHROMOSOME_X assembly_tag DSTM 11950329 11950393 . + . CHROMOSOME_X assembly_tag CHAR 11950394 11950721 . + . CHROMOSOME_X assembly_tag cosmid 11951013 11951029 . - . Note "vector: " CHROMOSOME_X assembly_tag CHAR 11951255 11951360 . + . CHROMOSOME_X assembly_tag DSTM 11951929 11951965 . + . CHROMOSOME_X assembly_tag DSTM 11951965 11952243 . + . CHROMOSOME_X assembly_tag oligo 11953064 11953086 . + . Note "serial#=Y62H9.7\ntemplate=st49g7.q1tU \nsequence=GAAATTAATGGTGAGATTTCTTC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 11953182 11953631 . + . CHROMOSOME_X assembly_tag DSTM 11953865 11954281 . + . CHROMOSOME_X assembly_tag oligo 11954147 11954168 . + . Note "serial#=Y62H9.10\nsequence=GAAGAATAATCTTGCACTTTAC\nflags=\n" CHROMOSOME_X assembly_tag Alu 11954201 11954202 . - . Note "segment: " CHROMOSOME_X assembly_tag annotation 11954291 11954403 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_X assembly_tag DSTM 11954615 11954818 . + . CHROMOSOME_X assembly_tag oligo 11954675 11954691 . - . Note "serial#=Y62H9.11\nsequence=TGATGAAGGTGCATTCG\nflags=\n" CHROMOSOME_X assembly_tag DSTM 11954818 11955286 . + . CHROMOSOME_X assembly_tag oligo 11955163 11955179 . + . Note "serial#=Y62H9.12\ntemplate=st49b1.p1U \nsequence=AAGCGAATCGTCATGTC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 11955287 11955296 . + . CHROMOSOME_X assembly_tag DSTM 11955297 11955704 . + . CHROMOSOME_X assembly_tag DSTM 11955701 11955702 . - . CHROMOSOME_X assembly_tag CHAR 11955944 11956005 . + . CHROMOSOME_X assembly_tag CHAR 11956007 11956081 . + . CHROMOSOME_X assembly_tag cosmid 11956432 11956450 . + . Note "vector: " CHROMOSOME_X assembly_tag DSTM 11956705 11956728 . + . CHROMOSOME_X assembly_tag Clone 11956729 11956732 . + . Note "left end: F55G7" CHROMOSOME_X assembly_tag Clone 11956729 11956732 . + . Note "left end: Beginning of F55G7" CHROMOSOME_X assembly_tag Finished 11956829 11956832 . - . Note "Right: Y62H9A" CHROMOSOME_X assembly_tag annotation 11978596 11978643 . + . Note "Region of poor d.s. but sequence confirmed by terminator on opposite strand." CHROMOSOME_X assembly_tag Clone 11978990 11978993 . + . Note "left end: Beginning T08D10" CHROMOSOME_X assembly_tag Clone 11978990 11978993 . + . Note "left end: Beginning of T08D10" CHROMOSOME_X assembly_tag Finished 11978990 11978993 . + . Note "Left: " CHROMOSOME_X assembly_tag annotation 11979673 11979673 . + . Note "missing C in this read only 9 + and 3 - do have C in this position" CHROMOSOME_X assembly_tag annotation 11981709 11981709 . + . Note "missing C from this read only 5 + and 4 - do have C in this position" CHROMOSOME_X assembly_tag annotation 11984514 11984514 . + . Note "missing G from this read only 4 + and 4 - do have G in this position" CHROMOSOME_X assembly_tag compression 11985906 11985906 . + . CHROMOSOME_X assembly_tag annotation 11989105 11989105 . + . Note "missing G in this read only 6 + and 7 - do have G in this position" CHROMOSOME_X assembly_tag Clone 11992919 11992922 . + . Note "left end: Beginning of C49F5" CHROMOSOME_X assembly_tag Finished 11992919 11992922 . + . Note "Left: C49F5" CHROMOSOME_X assembly_tag Clone 11992919 11992922 . + . Note "left end: C49F5" CHROMOSOME_X assembly_tag Finished 11993019 11993022 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 12000408 12000411 . + . Note "right end: F55G7 end" CHROMOSOME_X assembly_tag Clone 12008888 12008891 . + . Note "right end: T08D10 end (T08D10 = redundant)" CHROMOSOME_X assembly_tag annotation 12009401 12009710 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is\nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12009711 12009714 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12009715 12009725 . + . Note "Only one clone across this region \nwhere the sequence of the tandem \nrepeats becomes inverted. Evidence \nfrom restriction digest (ECORI, SACI, \nXHOI) indicates there is nothing \nmissing from this assembly. " CHROMOSOME_X assembly_tag annotation 12009726 12010158 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12010159 12010379 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12010380 12010635 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12010636 12010903 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12010904 12011184 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12011185 12011504 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12011505 12011784 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. \n" CHROMOSOME_X assembly_tag annotation 12011785 12012195 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12012196 12012558 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12012559 12012881 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12012882 12013196 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. \n" CHROMOSOME_X assembly_tag annotation 12013197 12013520 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest." CHROMOSOME_X assembly_tag annotation 12013521 12013816 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12013817 12014075 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12014076 12014156 . + . Note "Region consisting of tandem repeats \n224 base pairs long, with some \nsingle-stranded regions and some \nregions covered by one clone only. The\nsize of the region in this assembly is \nverified by restriction digest. " CHROMOSOME_X assembly_tag annotation 12022139 12022143 . + . Note "Sequence of this part of hairpin not\ndouble-stranded and not confirmed by \nterminator." CHROMOSOME_X assembly_tag annotation 12022147 12022152 . + . Note "Sequence of this part of hairpin not \ndouble-stranded and not confirmed by \nterminator." CHROMOSOME_X assembly_tag Finished 12032663 12032666 . + . Note "Left: W06B3" CHROMOSOME_X assembly_tag Clone 12032763 12032766 . + . Note "right end: C49F5" CHROMOSOME_X assembly_tag Clone 12032763 12032766 . + . Note "right end: C49F5 end" CHROMOSOME_X assembly_tag Finished 12032763 12032766 . + . Note "Right: C49F5" CHROMOSOME_X assembly_tag Finished 12052271 12052276 . + . Note "Left: VW06B3R" CHROMOSOME_X assembly_tag Clone 12052371 12052376 . + . Note "right end: W06B3" CHROMOSOME_X assembly_tag Finished 12052371 12052376 . + . Note "Right: W06B3" CHROMOSOME_X assembly_tag Clone 12052371 12052376 . - . Note "right end: W06B3" CHROMOSOME_X assembly_tag Clone 12054257 12054260 . + . Note "left end: B0198" CHROMOSOME_X assembly_tag Clone 12054257 12054260 . + . Note "left end: START OF B0198" CHROMOSOME_X assembly_tag Finished 12054357 12054360 . - . Note "Right: VW06B3R" CHROMOSOME_X assembly_tag annotation 12072127 12072180 . + . Note "NO d.s on +ve strand from 17875 to 17928. Sequence is confirmed on -ve strand by a terminator." CHROMOSOME_X assembly_tag annotation 12075561 12075589 . + . Note "NO d.s (+) from 21309 to 21338. Sequence confirmed by (-) terminator." CHROMOSOME_X assembly_tag annotation 12076108 12076151 . + . Note "NO d.s (+) from 21856 to 21901. Sequence confirmed by (-) terminator." CHROMOSOME_X assembly_tag annotation 12084771 12084833 . + . Note "no +ve read to d.s refer to terminator on -ve strand for confirmation." CHROMOSOME_X assembly_tag Clone 12085434 12085437 . + . Note "left end: Start of C15A7" CHROMOSOME_X assembly_tag Clone 12085434 12085437 . + . Note "left end: left hand end of C15A7" CHROMOSOME_X assembly_tag annotation 12096573 12096674 . + . Note "Missing + d.s. in this region, after run of 19 Cs From 11140 to 11240 (100 bp) Data confirmed by terminators on opposite strand." CHROMOSOME_X assembly_tag annotation 12097167 12097220 . + . Note "Region of poor d.s. (-), caused by run of Gs, from 11730 to 11780 (50bp) Data confirmed by terminator on + strand." CHROMOSOME_X assembly_tag Clone 12112402 12112405 . + . Note "left end: left hand end of W03G11" CHROMOSOME_X assembly_tag Clone 12112402 12112405 . + . Note "left end: left hand end of W03G11" CHROMOSOME_X assembly_tag annotation 12118996 12119012 . + . Note "17 G's. However, some reads show 16 G's" CHROMOSOME_X assembly_tag Clone 12128599 12128602 . + . Note "right end: right hand end of C15A7" CHROMOSOME_X assembly_tag annotation 12131726 12131742 . + . Note "no +ve strand on bases 19325 - 19340 terminator runs across this region on -ve strand (from PCR of cosmid DNA)" CHROMOSOME_X assembly_tag Clone 12143064 12143067 . + . Note "left end: left hand end of T01H10" CHROMOSOME_X assembly_tag Clone 12143064 12143067 . + . Note "left end: Beginning of T01H10" CHROMOSOME_X assembly_tag Clone 12157540 12157547 . + . Note "right end: Right end of W03G11." CHROMOSOME_X assembly_tag annotation 12159848 12159890 . + . Note "Terminator to confirm 43bp scrappy double-stranding." CHROMOSOME_X assembly_tag annotation 12163012 12163133 . + . Note "Area of poor quality d.s. but sequence confirmed by terminators on opposite strand. (Approx. 