466	./ameme/oldparts.c
2293	./ameme/amemeFloat.c
40	./ameme/hmmerFace.c
2321	./ameme/fixpAmeme.c
3255	./ameme/ameme.c
566	./ameme/fragFind.c
61	./utils/colTransform/colTransform.c
210	./utils/faCat/faCat.c
95	./utils/cCp/cCp.c
102	./utils/gapSplit/gapSplit.c
82	./utils/randomLines/randomLines.c
58	./utils/udcCleanup/udcCleanup.c
142	./utils/bestThreshold/bestThreshold.c
151	./utils/bedRemoveOverlap/bedRemoveOverlap.c
66	./utils/pslPosTarget/pslPosTarget.c
186	./utils/chainDist/chainDist.c
128	./utils/faToTwoBit/faToTwoBit.c
66	./utils/faFlyBaseToUcsc/faFlyBaseToUcsc.c
51	./utils/lineCount/lineCount.c
313	./utils/findMotif/findMotif.c
97	./utils/nibCheck/nibCheck.c
247	./utils/wigTestMaker/wigTestMaker.c
56	./utils/fileExists/fileExists.c
560	./utils/bedGraphToBigWig/bedGraphToBigWig.c
54	./utils/nt4Frag/nt4Frag.c
81	./utils/faTrimPolyA/faTrimPolyA.c
573	./utils/est2genomeToPsl/est2genomeToPsl.c
58	./utils/detab/detab.c
177	./utils/callGraph/callGraph.c
138	./utils/wgetMd5/wgetMd5.c
59	./utils/aNotB/aNotB.c
264	./utils/colorConv/colorConv.c
150	./utils/gffPeek/gffPeek.c
54	./utils/aveCols/aveCols.c
299	./utils/newProg/newProg.c
188	./utils/faGapSizes/faGapSizes.c
63	./utils/faLowerToN/faLowerToN.c
66	./utils/faRc/faRc.c
410	./utils/convolve/convolve.c
44	./utils/scrambleFa/scrambleFa.c
69	./utils/jkUniq/jkUniq.c
222	./utils/wigSort/wigSort.c
97	./utils/colCount/colCount.c
139	./utils/faCmp/faCmp.c
379	./utils/htmlCheck/htmlCheck.c
620	./utils/raSqlQuery/raSqlQuery.c
183	./utils/raSqlQuery/raRecord.c
104	./utils/rowsToCols/rowsToCols.c
82	./utils/bigWigToWig/bigWigToWig.c
168	./utils/wigCorrelate/wigCorrelate.c
53	./utils/sortFa/sortFa.c
53	./utils/faPolyASizes/faPolyASizes.c
136	./utils/tTestTwo/tTestTwo.c
120	./utils/bigBedSummary/bigBedSummary.c
78	./utils/wordLine/wordLine.c
85	./utils/bedClip/bedClip.c
35	./utils/faSplit/t.c
759	./utils/faSplit/faSplit.c
89	./utils/bigWigSummary/bigWigSummary.c
51	./utils/addCols/addCols.c
46	./utils/faOneRecord/faOneRecord.c
71	./utils/raToLines/linesToRa.c
69	./utils/raToLines/raToLines.c
134	./utils/subColumn/subColumn.c
57	./utils/undupFa/undupFa.c
116	./utils/raToTab/raToTab.c
50	./utils/headRest/headRest.c
48	./utils/sizeof/sizeof.c
82	./utils/countChars/countChars.c
35	./utils/tailLines/tailLines.c
51	./utils/rmFaDups/rmFaDups.c
51	./utils/nibSize/nibSize.c
48	./utils/geneStarts/geneStarts.c
67	./utils/faAlign/faAlign.c
80	./utils/splitFile/splitFile.c
106	./utils/raMerge/raMerge.c
211	./utils/scaffoldFaToAgp/scaffoldFaToAgp.c
62	./utils/correlate/correlate.c
107	./utils/bigWigToBedGraph/bigWigToBedGraph.c
206	./utils/ave/ave.c
180	./utils/bigWigMerge/bigWigMerge.c
38	./utils/venn/venn.c
61	./utils/faToFastq/faToFastq.c
751	./utils/bdfToGem/bdfToGem.c
67	./utils/genFedTableDef/genFedTableDef.c
39	./utils/toLower/toLower.c
119	./utils/bedCommonRegions/bedCommonRegions.c
60	./utils/lineRange/lineRange.c
65	./utils/paraFetch/paraFetch.c
92	./utils/bedRestrictToPositions/bedRestrictToPositions.c
169	./utils/faNoise/faNoise.c
253	./utils/splitFileByColumn/splitFileByColumn.c
133	./utils/faNcbiToUcsc/faNcbiToUcsc.c
691	./utils/bedToBigBed/bedToBigBed.c
220	./utils/textHist2/textHist2.c
303	./utils/bigWigAverageOverBed/bigWigAverageOverBed.c
441	./utils/ccCp/ccCp.c
250	./utils/fastqToFa/fastqToFa.c
727	./utils/subs/subs.c
68	./utils/endsInLf/endsInLf.c
45	./utils/catUncomment/catUncomment.c
101	./utils/bigBedInfo/bigBedInfo.c
39	./utils/toUpper/toUpper.c
39	./utils/tickToDate/tickToDate.c
171	./utils/faFilter/faFilter.c
277	./utils/bbTest/bbTest.c
204	./utils/wigToBedGraph/wigToBedGraph.c
101	./utils/bigBedToBed/bigBedToBed.c
164	./utils/pslToPslx/pslToPslx.c
327	./utils/ccCpLock/ccCp.c
289	./utils/ccCpLock/ccCp_rsh.c
313	./utils/ccCpLock/ccCp.3.c
212	./utils/tableSum/tableSum.c
356	./utils/faTrimRead/faTrimRead.c
161	./utils/wigAsciiToBinary/wigZoom.c
485	./utils/wigAsciiToBinary/wigAsciiToBinary.c
53	./utils/wigAsciiToBinary/wigBedToBinary.c
94	./utils/weedLines/weedLines.c
124	./utils/faToTab/faToTab.c
59	./utils/faToNib/faToNib.c
99	./utils/fastaToPsl/fastaToPsl.c
112	./utils/wigSetSpanOrStep/wigSetSpanOrStep.c
42	./utils/calc/calc.c
31	./utils/htmlPics/htmlPics.c
51	./utils/shuffleLines/shuffleLines.c
91	./utils/catDir/catDir.c
57	./utils/faRenameRecords/faRenameRecords.c
70	./utils/spacedToTab/spacedToTab.c
88	./utils/faGapLocs/faGapLocs.c
266	./utils/bedGeneParts/bedGeneParts.c
913	./utils/git-reports/git-reports.c
87	./utils/twoBitInfo/twoBitInfo.c
194	./utils/pslToXa/pslToXa.c
150	./utils/jimgrep/jimgrep.c
83	./utils/faTrans/faTrans.c
69	./utils/minEachRow/minEachRow.c
153	./utils/bedToClosestPoint/bedToClosestPoint.c
84	./utils/faSomeRecords/faSomeRecords.c
47	./utils/timing/mktime.c
34	./utils/timing/gmtime.c
34	./utils/timing/localtime.c
131	./utils/pslLiftSubrangeBlat/pslLiftSubrangeBlat.c
98	./utils/bigWigInfo/bigWigInfo.c
118	./utils/faRandomize/faRandomize.c
183	./utils/raToSvmLight/raToSvmLight.c
118	./utils/jkShell/pipeTest.c
1886	./utils/jkShell/jkShell.c
266	./utils/faSize/faSize.c
108	./utils/nibFrag/nibFrag.c
117	./utils/combineFiles/combineFiles.c
219	./utils/vulgarToPsl/vulgarToPsl.c
102	./utils/subChar/subChar.c
93	./utils/raFromTab/raFromTab.c
173	./utils/faFilterN/faFilterN.c
74	./utils/stringify/stringify.c
175	./utils/lineFileSplit/lineFileSplit.c
75	./utils/faSimplify/faSimplify.c
195	./utils/paraSync/paraSync.c
185	./utils/faCount/faCount.c
95	./utils/wigToBed/wigToBed.c
105	./utils/linesInAllFiles/linesInAllFiles.c
197	./utils/fixCr/test/fa.c
197	./utils/fixCr/test/gotCr.c
51	./utils/fixCr/fixCr.c
69	./utils/wigToBigWig/wigToBigWig.c
202	./utils/twoBitToFa/twoBitToFa.c
69	./utils/maxEachRow/maxEachRow.c
56	./utils/faFrag/faFrag.c
40	./utils/upper/upper.c
185	./utils/sets/sets.c
271	./utils/wigAsciiCrunch/wigAsciiCrunch.c
240	./utils/plotDataMatrix/plotDataMatrix.c
471	./utils/textHistogram/textHistogram.c
43	./utils/chopFaLines/chopFaLines.c
114	./utils/greedyPack/greedyPack.c
74	./utils/dnsInfo/dnsInfo.c
2008	./tracks/tracks.c
186	./isPcr/isPcr/isPcr.c
182	./isPcr/webPcr/webPcr.c
97	./isPcr/gfPcr/gfPcr.c
324	./fuzzyFind/ffapp.c
253	./reformat/gbtofa/gbtofa.c
47	./reformat/gbNoDna/gbNoDna.c
121	./reformat/makeOrf2gene/makeOrf2gene.c
60	./reformat/fa4blast/fa4blast.c
140	./reformat/wabToSt/wabToSt.c
70	./reformat/fatont4/fatont4.c
186	./reformat/makefont/fnt2c.c
656	./reformat/gb2cdi/gb2cdi.c
135	./reformat/fsg/fsg.c
349	./reformat/moresyn/moresyn.c
272	./reformat/makec2c/makec2c.c
26	./reformat/gbToFaRa/keyFields.c
169	./reformat/geniegff/geniegff.c
65	./reformat/preonly/preonly.c
47	./reformat/gbNoRna/gbNoRna.c
309	./reformat/gffgenes/gffgenes.c
122	./wormAli/wormAli.c
1028	./gfServer/gfServer.c
1285	./jkOwnLib/ffSeedExtend.c
134	./jkOwnLib/trans3.c
464	./jkOwnLib/patSpace.c
490	./jkOwnLib/bandExt.c
572	./jkOwnLib/gfPcrLib.c
2256	./jkOwnLib/genoFind.c
435	./jkOwnLib/ffAliHelp.c
1614	./jkOwnLib/gfBlatLib.c
142	./jkOwnLib/gfInternal.c
878	./jkOwnLib/crudeali.c
92	./jkOwnLib/gfWebLib.c
223	./jkOwnLib/gfClientLib.c
1523	./jkOwnLib/fuzzyFind.c
913	./jkOwnLib/supStitch.c
579	./jkOwnLib/gfOut.c
78	./jkOwnLib/ooc.c
472	./jkOwnLib/xensmall.c
116	./jkOwnLib/tests/freen/freen.c
152	./jkOwnLib/splix.c
1224	./jkOwnLib/xenbig.c
148	./index/makepgo/makepgo.c
52	./index/ixword1/ixword1.c
52	./index/ixword3/ixword3.c
64	./index/fofFa/fofFa.c
80	./index/indexfa/indexfa.c
62	./index/indexgl/indexgl.c
49	./index/bptLookupStringToBits64/bptLookupStringToBits64.c
99	./index/indexRa/indexRa.c
53	./index/ixxenost/ixxenost.c
262	./index/ixIxx/ixIxx.c
92	./index/bptForTwoBit/bptForTwoBit.c
111	./index/stToXao/stToXao.c
51	./index/ixali/ixali.c
121	./index/bptMakeStringToBits64/bptMakeStringToBits64.c
132	./xenoAli/blastStats/blastStats.c
133	./xenoAli/topOnes/topOnes.c
448	./xenoAli/synteny/synteny.c
336	./xenoAli/lumpRep/lumpRep.c
205	./xenoAli/xaShow/xaShow.c
38	./xenoAli/stitcher/stitcher.c
1038	./xenoAli/newIntron/newIntron.c
454	./xenoAli/waba/waba.c
112	./xenoAli/waba/wabaCrude.c
89	./xenoAli/strainLumps/strainLumps.c
184	./xenoAli/filtRep/filtRep.c
320	./xenoAli/countSym/countSym.c
496	./xenoAli/dynAlign/affiAli.c
379	./xenoAli/dynAlign/dynAlign.c
268	./xenoAli/smithWat/smithWat.c
67	./xenoAli/xenWorm/xenWorm.c
496	./xenoAli/aliStats/aliStats.c
219	./xenoAli/bwana/bwana.c
113	./shortReads/itsaDump/itsaDump.c
269	./shortReads/sufaFind/sufaFind.c
205	./shortReads/shortRepeatFind/shortRepeatFind.c
238	./shortReads/elandToSplat/elandToSplat.c
481	./shortReads/sufxMake/sufxMake.c
372	./shortReads/splatTestSet/splatTestSet.c
91	./shortReads/bwtReverse/bwtReverse.c
67	./shortReads/sufxDump/sufxDump.c
283	./shortReads/splatToEland/splatToEland.c
181	./shortReads/i16Find/i16Dump.c
183	./shortReads/i16Find/i16.c
171	./shortReads/i16Find/i16Find.c
411	./shortReads/i16Make/i16Make.c
369	./shortReads/splixMake/splixMake.c
1150	./shortReads/splat/splat.c
73	./shortReads/splat/over.c
261	./shortReads/splat/extend.c
309	./shortReads/splat/output.c
131	./shortReads/shortRepeatMerge/shortRepeatMerge.c
289	./shortReads/sufxFind/sufxFind.c
122	./shortReads/bwtFind/bwtFind.c
180	./shortReads/bfastMafFix/bfastMafFix.c
284	./shortReads/itsaFind/itsaFind.c
143	./shortReads/splatCheck2/splatCheck2.c
190	./shortReads/splatMerge/splatMerge.c
83	./shortReads/sufaRepeatFind/sufaRepeatFind.c
217	./shortReads/streamer/streamer.c
112	./shortReads/bwtMake/bwtMake.c
138	./shortReads/splatCheck1/splatCheck1.c
334	./shortReads/sufaMake/sufaMake.c
515	./shortReads/itsaMake/itsaMake.c
1558	./aladdin/aladdin/aladdin.c
482	./lib/memalloc.c
186	./lib/genomeRangeTree.c
0	./lib/alpha/placeHolder.c
99	./lib/oswin9x.c
49	./lib/servcis.c
220	./lib/rnautil.c
554	./lib/xp.c
137	./lib/jpegSize.c
145	./lib/spaceSaver.c
385	./lib/https.c
51	./lib/vGfx.c
50	./lib/servcl.c
182	./lib/dnaseq.c
192	./lib/hmmPfamParse.c
229	./lib/snofmake.c
281	./lib/xAli.c
36	./lib/seqStats.c
719	./lib/trix.c
240	./lib/dnaMarkov.c
363	./lib/asParse.c
64	./lib/vGif.c
80	./lib/xmlEscape.c
718	./lib/hash.c
581	./lib/fof.c
477	./lib/gff.c
214	./lib/bwgValsOnChrom.c
75	./lib/jointalign.c
240	./lib/kxTok.c
561	./lib/rudp.c
49	./lib/hmmstats.c
305	./lib/gifcomp.c
425	./lib/font/mgHelveticaBold12.c
113	./lib/font/mgSail8.c
286	./lib/font/mgHelveticaBold8.c
1123	./lib/font/mgCourier24.c
211	./lib/font/mgSixhi6.c
425	./lib/font/mgTimes12.c
2229	./lib/font/mgHelvetica34.c
1194	./lib/font/mgTimes24.c
325	./lib/font/mgTimes10.c
336	./lib/font/mgHelvetica10.c
274	./lib/font/mgCourier8.c
279	./lib/font/mgHelvetica8.c
765	./lib/font/mgTimes18.c
432	./lib/font/mgHelvetica12.c
735	./lib/font/mgCourier14.c
884	./lib/font/mgHelveticaBold18.c
528	./lib/font/mgHelvetica14.c
365	./lib/font/mgCourier12.c
1246	./lib/font/mgHelvetica24.c
257	./lib/font/mgTimes8.c
