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This directory contains programs developed for the human genome project, mostly to do with assembling the working draft, setting up the browser database, or running the browser.
| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| affyGnf/ | 07-Feb-2012 11:18 | - | |
| affyTransciptome/ | 07-Feb-2012 11:18 | - | |
| agpAllToFaFile/ | 14-May-2012 08:23 | - | |
| agpCloneCheck/ | 14-May-2012 08:23 | - | |
| agpCloneList/ | 14-May-2012 08:23 | - | |
| agpMergeChromScaf/ | 07-Feb-2012 11:18 | - | |
| agpSangerUnfinished/ | 07-Feb-2012 11:18 | - | |
| agpToFa/ | 14-May-2012 08:23 | - | |
| agpToGl/ | 14-May-2012 08:23 | - | |
| agpTweak/ | 07-Feb-2012 11:18 | - | |
| altGraph/ | 07-Feb-2012 11:18 | - | |
| altSplice/ | 12-Jun-2010 18:33 | - | |
| autoDtd/ | 14-May-2012 08:23 | - | |
| autoSql/ | 14-May-2012 08:23 | - | |
| autoXml/ | 14-May-2012 08:23 | - | |
| baseMask/ | 12-Jun-2010 18:33 | - | |
| bedAs/ | 12-Jun-2010 18:33 | - | |
| bedIntersect/ | 14-May-2012 08:23 | - | |
| bedItemOverlapCount/ | 14-May-2012 08:23 | - | |
| bedOrBlocks/ | 14-May-2012 08:23 | - | |
| bedOverlap/ | 22-Mar-2011 16:10 | - | |
| bedSort/ | 14-May-2012 08:23 | - | |
| bedSplitOnChrom/ | 14-May-2012 08:23 | - | |
| bedThickOnly/ | 07-Feb-2012 11:18 | - | |
| bedToGenePred/ | 14-May-2012 08:23 | - | |
| bioImage/ | 12-Jun-2010 18:33 | - | |
| blastToPsl/ | 14-May-2012 08:23 | - | |
| borfBig/ | 14-May-2012 08:23 | - | |
| cartDump/ | 14-May-2012 08:22 | - | |
| cartReset/ | 14-May-2012 08:22 | - | |
| ccTrack/ | 12-Jun-2010 18:33 | - | |
| cgiExample/ | 07-Feb-2012 11:18 | - | |
| checkCoverageGaps/ | 14-May-2012 08:23 | - | |
| checkHgFindSpec/ | 14-May-2012 08:23 | - | |
| checkTableCoords/ | 14-May-2012 08:23 | - | |
| chimpStuff/ | 12-Jun-2010 18:33 | - | |
| ctgFaToFa/ | 14-May-2012 08:23 | - | |
| ctgToChromFa/ | 14-May-2012 08:23 | - | |
| das/ | 14-May-2012 08:22 | - | |
| dbTrash/ | 14-May-2012 08:23 | - | |
| diffs | 31-Mar-2011 05:44 | 26K | |
| dnaGene/ | 12-Jun-2010 18:33 | - | |
| doc/ | 14-Jun-2010 15:41 | - | |
| embossToPsl/ | 14-May-2012 08:23 | - | |
| encode/ | 16-Apr-2012 14:54 | - | |
| ensGene.foo | 06-May-2012 22:17 | 9.7M | |
| estOrient/ | 14-May-2012 08:23 | - | |
| extractPslForLfs/ | 07-Feb-2012 11:18 | - | |
| fakeFinContigs/ | 14-May-2012 08:23 | - | |
| fakeOut/ | 14-May-2012 08:23 | - | |
| featureBits/ | 14-May-2012 08:23 | - | |
| ffaToFa/ | 14-May-2012 08:23 | - | |
| fishClones/ | 14-May-2012 08:23 | - | |
| foo | 18-Apr-2012 00:40 | 6.9K | |
| formatZfishSts/ | 12-Jun-2010 18:33 | - | |
| fqToQa/ | 14-May-2012 08:23 | - | |
| fqToQac/ | 14-May-2012 08:23 | - | |
| fragPart/ | 14-May-2012 08:23 | - | |
| gbGetEntries/ | 14-May-2012 08:23 | - | |
| gbOneAcc/ | 14-May-2012 08:23 | - | |