100bp)" CHROMOSOME_X assembly_tag annotation 12164880 12164922 . + . Note "Terminator to confirm 42 base pairs of poor double stranding." CHROMOSOME_X assembly_tag annotation 12171832 12171868 . + . Note "Terminator to cover 37 bp poor double-stranding." CHROMOSOME_X assembly_tag Clone 12173828 12173831 . + . Note "left end: Beginning of M153." CHROMOSOME_X assembly_tag Finished 12173828 12173831 . + . Note "Left: M153" CHROMOSOME_X assembly_tag Clone 12173828 12173831 . + . Note "left end: Beginning of M153" CHROMOSOME_X assembly_tag Clone 12183476 12183479 . + . Note "right end: End of T01H10." CHROMOSOME_X assembly_tag Clone 12190710 12190713 . + . Note "left end: Left end of F57G12." CHROMOSOME_X assembly_tag Clone 12190710 12190713 . + . Note "left end: Left end of F57G12." CHROMOSOME_X assembly_tag Finished 12190710 12190713 . + . Note "Left: F57G12" CHROMOSOME_X assembly_tag Finished 12190710 12190713 . + . Note "Left: F57G12" CHROMOSOME_X assembly_tag Finished 12190809 12190813 . + . Note "Right: M153" CHROMOSOME_X assembly_tag Finished 12190809 12190813 . + . Note "Right: M153" CHROMOSOME_X assembly_tag annotation 12200243 12200248 . + . Note "Two M13 clones were deleted from this point on, over an inverted repeat region" CHROMOSOME_X assembly_tag annotation 12211330 12211332 . + . Note "Sequence of these 3 bases (after a run of 6 Gs and before a run of 16 Gs) is unclear and we have not been able to establish them with any degree of confidence (most likely either Cs or Gs?dropout?." CHROMOSOME_X assembly_tag Clone 12216204 12216207 . + . Note "right end: Right end of M153" CHROMOSOME_X assembly_tag annotation 12221830 12221830 . + . Note "missing C from a single M13 clone" CHROMOSOME_X assembly_tag Clone 12225215 12225218 . + . Note "right end: Right end of F57G12." CHROMOSOME_X assembly_tag Finished 12225215 12225218 . + . Note "Right: F57G12" CHROMOSOME_X assembly_tag Finished 12233343 12233346 . + . Note "Left: C23H4" CHROMOSOME_X assembly_tag Clone 12233343 12233346 . - . Note "left end: START of C23H4" CHROMOSOME_X assembly_tag Clone 12256764 12256767 . - . Note "right end: END of W07A6" CHROMOSOME_X assembly_tag Clone 12265010 12265013 . + . Note "left end: START OF E01G6" CHROMOSOME_X assembly_tag Finished 12275969 12275972 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 12276069 12276072 . + . Note "right end: END OF C23H4" CHROMOSOME_X assembly_tag Clone 12276069 12276072 . + . Note "right end: END of C23H4" CHROMOSOME_X assembly_tag Finished 12276069 12276072 . + . Note "Right: C23H4" CHROMOSOME_X assembly_tag Finished 12301858 12301861 . + . Note "Left: H19J13" CHROMOSOME_X assembly_tag Clone 12301952 12301955 . + . Note "right end: E01G6" CHROMOSOME_X assembly_tag Clone 12301952 12301955 . + . Note "right end: END OF E01G6" CHROMOSOME_X assembly_tag Finished 12301952 12301955 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 12308518 12308521 . + . Note "left end: C04B4" CHROMOSOME_X assembly_tag Clone 12308518 12308521 . + . Note "left end: Beginning of C04B4 NB : NO OVERLAP WITH E01G6" CHROMOSOME_X assembly_tag Finished 12308518 12308521 . + . Note "Left: C04B4" CHROMOSOME_X assembly_tag Finished 12308618 12308621 . + . Note "Right: H19J13" CHROMOSOME_X assembly_tag Clone 12327995 12328002 . + . Note "left end: BEGINNING OF WO6D11 (= NOTI SITE) NOW REDUNDANT!!" CHROMOSOME_X assembly_tag Finished 12327997 12328000 . + . Note "Left: W06D11" CHROMOSOME_X assembly_tag Clone 12327997 12328000 . + . Note "left end: BEGINNING OF W06D11" CHROMOSOME_X assembly_tag Finished 12328097 12328101 . + . Note "Right: C04B4" CHROMOSOME_X assembly_tag Finished 12328097 12328101 . + . Note "Right: C04B4" CHROMOSOME_X assembly_tag annotation 12339499 12339499 . + . Note "T missing from this read. 15 other reads say T present." CHROMOSOME_X assembly_tag Clone 12340048 12340051 . + . Note "left end: Beginning of F17A2" CHROMOSOME_X assembly_tag Clone 12340048 12340051 . + . Note "left end: Beginning of F17A2" CHROMOSOME_X assembly_tag Finished 12340048 12340051 . + . Note "Left: F17A2" CHROMOSOME_X assembly_tag Finished 12340147 12340150 . + . Note "Right: W06D11" CHROMOSOME_X assembly_tag Clone 12341738 12341741 . + . Note "right end: End of C04B4" CHROMOSOME_X assembly_tag annotation 12344746 12344746 . + . Note "C missing from this clone, but 11 other clones have C present" CHROMOSOME_X assembly_tag annotation 12348813 12348813 . + . Note "G missing from this read, but 29 other reads say G" CHROMOSOME_X assembly_tag annotation 12350295 12350295 . + . Note "G missing from this clone, but 25 other clones have G present" CHROMOSOME_X assembly_tag Clone 12360536 12360539 . + . Note "left end: BEGINNING OF W06D11" CHROMOSOME_X assembly_tag Clone 12360536 12360539 . + . Note "right end: END OF W06D11" CHROMOSOME_X assembly_tag Finished 12374345 12374348 . + . Note "Left: F42F12" CHROMOSOME_X assembly_tag Clone 12374345 12374348 . + . Note "left end: BEGINNING OF F42F12" CHROMOSOME_X assembly_tag Clone 12374345 12374348 . + . Note "left end: BEGINNING OF F42F12" CHROMOSOME_X assembly_tag Finished 12374445 12374448 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 12377316 12377319 . + . Note "right end: END OF F17A2" CHROMOSOME_X assembly_tag stop 12393750 12393752 . + . CHROMOSOME_X assembly_tag Clone 12395918 12395921 . + . Note "left end: Beginning of F19H6" CHROMOSOME_X assembly_tag Clone 12395918 12395921 . + . Note "left end: left hand end of F19H6" CHROMOSOME_X assembly_tag Clone 12395918 12395921 . + . Note "left end: BEGINNING OF F19H6" CHROMOSOME_X assembly_tag Finished 12396018 12396021 . + . Note "Right: F42F12" CHROMOSOME_X assembly_tag annotation 12405937 12405952 . + . Note "no + strand bases 10020 - 10034 (16b) but terminator on the -ve strand " CHROMOSOME_X assembly_tag Clone 12411449 12411452 . + . Note "right end: End of F42F12" CHROMOSOME_X assembly_tag annotation 12414204 12414273 . + . Note "Approx 70 bp missing - d.s. (caused by sequence dying after run of Gs) but available strand (+) is terminated." CHROMOSOME_X assembly_tag annotation 12414255 12414275 . + . Note "Run of 21 Gs : fairly confident of the number. Some + reads go through the run but no - reads" CHROMOSOME_X assembly_tag annotation 12414276 12414329 . + . Note "Region of very poor quality d.s. (+) following run of 21 Gs. Terminator on both available strands but of poor quality (approx. 