300	./lib/font/mgCourier10.c
2271	./lib/font/mgHelveticaBold34.c
501	./lib/font/mgTimes14.c
346	./lib/font/mgHelveticaBold10.c
846	./lib/font/mgHelvetica18.c
2162	./lib/font/mgCourier34.c
580	./lib/font/mgHelveticaBold14.c
1963	./lib/font/mgTimes34.c
876	./lib/font/mgCourier18.c
1278	./lib/font/mgHelveticaBold24.c
154	./lib/intExp.c
889	./lib/maf.c
318	./lib/pslShow.c
782	./lib/axtAffine.c
649	./lib/fa.c
453	./lib/chainBlock.c
124	./lib/errCatch.c
671	./lib/pipeline.c
313	./lib/boxClump.c
281	./lib/bits.c
201	./lib/gemfont.c
437	./lib/mgPolygon.c
123	./lib/chainToPsl.c
642	./lib/osunix.c
1039	./lib/axt.c
347	./lib/pslGenoShow.c
171	./lib/repMask.c
344	./lib/log.c
126	./lib/sqlNum.c
693	./lib/bamUdc.c
48	./lib/servBrcMcw.c
146	./lib/sufx.c
183	./lib/xap.c
230	./lib/xa.c
898	./lib/blastParse.c
122	./lib/chainToAxt.c
440	./lib/bPlusTree.c
1188	./lib/memgfx.c
397	./lib/bwgQuery.c
517	./lib/nib.c
25	./lib/snofsig.c
33	./lib/slog.c
80	./lib/mgCircle.c
1075	./lib/twoBit.c
135	./lib/spacedColumn.c
558	./lib/cirTree.c
153	./lib/mafScore.c
244	./lib/peakCluster.c
366	./lib/ra.c
268	./lib/histogram.c
646	./lib/oldGff.c
103	./lib/numObscure.c
317	./lib/errabort.c
688	./lib/mime.c
392	./lib/gifdecomp.c
154	./lib/subText.c
22	./lib/gfNet.c
117	./lib/wildcmp.c
301	./lib/dlist.c
294	./lib/snof.c
160	./lib/internet.c
214	./lib/tokenizer.c
0	./lib/ppc/placeHolder.c
154	./lib/gdf.c
103	./lib/pthreadWrap.c
131	./lib/filePath.c
251	./lib/dystring.c
478	./lib/cda.c
187	./lib/itsa.c
78	./lib/mafFromAxt.c
260	./lib/hacTree.c
220	./lib/qa.c
99	./lib/gifwrite.c
1312	./lib/basicBed.c
88	./lib/regexHelper.c
86	./lib/pslTbl.c
230	./lib/tabRow.c
2009	./lib/psl.c
3400	./lib/common.c
817	./lib/pscmGfx.c
102	./lib/intValTree.c
21	./lib/fixColor.c
103	./lib/rle.c
123	./lib/nibTwo.c
220	./lib/dgRange.c
151	./lib/rainbow.c
419	./lib/phyloTree.c
841	./lib/vcf.c
209	./lib/apacheLog.c
831	./lib/blastOut.c
325	./lib/pslTransMap.c
112	./lib/flydna.c
2140	./lib/cheapcgi.c
66	./lib/vPng.c
50	./lib/psPoly.c
398	./lib/crTree.c
187	./lib/gifread.c
116	./lib/pngwrite.c
148	./lib/codebias.c
235	./lib/splatAli.c
334	./lib/rangeTree.c
163	./lib/localmem.c
261	./lib/nt4.c
186	./lib/ffAli.c
197	./lib/quickHeap.c
164	./lib/textOut.c
1115	./lib/bwgCreate.c
334	./lib/oligoTm.c
185	./lib/metaWig.c
213	./lib/ffScore.c
45	./lib/servpws.c
393	./lib/binRange.c
65	./lib/xenshow.c
352	./lib/gapCalc.c
81	./lib/shaRes.c
586	./lib/bbiWrite.c
0	./lib/i386/placeHolder.c
331	./lib/seqOut.c
741	./lib/rbTree.c
49	./lib/colHash.c
1199	./lib/linefile.c
137	./lib/portimpl.c
765	./lib/rqlParse.c
0	./lib/x86_64/placeHolder.c
160	./lib/boxLump.c
0	./lib/i686/placeHolder.c
301	./lib/dnaLoad.c
473	./lib/seg.c
31	./lib/aliType.c
129	./lib/verbose.c
102	./lib/gifLabel.c
46	./lib/servmsII.c
87	./lib/knetUdc.c
421	./lib/options.c
130	./lib/base64.c
396	./lib/tests/udcTest.c
81	./lib/tests/fetchUrlTest.c
56	./lib/tests/errCatchTest.c
318	./lib/tests/mimeTester.c
57	./lib/tests/testQuotedString.c
275	./lib/tests/pipelineTester.c
114	./lib/tests/tabixFetch.c
174	./lib/tests/safeTester.c
43	./lib/tests/htmlPageTest.c
44	./lib/tests/testBase64.c
31	./lib/tests/gff3Tester.c
260	./lib/tests/hacTreeTest.c
369	./lib/tests/mimeDecodeTest.c
26	./lib/tests/miniBlat.c
81	./lib/tests/testHash.c
259	./lib/tests/htmlExpandUrlTest.c
60	./lib/tests/vcfParseTest.c
94	./lib/tests/htmlMimeTest.c
101	./lib/tests/dyStringTester.c
22	./lib/tests/testQuotedP.c
347	./lib/pairHmm.c
739	./lib/diGraph.c
629	./lib/dnaMotif.c
645	./lib/chain.c
588	./lib/htmshell.c
410	./lib/psGfx.c
157	./lib/emblParse.c
559	./lib/keys.c
288	./lib/md5.c
367	./lib/chainConnect.c
1178	./lib/sqlList.c
115	./lib/quotedP.c
407	./lib/fuzzyShow.c
50	./lib/gfxPoly.c
333	./lib/rqlEval.c
738	./lib/bbiRead.c
52	./lib/servCrunx.c
467	./lib/dtdParse.c
1213	./lib/wormdna.c
66	./lib/spacedSeed.c
1091	./lib/gff3.c
91	./lib/zlibFace.c
0	./lib/sparc/placeHolder.c
48	./lib/scoreWindow.c
142	./lib/sufa.c
108	./lib/synQueue.c
2591	./lib/net.c
78	./lib/correlate.c
231	./lib/bigBed.c
1811	./lib/htmlPage.c
738	./lib/obscure.c
1596	./lib/udc.c
1126	./lib/dnautil.c
38	./stats/countUpc/countUpc.c
440	./stats/codons/codons.c
128	./stats/mark0_1/mark0_1.c
63	./stats/randMod/randMod.c
212	./olly/sampleToWig/sampleToWig.c
421	./olly/ollySlow/ollySlow.c
499	./olly/olly.c
152	./olly/checkSeed/checkSeed.c
1824	./idbQuery/idbQuery.c
267	./cdnaAli/yeastInt/yeastInt.c
769	./cdnaAli/aliGlue/aliGlue.c
991	./cdnaAli/patSpace/findHits.c
867	./cdnaAli/patSpace/patSpace.c
820	./cdnaAli/patSpace/glueBacs.c
145	./cdnaAli/patSpace/testRes.c
1557	./cdnaAli/patSpace/ps01.c
1080	./cdnaAli/patSpace/ps02.c
690	./cdnaAli/sortFilt/sortFilt.c
175	./cdnaAli/ali2alx/ali2alx.c
750	./cdnaAli/introns/introns.c
369	./cdnaAli/lib/cdnaAli.c
164	./cdnaAli/findCdna/findCdna.c
134	./cdnaAli/cdnaOff/cdnaOff.c
140	./cdnaAli/binGood/binGood.c
431	./cdnaAli/c2gCheck/g2cCheck.c
244	./cdnaAli/patCount/patCount.c
386	./cdnaAli/pairClo/pairClo.c
164	./cdnaAli/stitchea/stitchea.c
344	./cdnaAli/goldgff/goldgff.c
1567	./cdnaAli/refineAli/refineAli.c
970	./cdnaAli/exonAli/exonAli.c
914	./cdnaAli/genieCon/genieCon.c
473	./cdnaAli/cluster/cluster.c
431	./cdnaAli/g2cCheck/g2cCheck.c
1184	./hg/hgTablesTest/hgTablesTest.c
79	./hg/hgsqlSwapTables/hgsqlSwapTables.c
267	./hg/pslCheck/pslCheck.c
61	./hg/useCount/useCount.c
167	./hg/utils/refSeqGet/refSeqVerInfo.c
273	./hg/utils/refSeqGet/refSeqGet.c
270	./hg/utils/mdbQuery/mdbQuery.c
98	./hg/utils/hubCheck/hubCheck.c
221	./hg/utils/bedMergeExpData/bedMergeExpData.c
300	./hg/utils/toDev64/toDev64.c
497	./hg/utils/cageSingleTrack/cageSingleTrack.c
202	./hg/utils/findCutters/findCutters.c
86	./hg/utils/overlapSelect/coordCols.c
329	./hg/utils/overlapSelect/selectTable.c
561	./hg/utils/overlapSelect/chromAnn.c
105	./hg/utils/overlapSelect/chromAnnMap.c
482	./hg/utils/overlapSelect/overlapSelect.c
92	./hg/utils/overlapSelect/rowReader.c
67	./hg/utils/crTreeSearchBed/crTreeSearchBed.c
444	./hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
243	./hg/utils/repeatSelect/repeatSelect.c
61	./hg/utils/repeatSelect/repeatGroup.c
37	./hg/utils/repeatSelect/bitHash.c
58	./hg/utils/repeatSelect/rmskOutExtra.c
104	./hg/utils/tdbQuery/tdbRecord.c
1359	./hg/utils/tdbQuery/tdbQuery.c
141	./hg/utils/agpCondense/agpCondense.c
140	./hg/utils/bedWeedOverlapping/bedWeedOverlapping.c
202	./hg/utils/randFrag/randFrag.c
261	./hg/utils/motifFinder/motifFinder.c
310	./hg/utils/gff3ToGenePred/gff3ToGenePred.c
115	./hg/utils/rgdGeneXref2/rgdGeneXref2.c
174	./hg/utils/wigBedToStep/wigBedToStep.c
301	./hg/utils/liftUpBedFromTable/liftUpBedFromTable.c
398	./hg/utils/safePush/safePush.c
312	./hg/utils/pslMap/pslMap.c
140	./hg/utils/bedMergeOverlappingBlocks/bedMergeOverlappingBlocks.c
125	./hg/utils/bedToPsl/bedToPsl.c
64	./hg/utils/chromGraphFromBin/chromGraphFromBin.c
206	./hg/utils/bedExtendRanges/bedExtendRanges.c
1212	./hg/utils/mutationClassifier/mutationClassifier.c
195	./hg/utils/wigAsciiAverageOverBed/wigAsciiAverageOverBed.c
141	./hg/utils/fiveCToBed/fiveCToBed.c
274	./hg/utils/twoBitMask/twoBitMask.c
193	./hg/utils/gtfToGenePred/gtfToGenePred.c
43	./hg/utils/chromGraphToBin/chromGraphToBin.c
99	./hg/utils/positionalTblCheck/positionalTblCheck.c
196	./hg/utils/gff3ToPsl/gff3ToPsl.c
151	./hg/utils/makeTrackIndex/makeTrackIndex.c
157	./hg/utils/coloredExonToBed/coloredExonToBed.c
238	./hg/utils/coloredExonToBed/coloredExon.c
36	./hg/utils/sqlPerf/sqlPerf.c
97	./hg/utils/reTraceUtils/reTraceFixMaf/reTraceFixMaf.c
144	./hg/utils/oligoMatch/oligoMatch.c
116	./hg/utils/makeTableList/makeTableList.c
86	./hg/utils/crTreeIndexBed/crTreeIndexBed.c
291	./hg/utils/gapToLift/gapToLift.c
56	./hg/utils/pslUniq/pslUniq.c
136	./hg/utils/hubPublicCheck/hubPublicCheck.c
336	./hg/sim4big/sim4big.c
64	./hg/fakeOut/fakeOut.c
82	./hg/hgSuggest/hgSuggest.c
359	./hg/pslCoverage/pslCoverage.c
71	./hg/var/fixConrad.c
61	./hg/hgPal/hgPal.c
48	./hg/pslCDnaFilter/globalNearBestFilter.c
478	./hg/pslCDnaFilter/hapRegions.c
264	./hg/pslCDnaFilter/overlapFilter.c
176	./hg/pslCDnaFilter/polyASize.c
384	./hg/pslCDnaFilter/cDnaAligns.c
100	./hg/pslCDnaFilter/localNearBestFilter.c
454	./hg/pslCDnaFilter/pslCDnaFilter.c
68	./hg/pslCDnaFilter/cDnaStats.c
97	./hg/pslCDnaFilter/cDnaReader.c
534	./hg/hgGetAnn/hgGetAnn.c
134	./hg/raSort/raSort.c
1540	./hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c
149	./hg/pslRecalcMatch/pslRecalcMatch.c
89	./hg/makeSeqs/makeSeqs.c
102	./hg/pslSimp/pslSimp.c
81	./hg/hgNotYet/hgNotYet.c
174	./hg/relPairs/relPairs.c
215	./hg/pslCrudeCmp/pslCrudeCmp.c
147	./hg/bedSplitOnChrom/bedSplitOnChrom.c
326	./hg/semiNorm/semiNorm.c
100	./hg/intronSizes/intronSizes.c
23	./hg/hgsqladmin/hgsqladmin.c
111	./hg/genePredToMrna/genePredToMrna.c
39	./hg/hgsqlLocal/hgsqlLocal.c
436	./hg/genePredToGtf/genePredToGtf.c
110	./hg/ratStuff/multizzy/multizzy.c
380	./hg/ratStuff/mafAddQRows/mafAddQRows.c
772	./hg/ratStuff/mafToAnc/mafToAnc.c
313	./hg/ratStuff/mafFilter/mafFilter.c
518	./hg/ratStuff/segExpandToAnchors/segExpandToAnchors.c
382	./hg/ratStuff/mafSplit/mafSplit.c
636	./hg/ratStuff/mafAddIRows/mafAddIRows.c
206	./hg/ratStuff/mafsInRegion/mafsInRegion.c
130	./hg/ratStuff/segSplitPairwise/segSplitPairwise.c
75	./hg/ratStuff/mafMeFirst/mafMeFirst.c
161	./hg/ratStuff/faToMaf/faToMaf.c
172	./hg/ratStuff/mafFastFrags/mafFastFrags.c
975	./hg/ratStuff/mafToProtein/mafToProtein.c
259	./hg/ratStuff/mafFrags/mafFrags.c
346	./hg/ratStuff/stageMultiz/stageMultiz.c
81	./hg/ratStuff/mafOrder/mafOrder.c
71	./hg/ratStuff/mafSpeciesList/mafSpeciesList.c
167	./hg/ratStuff/mafStats/mafStats.c
265	./hg/ratStuff/mafGene/mafGene.c
74	./hg/ratStuff/mafFrag/mafFrag.c
111	./hg/ratStuff/mafSpeciesSubset/mafSpeciesSubset.c
197	./hg/ratStuff/mafSplitPos/mafSplitPos.c
355	./hg/ratStuff/mafOrtholog/mafOrtholog.c
450	./hg/ratStuff/mafBreak/mafBreak.c
53	./hg/ratStuff/mafIndex/mafIndex.c
312	./hg/ratStuff/segInfo/segInfo.c
244	./hg/ratStuff/mafBedSubset/mafBedSubset.c
216	./hg/perf/hgTracksRandom.c
90	./hg/perf/rangeQuery.c
750	./hg/xmlToSql/xmlToSql.c
77	./hg/xmlToSql/tables.c
92	./hg/xmlToSql/rename.c
52	./hg/xmlToSql/elStat.c
140	./hg/fqToQa/fqToQa.c
262	./hg/pslFilterBadCdna/pslFilterBadCdna.c
421	./hg/genePredToMafFrames/orgGenes.c
345	./hg/genePredToMafFrames/mkMafFrames.c
159	./hg/genePredToMafFrames/finishMafFrames.c
179	./hg/genePredToMafFrames/genePredToMafFrames.c
170	./hg/genePredToMafFrames/splitMultiMappings.c
125	./hg/borfBig/borfBig.c
97	./hg/xmlCat/xmlCat.c
283	./hg/bedOverlap/bedOverlap.c
164	./hg/pdbSP/pdbSP.c
219	./hg/fakeFinContigs/fakeFinContigs.c
120	./hg/pslUnpile/pslUnpile.c
195	./hg/extractPslForLfs/extractPslForLfs.c
82	./hg/hgNotAvail/hgNotAvail.c
723	./hg/pslPseudo/checkExp/checkExp.c
2671	./hg/pslPseudo/pslPseudo.c