| gbToFaRa/ | 14-May-2012 08:23 | - | |
| geneBounds/ | 17-Jun-2010 16:48 | - | |
| geneOverlap/ | 14-Mar-2011 12:29 | - | |
| genePredCheck/ | 14-May-2012 08:23 | - | |
| genePredHisto/ | 14-May-2012 08:23 | - | |
| genePredSingleCover/ | 14-May-2012 08:23 | - | |
| genePredToFakePsl/ | 14-May-2012 08:23 | - | |
| genePredToGtf/ | 14-May-2012 08:23 | - | |
| genePredToMafFrames/ | 14-May-2012 08:23 | - | |
| genePredToMrna/ | 12-Jun-2010 18:33 | - | |
| genoPheno/ | 12-Jun-2010 18:33 | - | |
| getFeatDna/ | 14-May-2012 08:23 | - | |
| getRna/ | 14-May-2012 08:23 | - | |
| getRnaPred/ | 14-May-2012 08:23 | - | |
| getallpep/ | 12-Jun-2010 18:33 | - | |
| gigAssembler/ | 12-Jun-2010 18:33 | - | |
| gisaid/ | 21-Jun-2010 22:45 | - | |
| gpStats/ | 14-May-2012 08:23 | - | |
| gpToGtf/ | 14-May-2012 08:23 | - | |
| gpcrParser/ | 14-May-2012 08:23 | - | |
| gsBig/ | 14-May-2012 08:23 | - | |
| gsid/ | 12-Jun-2010 18:33 | - | |
| hgApi/ | 14-May-2012 08:22 | - | |
| hgBatch/ | 07-Feb-2012 11:18 | - | |
| hgBlat/ | 14-May-2012 08:22 | - | |
| hgBlatTest/ | 07-Feb-2012 11:18 | - | |
| hgCGAP/ | 12-Jun-2010 18:33 | - | |
| hgCert/ | 18-May-2011 15:43 | - | |
| hgChroms/ | 14-May-2012 08:23 | - | |
| hgConvert/ | 14-May-2012 09:04 | - | |
| hgCoordConv/ | 07-Feb-2012 11:18 | - | |
| hgCustom/ | 14-May-2012 08:22 | - | |
| hgFileSearch/ | 14-May-2012 08:22 | - | |
| hgFileUi/ | 14-May-2012 08:22 | - | |
| hgGateway/ | 14-May-2012 08:22 | - | |
| hgGene/ | 14-May-2012 08:22 | - | |
| hgGeneBands/ | 07-Feb-2012 11:18 | - | |
| hgGeneList/ | 12-Jun-2010 18:33 | - | |
| hgGeneRing/ | 07-Feb-2012 11:18 | - | |
| hgGenome/ | 14-May-2012 08:22 | - | |
| hgGetAnn/ | 14-May-2012 08:23 | - | |
| hgHubConnect/ | 14-May-2012 08:22 | - | |
| hgKnownGeneList/ | 14-May-2012 08:23 | - | |
| hgLiftOver/ | 14-May-2012 08:22 | - | |
| hgLogin/ | 14-May-2012 08:22 | - | |
| hgNotAvail/ | 07-Feb-2012 11:18 | - | |
| hgNotYet/ | 07-Feb-2012 11:18 | - | |
| hgPal/ | 14-May-2012 08:22 | - | |
| hgPcr/ | 14-May-2012 08:22 | - | |
| hgSelect/ | 14-May-2012 08:23 | - | |
| hgSession/ | 14-May-2012 08:22 | - | |
| hgSpeciesRna/ | 14-May-2012 08:23 | - | |
| hgSuggest/ | 14-May-2012 08:22 | - | |
| hgTables/ | 14-May-2012 08:22 | - | |
| hgTablesTest/ | 14-May-2012 08:23 | - | |
| hgText/ | 07-Feb-2012 11:18 | - | |
| hgTrackUi/ | 14-May-2012 08:22 | - | |
| hgTracks/ | 14-May-2012 08:22 | - | |
| hgVarAnnogrator/ | 03-May-2012 11:17 | - | |
| hgc/ | 14-May-2012 08:22 | - | |
| hgcentralTidy/ | 14-Mar-2011 12:29 | - | |
| hgsql/ | 14-May-2012 08:23 | - | |
| hgsqlLocal/ | 14-May-2012 08:23 | - | |
| hgsqlSwapTables/ | 14-May-2012 08:23 | - | |
| hgsqlTableDate/ | 14-May-2012 08:23 | - | |
| hgsqladmin/ | 14-May-2012 08:23 | - | |
| hgsqldump/ | 14-May-2012 08:23 | - | |
| hgsqldumpLocal/ | 14-May-2012 08:23 | - | |