50 bp)." CHROMOSOME_X assembly_tag Clone 12425430 12425433 . + . Note "left end: Beginning of F17E5" CHROMOSOME_X assembly_tag Clone 12425430 12425433 . + . Note "left end: left hand end of F17E5" CHROMOSOME_X assembly_tag Clone 12436932 12436935 . + . Note "right end: End of F19H6" CHROMOSOME_X assembly_tag Clone 12436932 12436935 . + . Note "right end: right hand end of F19H6" CHROMOSOME_X assembly_tag annotation 12448361 12448409 . + . Note "Bases 22932 to 22980 (48bp) not d.s. but region covered by terminators" CHROMOSOME_X assembly_tag annotation 12448426 12448453 . + . Note "Walks leading into run of G's (looks like 17 G's) have ambiguous data over bases 22997 to 23007 but base counting looks correct" CHROMOSOME_X assembly_tag annotation 12448481 12448525 . + . Note "Bases 23052 to 23096 (44bp) not d.s. but data confirmed with terminators" CHROMOSOME_X assembly_tag Clone 12455879 12455882 . + . Note "left end: left hand end of T24D3" CHROMOSOME_X assembly_tag Clone 12455879 12455882 . + . Note "left end: left hand end of T24D3" CHROMOSOME_X assembly_tag Clone 12463299 12463302 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 12468252 12468290 . + . Note "bases 12374 - 12412 (38 bp) has no +ve strand terminated on -ve strand" CHROMOSOME_X assembly_tag Clone 12472122 12472125 . + . Note "left end: left hand end of T18D3" CHROMOSOME_X assembly_tag Clone 12472122 12472125 . + . Note "left end: left hand end of T18D3" CHROMOSOME_X assembly_tag annotation 12482098 12482122 . + . Note "No good +ve strand data bases 9976 - 10000. Terminated on the -ve strand. Region has tandem repeat element starting with the motif GACCT. Whole region of repeat is from 9834-10016. The repeat may be causing the messiness of the +ve walk with oligo.11" CHROMOSOME_X assembly_tag Clone 12491456 12491459 . + . Note "right end: right hand end of T24D3" CHROMOSOME_X assembly_tag annotation 12493773 12493838 . + . Note "Poor +ve strand data over bases 21651 - 21715. Terminated on the -ve strand" CHROMOSOME_X assembly_tag Clone 12504623 12504626 . + . Note "left end: left hand end of F45E6" CHROMOSOME_X assembly_tag Clone 12504623 12504626 . + . Note "left end: left hand end of F45E6" CHROMOSOME_X assembly_tag annotation 12506713 12506718 . + . Note "Poor quality data on +ve strand bases 2091 - 2096. Terminator on the -ve strand." CHROMOSOME_X assembly_tag Clone 12509474 12509477 . + . Note "right end: end of T18D3" CHROMOSOME_X assembly_tag annotation 12515091 12515131 . + . Note "Poor -ve strand over bases 10468 - 10508 (50bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12517782 12517822 . + . Note "No -ve strand data over bases 13159 - 13199 (40bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12518619 12518664 . + . Note "Poor -ve strand data over bases 13996 - 14040 (45 bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12522029 12522087 . + . Note "?No +ve strand data over bases 17416 - 17464 (50bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12529461 12529481 . + . Note "missing + d.s. terminated on -" CHROMOSOME_X assembly_tag annotation 12529480 12529530 . + . Note "No +ve strand data over bases 24837 - 24907 (70bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12529873 12529905 . + . Note "Poor + d.s. from 25255 to 25280 bp (25 bp) but terminated on _ strnd" CHROMOSOME_X assembly_tag annotation 12530049 12530100 . + . Note "No +ve strand data over bases 25426 - 25477(50 bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12531317 12531394 . + . Note "No -ve strand data over bases 26694 - 26812 (120bp). Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12531395 12531434 . + . Note "No -ve strabd data over bases 26694 - 26812. Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12536924 12537078 . + . Note "F45E6 tandem repeats : Repeat region starts at position 32,300 and ends at position 32,455. 8 copies present in cosmid (19 and 20mers) CACGAAAAAATAGATTGTTA 1 CACGAAAAAATAGATTGTTA 2 CACGAAAAATAGATTGTTA 3 CACGAAAAATAGATTGTTA 4 CACGAAAAAATAGATTGGCA 5 TACGAAAAATAGATTGTTA 6 CACGAAAAATAGATTGTTA 7 CACGAAAAATAGGATGTTA 8a PCR using oligos .11 and .19 confirm cosmid fragment size as about 380 bp. PCR using the same oligos with genomic DNA gave a much larger fragment (about 1.6kb) suggesting that 60 to 70 copies of the repeat have been deleted from the cosmid (about 1.2kb deleted). There was a very weak band of the right size in the cosmid PCR. Another 10 copies of the repeat can be found in a minor contig (810) in the database. These are : CACGAAAAATAGATTGTTA 8b CACGAAAAAATAGATTGGCA 9 TACGAAAAATAGATTGTTA 10 CACGAAAAAATAGATTGTTA 11 CACGAAAAATAGATTGTTA 12 CACGAAAAATAGATTGTTA 13 CACGAAAAAATAGATTGGCA 14 TACGAAAAATAGATTGTTA 15 CACGAAAAATAGATTGTTA 16 CACGAAAAATAGATTGTTA 17 CACGAAAAATAGGATGTTA 18 (same as 8a)" CHROMOSOME_X assembly_tag annotation 12537810 12537837 . + . Note "no -ve strand data on bases 33380 - 33407 (30bp). Terminated on the +ve strand" CHROMOSOME_X assembly_tag Finished 12538562 12538565 . - . Note "Left: H20J18" CHROMOSOME_X assembly_tag Clone 12538566 12538569 . + . Note "left end: left hand end of C03C5" CHROMOSOME_X assembly_tag Clone 12538662 12538665 . - . Note "right end: F45E6" CHROMOSOME_X assembly_tag oligo 12538799 12538816 . + . Note "serial#=H20J18.4\ntemplate=sz59f6\nsequence=CATACATTGGACAGTCAG\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12538894 12538989 . - . CHROMOSOME_X assembly_tag oligo 12539055 12539074 . - . Note "serial#=H20J18.2\ntemplate=sz93b11\nsequence=GAATTTCAAACAAGCCATAC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12539869 12539956 . - . CHROMOSOME_X assembly_tag DSTM 12540341 12540341 . + . CHROMOSOME_X assembly_tag DSTM 12542053 12542350 . + . CHROMOSOME_X assembly_tag oligo 12542299 12542316 . + . Note "serial#=H20J18.3\ntemplate=\nsequence=TTGCGTTCACAAATTGAG\nflags=\n" CHROMOSOME_X assembly_tag annotation 12542413 12542554 . + . Note "First select a Feature -\n[ ] Unsure\n[X] Misc_feature\nThen select the text for the note(s) -\n[ ] Tandem repeat\n[X] Single clone region\n[ ] Forced join\n[ ] Other\nAdd a comment here -\n" CHROMOSOME_X assembly_tag cosmid 12542555 12542563 . + . Note "vector: " CHROMOSOME_X assembly_tag oligo 12542643 12542659 . - . Note "serial#=H20J18.1\ntemplate=\nsequence=CAACATCTGCAAGCAGC\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12542607 12542741 . - . CHROMOSOME_X assembly_tag DSTM 12543846 12544093 . - . CHROMOSOME_X assembly_tag oligo 12545502 12545519 . + . Note "serial#=H20J18.5\ntemplate=\nsequence=TTTTTATGGCACTGTTGG\nflags=\n" CHROMOSOME_X assembly_tag DSTM 12547252 12547362 . - . CHROMOSOME_X assembly_tag Finished 12547363 12547366 . + . Note "Left: C16D6" CHROMOSOME_X assembly_tag Clone 12547363 12547366 . + . Note "left end: Beginning of C16D6" CHROMOSOME_X assembly_tag Clone 12547363 12547366 . - . Note "left end: C16D6" CHROMOSOME_X assembly_tag Finished 12547463 12547466 . - . Note "Right: H20J18" CHROMOSOME_X assembly_tag Clone 12577710 12577715 . + . Note "left end: BEGINNING OF R01H5" CHROMOSOME_X assembly_tag Clone 12577710 12577717 . - . Note "left end: Beginning of R01H5" CHROMOSOME_X assembly_tag Finished 12577810 12577813 . + . Note "Right: C16D6" CHROMOSOME_X assembly_tag Clone 12584516 12584519 . + . Note "right end: END OF C03C5" CHROMOSOME_X assembly_tag annotation 12595239 12595274 . + . Note "Missing - d.s. from bases 17533 to 17568 bp (approx 35 bp) due to run of Cs. Terminated on available + strand" CHROMOSOME_X assembly_tag annotation 12595272 12595273 . + . CHROMOSOME_X assembly_tag annotation 12595274 12595290 . + . Note "Most likely 19 Cs but difficult to be certain. Neither sequenase dye primers nor Taq terminators got through the run in either direction." CHROMOSOME_X assembly_tag annotation 12595295 12595345 . + . Note "Missing + d.s. from about 17580 to 17640 bp (60bp) due to run of Cs. Terminated on available - strand." CHROMOSOME_X assembly_tag annotation 12596868 12596898 . + . Note "No - d.s. from bases 19155 to 19185 (approx 30 bp). Confirmed by terminator on +" CHROMOSOME_X assembly_tag Clone 12600497 12600500 . + . Note "left end: BEGINNING OF T24D5" CHROMOSOME_X assembly_tag Finished 12600497 12600500 . + . Note "Left: T24D5" CHROMOSOME_X assembly_tag Clone 12600497 12600500 . + . Note "left end: Start of T24D5" CHROMOSOME_X assembly_tag annotation 12612297 12612321 . + . Note "A number of M13 clones were deleted over this region of tandem and inverted repeats. Restriction digest confirms assembly." CHROMOSOME_X assembly_tag annotation 12612863 12612866 . + . Note "4 bp not double-stranded and no terminator" CHROMOSOME_X assembly_tag Clone 12619389 12619394 . + . Note "right end: END OF R01H5" CHROMOSOME_X assembly_tag Clone 12638057 12638062 . + . Note "left end: START OF R09A8" CHROMOSOME_X assembly_tag Clone 12638057 12638062 . + . Note "left end: START OF R09A8" CHROMOSOME_X assembly_tag Finished 12638057 12638062 . + . Note "Left: R09A8" CHROMOSOME_X assembly_tag Finished 12638159 12638162 . + . Note "Right: T24D5" CHROMOSOME_X assembly_tag Clone 12639010 12639013 . + . Note "right end: END OF T24D5" CHROMOSOME_X assembly_tag Finished 12675098 12675101 . + . Note "Left: H36L18" CHROMOSOME_X assembly_tag Clone 12675196 12675201 . + . Note "right end: END OF R09A8" CHROMOSOME_X assembly_tag Clone 12675196 12675201 . + . Note "right end: R09A8" CHROMOSOME_X assembly_tag Finished 12675196 12675201 . + . Note "Right: R09A8" CHROMOSOME_X assembly_tag annotation 12679875 12679910 . + . Note "read 105 has 18 AT repeats but all \nother reads have only 17 copies.\nEdited to 18 copies." CHROMOSOME_X assembly_tag Clone 12689264 12689267 . + . Note "left end: ?left hand end of C02B4" CHROMOSOME_X assembly_tag Clone 12689264 12689267 . + . Note "left end: C02B4" CHROMOSOME_X assembly_tag Finished 12689364 12689367 . + . Note "Right: H36L18" CHROMOSOME_X assembly_tag annotation 12695313 12695334 . + . Note "-ve strand missing over bases 6051 - 6072. Terminated on the +ve strand." CHROMOSOME_X assembly_tag annotation 12700829 12700906 . + . Note "no -ve strand data over bases 11566 - 11644 (approx 80bp). Terminated on the -ve strand." CHROMOSOME_X assembly_tag Clone 12714997 12715000 . + . Note "left end: left hand end of T07C5" CHROMOSOME_X assembly_tag Clone 12714997 12715000 . + . Note "left end: left hand end of T07C5" CHROMOSOME_X assembly_tag annotation 12722926 12722942 . + . Note "Probably 17 Cs" CHROMOSOME_X assembly_tag Clone 12733704 12733707 . + . Note "right end: right hand end of C02B4" CHROMOSOME_X assembly_tag annotation 12734591 12734607 . + . Note "bases 19595 - 19611: poor -ve strand but has +ve terminator accross the region" CHROMOSOME_X assembly_tag Clone 12739665 12739668 . + . Note "left end: left hand end of F16H9" CHROMOSOME_X assembly_tag Clone 12739665 12739668 . + . Note "left end: beginning of F16H9" CHROMOSOME_X assembly_tag Clone 12749438 12749441 . + . Note "right end: end of T07C5" CHROMOSOME_X assembly_tag annotation 12759419 12759427 . + . Note "this read has 9 T's , though the majority read 8 T's" CHROMOSOME_X assembly_tag Clone 12761286 12761289 . + . Note "left end: beginning of F22E10" CHROMOSOME_X assembly_tag Clone 12761286 12761289 . + . Note "left end: Beginning of F22E10" CHROMOSOME_X assembly_tag Finished 12761286 12761289 . + . Note "Left: F22E10" CHROMOSOME_X assembly_tag annotation 12766943 12766943 . + . Note "A single M13 clone had a C in this position. All other reads (5 - and 5 +) have a T (consensus)." CHROMOSOME_X assembly_tag annotation 12768932 12768934 . + . Note "These 3 bases (gaa) missing from a single M13 clone. Region well-covered by other clones (>18 different M13s)" CHROMOSOME_X assembly_tag Clone 12779180 12779183 . + . Note "right end: END of F16H9" CHROMOSOME_X assembly_tag annotation 12792281 12792384 . + . Note "Dinucleotide repeat (TC) from 30996 bp to 31099 bp (approx 51 copies). Restriction digest (using HindIII) confirmed the size across this region." CHROMOSOME_X assembly_tag Clone 12798709 12798712 . + . Note "left end: Start of T22H6" CHROMOSOME_X assembly_tag Clone 12798709 12798712 . + . Note "left end: left hand end of T22H6" CHROMOSOME_X assembly_tag Finished 12798809 12798812 . + . Note "Right: F22E10" CHROMOSOME_X assembly_tag annotation 12798818 12798895 . + . Note "+ve strand data missing over bases 109 - 242 (130bp). Terminated on the -ve strand" CHROMOSOME_X assembly_tag annotation 12798896 12798947 . + . Note "+ve strand data missing over bases 109 - 242. Terminated on the -ve strand." CHROMOSOME_X assembly_tag annotation 12798948 12798950 . + . CHROMOSOME_X assembly_tag annotation 12823986 12824009 . + . Note "No =ve strand data over bases 25318 - 25341. Terminated on the -ve strand." CHROMOSOME_X assembly_tag Clone 12838301 12838304 . + . Note "left end: left hand end of C52G5" CHROMOSOME_X assembly_tag Clone 12838301 12838304 . + . Note "left end: left hand end of C52G5" CHROMOSOME_X assembly_tag Finished 12838301 12838304 . + . Note "Left: C52G5" CHROMOSOME_X assembly_tag Clone 12841786 12841789 . + . Note "right end: right hand end of T22H6" CHROMOSOME_X assembly_tag annotation 12876728 12876891 . + . Note "Very poor data from 38430 to 38590 bp (about 160bp) in region of an inverted repeat (approx 160bp each element and 50 bp unique loop) from about 38250 to 38650 bp. There are likely to be inaccuracies in the sequence of this region." CHROMOSOME_X assembly_tag Clone 12881039 12881042 . + . Note "left end: left hand end of T14G8" CHROMOSOME_X assembly_tag Clone 12881039 12881042 . + . Note "left end: Left end of T14G8." CHROMOSOME_X assembly_tag Finished 12881139 12881142 . + . Note "Right: C52G5" CHROMOSOME_X assembly_tag Clone 12882435 12882438 . + . Note "right end: Right end of C52G5." CHROMOSOME_X assembly_tag annotation 12889934 12890015 . + . Note "This region is covered by single clones only due to an inverted repeat. Cosmid&genomic PCR (and sequence) has confirmed this region." CHROMOSOME_X assembly_tag annotation 12905383 12905383 . + . Note "Missing base (G) from a single M13 clone (before and after termination) All other reads (7) have G present." CHROMOSOME_X assembly_tag Clone 12908913 12908916 . + . Note "left end: Left end of K02A4." CHROMOSOME_X assembly_tag Clone 12908913 12908916 . + . Note "left end: Beginning of K02A4" CHROMOSOME_X assembly_tag Clone 12914427 12914430 . + . Note "right end: right hand end of T14G8" CHROMOSOME_X assembly_tag Clone 12941360 12941363 . + . Note "left end: ?left hand end of C34E7" CHROMOSOME_X assembly_tag Clone 12941360 12941363 . + . Note "left end: Beginning of C34E7" CHROMOSOME_X assembly_tag Clone 12948147 12948150 . + . Note "right end: End of K02A4" CHROMOSOME_X assembly_tag Clone 12968267 12968270 . + . Note "left end: Beginning of C05E7" CHROMOSOME_X assembly_tag Clone 12968267 12968270 . + . Note "left end: BEGINNING OF C05E7" CHROMOSOME_X assembly_tag annotation 12974364 12974364 . + . Note "Missing C from one M13 clone only. All others have C (5 + reads and 2 - reads)." CHROMOSOME_X assembly_tag Clone 12982566 12982569 . + . Note "right end: END OF C34E7" CHROMOSOME_X assembly_tag Finished 13008453 13008456 . + . Note "Left: VF11C1L" CHROMOSOME_X assembly_tag Clone 13008549 13008552 . + . Note "right end: C05E7" CHROMOSOME_X assembly_tag Clone 13008549 13008552 . + . Note "right end: END OF C05E7" CHROMOSOME_X assembly_tag cosmid 13011746 13011746 . + . Note "vector: " CHROMOSOME_X assembly_tag repeat 13011746 13011746 . + . Note "Repeats with contig zi23d9.s1, offset 195\n" CHROMOSOME_X assembly_tag cosmid 13011746 13011747 . + . Note "vector: " CHROMOSOME_X assembly_tag Clone 13011746 13011749 . - . Note "left end: F11C1" CHROMOSOME_X assembly_tag Finished 13011746 13011749 . - . Note "Left: F11C1" CHROMOSOME_X assembly_tag