70	./hg/agpCloneList/agpCloneList.c
40	./hg/autoSql/commonSh.c
72	./hg/autoSql/eztok.c
194	./hg/autoSql/tests/testHarness.c
118	./hg/autoSql/tests/testSymCols.c
114	./hg/autoSql/tests/jsonTest.c
327	./hg/autoSql/tests/dbLinkTest.c
434	./hg/autoSql/tests/expected/newTest.c
859	./hg/autoSql/tests/expected/mainTest.c
336	./hg/autoSql/tests/expected/doc.c
1037	./hg/autoSql/tests/expected/simpleTest.c
447	./hg/autoSql/tests/expected/hardTest.c
622	./hg/autoSql/tests/expected/doc2.c
428	./hg/autoSql/tests/expected/polyTest.c
134	./hg/autoSql/tests/expected/symTest.c
1837	./hg/autoSql/autoSql.c
157	./hg/genoPheno/gpShuffleData/gpShuffleData.c
417	./hg/genoPheno/gpFakeData/gpFakeData.c
453	./hg/pslFilterPrimers/pslFilterPrimers.c
118	./hg/sage/addAveMedScoreToPsls.c
257	./hg/sage/createSageSummary.c
272	./hg/pslSplit/pslSplit.c
75	./hg/cgiExample/cgiExample.c
990	./hg/hgCoordConv/hgCoordConv.c
172	./hg/pslDist/pslDist.c
235	./hg/checkCoverageGaps/checkCoverageGaps.c
125	./hg/pslSplitOnTarget/pslSplitOnTarget.c
129	./hg/fqToQac/fqToQac.c
417	./hg/checkHgFindSpec/checkHgFindSpec.c
224	./hg/hgCert/hgCert.c
932	./hg/featureBits/featureBits.c
504	./hg/wikiPlot/wikiPlot.c
243	./hg/gigAssembler/g2gSeqOverlap/g2gSeqOverlap.c
72	./hg/gigAssembler/checkPsl/checkPsl.c
335	./hg/gigAssembler/ooChains/ooChains.c
495	./hg/gigAssembler/ooLiftSpec/ooLiftSpec.c
121	./hg/gigAssembler/checkGoldDupes/checkGoldDupes.c
142	./hg/gigAssembler/checkNt/checkNt.c
424	./hg/gigAssembler/checkAgpAndFa/checkAgpAndFa.c
66	./hg/gigAssembler/ooCloneSizes/ooCloneSizes.c
248	./hg/gigAssembler/makePai/makePai.c
6635	./hg/gigAssembler/ooGreedy/bak/ooGreedy.c
4551	./hg/gigAssembler/ooGreedy/bak/ooGreedy.39.c
374	./hg/gigAssembler/ooGreedy/getgene/getgene.c
92	./hg/gigAssembler/ooGreedy/protDust/protDust.c
5485	./hg/gigAssembler/ooGreedy/ooGreedy.c
525	./hg/gigAssembler/ooGreedy/primeMate/primeMate.c
381	./hg/gigAssembler/ooGreedy/scanIntrons/scanIntrons.c
162	./hg/gigAssembler/ooSplitFins/ooSplitFins.c
594	./hg/gigAssembler/ooCloneOverlaps/ooCloneOverlaps.c
1340	./hg/gigAssembler/codJobs/jabba/jabba.c
376	./hg/gigAssembler/codJobs/jabba/jobDb.c
560	./hg/gigAssembler/cmpMap/cmpMap.c
100	./hg/gigAssembler/ooCloneSpan/ooCloneSpan.c
180	./hg/gigAssembler/ooCloneInfo/ooCloneInfo.c
362	./hg/gigAssembler/checkYbr/checkYbr.c
417	./hg/gigAssembler/pairedReads/ppWashU/ppWashU.c
741	./hg/gigAssembler/pairedReads/ppAnalyse/ppAnalyse.c
741	./hg/gigAssembler/pairedReads/ppWhitehead/ppWhitehead.c
411	./hg/gigAssembler/pairedReads/ppStats/ppStats.c
108	./hg/gigAssembler/pairedReads/ppStats/pPair.c
102	./hg/gigAssembler/pairedReads/ppSanger/sangRead.c
155	./hg/gigAssembler/pairedReads/ppSanger/ppSanger.c
88	./hg/gigAssembler/pairedReads/ppSanger/sangInsert.c
91	./hg/gigAssembler/pairedReads/ppSanger/sangRange.c
219	./hg/gigAssembler/g2gOverlap/g2gOverlap.c
1414	./hg/gigAssembler/barger/barger.c
197	./hg/gigAssembler/ooWeedZero/ooWeedZero.c
133	./hg/gigAssembler/cmParse/imreClone.c
1453	./hg/gigAssembler/cmParse/cmParse.c
400	./hg/gigAssembler/ooCloneEnds/ooCloneEnds.c
347	./hg/gigAssembler/mm/ooMapMend/ooMapMend.c
336	./hg/gigAssembler/mm/mmTestSet/mmTestSet.c
473	./hg/gigAssembler/mm/checkEnds/checkEnds.c
2654	./hg/gigAssembler/mm/mm/mm.c
3013	./hg/gigAssembler/mendMap/mendMap.c
70	./hg/gigAssembler/checkOut/checkOut.c
470	./hg/gigAssembler/ntGoldGl/ntGoldGl.c
149	./hg/gigAssembler/checkDbSync/checkDbSync.c
1867	./hg/gigAssembler/gapper/gapper.c
95	./hg/gigAssembler/checkQa/checkQa.c
68	./hg/gigAssembler/checkN/checkN.c
356	./hg/gigAssembler/ooNtInput/ooNtInput.c
219	./hg/gigAssembler/qaGold/qaGold.c
248	./hg/gigAssembler/ooTester/ooTester.c
193	./hg/gigAssembler/goldToAgp/goldToAgp.c
240	./hg/gigAssembler/conJobs/cdnaOnOoJobs/cdnaOnOoJobs.c
120	./hg/gigAssembler/conJobs/rmskOoJobs/rmskOoJobs.c
167	./hg/gigAssembler/conJobs/patJobs/opatJobs.c
176	./hg/gigAssembler/conJobs/patJobs/patJobs.c
29	./hg/gigAssembler/conJobs/pslGenoJobs/test.c
39	./hg/gigAssembler/conJobs/pslGenoJobs/makeFix.c
124	./hg/gigAssembler/conJobs/pslGenoJobs/pslGenoJobs.c
114	./hg/gigAssembler/conJobs/repMaskJobs/repMaskJobs.c
245	./hg/gigAssembler/conJobs/pslOoJobs/pslOoJobs.c
216	./hg/gigAssembler/conJobs/pslSelfJobs/pslSelfJobs.c
574	./hg/gigAssembler/psLayout/psLayout.c
113	./hg/gigAssembler/psLayout/cruft/chkSym.c
202	./hg/gigAssembler/psLayout/cruft/psLayHit.c
184	./hg/maskOutFa/maskOutFa.c
118	./hg/cartDump/cartDump.c
2127	./hg/pslAnal/pslAnal.c
398	./hg/pslSort/pslSort.c
179	./hg/recycleDb/bedDown/bedDown.c
301	./hg/recycleDb/bedUp/bedUp.c
134	./hg/genePredSingleCover/geneScore.c
245	./hg/genePredSingleCover/genePredSingleCover.c
221	./hg/agpSangerUnfinished/agpSangerUnfinished.c
562	./hg/liftAcross/liftAcross.c
1267	./hg/sageVisCGI/gnuPlot2D.c
1072	./hg/sageVisCGI/rosChr22Dat.c
784	./hg/sageVisCGI/gnuplot_i.c
278	./hg/sageVisCGI/sageVisCGI.c
397	./hg/mrnaToGene/mrnaToGene.c
399	./hg/txCds/txCdsEvFromBed/txCdsEvFromBed.c
499	./hg/txCds/txCdsPredict/txCdsPredict.c
148	./hg/txCds/txCdsRedoUniprotPicks/txCdsRedoUniprotPicks.c
378	./hg/txCds/txCdsOrtho/txCdsOrtho.c
422	./hg/txCds/txCdsToGene/txCdsToGene.c
79	./hg/txCds/txCdsEvFromBorf/txCdsEvFromBorf.c
334	./hg/txCds/txCdsSvmInput/txCdsSvmInput.c
353	./hg/txCds/txCdsRepick/txCdsRepick.c
389	./hg/txCds/txCdsEvFromRna/txCdsEvFromRna.c
61	./hg/txCds/txCdsRaExceptions/txCdsRaExceptions.c
446	./hg/txCds/txCdsEvFromProtein/txCdsEvFromProtein.c
68	./hg/txCds/txCdsRefBestEvOnly/txCdsRefBestEvOnly.c
155	./hg/txCds/txCdsBadBed/txCdsBadBed.c
161	./hg/txCds/txCdsGoodBed/txCdsGoodBed.c
348	./hg/txCds/txCdsCluster/txCdsCluster.c
135	./hg/txCds/txCdsOrfInfo/txCdsOrfInfo.c
294	./hg/txCds/txCdsPick/txCdsPick.c
78	./hg/txCds/txCdsWeed/txCdsWeed.c
506	./hg/txCds/txInfoAssemble/txInfoAssemble.c
381	./hg/txCds/txCdsSuspect/txCdsSuspect.c
203	./hg/getRna/getRna.c
854	./hg/hgc/mgcClick.c
833	./hg/hgc/retroClick.c
176	./hg/hgc/t2g.c
582	./hg/hgc/wikiTrack.c
617	./hg/hgc/gencodeClick.c
624	./hg/hgc/virusClick.c
3898	./hg/hgc/lowelab.c
439	./hg/hgc/hgdpClick.c
700	./hg/hgc/peakClusters.c
259	./hg/hgc/transMapClick.c
245	./hg/hgc/bamClick.c
444	./hg/hgc/variomeClick.c
246	./hg/hgc/encodeClick.c
434	./hg/hgc/ccdsClick.c
132	./hg/hgc/bigBedClick.c
25020	./hg/hgc/hgc.c
83	./hg/hgc/makeItemsClick.c
228	./hg/hgc/dbRIP.c
491	./hg/hgc/expClick.c
657	./hg/hgc/regMotif.c
448	./hg/hgc/rnaFoldClick.c
289	./hg/hgc/txCdsInfo.c
277	./hg/hgc/wiggleClick.c
1315	./hg/hgc/mafClick.c
150	./hg/hgc/parClick.c
218	./hg/hgc/cgapSageClick.c
303	./hg/hgc/vcfClick.c
90	./hg/hgc/gvfClick.c
91	./hg/qacAddGapIdx/qacAddGapIdx.c
490	./hg/getRnaPred/getRnaPred.c
240	./hg/hgTables/asFilter.c
213	./hg/hgTables/great.c
132	./hg/hgTables/maf.c
105	./hg/hgTables/rangeHistogram.c
129	./hg/hgTables/wikiTrack.c
326	./hg/hgTables/userRegions.c
1882	./hg/hgTables/filterFields.c
1249	./hg/hgTables/wiggle.c
417	./hg/hgTables/bam.c
765	./hg/hgTables/intersect.c
682	./hg/hgTables/schema.c
1017	./hg/hgTables/mainPage.c
831	./hg/hgTables/bedList.c
1935	./hg/hgTables/hgTables.c
375	./hg/hgTables/bigWig.c
141	./hg/hgTables/galaxy.c
780	./hg/hgTables/correlatePlot.c
1200	./hg/hgTables/joining.c
113	./hg/hgTables/asObj.c
623	./hg/hgTables/custom.c
310	./hg/hgTables/seqOut.c
140	./hg/hgTables/usage.c
299	./hg/hgTables/compositeTrack.c
319	./hg/hgTables/gffOut.c
90	./hg/hgTables/pal.c
386	./hg/hgTables/sumStats.c
41	./hg/hgTables/microarrayTables.c
116	./hg/hgTables/chromGraph.c
2579	./hg/hgTables/correlate.c
372	./hg/hgTables/bigBed.c
566	./hg/hgTables/identifiers.c
213	./hg/snp/fixedDiffs/fixedDiffs.c
101	./hg/snp/findSnpClusters/findSnpClusters.c
664	./hg/snp/snpMask/snpMaskFlank.c
652	./hg/snp/snpMask/snpMask.c
113	./hg/snp/snpMask/seqWithoutDeletions.c
128	./hg/snp/snpMask/snpMaskAddInsertions.c
258	./hg/snp/snpMask/snpMaskSingle.c
128	./hg/snp/snpMask/seqWithInsertions.c
705	./hg/snp/snpMask/snpMaskFlankSubset.c
419	./hg/snp/snpMask/snpMaskGenes.c
170	./hg/snp/snpMask/snpMapToExon.c
310	./hg/snp/snpMask/snpMaskChrom.c
128	./hg/snp/snpMask/snpMaskCutDeletions.c
495	./hg/snp/details/dbSnp.c
922	./hg/snp/snpValid/snpValid.c
995	./hg/snp/snpValid/snpValidOld.c
686	./hg/snp/tajD/tajD.c
243	./hg/snp/pbToAlleleCounts/pbToAlleleCounts.c
331	./hg/snp/snpLoad/illuminaLookup.c
241	./hg/snp/snpLoad/snpSort.c
199	./hg/snp/snpLoad/snpGetSimple.c
348	./hg/snp/snpLoad/snpExpandAllele.c
158	./hg/snp/snpLoad/snpContigLocusIdCondense.c
69	./hg/snp/snpLoad/snpCleanSeq.c
141	./hg/snp/snpLoad/snpContigLocusIdFilter.c
251	./hg/snp/snpLoad/snpCompareWeight.c
265	./hg/snp/snpLoad/snpReadFasta.c
323	./hg/snp/snpLoad/snpClassAndObserved.c
150	./hg/snp/snpLoad/cnpLookup.c
86	./hg/snp/snpLoad/snpGetSeqDup.c
131	./hg/snp/snpLoad/snpMissing.c
59	./hg/snp/snpLoad/snpReadSeq2.c
245	./hg/snp/snpLoad/snpCompare.c
128	./hg/snp/snpLoad/snpOrtho.c
327	./hg/snp/snpLoad/snpCheckClassAndObserved.c
354	./hg/snp/snpLoad/hapmapLookup.c
115	./hg/snp/snpLoad/snpExceptionCheck.c
138	./hg/snp/snpLoad/subSnpCondense.c
415	./hg/snp/snpLoad/snpCompareLoctype.c
282	./hg/snp/snpLoad/snpLocType125.c
126	./hg/snp/snpLoad/snpOrthoLookup.c
228	./hg/snp/snpLoad/affyCheck.c
153	./hg/snp/snpLoad/snpSplitByChrom2.c
134	./hg/snp/snpLoad/snpCheckCluster2.c
211	./hg/snp/snpLoad/hapmap1.c
230	./hg/snp/snpLoad/snpCheckCluster.c
153	./hg/snp/snpLoad/snpFreq.c
181	./hg/snp/snpLoad/snpFunction.c
362	./hg/snp/snpLoad/hapmapValidate.c
90	./hg/snp/snpLoad/fetchSeq.c
53	./hg/snp/snpLoad/trimHeader.c
104	./hg/snp/snpLoad/hapmapMixed.c
180	./hg/snp/snpLoad/snpSplitSimple.c
220	./hg/snp/snpLoad/snpSNP.c
425	./hg/snp/snpLoad/snpLoadFromTmp.c
114	./hg/snp/snpLoad/snpCheckAlleles.c
296	./hg/snp/snpLoad/snpContigLocFilter125.c
149	./hg/snp/snpLoad/illuminaLookup1M.c
193	./hg/snp/snpLoad/snpSplitByChrom.c
121	./hg/snp/snpLoad/snpPAR.c
186	./hg/snp/snpLoad/snpOrthoJoin.c
153	./hg/snp/snpLoad/snpCheckLocTypeSize.c
435	./hg/snp/snpLoad/snpSplit.c
238	./hg/snp/snpLoad/hapmapSummary.c
543	./hg/snp/snpLoad/snpLoad.c
2260	./hg/snp/snpLoad/snpNcbiToUcsc.c
295	./hg/snp/snpLoad/snpLocType.c
141	./hg/snp/snpLoad/snpContigLocusIdFilter125.c
131	./hg/snp/snpLoad/snpMultiple.c
233	./hg/snp/snpLoad/snpMoltype.c
230	./hg/snp/snpLoad/snpRefUCSC.c
143	./hg/snp/snpLoad/affyLookup.c
172	./hg/snp/snpLoad/snpFunctionCheck.c
620	./hg/snp/snpLoad/hapmap2.c
253	./hg/snp/snpLoad/hapmapPhaseIIISummary.c
297	./hg/snp/snpLoad/snpFinalTable.c
172	./hg/snp/snpLoad/snpGetInsertions.c
348	./hg/snp/snpLoad/snpExceptions.c
183	./hg/snp/snpLoad/snpLoadFasta.c
215	./hg/snp/snpLoad/illuminaLookup2.c
88	./hg/snp/snpLoad/snpReadSeq.c
329	./hg/snp/snpLoad/snpContigLocFilter.c
131	./hg/snp/snpLoad/hapmapOrtho.c
169	./hg/snp/snpLoad/snpGetDeletions.c
218	./hg/snp/snpLoad/snpOrthoStats.c
99	./hg/hgGene/dnaBindMotif.c