| hgsqlimport/ | 14-May-2012 08:23 | - | |
| htdocs/ | 12-Jun-2010 18:33 | - | |
| inc/ | 11-May-2012 07:31 | - | |
| intronEnds/ | 14-May-2012 08:23 | - | |
| intronSizes/ | 07-Feb-2012 11:18 | - | |
| jaxMgi/ | 24-Jun-2011 06:32 | - | |
| js/ | 14-May-2012 09:07 | - | |
| knownGene.foo | 06-May-2012 22:15 | 4.1M | |
| lfsOverlap/ | 14-May-2012 08:23 | - | |
| lib/ | 14-May-2012 08:22 | - | |
| liftAcross/ | 14-May-2012 08:23 | - | |
| liftAgp/ | 14-May-2012 08:23 | - | |
| liftFrags/ | 14-May-2012 08:23 | - | |
| liftOver/ | 14-May-2012 08:23 | - | |
| liftUp/ | 14-May-2012 08:23 | - | |
| logCrawl/ | 08-Dec-2011 21:44 | - | |
| makeDb/ | 10-Aug-2011 15:37 | - | |
| makeSeqs/ | 07-Feb-2012 11:18 | - | |
| makefile | 11-May-2012 07:31 | 5.3K | |
| makefile.bak | 06-Apr-2012 16:48 | 5.2K | |
| maskOutFa/ | 14-May-2012 08:23 | - | |
| mdToNcbiLift/ | 14-May-2012 08:23 | - | |
| merge | 12-Oct-2010 13:37 | 53K | |
| monitor/ | 12-Jun-2010 18:34 | - | |
| mouseStuff/ | 12-Jun-2010 18:34 | - | |
| mrnaToGene/ | 14-May-2012 08:23 | - | |
| nci60/ | 07-Feb-2012 11:18 | - | |
| near/ | 12-Jun-2010 18:34 | - | |
| oneShot/ | 18-Apr-2012 13:03 | - | |
| orthoMap/ | 07-Feb-2012 11:31 | - | |
| patCount/ | 14-May-2012 08:23 | - | |
| pdbSP/ | 12-Jun-2010 18:34 | - | |
| perf/ | 14-May-2012 08:23 | - | |
| phyloGif/ | 14-May-2012 08:22 | - | |
| pipeline/ | 12-Jun-2010 18:34 | - | |
| poster/ | 12-Jun-2010 18:34 | - | |
| protein/ | 10-Mar-2011 16:00 | - | |
| pslAnal/ | 21-Jun-2010 22:45 | - | |
| pslCDnaFilter/ | 14-May-2012 08:23 | - | |
| pslCDnaGenomeMatch/ | 07-Feb-2012 11:18 | - | |
| pslCat/ | 14-May-2012 08:24 | - | |
| pslCheck/ | 14-May-2012 08:24 | - | |
| pslCluster/ | 12-Jun-2010 18:34 | - | |
| pslCoverage/ | 14-May-2012 08:24 | - | |
| pslCrudeCmp/ | 07-Feb-2012 11:18 | - | |
| pslDiff/ | 14-May-2012 08:24 | - | |
| pslDist/ | 12-Jun-2010 18:34 | - | |
| pslDropOverlap/ | 14-May-2012 08:24 | - | |
| pslFilter/ | 14-May-2012 08:24 | - | |
| pslFilterBadCdna/ | 07-Feb-2012 11:18 | - | |
| pslFilterPrimers/ | 14-May-2012 08:24 | - | |
| pslGlue/ | 14-May-2012 08:24 | - | |
| pslHisto/ | 14-May-2012 08:24 | - | |
| pslHitPercent/ | 14-May-2012 08:24 | - | |
| pslIntronsOnly/ | 14-May-2012 08:24 | - | |
| pslMaxMap/ | 12-Jun-2010 18:34 | - | |
| pslOneTwo/ | 12-Jun-2010 18:34 | - | |
| pslPairs/ | 14-May-2012 08:24 | - | |
| pslPartition/ | 14-May-2012 08:24 | - | |
| pslPretty/ | 14-May-2012 08:22 | - | |
| pslPseudo/ | 07-Feb-2012 11:18 | - | |
| pslQuickFilter/ | 14-May-2012 08:24 | - | |
| pslRecalcMatch/ | 14-May-2012 08:24 | - | |
| pslReps/ | 14-May-2012 08:22 | - | |
| pslSelect/ | 14-May-2012 08:24 | - | |
| pslSimp/ | 14-May-2012 08:24 | - | |
| pslSomeRecords/ | 12-Jun-2010 18:34 | - | |
| pslSort/ | 14-May-2012 08:22 | - | |