Clone 13011746 13011749 . - . Note "left end: F11C1" CHROMOSOME_X assembly_tag Finished 13011846 13011849 . - . Note "Right: VF11C1L" CHROMOSOME_X assembly_tag repeat 13013804 13013863 . - . Note "Repeats with contig zi19g11.s1, offset 82\n" CHROMOSOME_X assembly_tag compression 13014106 13014118 . + . CHROMOSOME_X assembly_tag oligo 13015921 13015940 . - . Note "serial#=\ntemplate=zi20f9.s1 \nsequence=GTTTCCATCTAAAAATTGCC\nflags=\nF11C1.1" CHROMOSOME_X assembly_tag compression 13016919 13016929 . + . CHROMOSOME_X assembly_tag compression 13017013 13017028 . + . CHROMOSOME_X assembly_tag repeat 13017340 13017402 . - . CHROMOSOME_X assembly_tag repeat 13017280 13017407 . - . CHROMOSOME_X assembly_tag oligo 13017586 13017604 . + . Note "serial#=\ntemplate=zi11h12.s1 \nsequence=GAACTCTTTTTCTTTCCAG\nflags=\nF11.1" CHROMOSOME_X assembly_tag repeat 13019081 13019222 . - . CHROMOSOME_X assembly_tag repeat 13019081 13019286 . - . CHROMOSOME_X assembly_tag compression 13020325 13020331 . + . CHROMOSOME_X assembly_tag annotation 13020446 13020494 . - . Note "no +ve strand terminated -ve." CHROMOSOME_X assembly_tag compression 13021305 13021315 . + . CHROMOSOME_X assembly_tag resolved 13021392 13021398 . + . Note "compression: " CHROMOSOME_X assembly_tag compression 13021392 13021398 . + . Note "confirm" CHROMOSOME_X assembly_tag compression 13022831 13022837 . + . CHROMOSOME_X assembly_tag compression 13022844 13022851 . + . CHROMOSOME_X assembly_tag compression 13023116 13023120 . + . CHROMOSOME_X assembly_tag compression 13023224 13023232 . + . CHROMOSOME_X assembly_tag compression 13023634 13023649 . + . CHROMOSOME_X assembly_tag compression 13024079 13024085 . + . CHROMOSOME_X assembly_tag compression 13024739 13024745 . + . CHROMOSOME_X assembly_tag compression 13025038 13025044 . + . CHROMOSOME_X assembly_tag compression 13025216 13025223 . + . CHROMOSOME_X assembly_tag oligo 13025302 13025318 . + . Note "serial#=\ntemplate=zi18g3.s1 \nsequence=CACTCGTCACACTCATC\nflags=\nf11.2" CHROMOSOME_X assembly_tag compression 13025455 13025461 . + . CHROMOSOME_X assembly_tag oligo 13025471 13025488 . + . Note "serial#=\nsequence=CTTTTCAACCGCTTTAAC\nflags=\nf11.3" CHROMOSOME_X assembly_tag oligo 13025687 13025709 . + . Note "serial#=\nsequence=GTATTTCAGGTAAAAAATACAGG\nflags=\nF11.4" CHROMOSOME_X assembly_tag compression 13025783 13025788 . + . CHROMOSOME_X assembly_tag oligo 13025857 13025874 . + . Note "serial#=\nsequence=CTATCGGAAGTGTTAGTG\nflags=\nf11.5" CHROMOSOME_X assembly_tag oligo 13026039 13026057 . + . Note "serial#=\nsequence=CTTGTCTTGAGATATTTGG\nflags=\nf11.6" CHROMOSOME_X assembly_tag oligo 13026752 13026769 . - . Note "serial#=\ntemplate=zi17g9.s1 \nsequence=AAGTTTTCAGAAACTCGC\nflags=\nF11C1.2" CHROMOSOME_X assembly_tag oligo 13026829 13026845 . + . Note "serial#=\ntemplate=zi10a2.t1 \nsequence=CGTTCCGAAGCAGATTC\nflags=\nf11.7" CHROMOSOME_X assembly_tag oligo 13026974 13026991 . + . Note "serial#=\ntemplate=zi18g3.f7a \nsequence=GTCAACTTCAAGACCAAG\nflags=\nF11C1.3" CHROMOSOME_X assembly_tag oligo 13027797 13027816 . - . Note "serial#=\ntemplate=zi18h7.s1 \nsequence=CATCTCTTTCCATAATAGTC\nflags=\nF11C1.4" CHROMOSOME_X assembly_tag compression 13028111 13028121 . + . CHROMOSOME_X assembly_tag compression 13028390 13028402 . + . CHROMOSOME_X assembly_tag annotation 13028611 13028640 . - . Note "no +ve strand terminated -ve." CHROMOSOME_X assembly_tag annotation 13028641 13028677 . - . Note "no +ve strand terminated -ve." CHROMOSOME_X assembly_tag compression 13029140 13029149 . + . CHROMOSOME_X assembly_tag compression 13029549 13029563 . + . CHROMOSOME_X assembly_tag compression 13029713 13029722 . + . CHROMOSOME_X assembly_tag compression 13030194 13030201 . + . CHROMOSOME_X assembly_tag repeat 13032974 13033084 . - . CHROMOSOME_X assembly_tag compression 13033342 13033355 . + . CHROMOSOME_X assembly_tag compression 13034172 13034189 . + . CHROMOSOME_X assembly_tag compression 13034349 13034361 . + . CHROMOSOME_X assembly_tag oligo 13034761 13034781 . + . Note "serial#=\ntemplate=zi21d5.s1 \nsequence=CATCGGTAAATTCTCAAAAAG\nflags=\nF11C1.5" CHROMOSOME_X assembly_tag compression 13034904 13034916 . + . CHROMOSOME_X assembly_tag annotation 13035339 13035352 . + . Note "no +ve strand but terminated -." CHROMOSOME_X assembly_tag compression 13035498 13035508 . + . CHROMOSOME_X assembly_tag compression 13035630 13035639 . + . CHROMOSOME_X assembly_tag compression 13035826 13035836 . + . CHROMOSOME_X assembly_tag compression 13037470 13037478 . + . CHROMOSOME_X assembly_tag compression 13037681 13037689 . + . CHROMOSOME_X assembly_tag oligo 13038528 13038545 . + . Note "serial#=\ntemplate=zi20d3.s1 \nsequence=TCGATTGAGAAACTTACG\nflags=\nF11.8" CHROMOSOME_X assembly_tag compression 13038650 13038656 . + . CHROMOSOME_X assembly_tag compression 13038753 13038765 . + . CHROMOSOME_X assembly_tag oligo 13038965 13038982 . + . Note "serial#=\ntemplate=zi21g11.s1 \nsequence=GAAGCGTCGTAATAGTTC\nflags=\nf11.9" CHROMOSOME_X assembly_tag oligo 13039090 13039107 . + . Note "serial#=\ntemplate=zi21g11.s1 \nsequence=CATGATGGTTATCGTTGG\nflags=\nf11.10" CHROMOSOME_X assembly_tag compression 13040124 13040143 . + . CHROMOSOME_X assembly_tag compression 13040345 13040352 . + . CHROMOSOME_X assembly_tag compression 13040478 13040487 . + . CHROMOSOME_X assembly_tag oligo 13040519 13040535 . + . Note "serial#=\ntemplate=zi19a12.s1 \nsequence=GCAATTTTTCGGTTCCC\nflags=\nf11.11" CHROMOSOME_X assembly_tag compression 13040564 13040571 . + . CHROMOSOME_X assembly_tag oligo 13040610 13040631 . + . Note "serial#=\ntemplate=zi19a12.s1 \nsequence=CGAAAATAAGTTGATGAAAACGf11.12\nflags=\n" CHROMOSOME_X assembly_tag oligo 13040794 13040811 . - . Note "serial#=\ntemplate=zh14f9.s1 \nsequence=AGAGAAAGATATGGAGTG\nflags=\nF11C1.6" CHROMOSOME_X assembly_tag oligo 13040869 13040886 . - . Note "serial#=\ntemplate=zi14f9.s1l \nsequence=AAGAAAATTTGCGTTGGC\nflags=\nf11.13" CHROMOSOME_X assembly_tag compression 13041130 13041133 . + . CHROMOSOME_X assembly_tag compression 13041661 13041668 . + . CHROMOSOME_X assembly_tag comment 13041906 13041919 . + . Note "?terminate" CHROMOSOME_X assembly_tag compression 13042425 13042435 . + . CHROMOSOME_X assembly_tag compression 13042442 13042459 . + . CHROMOSOME_X assembly_tag compression 13042509 13042522 . + . CHROMOSOME_X assembly_tag comment 13042552 13042560 . + . Note "?terminate" CHROMOSOME_X assembly_tag compression 13042757 13042772 . + . CHROMOSOME_X assembly_tag compression 13042820 13042831 . + . CHROMOSOME_X assembly_tag compression 13043326 13043336 . + . CHROMOSOME_X assembly_tag compression 13043767 13043781 . + . CHROMOSOME_X assembly_tag compression 13043807 13043811 . + . CHROMOSOME_X assembly_tag annotation 13044203 13044266 . - . Note "no -ve strand terminated +ve." CHROMOSOME_X assembly_tag compression 13044698 13044704 . + . Note "check" CHROMOSOME_X assembly_tag annotation 13044815 13044861 . - . Note "no -ve strand terminated +ve." CHROMOSOME_X assembly_tag annotation 13045103 13045116 . - . Note "no -ve strand terminated +ve." CHROMOSOME_X assembly_tag oligo 13045276 13045293 . - . Note "serial#=\ntemplate=zi11g3.s1 \nsequence=TGAAGACAAGAAAAAGCG\nflags=\nf11.14" CHROMOSOME_X assembly_tag compression 13045390 13045397 . + . CHROMOSOME_X assembly_tag oligo 13045979 13045996 . + . Note "serial#=\ntemplate=zi13c3.s1 \nsequence=ACCAAATGATTCTGTTGC\nflags=\nf11.17" CHROMOSOME_X assembly_tag oligo 13045996 13046012 . - . Note "serial#=\ntemplate=zi13d7.s1 \nsequence=GTTGTCCACGATGTTTG\nflags=\nf11.16" CHROMOSOME_X assembly_tag annotation 13046152 13046171 . - . CHROMOSOME_X assembly_tag oligo 13046176 13046193 . - . Note "serial#=\ntemplate=zi13d7.s1 \nsequence=TTGGAAGTTGATTGACTC\nflags=\nF11C1.7" CHROMOSOME_X assembly_tag