222	./hg/hgGene/info.c
171	./hg/hgGene/altSplice.c
410	./hg/hgGene/synonym.c
508	./hg/hgGene/wikiTrack.c
33	./hg/hgGene/method.c
461	./hg/hgGene/otherOrgs.c
109	./hg/hgGene/go.c
398	./hg/hgGene/microarray.c
143	./hg/hgGene/ctd.c
98	./hg/hgGene/mrnaDescriptions.c
141	./hg/hgGene/localization.c
392	./hg/hgGene/flyBaseInfo.c
282	./hg/hgGene/links.c
405	./hg/hgGene/pathways.c
330	./hg/hgGene/rgdInfo.c
116	./hg/hgGene/pseudoGene.c
157	./hg/hgGene/gad.c
217	./hg/hgGene/rnaStructure.c
163	./hg/hgGene/swissProtComments.c
237	./hg/hgGene/sequence.c
701	./hg/hgGene/hgGene.c
244	./hg/hgGene/domains.c
3972	./hg/qaPushQ/qaPushQ.c
227	./hg/qacAgpLift/qacAgpLift.c
44	./hg/qaToQac/qaToQac.c
49	./hg/pslToBed/pslToBed.c
240	./hg/agpTweak/agpTweak.c
331	./hg/encode/metaCollect/metaCollect.c
521	./hg/encode/encodeExp/encodeExp.c
177	./hg/encode/regionOrtho/regionOrtho.c
384	./hg/encode/metaCheck/metaCheck.c
607	./hg/encode/hgEncodeScheduler/hgEncodeScheduler.c
891	./hg/encode/lib/encodePatchTdb.c
166	./hg/encode/lib/bedLogR.c
76	./hg/encode/docId/docIdReport/docIdReport.c
389	./hg/encode/docId/docIdSubmitDir/docIdSubmitDir.c
308	./hg/encode/docId/lib/docIdSub.c
267	./hg/encode/docId/docIdView/docIdView.c
202	./hg/encode/docId/docIdTidy/docIdTidy.c
335	./hg/encode/encodeMergeReplicates/encodeMergeReplicates.c
807	./hg/encode/hgEncodeVocab/hgEncodeVocab.c
207	./hg/encode/encodeMergeReplicatesBatch/encodeMergeReplicatesBatch.c
66	./hg/encode/encodePatchTdb/encodePatchTdb.c
83	./hg/encode/converters/pairedTagToBed12/pairedTagToBed12.c
82	./hg/encode/converters/tagToBed12/tagToBed12.c
360	./hg/encode/metaRename/metaRename.c
362	./hg/encode/validateCv/validateCv.c
228	./hg/encode/regionAgp/regionAgp.c
146	./hg/encode/hgEncodeDataVersions/hgEncodeDataVersions.c
1315	./hg/encode/encodeRenameObj/encodeRenameObj.c
1780	./hg/encode/validateFiles/validateFiles.c
83	./hg/encode/ldGencodeIntron/ldGencodeIntron.c
60	./hg/ccTrack/bedToBinDex/bedToBinDex.c
226	./hg/embossToPsl/embossToPsl.c
200	./hg/snpException/snpException.c
588	./hg/hgLiftOver/hgLiftOver.c
69	./hg/bedThickOnly/bedThickOnly.c
308	./hg/lfsOverlap/lfsOverlap.c
139	./hg/ctgFaToFa/ctgFaToFa.c
143	./hg/getallpep/getallpep.c
103	./hg/intronEnds/intronEnds.c
172	./hg/lib/kgXref.c
188	./hg/lib/transRegCodeProbe.c
268	./hg/lib/hgRelate.c
588	./hg/lib/oregannoOther.c
154	./hg/lib/sgdOther.c
129	./hg/lib/snpExtFile.c
70	./hg/lib/liftUp.c
161	./hg/lib/blastzNet.c
146	./hg/lib/ctgPos2.c
276	./hg/lib/fishClones.c
786	./hg/lib/featureBits.c
239	./hg/lib/affyTranscriptome.c
171	./hg/lib/hgdpGeo.c
278	./hg/lib/gwasCatalog.c
151	./hg/lib/geneBands.c
139	./hg/lib/rnaPLFold.c
144	./hg/lib/recombRateRat.c
177	./hg/lib/bacCloneXRef.c
137	./hg/lib/borkPseudoHom.c
154	./hg/lib/allpredictions.c
142	./hg/lib/simpleNucDiff.c
168	./hg/lib/gbSeq.c
189	./hg/lib/sangerGene.c
154	./hg/lib/arCOGs.c
200	./hg/lib/expData.c
215	./hg/lib/stsInfoMouse.c
345	./hg/lib/snp132Ext.c
293	./hg/lib/mammalPsg.c
131	./hg/lib/arcogdesc.c
161	./hg/lib/sageExp.c
243	./hg/lib/vcfUi.c
311	./hg/lib/hVarSubst.c
281	./hg/lib/chainNetDbLoad.c
403	./hg/lib/pseudoGeneLink.c
380	./hg/lib/stsMap.c
147	./hg/lib/cnpIafrate.c
163	./hg/lib/ensFace.c
1064	./hg/lib/riken.c
407	./hg/lib/trackTable.c
174	./hg/lib/exprBed.c
118	./hg/lib/agpGap.c
123	./hg/lib/ecAttributeCode.c
115	./hg/lib/sqlProg.c
142	./hg/lib/sgdClone.c
178	./hg/lib/agpFrag.c
162	./hg/lib/mouseOrtho.c
184	./hg/lib/tfbsConsMap.c
126	./hg/lib/gbExtFile.c
238	./hg/lib/affy10KDetails.c
204	./hg/lib/cnpSharpSample.c
134	./hg/lib/dvBed.c
203	./hg/lib/grp.c
232	./hg/lib/baseMaskCommon.c
219	./hg/lib/taxonGeneticCode.c
159	./hg/lib/stsMapMouse.c
297	./hg/lib/borf.c
228	./hg/lib/goa.c
257	./hg/lib/mafSummary.c
41	./hg/lib/hgColors.c
174	./hg/lib/switchDbTss.c
235	./hg/lib/dnaProbe.c
124	./hg/lib/cdsSpec.c
217	./hg/lib/ggDbRep.c
132	./hg/lib/tableDescriptions.c
152	./hg/lib/tfbsConsSites.c
132	./hg/lib/sgdDescription.c
140	./hg/lib/flyBaseSwissProt.c
2657	./hg/lib/jksql.c
304	./hg/lib/llaInfo.c
161	./hg/lib/gencodeGeneClass.c
1370	./hg/lib/joiner.c
683	./hg/lib/jsHelper.c
217	./hg/lib/columnInfo.c
1385	./hg/lib/ggGraph.c
268	./hg/lib/ccdsGeneMap.c
124	./hg/lib/chainGap.c
1091	./hg/lib/wikiTrack.c
140	./hg/lib/sanger22extra.c
941	./hg/lib/wiggleUtils.c
106	./hg/lib/defaultDb.c
229	./hg/lib/hapmapAllelesCombined.c
92	./hg/lib/softberryHom.c
208	./hg/lib/easyGene.c
343	./hg/lib/genePredReader.c
1166	./hg/lib/gv.c
144	./hg/lib/recombRateMouse.c
130	./hg/lib/vegaInfo.c
328	./hg/lib/tigrCmrGene.c
108	./hg/lib/stsAlias.c
218	./hg/lib/plasEndPairs.c
166	./hg/lib/mcnBreakpoints.c
181	./hg/lib/wiggle.c
152	./hg/lib/transRegCode.c
177	./hg/lib/cddInfo.c
254	./hg/lib/affyAllExonProbe.c
99	./hg/lib/gcPercent.c
297	./hg/lib/alleleFreqs.c
145	./hg/lib/tfbsConsFactors.c
147	./hg/lib/flyreg.c
25	./hg/lib/dnaMarkovSql.c
149	./hg/lib/gbMiscDiff.c
205	./hg/lib/samAlignment.c
792	./hg/lib/omicia.c
255	./hg/lib/gencodeIntron.c
144	./hg/lib/bed5Pval.c
198	./hg/lib/taxonDivision.c
148	./hg/lib/goaPart.c
169	./hg/lib/megablastInfo.c
139	./hg/lib/protFeat.c
284	./hg/lib/genomicSuperDups.c
753	./hg/lib/wiggleCart.c
150	./hg/lib/lowelabTIGROperonScore.c
252	./hg/lib/pslReader.c
93	./hg/lib/glDbRep.c
136	./hg/lib/omimTitle.c
190	./hg/lib/axtLib.c
3243	./hg/lib/customFactory.c
488	./hg/lib/ucscRetroInfo.c
162	./hg/lib/humanParalog.c
132	./hg/lib/mysqlTableStatus.c
169	./hg/lib/wgRna.c
135	./hg/lib/ancientRref.c
188	./hg/lib/lowelabPfamHit.c
524	./hg/lib/hgFindSpecCustom.c
724	./hg/lib/affy120KDetails.c
119	./hg/lib/chainLink.c
168	./hg/lib/blastTab.c
172	./hg/lib/minGeneInfo.c
2467	./hg/lib/altGraphX.c
143	./hg/lib/axtInfo.c
551	./hg/lib/qaSeq.c
142	./hg/lib/cnpLocke.c
565	./hg/lib/genoLay.c
194	./hg/lib/affyAtlas.c
46	./hg/lib/landmarkUi.c
124	./hg/lib/cogsxra.c
158	./hg/lib/dv.c
1744	./hg/lib/liftOver.c
2287	./hg/lib/wigDataStream.c
205	./hg/lib/encode/encodeErgeExpProm.c
205	./hg/lib/encode/encodeErgeTransTransf.c
132	./hg/lib/encode/wgEncodeGencodeRefSeq.c
124	./hg/lib/encode/wgEncodeGencodePdb.c
233	./hg/lib/encode/encodeErgeHssCellLines.c
304	./hg/lib/encode/encodePrimateAlleles.c
205	./hg/lib/encode/encodeErge5race.c
27	./hg/lib/encode/encodeRegionInfoCustom.c
279	./hg/lib/encode/encodeErge.c
212	./hg/lib/encode/encodeStanfordPromoters.c
205	./hg/lib/encode/encodeErgeSummary.c
205	./hg/lib/encode/encodeErgeDNAseI.c
124	./hg/lib/encode/encodeRegionInfo.c
205	./hg/lib/encode/encodeErgeMethProm.c
264	./hg/lib/encode/encodeRna.c
162	./hg/lib/encode/pairedTagAlign.c
188	./hg/lib/encode/encodeHapMapAlleleFreq.c
466	./hg/lib/encode/encodePeak.c
205	./hg/lib/encode/encodeErgeInVitroFoot.c
205	./hg/lib/encode/encodeErgeStableTransf.c
124	./hg/lib/encode/wgEncodeGencodeGeneSource.c
146	./hg/lib/encode/tagAlign.c
209	./hg/lib/encode/wgEncodeGencodeAttrs.c
124	./hg/lib/encode/wgEncodeGencodeTag.c
132	./hg/lib/encode/wgEncodeGencodeTranscriptSupport.c
124	./hg/lib/encode/wgEncodeGencodeTranscriptSource.c
169	./hg/lib/encode/peptideMapping.c
158	./hg/lib/encode/wgEncodeGencodeExonSupport.c
1114	./hg/lib/encode/encodeExp.c
205	./hg/lib/encode/encodeErgeBinding.c
205	./hg/lib/encode/encodeIndels.c
143	./hg/lib/encode/wgEncodeGencodeUniProt.c
121	./hg/lib/encode/wgEncodeGencodePubMed.c
182	./hg/lib/encode/encodeStanfordPromotersAverage.c
289	./hg/lib/chainNet.c
99	./hg/lib/isochores.c
138	./hg/lib/botDelay.c
182	./hg/lib/rhMapInfo.c
153	./hg/lib/imageClone.c
183	./hg/lib/sargassoSeaXra.c
144	./hg/lib/bed5FloatScore.c
204	./hg/lib/stsMapMouseNew.c
279	./hg/lib/cgapSage/cgapSage.c
309	./hg/lib/cgapSage/cgapSageLib.c
324	./hg/lib/genotypeFreqs.c
602	./hg/lib/retroMrnaInfo.c
322	./hg/lib/snp125.c
112	./hg/lib/sageCounts.c
98	./hg/lib/est3.c
210	./hg/lib/geneSimilarities.c
241	./hg/lib/dless.c
219	./hg/lib/genMapDb.c
150	./hg/lib/geneCheckDetails.c
147	./hg/lib/softPromoter.c
161	./hg/lib/ensPhusionBlast.c
611	./hg/lib/genomeRangeTreeFile.c
170	./hg/lib/txCluster.c
138	./hg/lib/refSeqStatus.c
155	./hg/lib/lsSnpPdb.c
307	./hg/lib/search.c
995	./hg/lib/fileUi.c
283	./hg/lib/chicken13kInfo.c
3192	./hg/lib/ispyTables.c
1010	./hg/lib/chromGraphFactory.c
803	./hg/lib/protVar.c
280	./hg/lib/hapmapAllelesSummary.c
175	./hg/lib/jgiGene.c
132	./hg/lib/dvXref2.c
136	./hg/lib/geneCheckWidget.c
318	./hg/lib/hgConfig.c
368	./hg/lib/hCommon.c
148	./hg/lib/ccdsNotes.c
145	./hg/lib/wabAli.c
210	./hg/lib/tableStatus.c
504	./hg/lib/ggCluster.c
137	./hg/lib/rnaFold.c
158	./hg/lib/kg1ToKg2.c
77	./hg/lib/dnaMotifSql.c
149	./hg/lib/estPair.c
187	./hg/lib/codeBlastScore.c
7275	./hg/lib/hui.c
437	./hg/lib/stsInfo.c
169	./hg/lib/rikenBest.c
249	./hg/lib/trackVersion.c
172	./hg/lib/flyBase2004Xref.c
149	./hg/lib/genomicDups.c
137	./hg/lib/customPp.c
149	./hg/lib/transMapGene.c
271	./hg/lib/expRecord.c
551	./hg/lib/ggMrnaAli.c
3291	./hg/lib/mdb.c
150	./hg/lib/scoredRef.c
244	./hg/lib/geneCheck.c
121	./hg/lib/snpSeq.c
224	./hg/lib/itemAttr.c
204	./hg/lib/cnpSebat.c
124	./hg/lib/contigAcc.c
172	./hg/lib/rnaSecStr.c
1903	./hg/lib/genePred.c
152	./hg/lib/flyreg2.c
184	./hg/lib/hapmapAlleles.c
268	./hg/lib/trackDb.c
229	./hg/lib/hapmapLd.c
18	./hg/lib/transMapStuff.c
150	./hg/lib/tilingPath.c
225	./hg/lib/rikenCluster.c
212	./hg/lib/bed12Source.c
182	./hg/lib/delConrad2.c
271	./hg/lib/cdsEvidence.c
259	./hg/lib/pgSiftPred.c
170	./hg/lib/splignAlign.c
65	./hg/lib/nonCodingUi.c
144	./hg/lib/scopDes.c
249	./hg/lib/pslWQueryID.c
201	./hg/lib/jaxQTL3.c
159	./hg/lib/codeBlast.c
191	./hg/lib/ld2.c
434	./hg/lib/bedDetail.c
225	./hg/lib/rnaGroup.c
180	./hg/lib/ensXRefZfish.c
124	./hg/lib/kgAlias.c
798	./hg/lib/hgSeq.c
263	./hg/lib/stsInfoRat.c
442	./hg/lib/hgMaf.c
1180	./hg/lib/microarray.c
787	./hg/lib/geneGraph.c
180	./hg/lib/jaxQTL.c
262	./hg/lib/makeItemsItem.c
169	./hg/lib/transMapSrc.c
202	./hg/lib/simpleRepeat.c
226	./hg/lib/netAlign.c
135	./hg/lib/bacEndAlias.c
304	./hg/lib/hapmapPrimateAlleles.c
543	./hg/lib/genePix.c
5038	./hg/lib/hdb.c
43	./hg/lib/suggest.c
144	./hg/lib/cgh.c
207	./hg/lib/knownMore.c
118	./hg/lib/newfoo/cytoBand.c
424	./hg/lib/variome.c
1618	./hg/lib/web.c
368	./hg/lib/altGraph.c
193	./hg/lib/cnpSharp.c
99	./hg/lib/mouseSyn.c
152	./hg/lib/txRnaAccs.c
178	./hg/lib/bdgpSwissProt.c
146	./hg/lib/cnpRedon.c
485	./hg/lib/stsInfo2.c
295	./hg/lib/ccdsInfo.c
568	./hg/lib/cv.c
142	./hg/lib/pgPhenoAssoc.c
353	./hg/lib/dbRIP.c
234	./hg/lib/mafFrames.c
144	./hg/lib/ecCode.c
86	./hg/lib/trashDir.c
142	./hg/lib/cnpSharp2.c
132	./hg/lib/rnaGene.c
312	./hg/lib/genbank.c
184	./hg/lib/cnpSharpCutoff.c
195	./hg/lib/affy10K.c
52	./hg/lib/omiciaUi.c
243	./hg/lib/txInfo.c
384	./hg/lib/putaInfo.c
124	./hg/lib/acemblyClass.c
211	./hg/lib/bed8Attrs.c
209	./hg/lib/chromInfo.c
139	./hg/lib/affyTransLifted.c
308	./hg/lib/bamFile.c
245	./hg/lib/hvGfx.c
246	./hg/lib/orthoAlleles.c