| pslSortAcc/ | 14-May-2012 08:24 | - | |
| pslSplit/ | 07-Feb-2012 11:18 | - | |
| pslSplitOnTarget/ | 14-May-2012 08:24 | - | |
| pslStats/ | 14-May-2012 08:24 | - | |
| pslSwap/ | 14-May-2012 08:24 | - | |
| pslToBed/ | 14-May-2012 08:24 | - | |
| pslToChain/ | 12-Jun-2010 18:34 | - | |
| pslToFa/ | 14-Mar-2011 12:29 | - | |
| pslToPileup/ | 07-Feb-2012 11:18 | - | |
| pslUnpile/ | 14-May-2012 08:24 | - | |
| pslxToFa/ | 14-May-2012 08:24 | - | |
| qa/ | 07-Feb-2012 11:18 | - | |
| qaAgpToQacIdx/ | 12-Jun-2010 18:34 | - | |
| qaPushQ/ | 07-Feb-2012 11:18 | - | |
| qaToQac/ | 14-May-2012 08:24 | - | |
| qacAddGapIdx/ | 12-Jun-2010 18:34 | - | |
| qacAgpLift/ | 14-May-2012 08:24 | - | |
| qacIndex/ | 12-Jun-2010 18:34 | - | |
| qacToQa/ | 14-May-2012 08:24 | - | |
| qacToWig/ | 14-May-2012 08:24 | - | |
| raSort/ | 12-Jun-2010 18:34 | - | |
| randomPlacement/ | 12-Jun-2010 18:34 | - | |
| ratStuff/ | 17-Jun-2010 16:48 | - | |
| recycleDb/ | 21-Jun-2010 22:45 | - | |
| refGene.foo | 06-May-2012 22:17 | 2.1M | |
| regulate/ | 06-Apr-2011 18:34 | - | |
| relPairs/ | 14-May-2012 08:24 | - | |
| reviewSanity/ | 14-May-2012 08:24 | - | |
| rnaStructure/ | 21-Jun-2010 22:45 | - | |
| rtdbWebUpdate/ | 12-Jun-2010 18:34 | - | |
| sage/ | 14-May-2012 08:24 | - | |
| sageVisCGI/ | 13-Jan-2011 18:18 | - | |
| sampleTracks/ | 12-Jun-2010 18:34 | - | |
| scanRa/ | 14-May-2012 08:24 | - | |
| secure/ | 07-Feb-2012 11:19 | - | |
| semiNorm/ | 14-May-2012 08:24 | - | |
| sim4big/ | 14-May-2012 08:24 | - | |
| snp/ | 12-Jun-2010 18:34 | - | |
| snpException/ | 14-May-2012 08:24 | - | |
| spideyToPsl/ | 14-May-2012 08:24 | - | |
| splignToPsl/ | 07-Feb-2012 11:19 | - | |
| splitFa/ | 14-May-2012 08:24 | - | |
| splitFaIntoContigs/ | 14-May-2012 08:24 | - | |
| sqlEnvTest.sh | 12-Jun-2010 18:34 | 590 | |
| sqlToXml/ | 14-May-2012 08:24 | - | |
| status | 07-Dec-2010 17:22 | 2.9K | |
| stsMarkers/ | 12-Jun-2010 18:34 | - | |
| synMap/ | 07-Feb-2012 11:19 | - | |
| test/ | 14-May-2012 08:24 | - | |
| trash/ | 07-Jan-2011 18:20 | - | |
| trfBig/ | 14-May-2012 08:24 | - | |
| tutorial/ | 12-Jun-2010 18:34 | - | |
| txCds/ | 21-Jun-2010 22:45 | - | |
| txGene/ | 01-Feb-2011 12:38 | - | |
| txGraph/ | 22-Mar-2012 14:16 | - | |
| txPaper/ | 24-Apr-2012 18:12 | - | |
| ultras/ | 12-Jun-2010 18:34 | - | |
| uniqSize/ | 14-May-2012 08:24 | - | |
| updateStsInfo/ | 14-May-2012 08:24 | - | |
| useCount/ | 07-Feb-2012 11:19 | - | |
| utils/ | 17-Apr-2012 17:31 | - | |
| var/ | 07-Feb-2012 11:19 | - | |
| visiGene/ | 21-Jun-2010 22:45 | - | |
| wikiMods/ | 12-Oct-2011 14:35 | - | |
| wikiPlot/ | 07-Feb-2012 11:19 | - | |
| xmlCat/ | 14-May-2012 08:24 | - | |
| xmlToSql/ | 14-May-2012 08:24 | - | |
| zfishBacClonesandSts/ | 07-Feb-2012 11:19 | - | |
| zoo/ | 12-Jun-2010 18:34 | - | |