annotation 13046171 13046209 . - . Note "NO +ve so terminated _ve." CHROMOSOME_X assembly_tag oligo 13046271 13046288 . - . Note "serial#=\ntemplate=zi13d7.s1 \nsequence=CGAGATAGATGAGTCAAG\n\nf11.15\nflags=\n" CHROMOSOME_X assembly_tag compression 13046337 13046347 . + . CHROMOSOME_X assembly_tag oligo 13046669 13046685 . - . Note "serial#=\nsequence=GGTCAAAAAGGGCTAAG\nflags=\nf11.20" CHROMOSOME_X assembly_tag annotation 13046766 13046800 . - . CHROMOSOME_X assembly_tag oligo 13046783 13046800 . - . CHROMOSOME_X assembly_tag annotation 13046801 13046877 . - . CHROMOSOME_X assembly_tag annotation 13046878 13046956 . - . Note "NO +ve so terminated -ve." CHROMOSOME_X assembly_tag oligo 13046987 13047006 . - . Note "serial#=\ntemplate=zi20e11.s1 \nsequence=CTATCCAACCAGAATAAATG\nflags=\nf11.18" CHROMOSOME_X assembly_tag compression 13047067 13047076 . + . CHROMOSOME_X assembly_tag compression 13047346 13047353 . + . CHROMOSOME_X assembly_tag repeat 13048085 13048155 . - . CHROMOSOME_X assembly_tag repeat 13049566 13049657 . - . CHROMOSOME_X assembly_tag compression 13051227 13051232 . + . CHROMOSOME_X assembly_tag oligo 13051242 13051260 . - . Note "serial#=\ntemplate=zi20h2.s1 \nsequence=CAGTTTTTTCTGTTAGTGC\nflags=\nf11.21" CHROMOSOME_X assembly_tag Finished 13052494 13052497 . + . Note "Left: C53C7" CHROMOSOME_X assembly_tag compression 13052550 13052556 . + . CHROMOSOME_X assembly_tag cosmid 13052596 13052597 . + . Note "vector: " CHROMOSOME_X assembly_tag Clone 13052594 13052597 . - . Note "right end: F11C1" CHROMOSOME_X assembly_tag Finished 13052594 13052597 . - . Note "Right: F11C1" CHROMOSOME_X assembly_tag Clone 13052594 13052597 . - . Note "right end: F11C1" CHROMOSOME_X assembly_tag cosmid 13052595 13052597 . - . Note "vector: " CHROMOSOME_X assembly_tag Clone 13086020 13086023 . + . Note "left end: Start of K03A11" CHROMOSOME_X assembly_tag Clone 13086020 13086023 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13086020 13086023 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13086020 13086023 . - . Note "left end: K03A11" CHROMOSOME_X assembly_tag Finished 13086120 13086123 . + . Note "Right: C53C7" CHROMOSOME_X assembly_tag annotation 13089494 13089496 . + . Note "This clone has CT here rather than CC" CHROMOSOME_X assembly_tag annotation 13090023 13090099 . + . CHROMOSOME_X assembly_tag annotation 13090100 13090160 . + . CHROMOSOME_X assembly_tag annotation 13090161 13090226 . + . CHROMOSOME_X assembly_tag annotation 13090227 13090304 . + . CHROMOSOME_X assembly_tag annotation 13090305 13090375 . + . CHROMOSOME_X assembly_tag annotation 13090376 13090389 . + . CHROMOSOME_X assembly_tag annotation 13094568 13094645 . + . CHROMOSOME_X assembly_tag annotation 13094646 13094656 . + . CHROMOSOME_X assembly_tag annotation 13095714 13095756 . + . CHROMOSOME_X assembly_tag annotation 13095757 13095823 . + . CHROMOSOME_X assembly_tag annotation 13096460 13096536 . + . CHROMOSOME_X assembly_tag annotation 13096537 13096584 . + . CHROMOSOME_X assembly_tag annotation 13097149 13097209 . + . CHROMOSOME_X assembly_tag annotation 13097210 13097264 . + . CHROMOSOME_X assembly_tag annotation 13100524 13100526 . + . Note "There is a G missing in this clone" CHROMOSOME_X assembly_tag annotation 13104826 13104884 . + . CHROMOSOME_X assembly_tag annotation 13110085 13110162 . + . CHROMOSOME_X assembly_tag annotation 13110163 13110215 . + . CHROMOSOME_X assembly_tag annotation 13112473 13112534 . + . CHROMOSOME_X assembly_tag annotation 13114820 13114887 . + . CHROMOSOME_X assembly_tag annotation 13114888 13114959 . + . CHROMOSOME_X assembly_tag Clone 13117013 13117018 . + . Note "left end: Left end of R03G8." CHROMOSOME_X assembly_tag Clone 13117013 13117018 . + . Note "left end: Start of R03G8" CHROMOSOME_X assembly_tag Finished 13117115 13117118 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13127420 13127423 . + . Note "right end: Right end of K03A11" CHROMOSOME_X assembly_tag annotation 13127981 13128016 . + . Note "Less than 50bp single strand, good terminator." CHROMOSOME_X assembly_tag Clone 13140700 13140704 . + . Note "left end: Start of F17H10." CHROMOSOME_X assembly_tag Clone 13140700 13140704 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13140701 13140704 . + . Note "left end: Left end of F17H10." CHROMOSOME_X assembly_tag annotation 13144684 13144700 . + . Note "unable to determine?" CHROMOSOME_X assembly_tag annotation 13146097 13146174 . + . Note "no -ve strand but terminators on the +ve." CHROMOSOME_X assembly_tag annotation 13146175 13146250 . + . CHROMOSOME_X assembly_tag annotation 13146250 13146326 . + . CHROMOSOME_X assembly_tag annotation 13146327 13146404 . + . CHROMOSOME_X assembly_tag annotation 13146405 13146435 . + . CHROMOSOME_X assembly_tag Clone 13154050 13154056 . + . Note "right end: End of R03G8." CHROMOSOME_X assembly_tag Clone 13160671 13160674 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13160671 13160674 . + . Note "left end: left end of F09A5" CHROMOSOME_X assembly_tag Clone 13160671 13160675 . + . Note "left end: start of F09A5" CHROMOSOME_X assembly_tag annotation 13165945 13165980 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13165981 13166032 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13166033 13166110 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13166111 13166186 . + . CHROMOSOME_X assembly_tag annotation 13166187 13166264 . + . Note "No +ve strand so terminated -ve." CHROMOSOME_X assembly_tag annotation 13166265 13166341 . + . CHROMOSOME_X assembly_tag annotation 13166342 13166354 . + . CHROMOSOME_X assembly_tag Clone 13180338 13180340 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13180338 13180340 . + . Note "right end: right end of F17H10" CHROMOSOME_X assembly_tag Finished 13197986 13197989 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13198086 13198089 . + . Note "right end: F09A5" CHROMOSOME_X assembly_tag Clone 13198086 13198089 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13198086 13198090 . + . Note "right end: End of F09A5" CHROMOSOME_X assembly_tag Clone 13198086 13198090 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 13203011 13203021 . + . Note "edited to max number (11) T's" CHROMOSOME_X assembly_tag Finished 13229337 13229340 . + . Note "Left: F09D5" CHROMOSOME_X assembly_tag Finished 13229437 13229440 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13229437 13229440 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13229437 13229440 . + . Note "right end: F48C11" CHROMOSOME_X assembly_tag Clone 13229437 13229440 . + . Note "right end: F48C11" CHROMOSOME_X assembly_tag Clone 13238343 13238348 . + . Note "left end: Left end of R12H7. No overlapping cosmid." CHROMOSOME_X assembly_tag Clone 13238343 13238348 . + . Note "left end: R12H7" CHROMOSOME_X assembly_tag Finished 13238442 13238445 . + . Note "Right: F09D5" CHROMOSOME_X assembly_tag Clone 13259217 13259220 . + . Note "left end: Left end of K08H2" CHROMOSOME_X assembly_tag Finished 13259217 13259220 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13259217 13259220 . + . Note "left end: K08H2" CHROMOSOME_X assembly_tag Clone 13274414 13274422 . + . Note "right end: right end of R12H7" CHROMOSOME_X assembly_tag Clone 13274414 13274422 . + . Note "right end: r/h of R12H7" CHROMOSOME_X assembly_tag annotation 13285585 13285762 . + . Note "no pos strand. Neg strand terminated. Reads labelled k82z are terminators." CHROMOSOME_X assembly_tag Clone 13295652 13295655 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13295652 13295655 . + . Note "left end: K09A11" CHROMOSOME_X assembly_tag Clone 13295652 13295655 . + . Note "left end: Left end of K09A11" CHROMOSOME_X assembly_tag Clone 13295652 13295655 