99	./hg/lib/ctgPos.c
169	./hg/lib/bdgpExprLink.c
156	./hg/lib/bdgpGeneInfo.c
229	./hg/lib/ld.c
154	./hg/lib/cdsOrtho.c
106	./hg/lib/alignSeqSizes.c
189	./hg/lib/ucscRetroOrtho.c
73	./hg/lib/ggTypes.c
150	./hg/lib/cddDesc.c
54	./hg/lib/ec.c
816	./hg/lib/pgSnp.c
426	./hg/lib/bed.c
54	./hg/lib/oregannoUi.c
206	./hg/lib/dgv.c
131	./hg/lib/kgColor.c
102	./hg/lib/cytoBand.c
35	./hg/lib/bedCart.c
748	./hg/lib/rangeTreeFile.c
818	./hg/lib/cutter.c
132	./hg/lib/growthCondition.c
177	./hg/lib/alignInfo.c
154	./hg/lib/bgiGeneSnp.c
151	./hg/lib/synteny100000.c
134	./hg/lib/metaChromGraph.c
283	./hg/lib/targetDb.c
84	./hg/lib/pepPred.c
219	./hg/lib/fosEndPairs.c
176	./hg/lib/synMap.c
156	./hg/lib/ecAttribute.c
64	./hg/lib/findKGProtAlias.c
215	./hg/lib/snpTmp.c
268	./hg/lib/mrnaMisMatch.c
214	./hg/lib/snpMap.c
169	./hg/lib/jaxOrtholog.c
189	./hg/lib/taxonName.c
186	./hg/lib/stsMapRat.c
193	./hg/lib/lsSnpPdbChimera.c
160	./hg/lib/transMapInfo.c
932	./hg/lib/fbTables.c
172	./hg/lib/vegaInfoZfish.c
2424	./hg/lib/cart.c
298	./hg/lib/snp.c
322	./hg/lib/rnaHybridization.c
173	./hg/lib/jaxQTL2.c
99	./hg/lib/exoFish.c
253	./hg/lib/liftOverChain.c
126	./hg/lib/gbWarn.c
56	./hg/lib/findKGAlias.c
294	./hg/lib/bed12wSeq.c
191	./hg/lib/lfs.c
191	./hg/lib/tRNAs.c
162	./hg/lib/pbStamp.c
588	./hg/lib/oreganno.c
119	./hg/lib/cpgIsland.c
129	./hg/lib/rankProp.c
182	./hg/lib/snpFasta.c
139	./hg/lib/rgdQtl.c
627	./hg/lib/snp125Ui.c
142	./hg/lib/lowelabArkinOperonScore.c
184	./hg/lib/sangerGeneToWBGeneID.c
472	./hg/lib/snpUi.c
235	./hg/lib/tfbsCons.c
162	./hg/lib/gbRNAs.c
189	./hg/lib/hapmapSnps.c
35	./hg/lib/googleAnalytics.c
169	./hg/lib/mouseSynWhd.c
139	./hg/lib/delHinds2.c
140	./hg/lib/mgiID.c
220	./hg/lib/pgPolyphenPred.c
310	./hg/lib/stanMad.c
139	./hg/lib/bgiGeneInfo.c
326	./hg/lib/hgExp.c
234	./hg/lib/bgiSnp.c
233	./hg/lib/chr18deletions.c
171	./hg/lib/txEdgeBed.c
156	./hg/lib/affyPairs.c
124	./hg/lib/geneTree.c
198	./hg/lib/hgFindSpec.c
152	./hg/lib/tigrOperon.c
139	./hg/lib/blatServers.c
145	./hg/lib/gbProtAnn.c
182	./hg/lib/rhMapZfishInfo.c
132	./hg/lib/HInv.c
244	./hg/lib/taxonNode.c
153	./hg/lib/ggDump.c
68	./hg/lib/trackLayout.c
66	./hg/lib/ggDbIo.c
129	./hg/lib/sgdAbundance.c
3181	./hg/lib/hgFind.c
222	./hg/lib/stsMarker.c
579	./hg/lib/landmark.c
98	./hg/lib/wikiLink.c
132	./hg/lib/yaleGencodeAssoc.c
96	./hg/lib/chromBins.c
281	./hg/lib/stsInfoMouseNew.c
56	./hg/lib/txCommon.c
132	./hg/lib/cogs.c
200	./hg/lib/dbDb.c
238	./hg/lib/tests/spDbTest.c
432	./hg/lib/tests/genePredTester.c
12	./hg/lib/tests/hdbTest.c
153	./hg/lib/tests/pslReaderTester.c
133	./hg/lib/tests/customTrackTester.c
332	./hg/lib/tests/binTest.c
701	./hg/lib/wigAsciiToBinary.c
146	./hg/lib/bed6FloatScore.c
214	./hg/lib/estOrientInfo.c
110	./hg/lib/celeraDupPositive.c
562	./hg/lib/coordConv.c
130	./hg/lib/kgMapName.c
139	./hg/lib/celeraCoverage.c
158	./hg/lib/snp125Exceptions.c
34	./hg/lib/ooUtils.c
94	./hg/lib/chromInserts.c
131	./hg/lib/bactigPos.c
18	./hg/lib/validateGisaid.c
351	./hg/lib/gvUi.c
272	./hg/lib/hapmapPhaseIIISummary.c
236	./hg/lib/snoRNAs.c
186	./hg/lib/sample.c
194	./hg/lib/hapmapAllelesOrtho.c
57	./hg/lib/jalview.c
190	./hg/lib/hPrint.c
177	./hg/lib/ncRna.c
168	./hg/lib/hCytoBand.c
167	./hg/lib/cnpIafrate2.c
53	./hg/lib/minChromSize.c
507	./hg/lib/trackHub.c
124	./hg/lib/transRegCodeCondition.c
96	./hg/lib/loweutils.c
151	./hg/lib/syntenyBerk.c
29	./hg/lib/chainCart.c
303	./hg/lib/pal.c
139	./hg/lib/cnpSebat2.c
132	./hg/lib/kgProtAlias.c
233	./hg/lib/txEdgeOrtho.c
151	./hg/lib/syntenySanger.c
214	./hg/lib/zdobnovSynt.c
256	./hg/lib/snp125CodingCoordless.c
107	./hg/lib/chromKeeper.c
136	./hg/lib/knownToSuper.c
1270	./hg/lib/trackDbCustom.c
395	./hg/lib/rmskOut.c
575	./hg/lib/affyGenoDetails.c
126	./hg/lib/itemConf.c
174	./hg/lib/rnaGenes.c
213	./hg/lib/sage.c
204	./hg/lib/snpExceptions.c
133	./hg/lib/mapSts.c
676	./hg/lib/spDb.c
164	./hg/lib/chainDb.c
174	./hg/lib/pscreen.c
198	./hg/lib/agp.c
170	./hg/lib/atomDb.c
214	./hg/lib/polyGenotype.c
224	./hg/lib/pslWScore.c
212	./hg/lib/pcrResult.c
331	./hg/lib/hapmapSnpsCombined.c
376	./hg/lib/hgGene.c
764	./hg/lib/visiGene.c
1118	./hg/lib/genotype.c
189	./hg/lib/cdsPick.c
864	./hg/lib/mafGene.c
184	./hg/lib/recombRate.c
154	./hg/lib/cartDb.c
642	./hg/lib/chromGraph.c
244	./hg/lib/dbSnpRs.c
199	./hg/lib/taxonXref.c
156	./hg/lib/ensInfo.c
310	./hg/lib/bioImage.c
135	./hg/lib/roughAli.c
164	./hg/lib/cpgIslandExt.c
475	./hg/lib/txGraph.c
126	./hg/lib/knownInfo.c
159	./hg/lib/clonePos.c
124	./hg/lib/bacCloneAlias.c
108	./hg/lib/traceInfo.c
992	./hg/lib/customTrack.c
552	./hg/lib/hubConnect.c
139	./hg/lib/refLink.c
173	./hg/lib/vntr.c
193	./hg/lib/hapmapAlleleFreq.c
102	./hg/lib/affyOffset.c
68	./hg/lib/netCart.c
650	./hg/txGraph/txgAnalyze/txgAnalyze.c
128	./hg/txGraph/txgGoodEdges/txgGoodEdges.c
80	./hg/txGraph/txPslFilter/txPslFilter.c
326	./hg/txGraph/txgAddEvidence/txgAddEvidence.c
1255	./hg/txGraph/txBedToGraph/makeGraph.c
381	./hg/txGraph/txBedToGraph/txBedToGraph.c
120	./hg/txGraph/txgTrim/txgTrim.c
627	./hg/txGraph/txOrtho/txOrtho.c
616	./hg/txGraph/txWalk/txWalk.c
154	./hg/txGraph/txReadRa/txReadRa.c
131	./hg/txGraph/txgToAgx/txgToAgx.c
103	./hg/txGraph/txgToXml/txgToXml.c
113	./hg/txGraph/agxToTxg/agxToTxg.c
84	./hg/txGraph/bedToTxEdges/bedToTxEdges.c
592	./hg/txGraph/txPslToBed/txPslToBed.c
96	./hg/txGraph/txAbFragFind/txAbFragFind.c
37	./hg/hgsqldumpLocal/hgsqldumpLocal.c
720	./hg/gsBig/gsBig.c
430	./hg/pslReps/pslReps.c
80	./hg/gpToGtf/gpToGtf.c
76	./hg/hgChroms/hgChroms.c
90	./hg/hgSpeciesRna/hgSpeciesRna.c
1380	./hg/hgBlatTest/hgBlatTest.c
68	./hg/bedToGenePred/bedToGenePred.c
94	./hg/pslQuickFilter/pslQuickFilter.c
841	./hg/hgBlat/hgBlat.c
96	./hg/pslCat/pslCat.c
126	./hg/secure/secure.c
71	./hg/pslToChain/pslToChain.c
112	./hg/pslOneTwo/chainOneTwo.c
109	./hg/pslOneTwo/pslOneTwo.c
194	./hg/pslHisto/pslHisto.c
146	./hg/hgFileUi/hgFileUi.c
39	./hg/hgsql/hgsql.c
25	./hg/bedSort/bedSort.c
511	./hg/sqlToXml/sqlToXml.c
350	./hg/hgConvert/hgConvert.c
144	./hg/hgGeneBands/hgGeneBands.c
105	./hg/pslToFa/pslToFa.c
307	./hg/reviewSanity/reviewSanity.c
194	./hg/poster/foldGfx/foldGfx.c
1772	./hg/poster/finPoster/finPoster.c
1451	./hg/poster/foldDb/foldDb.c
40	./hg/poster/foldDb/checkDupe/checkDupe.c
476	./hg/hgFileSearch/hgFileSearch.c
69	./hg/tutorial/affyVsIlluminaCommon/affyVsIlluminaCommon.c
100	./hg/tutorial/cgiTaxon/cgiTaxon.c
109	./hg/tutorial/cgiPicture/cgiPicture.c
69	./hg/tutorial/cgiAlign/cgiAlign.c
109	./hg/tutorial/bigGene/bigGene.c
26	./hg/hgsqlimport/hgsqlimport.c
368	./hg/estOrient/estOrient.c
43	./hg/near/hgNear/flyBase.c
152	./hg/near/hgNear/colTemplate.c
534	./hg/near/hgNear/association.c
771	./hg/near/hgNear/customColumn.c
2010	./hg/near/hgNear/hgNear.c
290	./hg/near/hgNear/search.c
156	./hg/near/hgNear/intronSize.c
315	./hg/near/hgNear/configure.c
74	./hg/near/hgNear/examples.c
809	./hg/near/hgNear/expRatio.c
247	./hg/near/hgNear/go.c
294	./hg/near/hgNear/userSettings.c
397	./hg/near/hgNear/advFilter.c
134	./hg/near/hgNear/pfam.c
85	./hg/near/hgNear/afiAli.c
424	./hg/near/hgNear/order.c
348	./hg/near/hgNear/knownGene.c
306	./hg/near/hgNear/getSeq.c
431	./hg/near/hgExpDistance/hgExpDistance_fm_tm.c
193	./hg/near/hgExpDistance/diffDistTables.c
430	./hg/near/hgExpDistance/hgExpDistance_fq.c
325	./hg/near/hgExpDistance/hgExpDistance.c
414	./hg/near/hgExpDistance/hgExpDistance_fm.c
447	./hg/near/hgExpDistance/hgExpDistance_fq_tm.c
347	./hg/near/hgExpDistance/hgExpDistance_tm.c
167	./hg/near/hgKnownToSuper/hgKnownToSuper.c
112	./hg/near/hgNetDist/hprdP2p.c
202	./hg/near/hgNetDist/hgLoadNetDist.c
345	./hg/near/hgNetDist/hgNetDist.c
135	./hg/near/knownToHprd/knownToHprd.c
105	./hg/near/hgProtIdToGenePred/hgProtIdToGenePred.c
73	./hg/near/hgEmblProtLinks/hgEmblProtLinks.c
130	./hg/near/hgMapViaSwissProt/hgMapViaSwissProt.c
500	./hg/near/hgMapToGene/hgMapToGene.c
157	./hg/near/hgGoAssociation/hgGoAssociation.c
110	./hg/near/hgCeOrfToGene/hgCeOrfToGene.c
419	./hg/near/hgClusterGenes/hgClusterGenes.c
63	./hg/near/hprdXmlToTab/hprdXmlToTab.c
2172	./hg/near/hprdXmlToTab/hprd.c
624	./hg/near/hgNearTest/hgNearTest.c
327	./hg/near/hgZfishEnsXRef/hgEnsGeneXRef.c
182	./hg/near/hgWormLinks/hgWormLinks.c
55	./hg/near/pepPredToFa/pepPredToFa.c
305	./hg/regulate/regClusterBedExpCfg/regClusterBedExpCfg.c
451	./hg/regulate/companion/regCompanionCorrelateEnhancerAndExpression/regCompanionCorrelateEnhancerAndExpression.c
92	./hg/regulate/companion/regCompanionEntropy/regCompanionEntropy.c
250	./hg/regulate/companion/regCompanionGraphVsFixedPoints/regCompanionGraphVsFixedPoints.c
355	./hg/regulate/companion/regCompanionChia/regCompanionChia.c
215	./hg/regulate/companion/regCompanionCtcfInterference/regCompanionCtcfInterference.c
89	./hg/regulate/companion/regCompanionSquishGraph/regCompanionSquishGraph.c
263	./hg/regulate/companion/regCompanion5C/regCompanion5C.c
168	./hg/regulate/companion/regCompanionHistoneBox/regCompanionHistoneBox.c
473	./hg/regulate/companion/regCompanionPickEnhancers/regCompanionPickEnhancers.c
163	./hg/regulate/regChromiaMergeWindows/regChromiaMergeWindows.c
139	./hg/regulate/regCluster/regCluster.c
491	./hg/regulate/regClusterTreeCells/regClusterTreeCells.c
667	./hg/regulate/regBeadPos/bak/06/regBeadPos.c
649	./hg/regulate/regBeadPos/bak/02/regBeadPos.c
708	./hg/regulate/regBeadPos/bak/08/regBeadPos.c
649	./hg/regulate/regBeadPos/bak/01/regBeadPos.c
601	./hg/regulate/regBeadPos/bak/05/regBeadPos.c
601	./hg/regulate/regBeadPos/bak/04/regBeadPos.c
744	./hg/regulate/regBeadPos/regBeadPos.c
129	./hg/regulate/regStartSampleEmbl/regStartSampleEmbl.c
283	./hg/regulate/regClusterMakeTableOfTables/regClusterMakeTableOfTables.c
109	./hg/regulate/regBedStats/regBedStats.c
190	./hg/regulate/regClusterAttachMetadataToTableOfTables/regClusterAttachMetadataToTableOfTables.c
1339	./hg/fishClones/fishClones.c
601	./hg/pslPairs/pslPairs.c
644	./hg/hgPcr/hgPcr.c
122	./hg/qacToWig/qacToWig.c
197	./hg/txPaper/txPaperPfam/txPaperPfam.c
166	./hg/txPaper/txGeneBakeOff/refCluster.c
277	./hg/txPaper/txGeneBakeOff/txGeneBakeOff.c
197	./hg/txPaper/txPaperScop/txPaperScop.c
251	./hg/geneOverlap/geneOverlap.c
386	./hg/geneBounds/axtForEst/axtForEst.c
621	./hg/geneBounds/orf/orf.c
125	./hg/geneBounds/expToRna/expToRna.c
233	./hg/geneBounds/orfStats/orfStats.c
75	./hg/geneBounds/checkableBorf/checkableBorf.c
90	./hg/geneBounds/bedThickToCds/bedThickToCds.c
661	./hg/geneBounds/twinOrfStats2/twinOrfStats2.c
360	./hg/geneBounds/estLibStats/estLibStats.c
259	./hg/geneBounds/dnaMotifFind/dnaMotifFind.c
134	./hg/geneBounds/emblMatrixToMotif/emblMatrixToMotif.c
684	./hg/geneBounds/twinOrfStats3/twinOrfStats3.c
344	./hg/geneBounds/eisenInput/eisenInput.c
254	./hg/geneBounds/lib/improbRunInfo.c
89	./hg/geneBounds/motifLogo/motifLogo.c
53	./hg/geneBounds/iriToControlTable/iriToControlTable.c
1159	./hg/geneBounds/twinOrf2/twinOrf2.c
53	./hg/geneBounds/iriToDnaMotif/iriToDnaMotif.c
85	./hg/geneBounds/raToCds/raToCds.c
1004	./hg/geneBounds/clusterRna/clusterRna.c
608	./hg/geneBounds/twinOrfStats/twinOrfStats.c
312	./hg/geneBounds/orfEnum/orfEnum.c
357	./hg/geneBounds/clusterPsl/clusterPsl.c
1005	./hg/geneBounds/twinOrf/twinOrf.c
251	./hg/geneBounds/bedCons/bedCons.c
240	./hg/geneBounds/assessLibs/assessLibs.c
210	./hg/geneBounds/motifSig/motifSig.c
159	./hg/geneBounds/orfCompare/orfCompare.c
85	./hg/geneBounds/liftPromoHits/liftPromoHits.c
34	./hg/geneBounds/averagExp/averagExp.c
1356	./hg/geneBounds/twinOrf3/twinOrf3.c
123	./hg/geneBounds/promoSeqFromCluster/promoSeqFromCluster.c
1008	./hg/geneBounds/clusterGenes/clusterGenes.c
265	./hg/geneBounds/polyInfo/polyInfo.c
185	./hg/synMap/createSlamParaSpec.c
24	./hg/synMap/createBinMap.c
442	./hg/synMap/runSlam.c
113	./hg/synMap/prep_lc_rm_for_slam.c
26	./hg/synMap/synMapTest.c
271	./hg/dnaGene/dnaGene.c
200	./hg/gpcrParser/gpcrParser.c
1247	./hg/randomPlacement/randomPlacement.c
322	./hg/hgGateway/hgGateway.c
365	./hg/hgKnownGeneList/hgKnownGeneList.c
139	./hg/oneShot/wgEncodeRegGenRa/wgEncodeRegGenRa.c
566	./hg/oneShot/tdbRewriteReduceReplaces/tdbRewriteReduceReplaces.c
91	./hg/oneShot/patchToAgp/patchToAgp.c
485	./hg/oneShot/tdbRewriteAddReplaces/tdbRewriteAddReplaces.c
148	./hg/oneShot/rangeGraph/rangeGraph.c
100	./hg/oneShot/rangeGraph/rgi.c
372	./hg/oneShot/spanRaft/spanRaft.c
90	./hg/oneShot/protDat/protDat.c
71	./hg/oneShot/dupedInTable/dupedInTable.c
90	./hg/oneShot/weedTab/weedTab.c
71	./hg/oneShot/doRgdGene2/doRgdGene2.c
89	./hg/oneShot/fakeSeqDiffs/fakeSeqDiffs.c
148	./hg/oneShot/tdbRewriteSubtrackToParent/tdbRewriteSubtrackToParent.c
174	./hg/oneShot/tempLower/tempLower.c
51	./hg/oneShot/rmDupCol1/rmDupCol1.c
108	./hg/oneShot/bedFirstCodingExonSize/bedFirstCodingExonSize.c
113	./hg/oneShot/fixEnsGtf/fixEnsGtf.c
40	./hg/oneShot/jingTestFoo/jingTestFoo.c
790	./hg/oneShot/cacheMergedRanges/rbmTree.c
538	./hg/oneShot/cacheMergedRanges/cacheMergedRanges.c
73	./hg/oneShot/roundNewViewLimitsInRa/roundNewViewLimitsInRa.c
140	./hg/oneShot/bridgeDif/bridgeDif.c
35	./hg/oneShot/faTest/faTest.c
122	./hg/oneShot/testXap/testXap.c
80	./hg/oneShot/randomEst/randomEst.c
239	./hg/oneShot/clonePos/clonePos.c
311	./hg/oneShot/doOmimLocation/doOmimLocation.c
181	./hg/oneShot/testIndex/testIndex.c
110	./hg/oneShot/makeTrackDbTypeTags/makeTrackDbTypeTags.c
226	./hg/oneShot/tetFilter/tetFilter.c
113	./hg/oneShot/agpNotInf/agpNotInf.c
112	./hg/oneShot/kgName/sgName.c
100	./hg/oneShot/kgName/fbName.c
170	./hg/oneShot/kgName/kgName.c
87	./hg/oneShot/fakeLinkage/fakeLinkage.c
39	./hg/oneShot/codAbsAffyQuery/codAbsAffyQuery.c
158	./hg/oneShot/getHumanBrainRna/getHumanBrainRna.c
81	./hg/oneShot/doEvoFoldV2/doEvoFoldV2.c
57	./hg/oneShot/somePsls/somePsls.c
365	./hg/oneShot/agpAddCtgNamesAndGaps/agpAddCtgNamesAndGaps.c
172	./hg/oneShot/evalEnds/evalEnds.c
174	./hg/oneShot/agpVsMap/agpVsMap.c
57	./hg/oneShot/fakeHomozygousity/fakeHomozygousity.c
66	./hg/oneShot/seqFromPsl/seqFromPsl.c
60	./hg/oneShot/musAliAt/musAliAt.c
73	./hg/oneShot/fixBlastTrack/fixBlastTrack.c
86	./hg/oneShot/testBb/testBb.c
171	./hg/oneShot/blatFilter/blatFilter.c
73	./hg/oneShot/pslCut/pslCut.c
76	./hg/oneShot/bed15To3Col/bed15To3Col.c
212	./hg/oneShot/timeGifPng/timeGifPng.c
170	./hg/oneShot/tempLift/tempLift.c
38	./hg/oneShot/padFile/padFile.c
59	./hg/oneShot/addTopoToPrimers/addTopoToPrimers.c
189	./hg/oneShot/trimFosmids/trimFosmids.c
103	./hg/oneShot/labSheet/labSheet.c
201	./hg/oneShot/doRgdGene2Xref/doRgdGene2Xref.c
69	./hg/oneShot/getRgdGeneCds/getRgdGeneCds.c
100	./hg/oneShot/cmpOverlaps/cmpOverlaps.c
238	./hg/oneShot/bwTestRead/bwTestRead.c
134	./hg/oneShot/findToFixBedGraphViewLimits/findToFixBedGraphViewLimits.c
696	./hg/oneShot/tdbRewriteViewsToSubtracks1/tdbRewriteViewsToSubtracks1.c
35	./hg/oneShot/missingTable/missingTable.c
54	./hg/oneShot/mhcToNt/mhcToNt.c
298	./hg/oneShot/chromToPos/chromToPos.c
82	./hg/oneShot/doRgdGene2UniProt/doRgdGene2UniProt.c
163	./hg/oneShot/cartSimNoInsert/cartSimNoInsert.c
173	./hg/oneShot/tdbRewriteSortTags/tdbRewriteSortTags.c
110	./hg/oneShot/mapToSts/mapToSts.c
188	./hg/oneShot/sangPairs/sangPairs.c
571	./hg/oneShot/tdbRewriteRemoveUnused/tdbRewriteRemoveUnused.c
81	./hg/oneShot/doEvoFold/doEvoFold.c
109	./hg/oneShot/doOmimDisorders/doOmimDisorders.c
122	./hg/oneShot/makeOrthoAtgTable/makeOrthoAtgTable.c
75	./hg/oneShot/rmFromFinf/rmFromFinf.c
510	./hg/oneShot/cartSim/cartSim.c
63	./hg/oneShot/cJoinX/cJoinX.c
71	./hg/oneShot/wgEncodeRegTfbsDedupeHelp/wgEncodeRegTfbsDedupeHelp.c
422	./hg/oneShot/evalEndOverlaps/evalEndOverlaps.c
131	./hg/oneShot/evalEndOverlaps/ocp.c
78	./hg/oneShot/doOmimGene2/doOmimGene2.c
202	./hg/oneShot/doOmimAv/doOmimAv.c
77	./hg/oneShot/weedKnownBlastTab/weedKnownBlastTab.c
57	./hg/oneShot/fixGdup/fixGdup.c
65	./hg/oneShot/spSize/spSize.c
104	./hg/oneShot/patchDir/patchDir.c
114	./hg/oneShot/findToFixBedGraphLimits/findToFixBedGraphLimits.c
130	./hg/oneShot/tetDensity/tetDensity.c
57	./hg/oneShot/howBadNt/howBadNt.c
79	./hg/oneShot/findContigsWithClones/findContigsWithClones.c
240	./hg/oneShot/testTableExists/testTableExists.c
56	./hg/oneShot/addChrPsl/addChrPsl.c
143	./hg/oneShot/raPriority/raPriority.c
68	./hg/oneShot/clonesInAgp/clonesInAgp.c
76	./hg/oneShot/freen/freen.c
359	./hg/oneShot/dupeFoo/dupeFoo.c
108	./hg/oneShot/testIxx/testIxx.c
1167	./hg/oneShot/bwTest/bwTest.c
81	./hg/oneShot/doOmimGeneSymbols/doOmimGeneSymbols.c
48	./hg/oneShot/compilerError/compilerError.c
59	./hg/oneShot/splitNcbiFa/splitNcbiFa.c
58	./hg/oneShot/oo21Nts/oo21Nts.c
42	./hg/oneShot/hgFreen/hgFreen.c
466	./hg/oneShot/patchNtAgp/patchNtAgp.c
64	./hg/oneShot/clumpEst3/clumpEst3.c
98	./hg/oneShot/rcvs/rcvs.c
108	./hg/oneShot/makeTrackDbTagVals/makeTrackDbTagVals.c
74	./hg/oneShot/flagMhcClones/flagMhcClones.c
49	./hg/oneShot/newClones/newClones.c
95	./hg/oneShot/joinToPatch/joinToPatch.c
71	./hg/oneShot/fakeBedGraph/fakeBedGraph.c
206	./hg/oneShot/bargeVsMap/bargeVsMap.c
74	./hg/oneShot/faFiltMasked/faFiltMasked.c
426	./hg/oneShot/createScaffoldsAgp/createScaffoldsAgp.c
420	./hg/oneShot/testCart/cart.c
54	./hg/oneShot/testCart/testCart.c
64	./hg/oneShot/testSearch/testSearch.c
113	./hg/oneShot/addMhcClones/addMhcClones.c
228	./hg/oneShot/parseOmimDisorder/parseOmimDisorder.c
501	./hg/oneShot/testIntersect/testIntersect.c
73	./hg/oneShot/fakeChromGraph/fakeChromGraph.c
119	./hg/oneShot/affyAllExonGSColumn/affyAllExonGSColumn.c
767	./hg/oneShot/tdbRewriteViewsToSubtracks/tdbRewriteViewsToSubtracks.c
157	./hg/oneShot/chromPosLookup/chromPosLookup.c
64	./hg/visiGene/vgPatchJax/vgPatchJax.c
724	./hg/visiGene/vgLoadMahoney/vgLoadMahoney.c
257	./hg/visiGene/vgLoadMahoney/mahoney.c
1328	./hg/visiGene/visiGeneLoad/visiGeneLoad.c
289	./hg/visiGene/vgGetText/vgGetText.c
4443	./hg/visiGene/vgGetText/visiGene.c
988	./hg/visiGene/vgLoadJax/vgLoadJax.c
168	./hg/visiGene/vgRemoveSubmission/vgRemoveSubmission.c
111	./hg/visiGene/vgPrepImage/jpgDec.c
414	./hg/visiGene/vgPrepImage/jpgTiles.c
246	./hg/visiGene/vgPrepImage/jp2Dec.c
129	./hg/visiGene/vgPrepImage/vgPrepImage.c
106	./hg/visiGene/visiGeneTest/visiGeneTest.c
204	./hg/visiGene/vgLoadNibb/vgLoadNibb.c
64	./hg/visiGene/gensat/gensatRandomXml/gensatRandomXml.c
80	./hg/visiGene/gensat/gensatFixFull/gensatFixFull.c
130	./hg/visiGene/gensat/gensatFtpList/gensatFtpList.c
3171	./hg/visiGene/gensat/lib/gs.c
301	./hg/visiGene/gensat/vgLoadGensat/vgLoadGensat.c
182	./hg/visiGene/gensat/gensatFtpImages/gensatFtpImages.c
158	./hg/visiGene/gensat/gensatImageDownload/gensatImageDownload.c
95	./hg/visiGene/vgChangeContributors/vgChangeContributors.c
253	./hg/visiGene/vgLoadAllen/vgLoadAllen.c
558	./hg/visiGene/visiGeneSearch/visiGeneSearch.c
1682	./hg/visiGene/vgProbeTrack/vgProbeTrack.c
341	./hg/visiGene/knownToVisiGene/knownToVisiGene.c
251	./hg/visiGene/jackson/mysqlEscape/mysqlEscape.c
797	./hg/visiGene/hgVisiGene/visiSearch.c
67	./hg/visiGene/hgVisiGene/testVisiSearch.c
164	./hg/visiGene/hgVisiGene/fullTextExperiment.c
165	./hg/visiGene/hgVisiGene/captionElement.c
221	./hg/visiGene/hgVisiGene/probePage.c
952	./hg/visiGene/hgVisiGene/printCaption.c
902	./hg/visiGene/hgVisiGene/hgVisiGene.c
37	./hg/visiGene/hgVisiGene/configPage.c
63	./hg/baseMask/bedToBaseMask.c
118	./hg/baseMask/baseMaskToBed.c
53	./hg/baseMask/trackToBaseMask.c
115	./hg/baseMask/cachedMask.c
96	./hg/baseMask/baseMask.c
107	./hg/txGene/txGeneProtAndRna/txGeneProtAndRna.c
132	./hg/txGene/txGeneFromBed/txGeneFromBed.c
114	./hg/txGene/txGeneColor/txGeneColor.c
165	./hg/txGene/txGeneExplainUpdate1/txGeneExplainUpdate1.c
290	./hg/txGene/txGeneSeparateNoncoding/txGeneSeparateNoncoding.c
238	./hg/txGene/txGeneXref/txGeneXref.c
259	./hg/txGene/txGeneCdsMap/txGeneCdsMap.c
67	./hg/txGene/txGeneAddOldUnmapped/txGeneAddOldUnmapped.c
327	./hg/txGene/txGeneCanonical/txGeneCanonical.c
177	./hg/txGene/txGeneAlias/txGeneAlias.c
92	./hg/txGene/txGeneAltProt/txGeneAltProt.c
233	./hg/txGene/txGeneExplainUpdate2/txGeneExplainUpdate2.c
312	./hg/txGene/txGeneAccession/txGeneAccession.c
235	./hg/pslDropOverlap/pslDropOverlap.c
3118	./hg/hgTrackUi/hgTrackUi.c
52	./hg/hgTrackUi/encodePeakUi.c
66	./hg/hgTrackUi/cgapSageUi.c
253	./hg/pslDiff/pslDiff.c
305	./hg/pslDiff/pslSets.c
183	./hg/pslSelect/pslSelect.c
59	./hg/hgBatch/hgBatch.c
69	./hg/pslMaxMap/pslMaxMap.c
246	./hg/patCount/patCount.c
123	./hg/genePredToFakePsl/genePredToFakePsl.c
1255	./hg/hgCustom/hgCustom.c
289	./hg/trfBig/trfBig.c
98	./hg/pslxToFa/pslxToFa.c
157	./hg/pslToPileup/pslToPileup.c
577	./hg/hgcentralTidy/hgcentralTidy.c
240	./hg/liftFrags/liftFrags.c
59	./hg/pslSwap/pslSwap.c
467	./hg/pslStats/pslStats.c
175	./hg/hgSelect/hgSelect.c
742	./hg/phyloGif/phyloGif.c
1665	./hg/liftUp/liftUp.c
329	./hg/blastToPsl/blastXmlToPsl.c
123	./hg/blastToPsl/blastToPsl.c
4640	./hg/blastToPsl/ncbiBlast.c
324	./hg/blastToPsl/pslBuild.c
191	./hg/ultras/ultraPlateau/ultraPlateau.c
70	./hg/ultras/plateOfPrimers/plateOfPrimers.c
77	./hg/ultras/ultraPcrRegions/ultraPcrRegions.c
117	./hg/ultras/sqlAddCol/sqlAddCol.c
140	./hg/ultras/ultraDb/as/udHistory.c
271	./hg/ultras/regionToPrimer3/regionToPrimer3.c
44	./hg/monitor/cacti/cactiSine/cactiSine.c
212	./hg/agpToGl/agpToGl.c
509	./hg/altSplice/filterEdges/filterEdges.c
258	./hg/altSplice/lib/mouseAPSetEventMap.c
657	./hg/altSplice/lib/pfamDat.c
152	./hg/altSplice/lib/affyPres.c
135	./hg/altSplice/lib/heap.c
560	./hg/altSplice/lib/spliceGraph.c
417	./hg/altSplice/lib/splice.c
333	./hg/altSplice/lib/altSpliceSite.c
252	./hg/altSplice/lib/altProbe.c
91	./hg/altSplice/lib/heapTest.c
148	./hg/altSplice/lib/dMatrix.c