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13295752 13295755 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13302723 13302726 . + . Note "right end: Right end of K08H2" CHROMOSOME_X assembly_tag Finished 13316407 13316412 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13316407 13316412 . + . Note "left end: Left end of R04D3" CHROMOSOME_X assembly_tag Clone 13316407 13316412 . + . Note "left end: ?Start of R04D3" CHROMOSOME_X assembly_tag Clone 13316407 13316412 . + . Note "left end: " CHROMOSOME_X assembly_tag annotation 13334364 13334366 . + . Note "There is one C missing in this clone" CHROMOSOME_X assembly_tag annotation 13335068 13335119 . + . CHROMOSOME_X assembly_tag Clone 13336503 13336506 . + . Note "right end: Right hand end of K09A11" CHROMOSOME_X assembly_tag annotation 13337609 13337614 . + . Note "There are four bases (AGTT) missing from this clone" CHROMOSOME_X assembly_tag annotation 13338858 13338929 . + . CHROMOSOME_X assembly_tag annotation 13338930 13338956 . + . CHROMOSOME_X assembly_tag annotation 13340672 13340738 . + . CHROMOSOME_X assembly_tag annotation 13340739 13340752 . + . CHROMOSOME_X assembly_tag annotation 13341362 13341406 . + . CHROMOSOME_X assembly_tag annotation 13341407 13341484 . + . CHROMOSOME_X assembly_tag annotation 13341485 13341561 . + . CHROMOSOME_X assembly_tag annotation 13341562 13341637 . + . CHROMOSOME_X assembly_tag annotation 13341638 13341665 . + . CHROMOSOME_X assembly_tag annotation 13341666 13341738 . + . CHROMOSOME_X assembly_tag annotation 13341739 13341809 . + . CHROMOSOME_X assembly_tag annotation 13341847 13341922 . + . CHROMOSOME_X assembly_tag annotation 13341923 13341926 . + . CHROMOSOME_X assembly_tag annotation 13341927 13341968 . + . CHROMOSOME_X assembly_tag Clone 13342408 13342411 . + . Note "left end: Left end of F46G10" CHROMOSOME_X assembly_tag Clone 13342408 13342411 . + . Note "left end: ?Left end of F46G10" CHROMOSOME_X assembly_tag Clone 13342408 13342411 . + . Note "left end: Left end of F46G10" CHROMOSOME_X assembly_tag Finished 13342508 13342514 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13354850 13354855 . + . Note "right end: Right end of R04D3" CHROMOSOME_X assembly_tag annotation 13356290 13356313 . + . Note "20 Gs edited, possibly only 19. 4 Ts edited, possibly only 3." CHROMOSOME_X assembly_tag Clone 13383141 13383144 . + . Note "left end: left end C49F8" CHROMOSOME_X assembly_tag Finished 13383141 13383144 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13384627 13384630 . + . Note "right end: Right end of F46G10" CHROMOSOME_X assembly_tag Clone 13384627 13384630 . + . Note "right end: Right end of F46G10" CHROMOSOME_X assembly_tag Clone 13422472 13422475 . + . Note "left end: Left end of F02C12" CHROMOSOME_X assembly_tag Clone 13422472 13422475 . + . Note "left end: Left end of F02C12" CHROMOSOME_X assembly_tag Finished 13422472 13422475 . + . Note "Left: F02C12" CHROMOSOME_X assembly_tag Finished 13422572 13422575 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13442060 13442063 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13442060 13442063 . + . Note "Left: C29F7" CHROMOSOME_X assembly_tag Clone 13442060 13442063 . + . Note "left end: Left end of C29F7" CHROMOSOME_X assembly_tag Finished 13442160 13442163 . + . Note "Right: F02C12" CHROMOSOME_X assembly_tag Clone 13459347 13459350 . + . Note "right end: " CHROMOSOME_X assembly_tag Finished 13477539 13477542 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13477539 13477542 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13477539 13477542 . - . Note "left end: F02D10" CHROMOSOME_X assembly_tag Finished 13477639 13477642 . + . Note "Right: C29F7" CHROMOSOME_X assembly_tag annotation 13479572 13479647 . + . CHROMOSOME_X assembly_tag annotation 13479648 13479715 . + . CHROMOSOME_X assembly_tag Clone 13483096 13483099 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13483096 13483099 . + . Note "right end: End of C29F7" CHROMOSOME_X assembly_tag annotation 13484068 13484086 . + . CHROMOSOME_X assembly_tag annotation 13484147 13484223 . + . CHROMOSOME_X assembly_tag annotation 13484224 13484232 . + . CHROMOSOME_X assembly_tag annotation 13486552 13486608 . + . CHROMOSOME_X assembly_tag annotation 13486679 13486748 . + . CHROMOSOME_X assembly_tag annotation 13486749 13486788 . + . CHROMOSOME_X assembly_tag annotation 13492402 13492474 . + . CHROMOSOME_X assembly_tag annotation 13492475 13492479 . + . CHROMOSOME_X assembly_tag Clone 13502797 13502800 . + . Note "left end: Start of F15A2" CHROMOSOME_X assembly_tag Clone 13502797 13502800 . + . Note "left end: " CHROMOSOME_X assembly_tag Clone 13502797 13502800 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13502797 13502800 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13502891 13502897 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 13510292 13510295 . + . CHROMOSOME_X assembly_tag Clone 13510292 13510295 . + . Note "right end: Right end F02D10" CHROMOSOME_X assembly_tag annotation 13513988 13514023 . + . Note "Single clone. Restriction digest confirms assembly." CHROMOSOME_X assembly_tag annotation 13514078 13514110 . + . Note "Single clone. Restriction digest confirms assembly." CHROMOSOME_X assembly_tag annotation 13530418 13530493 . + . Note "Number of GAs may not be accurate." CHROMOSOME_X assembly_tag Finished 13540754 13540757 . + . Note "Left: H06A10" CHROMOSOME_X assembly_tag Clone 13540854 13540857 . + . Note "right end: F15A2" CHROMOSOME_X assembly_tag Finished 13540854 13540857 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13540854 13540857 . - . Note "right end: F15A2" CHROMOSOME_X assembly_tag Clone 13552096 13552099 . + . Note "left end: Left end of F18H3" CHROMOSOME_X assembly_tag Clone 13552096 13552099 . + . Note "left end: F18H3" CHROMOSOME_X assembly_tag Finished 13552192 13552195 . - . Note "Right: H06A10" CHROMOSOME_X assembly_tag annotation 13556946 13556958 . + . Note "Some clones are calling 12 As, some are calling 13. (I've editted to 13)." CHROMOSOME_X assembly_tag Clone 13566289 13566294 . + . Note "left end: Left end of R01E6" CHROMOSOME_X assembly_tag Clone 13566289 13566294 . + . Note "left end: Left end R01E6" CHROMOSOME_X assembly_tag Finished 13566289 13566294 . + . Note "Left: R01E6" CHROMOSOME_X assembly_tag Clone 13589611 13589614 . + . Note "right end: Right end of F18H3" CHROMOSOME_X assembly_tag Clone 13607122 13607125 . + . Note "left end: Left end of F54B11" CHROMOSOME_X assembly_tag Clone 13607122 13607125 . + . Note "left end: Left end of F54B11" CHROMOSOME_X assembly_tag Finished 13607122 13607125 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13607122 13607125 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13607222 13607225 . + . Note "Right: R01E6" CHROMOSOME_X assembly_tag Clone 13607456 13607461 . + . Note "right end: Right end of R01E6" CHROMOSOME_X assembly_tag Clone 13607456 13607461 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 13611237 13611241 . + . Note "This clone is missing a G here" CHROMOSOME_X assembly_tag annotation 13614255 13614261 . + . CHROMOSOME_X assembly_tag annotation 13618397 13618399 . + . CHROMOSOME_X assembly_tag annotation 13620027 13620047 . + . CHROMOSOME_X assembly_tag annotation 13620192 13620268 . + . CHROMOSOME_X assembly_tag annotation 13620269 13620298 . + . CHROMOSOME_X assembly_tag annotation 13621175 13621198 . + . CHROMOSOME_X assembly_tag annotation 13626113 13626189 . + . CHROMOSOME_X assembly_tag annotation 13626190 13626261 . + . CHROMOSOME_X assembly_tag annotation 13626609 13626611 . + . Note "There is a G missing from this clone here" CHROMOSOME_X assembly_tag annotation 13637746 13637820 . + . CHROMOSOME_X assembly_tag annotation 13637821 13637858 . + . CHROMOSOME_X