698	./hg/altSplice/lib/exonGraph.c
230	./hg/altSplice/lib/affyProbe.c
2141	./hg/altSplice/exonWalk/exonWalk.c
175	./hg/altSplice/exonWalk/borfMatcher.c
373	./hg/altSplice/axtCountBeds/axtCountBeds.c
316	./hg/altSplice/affySplice/probeMatcher.c
95	./hg/altSplice/affySplice/bedsSpliceCheck.c
1065	./hg/altSplice/affySplice/gcPresAbs.c
254	./hg/altSplice/affySplice/rnaBindingClusterCorr.c
112	./hg/altSplice/affySplice/agxStartsEnds.c
818	./hg/altSplice/affySplice/junctionSets.c
41	./hg/altSplice/affySplice/dataMatrixToSql.c
229	./hg/altSplice/affySplice/eseScorer.c
2234	./hg/altSplice/affySplice/altHtmlPages.c
431	./hg/altSplice/affySplice/spliceProbeVis.c
4825	./hg/altSplice/affySplice/altProbes.c
74	./hg/altSplice/affySplice/dataMatrixToSoft.c
175	./hg/altSplice/altSplice/consForBed.c
350	./hg/altSplice/altSplice/geneGraphTest.c
952	./hg/altSplice/altSplice/altSplice.c
505	./hg/altSplice/altSplice/altSummary.c
66	./hg/altSplice/altSplice/agxToBed.c
1813	./hg/altSplice/altSplice/altPaths.c
1936	./hg/altSplice/altSplice/orthoSplice.c
1679	./hg/altSplice/altSplice/altAnalysis.c
37	./hg/altSplice/altSplice/testAltGraphXMem.c
231	./hg/altSplice/altSplice/bedInGraph.c
70	./hg/altSplice/altSplice/bedToExons.c
292	./hg/altSplice/altSplice/spliceStats.c
97	./hg/altSplice/altSplice/sequenceForBed.c
173	./hg/altSplice/altSplice/correlateWithExpression.c
129	./hg/altSplice/altSplice/genePredToPsl.c
34	./hg/altSplice/altSplice/genePredToBed.c
95	./hg/altSplice/agxToXml/agxToXml.c
773	./hg/altSplice/spliceWalk/spliceWalk.c
78	./hg/agpCloneCheck/agpCloneCheck.c
96	./hg/hgGeneList/hgGeneList.c
107	./hg/genePredCheck/genePredCheck.c
295	./hg/pslPartition/pslPartition.c
222	./hg/chimpStuff/chimpHiQualDiffs/chimpHiQualDiffs.c
188	./hg/chimpStuff/chimpSuperQuals/chimpSuperQuals.c
111	./hg/chimpStuff/chimpChromContigAgp/chimpChromContigAgp.c
650	./hg/gsid/pbGsid/pbGsid.c
238	./hg/gsid/gsidAaMsa/gsidAaMsa.c
55	./hg/gsid/gsidTable/gsidSubjInfo.c
220	./hg/gsid/gsidTable/configure.c
337	./hg/gsid/gsidTable/advFilter.c
1767	./hg/gsid/gsidTable/gsidTable.c
102	./hg/gsid/gsidTable/getSeq.c
109	./hg/gsid/gsidPosSelect/gsidPosSelect.c
111	./hg/gsid/gsidMsaToTab/gsidMsaToTab.c
294	./hg/gsid/gsidGetConsensus/gsidGetConsensus.c
186	./hg/gsid/gsidMsa/gsidMsa.c
197	./hg/gsid/gsidSubj3/vaccine.c
138	./hg/gsid/gsidSubj3/clinical.c
318	./hg/gsid/gsidSubj3/gsidSubj3.c
108	./hg/gsid/gsidSubj3/demog.c
114	./hg/gsid/gsidSubj3/sequence.c
102	./hg/gsid/gsidPbGateway/gsidPbGateway.c
109	./hg/gsid/gsIdXref/gsIdXref.c
1278	./hg/gsid/gsidMember/gsidMember.c
202	./hg/gsid/gsidMember/paypalSignEncrypt.c
130	./hg/gsid/gsidMember/bio.c
106	./hg/gsid/pwdtest/pwdtest.c
101	./hg/gsid/gsidSubj/vaccine.c
138	./hg/gsid/gsidSubj/clinical.c
317	./hg/gsid/gsidSubj/gsidSubj.c
108	./hg/gsid/gsidSubj/demog.c
114	./hg/gsid/gsidSubj/sequence.c
1698	./hg/gbToFaRa/gbToFaRa.c
404	./hg/uniqSize/uniqSize.c
325	./hg/bedItemOverlapCount/bedItemOverlapCount.c
139	./hg/pslFilter/pslFilter.c
211	./hg/agpAllToFaFile/agpAllToFaFile.c
184	./hg/pslCluster/pslCluster.c
69	./hg/qacIndex/qacIndex.c
747	./hg/pslPretty/pslPretty.c
147	./hg/bioImage/hgBioImage/hgBioImage.c
255	./hg/bioImage/loadMahoney/loadMahoney.c
257	./hg/bioImage/loadMahoney/mahoney.c
190	./hg/bioImage/knownToBioImage/knownToBioImage.c
350	./hg/bioImage/bioImageLoad/bioImageLoad.c
881	./hg/hgTracks/bedTrack.c
322	./hg/hgTracks/netTrack.c
182	./hg/hgTracks/rmskTrack.c
309	./hg/hgTracks/cgapSageTrack.c
867	./hg/hgTracks/searchTracks.c
575	./hg/hgTracks/config.c
69	./hg/hgTracks/wiki.c
141	./hg/hgTracks/oneTrack.c
1971	./hg/hgTracks/imageV2.c
1653	./hg/hgTracks/wigTrack.c
256	./hg/hgTracks/wikiTrack.c
2471	./hg/hgTracks/variation.c
306	./hg/hgTracks/encode.c
30	./hg/hgTracks/gbrowseTest.c
6055	./hg/hgTracks/hgTracks.c
338	./hg/hgTracks/transcriptome.c
1835	./hg/hgTracks/expRatioTracks.c
1878	./hg/hgTracks/cds.c
172	./hg/hgTracks/factorSource.c
135	./hg/hgTracks/contigTrack.c
975	./hg/hgTracks/bamTrack.c
228	./hg/hgTracks/rnaFoldTrack.c
635	./hg/hgTracks/vcfTrack.c
125	./hg/hgTracks/gvfTrack.c
546	./hg/hgTracks/pslTrack.c
417	./hg/hgTracks/rnaPLFoldTrack.c
76	./hg/hgTracks/switchGear.c
247	./hg/hgTracks/multiWig.c
262	./hg/hgTracks/cytoBandTrack.c
2530	./hg/hgTracks/wigMafTrack.c
305	./hg/hgTracks/retroGene.c
947	./hg/hgTracks/hapmapTrack.c
165	./hg/hgTracks/goldTrack.c
283	./hg/hgTracks/bedGraph.c
1168	./hg/hgTracks/snakeTrack.c
128	./hg/hgTracks/renderMain.c
363	./hg/hgTracks/altGraphXTrack.c
221	./hg/hgTracks/makeItemsTrack.c
150	./hg/hgTracks/bigWigTrack.c
426	./hg/hgTracks/chainTrack.c
936	./hg/hgTracks/sampleTracks.c
717	./hg/hgTracks/coverageTrack.c
12986	./hg/hgTracks/simpleTracks.c
113	./hg/hgTracks/container.c
702	./hg/hgTracks/loweLabTracks.c
108	./hg/hgTracks/bigWarn.c
184	./hg/hgTracks/bigBedTrack.c
174	./hg/hgTracks/cutterTrack.c
203	./hg/hgTracks/wabaTrack.c
166	./hg/hgTracks/transMapTracks.c
972	./hg/hgTracks/mafTrack.c
334	./hg/hgTracks/chromGraphTrack.c
78	./hg/hgTracks/mainMain.c
127	./hg/zoo/zooLib/util.c
42	./hg/zoo/zooLib/misc.c
113	./hg/zoo/zooLib/args.c
134	./hg/zoo/zooLib/read_malign.c
150	./hg/zoo/pslToFa/pslToFa.c
325	./hg/zoo/alignToPsl/alignToPsl.c
243	./hg/zoo/transitivityCheck/transitivity.c
58	./hg/zoo/pslUnpackBlocks/pslUnpackBlocks.c
257	./hg/zoo/analyze4d/analyze.c
885	./hg/updateStsInfo/updateStsInfo.c
118	./hg/fragPart/fragPart.c
242	./hg/test/foo.c
33	./hg/test/test.c
321	./hg/test/otest/test1.c
172	./hg/gpStats/gpStats.c
703	./hg/zfishBacClonesandSts/zfishBacClonesandSts.c
5161	./hg/hgText/hgText.c
882	./hg/hgText/hgWigText.c
448	./hg/splignToPsl/splignToPsl.c
53	./hg/splitFa/splitFa.c
41	./hg/cartReset/cartReset.c
692	./hg/affyGnf/affyPslAndAtlasToBed.c
337	./hg/affyGnf/affyUclaMergePslData.c
172	./hg/affyGnf/pslAffySelect.c
212	./hg/nci60/findStanAlignments.c
247	./hg/nci60/stanToBedAndExpRecs.c
464	./hg/autoDtd/autoDtd.c
250	./hg/hgApi/hgApi.c
203	./hg/bedIntersect/bedIntersect.c
87	./hg/mdToNcbiLift/mdToNcbiLift.c
113	./hg/qaAgpToQacIdx/qaAgpToQacIdx.c
173	./hg/agpMergeChromScaf/agpMergeChromScaf.c
300	./hg/pslGlue/pslGlue.c
85	./hg/pslSomeRecords/pslSomeRecords.c
558	./hg/checkTableCoords/checkTableCoords.c
173	./hg/logCrawl/crawlForHogs/crawlForHogs.c
184	./hg/logCrawl/accessLogWigs/accessLogWigs.c
73	./hg/logCrawl/accessLogSort/accessLogSort.c
173	./hg/logCrawl/sessionDbCrawl/sessionDbCrawl.c
593	./hg/logCrawl/hgAccessCrawl/hgAccessCrawl.c
74	./hg/logCrawl/accessLogFilter/accessLogFilter.c
129	./hg/logCrawl/ticksToWig/ticksToWig.c
97	./hg/logCrawl/crawlForPosAndTime/crawlForPosAndTime.c
128	./hg/logCrawl/accessLogMerge/accessLogMerge.c
470	./hg/dbTrash/dbTrash.c
627	./hg/formatZfishSts/formatZfishSts.c
738	./hg/orthoMap/orthoEvaluate.c
92	./hg/orthoMap/orthoEval.c
1322	./hg/orthoMap/orthoMap.c
64	./hg/orthoMap/mgcFastaForBed.c
146	./hg/orthoMap/agxToIntronBeds.c
75	./hg/orthoMap/bedToFrames.c
507	./hg/orthoMap/orthoPickIntron.c
107	./hg/gisaid/gisaidSample/demog.c
328	./hg/gisaid/gisaidSample/gisaidSample.c
129	./hg/gisaid/gisaidSample/sequence.c
328	./hg/gisaid/gisaidSubj/gisaidSubj.c
107	./hg/gisaid/gisaidSubj/demog.c
120	./hg/gisaid/gisaidSubj/sequence.c
1724	./hg/gisaid/gisaidTable/gisaidTable.c
59	./hg/gisaid/gisaidTable/gisaidSubjInfo.c
221	./hg/gisaid/gisaidTable/configure.c
334	./hg/gisaid/gisaidTable/advFilter.c
98	./hg/gisaid/gisaidTable/getSeq.c
226	./hg/altGraph/test.c
606	./hg/altGraph/altGraph.c
530	./hg/rnaStructure/rnaPhylo/rnaPhylo.c
180	./hg/rnaStructure/utrFa/utrFa.c
141	./hg/rnaStructure/hgLoadRnaFold/hgLoadRnaFold.c
58	./hg/rnaStructure/rnaFoldBig/rnaFoldBig.c
318	./hg/getFeatDna/getFeatDna.c
257	./hg/scanRa/scanRa.c
181	./hg/liftOver/liftOver.c
120	./hg/liftOver/liftOverMerge.c
129	./hg/ffaToFa/ffaToFa.c
109	./hg/protein/kgSelect/kgSelect.c
118	./hg/protein/getInterProFa/getInterProFa.c
139	./hg/protein/kgBestRef2/kgResultBestRef2.c
220	./hg/protein/kgBestRef2/kgPrepBestRef2.c
91	./hg/protein/fixAgp/fixAgp.c
109	./hg/protein/spOrganism/spOrganism.c
111	./hg/protein/kgProtAliasNCBI/kgProtAliasNCBI.c
152	./hg/protein/omimCheckAv/omimCheckAv.c
184	./hg/protein/scopCollapse/scopCollapse.c
299	./hg/protein/pbCalDistGlobal/pbCalDistGlobal.c
1257	./hg/protein/spToDb/spToDb.c
1014	./hg/protein/spToDb/spToDb.myVersion.c
314	./hg/protein/dv2/dv2.c
698	./hg/protein/pbGlobal/pbGlobal.c
201	./hg/protein/kgXref2/kgXref2.c
71	./hg/protein/kgAliasKgXref/kgAliasKgXref.c
168	./hg/protein/pfamXref/pfamXref.c
535	./hg/protein/pbTracks/pbTracks.c
70	./hg/protein/kgPick0/kgPickPrep.c
119	./hg/protein/lib/unirefTbl.c
130	./hg/protein/lib/spKgMap.c
154	./hg/protein/lib/uniref.c
963	./hg/protein/lib/doStamps.c
276	./hg/protein/lib/spMapper.c
1727	./hg/protein/lib/doTracks.c
213	./hg/protein/lib/doSam.c
1047	./hg/protein/lib/pbUtil.c
240	./hg/protein/lib/domains.c
83	./hg/protein/kgAttachKegg/kgAttachKegg.c
236	./hg/protein/spTest/spTest.c
174	./hg/protein/gadPos/gadPos.c
179	./hg/protein/kgAliasP/kgAliasP.c
121	./hg/protein/spToSpXref2/spToSpXref2.c
104	./hg/protein/kgGetPep/kgGetPep.c
180	./hg/protein/kgUniq/kgUniq.c
122	./hg/protein/kgProtAlias/kgProtAlias.c
143	./hg/protein/kgBestMrna2/kgResultBestMrna2.c
207	./hg/protein/kgBestMrna2/kgPrepBestMrna2.c
228	./hg/protein/kgCheck2/kgCheck2.c
206	./hg/protein/kgBioCyc1/kgBioCyc1.c
172	./hg/protein/kgXref/kgXref.c
302	./hg/protein/omimParseRec/omimParseRec.c
287	./hg/protein/spm7/spm7.c
361	./hg/protein/omimParseAv/omimParseAv.c
328	./hg/protein/pbCalDist/pbCalDist.c
76	./hg/protein/hmmPfamToTab/hmmPfamToTab.c
132	./hg/protein/spDbAddVarSplice/spDbAddVarSplice.c
77	./hg/protein/pfamToGoRdf/pfamToGoRdf.c
605	./hg/protein/pfamToGoRdf/rdf.c
148	./hg/protein/kgAliasM/kgAliasM.c
102	./hg/protein/spXref2/spXref2.c
116	./hg/protein/spm3/spm3.c
115	./hg/protein/fixMd/fixMd.c
220	./hg/protein/kgPick/kgPick.c
116	./hg/protein/spXref3/spXref3.c
119	./hg/protein/pbHgnc/pbHgnc.c
150	./hg/protein/spToProteins/spToProteins.c
207	./hg/protein/kgCheck/kgCheck.c
236	./hg/protein/kgBestMrna/kgPrepBestMrna2.c
340	./hg/protein/kgBestMrna/kgResultBestMrna.c
230	./hg/protein/kgBestMrna/kgPrepBestMrna.c
96	./hg/protein/pbGateway/pbGateway.c
139	./hg/protein/spLoadRankProp/rankPropProt.c
188	./hg/protein/spLoadRankProp/spLoadRankProp.c
86	./hg/protein/spToProteinsVar/spToProteinsVar.c
103	./hg/protein/blastRecipBest/blastRecipBest.c
125	./hg/protein/kgPepMrna/kgPepMrna.c
228	./hg/protein/spLoadPsiBlast/spLoadPsiBlast.c
103	./hg/protein/kgPutBack/kgPutBack.c
331	./hg/protein/pbCalResStd/pbCalResStd.c
290	./hg/protein/spm6/spm6.c
137	./hg/protein/rmKGPepMrna/rmKGPepMrna.c
189	./hg/protein/kgGetCds/kgGetCds.c
120	./hg/protein/kgBioCyc0/kgBioCyc0.c
109	./hg/protein/pbCalPi/pbCalPi.c
290	./hg/protein/pbCalResStdGlobal/pbCalResStdGlobal.c
71	./hg/protein/kgAliasRefseq/kgAliasRefseq.c