assembly_tag annotation 13645761 13645785 . + . CHROMOSOME_X assembly_tag Finished 13647772 13647775 . + . Note "Left: Y12A6A" CHROMOSOME_X assembly_tag Finished 13647868 13647871 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13647868 13647871 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13647868 13647871 . - . Note "right end: F54B11" CHROMOSOME_X assembly_tag Clone 13665170 13665173 . + . Note "left end: " CHROMOSOME_X assembly_tag Finished 13665170 13665173 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13665170 13665173 . + . Note "left end: C40C9" CHROMOSOME_X assembly_tag Finished 13665266 13665269 . - . Note "Right: Y12A6A" CHROMOSOME_X assembly_tag Finished 13691274 13691277 . + . Note "Left: C04A11" CHROMOSOME_X assembly_tag Clone 13691274 13691277 . + . Note "left end: left end C04A11" CHROMOSOME_X assembly_tag Clone 13691274 13691277 . + . Note "left end: C04A11" CHROMOSOME_X assembly_tag Finished 13691374 13691377 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13707007 13707010 . + . Note "right end: C40C9" CHROMOSOME_X assembly_tag Clone 13707007 13707010 . + . Note "right end: " CHROMOSOME_X assembly_tag annotation 13725932 13726118 . + . Note "bases 34659 - 34840 (in the inverted\nrepeat over bases 34320 - 35050) covered by a single sonicated clone\nfrom a restriction fragment" CHROMOSOME_X assembly_tag Clone 13728276 13728279 . + . Note "left end: K02D3" CHROMOSOME_X assembly_tag Clone 13728276 13728279 . + . Note "left end: left end of K02D3" CHROMOSOME_X assembly_tag Finished 13728276 13728279 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13728376 13728379 . + . Note "Right: C04A11" CHROMOSOME_X assembly_tag Clone 13738276 13738279 . + . Note "right end: Right end C04A11" CHROMOSOME_X assembly_tag Finished 13748301 13748304 . + . Note "Left: " CHROMOSOME_X assembly_tag Clone 13748301 13748304 . + . Note "left end: K11E4" CHROMOSOME_X assembly_tag Clone 13748301 13748304 . + . Note "left end: K11E4" CHROMOSOME_X assembly_tag Finished 13748401 13748404 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 13754971 13754981 . + . Note "All reads in K11E4 call 10 As. All reads in K02D3 call 11 As. I've edited to the maximum." CHROMOSOME_X assembly_tag Clone 13761888 13761891 . + . Note "right end: K02D3" CHROMOSOME_X assembly_tag annotation 13774062 13774083 . + . Note "Number of Cs may not be accurate." CHROMOSOME_X assembly_tag Finished 13782192 13782195 . + . Note "Left: Y6D6A" CHROMOSOME_X assembly_tag Finished 13782292 13782295 . + . Note "Right: " CHROMOSOME_X assembly_tag Clone 13782292 13782295 . + . Note "right end: K11E4" CHROMOSOME_X assembly_tag Clone 13782292 13782295 . - . Note "right end: K11E4" CHROMOSOME_X assembly_tag Clone 13782380 13782383 . + . Note "left end: F55F3" CHROMOSOME_X assembly_tag Clone 13782380 13782383 . - . Note "left end: F55F3" CHROMOSOME_X assembly_tag Finished 13782380 13782383 . - . Note "Left: F55F3" CHROMOSOME_X assembly_tag Finished 13782476 13782479 . - . Note "Right: Y6D6A" CHROMOSOME_X assembly_tag annotation 13794127 13794146 . - . Note "Single stranded region in inverted \nrepeat. Assembly confirmed by \nrestriction digest." CHROMOSOME_X assembly_tag Clone 13805343 13805346 . - . Note "right end: ZK1086" CHROMOSOME_X assembly_tag annotation 13809864 13809889 . - . Note "[ ] Tandem repeat \n[ ] Single clone region \n[ ] Forced join \n[X] Other \nComment: Number of Gs is uncertain\n" CHROMOSOME_X assembly_tag annotation 13821142 13821154 . - . Note "3 clones give 12 As. (edited to 13)\n6 clones give 13 As \n1 clone gives 14 As (edited to 13)" CHROMOSOME_X assembly_tag Finished 13824897 13824900 . - . Note "Right: F55F3" CHROMOSOME_X assembly_tag Clone 13824897 13824900 . - . Note "right end: F55F3" CHROMOSOME_X assembly_tag Finished 13842090 13842093 . + . Note "Left: F19D8" CHROMOSOME_X assembly_tag Clone 13842090 13842093 . + . Note "left end: F19D8" CHROMOSOME_X assembly_tag annotation 13842090 13842148 . + . CHROMOSOME_X assembly_tag annotation 13842149 13842164 . + . CHROMOSOME_X assembly_tag annotation 13842702 13842778 . + . CHROMOSOME_X assembly_tag annotation 13842779 13842788 . + . CHROMOSOME_X assembly_tag annotation 13849141 13849143 . + . Note "This clone has a T missing here" CHROMOSOME_X assembly_tag annotation 13849795 13849797 . + . Note "This clone has an A missing here" CHROMOSOME_X assembly_tag annotation 13850234 13850287 . + . CHROMOSOME_X assembly_tag annotation 13850818 13850851 . + . Note "terminated not double stranded" CHROMOSOME_X assembly_tag annotation 13852088 13852164 . + . CHROMOSOME_X assembly_tag annotation 13852165 13852172 . + . CHROMOSOME_X assembly_tag annotation 13856448 13856450 . + . Note "An A missing from this clone" CHROMOSOME_X assembly_tag annotation 13858862 13858922 . + . CHROMOSOME_X assembly_tag annotation 13858923 13858938 . + . CHROMOSOME_X assembly_tag annotation 13858939 13858945 . + . CHROMOSOME_X assembly_tag annotation 13858946 13858983 . + . CHROMOSOME_X assembly_tag annotation 13858984 13858993 . + . CHROMOSOME_X assembly_tag annotation 13860216 13860218 . + . Note "This clone has a T missing here" CHROMOSOME_X assembly_tag annotation 13861953 13861972 . + . CHROMOSOME_X assembly_tag oligo 13862785 13862804 . + . Note "serial#=\ntemplate=zl42a3.s1 \nsequence=GGTTGAAAAAACCGTTTAAC\nflags=\nF19D8.10 " CHROMOSOME_X assembly_tag annotation 13864528 13864531 . + . Note "There is a T missing from this clone" CHROMOSOME_X assembly_tag annotation 13865549 13865551 . + . Note "There is a A missing from this clone" CHROMOSOME_X assembly_tag annotation 13867563 13867640 . + . CHROMOSOME_X assembly_tag annotation 13867641 13867653 . + . CHROMOSOME_X assembly_tag annotation 13867652 13867704 . + . CHROMOSOME_X assembly_tag annotation 13868988 13868996 . + . CHROMOSOME_X assembly_tag annotation 13868997 13869028 . + . CHROMOSOME_X assembly_tag annotation 13870374 13870376 . + . Note "There is a T missing from this clone" CHROMOSOME_X assembly_tag Clone 13871386 13871389 . + . Note "left end: Left end of M03B6" CHROMOSOME_X assembly_tag Clone 13871386 13871389 . + . Note "left end: M03B6" CHROMOSOME_X assembly_tag Finished 13871386 13871389 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13871486 13871489 . + . Note "Right: F19D8" CHROMOSOME_X assembly_tag Clone 13879167 13879170 . + . Note "right end: " CHROMOSOME_X assembly_tag Clone 13879167 13879170 . + . Note "right end: F19D8" CHROMOSOME_X assembly_tag annotation 13879553 13879561 . + . Note "Single phagemid clone. Assembly confirmed by restriction digest." CHROMOSOME_X assembly_tag annotation 13879595 13879651 . + . Note "Single M13 clone. Assembly confirmed by restriction digest." CHROMOSOME_X assembly_tag annotation 13881006 13881014 . + . Note "Half the subclones read 9 Ts, half read 8. Edited to 9.." CHROMOSOME_X assembly_tag Clone 13898205 13898209 . + . Note "left end: Left end of T21H8" CHROMOSOME_X assembly_tag Finished 13898205 13898210 . + . Note "Left: " CHROMOSOME_X assembly_tag Finished 13898305 13898308 . + . Note "Right: " CHROMOSOME_X assembly_tag annotation 13903431 13903504 . + . Note "No -vestrand so terminated + several times." CHROMOSOME_X assembly_tag annotation 13903505 13903552 . + . Note "No -ve strand so terminated the +ve several times." CHROMOSOME_X assembly_tag ambiguous 13903714 13903719 . + . CHROMOSOME_X assembly_tag annotation 13904359 13904361 . + . Note "reads only 9a's." CHROMOSOME_X assembly_tag annotation 13906379 13906392 . + . Note "This read is missing these edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13906647 13906658 . + . Note "This read here is missing these few edited bases due to a machine fault." CHROMOSOME_X assembly_tag annotation 13908477 13908487 . +