752	./hg/liftAgp/liftAgp.c
222	./hg/makeDb/hgLoadSample/hgLoadSample.c
125	./hg/makeDb/hgRgdParsePathwayObo/hgRgdParsePathwayObo.c
89	./hg/makeDb/hgLoadAxt/hgLoadAxt.c
151	./hg/makeDb/hgRatioMicroarray/hgRatioMicroarray.c
189	./hg/makeDb/hgWaba/hgWaba.c
290	./hg/makeDb/hgKnownMore/hgKnownMore.c
152	./hg/makeDb/hgKnownMore/hugoMulti.c
590	./hg/makeDb/hgKgMrna/hgKgMrna.c
293	./hg/makeDb/schema/joinerGraph/joinerGraph.c
125	./hg/makeDb/schema/joinTwoInfo/joinTwoInfo.c
111	./hg/makeDb/schema/dbFindFieldsWith/dbFindFieldsWith.c
98	./hg/makeDb/schema/makeTableDescriptions/makeTableDescriptions.c
50	./hg/makeDb/schema/joinableFields/joinableFields.c
915	./hg/makeDb/schema/joinerCheck/joinerCheck.c
551	./hg/makeDb/schema/dbSnoop/dbSnoop.c
120	./hg/makeDb/hgLoadItemAttr/hgLoadItemAttr.c
111	./hg/makeDb/hgTpf/hgTpf.c
153	./hg/makeDb/hgMedianMicroarray/hgMedianMicroarray.c
298	./hg/makeDb/hgLoadChain/hgLoadChain.c
320	./hg/makeDb/hgCalStat/hgCalStat.c
370	./hg/makeDb/hgLoadOut/hgLoadOut.c
197	./hg/makeDb/simpleGap/simpleGap.c
226	./hg/makeDb/hgLoadChromGraph/hgLoadChromGraph.c
143	./hg/makeDb/hgFakeAgp/hgFakeAgp.c
50	./hg/makeDb/hgDropSplitTable/hgDropSplitTable.c
435	./hg/makeDb/trackDbPatch/trackDbPatch.c
192	./hg/makeDb/hgSanger20/hgSanger20.c
225	./hg/makeDb/ldHgGene/ldHgGene.c
272	./hg/makeDb/hgFindSpec/hgFindSpec.c
394	./hg/makeDb/hgStanfordMicroarray/hgStanfordMicroarray.c
145	./hg/makeDb/hgLoadBlastTab/hgLoadBlastTab.c
213	./hg/makeDb/hgMapMicroarray/hgMapMicroarray.c
116	./hg/makeDb/hgGenericMicroarray/hgGenericMicroarray.c
836	./hg/makeDb/hgTrackDb/hgTrackDb.c
121	./hg/makeDb/hgNibSeq/hgNibSeq.c
112	./hg/makeDb/hgStsAlias/hgStsAlias.c
277	./hg/makeDb/hgTomRough/hgTomRough.c
104	./hg/makeDb/hgTomRough/tomRough.c
91	./hg/makeDb/hgLoadMafFrames/hgLoadMafFrames.c
229	./hg/makeDb/hgLoadNet/hgLoadNet.c
306	./hg/makeDb/hgSanger22/hgSanger22.c
663	./hg/makeDb/hgLoadBed/hgLoadBed.c
243	./hg/makeDb/hgCountAlign/slidingWin.c
377	./hg/makeDb/hgCountAlign/hgCountAlign.c
104	./hg/makeDb/hgCountAlign/align.c
216	./hg/makeDb/hgCountAlign/winCounts.c
98	./hg/makeDb/hgCtgPos/liftSpec.c
174	./hg/makeDb/hgCtgPos/hgCtgPos.c
82	./hg/makeDb/hgGeneBands/hgGeneBands.c
54	./hg/makeDb/hgBbiDbLink/hgBbiDbLink.c
61	./hg/makeDb/hgGetKgUrls/hgGetKgUrls.c
203	./hg/makeDb/hgKgGetText/hgKgGetText.c
343	./hg/makeDb/mdbUpdate/mdbUpdate.c
429	./hg/makeDb/mdbUpdate/mdbPrint.c
61	./hg/makeDb/tfbsConsSort/tfbsConsSort.c
119	./hg/makeDb/hgCutters/hgCutters.c
51	./hg/makeDb/hgRenameSplitTable/hgRenameSplitTable.c
447	./hg/makeDb/hgGcPercent/hgGcPercent.c
164	./hg/makeDb/hgLoadWiggle/hgDumpWiggle.c
135	./hg/makeDb/hgLoadWiggle/wigEncode.c
441	./hg/makeDb/hgLoadWiggle/hgLoadWiggle.c
533	./hg/makeDb/hgLoadWiggle/hgWiggle.c
131	./hg/makeDb/outside/hgSoftPromoter/hgSoftPromoter.c
155	./hg/makeDb/outside/hgSuperfam/hgSuperfam.c
94	./hg/makeDb/outside/hgBioCyc/hgBioCyc.c
130	./hg/makeDb/outside/hgPhMouse/hgPhMouse.c
57	./hg/makeDb/outside/hgAvidShortBed/hgAvidShortBed.c
441	./hg/makeDb/outside/hgCGAP/hgCGAP.c
60	./hg/makeDb/outside/sanger22gtf/sanger22gtf.c
160	./hg/makeDb/outside/hgRnaGenes/hgRnaGenes.c
102	./hg/makeDb/outside/hgKegg/hgKegg.c
181	./hg/makeDb/outside/hgExonerate/hgExonerate.c
132	./hg/makeDb/outside/nibb/nibbPrepImages/nibbPrepImages.c
149	./hg/makeDb/outside/nibb/nibbImageProbes/nibbImageProbes.c
648	./hg/makeDb/outside/nibb/nibbParseImageDir/nibbParseImageDir.c
95	./hg/makeDb/outside/nibb/nibbNameFix/nibbNameFix.c
113	./hg/makeDb/outside/cgapSage/cgapSageFind/uninteresting.c
354	./hg/makeDb/outside/cgapSage/cgapSageFind/cgapSageFind.c
227	./hg/makeDb/outside/cgapSage/cgapSageBedAddFreqs/cgapSageBedAddFreqs.c
618	./hg/makeDb/outside/hgFlyBase/hgFlyBase.c
105	./hg/makeDb/outside/hgSoftberryHom/hgSoftberryHom.c
689	./hg/makeDb/outside/hgLoadEranModules/hgLoadEranModules.c
246	./hg/makeDb/outside/hgLoadEranModules/esMotif.c
88	./hg/makeDb/outside/hgFiberglass/hgFiberglass.c
89	./hg/makeDb/outside/vegaBuildInfo/vegaBuildInfo.c
174	./hg/makeDb/outside/hgLsSnpPdbLoad/hgLsSnpPdbLoad.c
115	./hg/makeDb/outside/samHit/samHit.c
234	./hg/makeDb/outside/hgGnfMicroarray/hgGnfMicroarray.c
404	./hg/makeDb/outside/allenBrain/allenCleanup/allenCleanup.c
224	./hg/makeDb/outside/allenBrain/allenCollectSeq/allenCollectSeq.c
52	./hg/makeDb/outside/exonerateGffDoctor/exonerateGffDoctor.c
253	./hg/makeDb/outside/hgJaxQtl/hgJaxQtl.c
83	./hg/makeDb/outside/hgKegg2/hgKegg2.c
112	./hg/makeDb/outside/yeast/hgSgdGfp/hgSgdGfp.c
191	./hg/makeDb/outside/yeast/hgSgdGff3/hgSgdGff3.c
202	./hg/makeDb/outside/yeast/fixHarbisonMotifs/fixHarbisonMotifs.c
370	./hg/makeDb/outside/yeast/hgYeastRegCode/hgYeastRegCode.c
188	./hg/makeDb/outside/yeast/checkSgdSync/checkSgdSync.c
101	./hg/makeDb/outside/yeast/hgSgdPep/hgSgdPep.c
122	./hg/makeDb/outside/hgKegg3/hgKegg3.c
34	./hg/makeDb/htTpf/htTpf.c
82	./hg/makeDb/hgDeleteChrom/hgDeleteChrom.c
329	./hg/makeDb/hgLoadMaf/hgLoadMaf.c
293	./hg/makeDb/hgLoadMaf/hgLoadMafSummary.c
229	./hg/makeDb/hgExperiment/hgExperiment.c
92	./hg/makeDb/hgExtFileCheck/hgExtFileCheck.c
123	./hg/makeDb/hgClonePos/gsSeqInfo.c
352	./hg/makeDb/hgClonePos/hgClonePos.c
171	./hg/makeDb/tfbsConsLoc/util.c
412	./hg/makeDb/tfbsConsLoc/tfbsConsLoc.c
162	./hg/makeDb/tfbsConsLoc/tfbsConsLocUtil.c
509	./hg/makeDb/tfbsConsLoc/seq.c
224	./hg/makeDb/tfbsConsLoc/matt-maf.c
137	./hg/makeDb/trackDbRaFormat/trackDbRaFormat.c
81	./hg/makeDb/hgGetNrOmimGene/hgGetNrOmimGene.c
164	./hg/makeDb/hgLoadGenePred/hgLoadGenePred.c
158	./hg/makeDb/hgBedsToBedExps/bToBeCfg.c
350	./hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c
232	./hg/makeDb/hgLoadSeq/hgLoadSeq.c
119	./hg/makeDb/hgLoadSqlTab/hgLoadSqlTab.c
161	./hg/makeDb/hgPar/hgPar.c
138	./hg/makeDb/hgPar/parSpec.c
287	./hg/makeDb/hgLoadPsl/hgLoadPsl.c
176	./hg/makeDb/hgTraceInfo/hgTraceInfo.c
259	./hg/makeDb/hgKnownMore.oo21/hgKnownMore.c
143	./hg/makeDb/hgKnownMore.oo21/hugoMulti.c
277	./hg/makeDb/genbank/src/process/gbProcessedCheck.c
831	./hg/makeDb/genbank/src/process/gbProcess.c
1023	./hg/makeDb/genbank/src/process/gbParse.c
149	./hg/makeDb/genbank/src/mgc/mgcClone.c
314	./hg/makeDb/genbank/src/mgc/mgcLibrary.c
266	./hg/makeDb/genbank/src/mgc/mgcImport.c
268	./hg/makeDb/genbank/src/mgc/mgcFullength.c
173	./hg/makeDb/genbank/src/mgc/mgcStage1.c
379	./hg/makeDb/genbank/src/mgc/mgcDbLoad.c
570	./hg/makeDb/genbank/src/repair/refPepRepair.c
84	./hg/makeDb/genbank/src/repair/repairExtFile.c
1103	./hg/makeDb/genbank/src/dbload/gbMetaData.c
887	./hg/makeDb/genbank/src/dbload/gbLoadRna.c
560	./hg/makeDb/genbank/src/dbload/gbMDParse.c
699	./hg/makeDb/genbank/src/dbload/gbBuildState.c
156	./hg/makeDb/genbank/src/dbload/dbLoadOptions.c
449	./hg/makeDb/genbank/src/dbload/gbAlignData.c
51	./hg/makeDb/genbank/src/dbload/dbLoadPartitions.c
309	./hg/makeDb/genbank/src/dbload/gbGeneTbl.c
444	./hg/makeDb/genbank/src/dbload/gbAlignTbl.c
178	./hg/makeDb/genbank/src/dbload/gbIgnoreDelete.c
444	./hg/makeDb/genbank/src/extFileUpdate/extFileUpdate.c
112	./hg/makeDb/genbank/src/extFileUpdate/raInfoTbl.c
367	./hg/makeDb/genbank/src/lib/gbDefs.c
468	./hg/makeDb/genbank/src/lib/mgcStatusTbl.c
246	./hg/makeDb/genbank/src/lib/gbSql.c
201	./hg/makeDb/genbank/src/lib/gbConf.c
389	./hg/makeDb/genbank/src/lib/gbPipeline.c
176	./hg/makeDb/genbank/src/lib/imageCloneTbl.c
381	./hg/makeDb/genbank/src/lib/gbStatusTbl.c
145	./hg/makeDb/genbank/src/lib/gbIgnore.c
168	./hg/makeDb/genbank/src/lib/sqlUpdater.c
186	./hg/makeDb/genbank/src/lib/gbAligned.c
208	./hg/makeDb/genbank/src/lib/seqTbl.c
146	./hg/makeDb/genbank/src/lib/gbUpdate.c
183	./hg/makeDb/genbank/src/lib/sqlDeleter.c
186	./hg/makeDb/genbank/src/lib/uniqueStrTbl.c
230	./hg/makeDb/genbank/src/lib/gbEntry.c
216	./hg/makeDb/genbank/src/lib/gbProcessed.c
284	./hg/makeDb/genbank/src/lib/gbFa.c
561	./hg/makeDb/genbank/src/lib/gbFileOps.c
284	./hg/makeDb/genbank/src/lib/extFileTbl.c
271	./hg/makeDb/genbank/src/lib/gbGenome.c
247	./hg/makeDb/genbank/src/lib/gbVerb.c
509	./hg/makeDb/genbank/src/lib/gbRelease.c
365	./hg/makeDb/genbank/src/lib/gbIndex.c
338	./hg/makeDb/genbank/src/lib/gbLoadedTbl.c
275	./hg/makeDb/genbank/src/orfeome/orfeomeDbLoad.c
134	./hg/makeDb/genbank/src/orfeome/orfeomeImageIds.c
299	./hg/makeDb/genbank/src/refSeqCheck/refSeqCheck.c
142	./hg/makeDb/genbank/src/ccds/ccdsLocationsJoin.c
270	./hg/makeDb/genbank/src/ccds/mkCcdsGeneMap.c
77	./hg/makeDb/genbank/src/ccds/ccdsCommon.c
286	./hg/makeDb/genbank/src/ccds/ccdsImport.c
937	./hg/makeDb/genbank/src/ccds/ccdsMkTables.c
769	./hg/makeDb/genbank/src/align/gbAlignInstall.c
389	./hg/makeDb/genbank/src/align/gbAlignGet.c
245	./hg/makeDb/genbank/src/align/gbAlignCommon.c
221	./hg/makeDb/genbank/src/selectWithPsl/selectWithPsl.c
110	./hg/makeDb/genbank/src/gbGetSeqs/seqData.c
502	./hg/makeDb/genbank/src/gbGetSeqs/gbGetSeqs.c
128	./hg/makeDb/genbank/src/gbGetSeqs/pslData.c
118	./hg/makeDb/genbank/src/gbGetSeqs/raData.c
202	./hg/makeDb/genbank/src/gbGetSeqs/pepData.c
114	./hg/makeDb/genbank/src/gbGetSeqs/oiData.c
321	./hg/makeDb/genbank/src/gbSanity/chkSeqTbl.c
452	./hg/makeDb/genbank/src/gbSanity/chkAlignTbls.c
144	./hg/makeDb/genbank/src/gbSanity/chkGbIndex.c
101	./hg/makeDb/genbank/src/gbSanity/metaData.c
473	./hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.c
59	./hg/makeDb/genbank/src/gbSanity/chkCommon.c
355	./hg/makeDb/genbank/src/gbSanity/gbSanity.c
387	./hg/makeDb/genbank/src/gbConf/gbConf.c
120	./hg/makeDb/genbank/tests/gbFaCheck/gbFaCheck.c
228	./hg/makeDb/genbank/tests/index/gbIndexTest.c
718	./hg/makeDb/genbank/tests/subset/gbGetTestSubset.c
75	./hg/makeDb/hgLoadCdsEvidence/hgLoadCdsEvidence.c
153	./hg/makeDb/hgStsMarkers/hgStsMarkers.c
99	./hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c
223	./hg/makeDb/hgGoldGapGl/hgLoadGap.c
483	./hg/makeDb/hgGoldGapGl/hgGoldGapGl.c
70	./hg/makeDb/hgGoldGapGl/ntContig.c
409	./hg/makeDb/hgPepPred/hgPepPred.c
155	./hg/makeDb/hgAddLiftOverChain/hgAddLiftOverChain.c
37	./hg/hgsqldump/hgsqldump.c
231	./hg/pslSortAcc/pslSortAcc.c
421	./hg/hgHubConnect/hgHubConnect.c
205	./hg/gbGetEntries/gbGetEntries.c
725	./hg/autoXml/autoXml.c
256	./hg/autoXml/t/t.c
241	./hg/autoXml/test/polygon/expected/polygon.c
1281	./hg/autoXml/test/dasGff/expected/dasGff.c
241	./hg/genePredHisto/genePredHisto.c
50	./hg/hgsqlTableDate/hgsqlTableDate.c
36	./hg/hgGenome/maf.c
101	./hg/hgGenome/wiggle.c
246	./hg/hgGenome/upload.c
580	./hg/hgGenome/hgGenome.c
690	./hg/hgGenome/mainPage.c
219	./hg/hgGenome/bedList.c
155	./hg/hgGenome/configure.c
218	./hg/hgGenome/sortGenes.c
71	./hg/hgGenome/browseRegions.c
270	./hg/hgGenome/custom.c
63	./hg/hgGenome/usage.c
48	./hg/hgGenome/clickOnImage.c
1515	./hg/hgGenome/import.c
23	./hg/hgGenome/chromGraph.c
156	./hg/hgGenome/correlate.c
219	./hg/ctgToChromFa/ctgToChromFa.c
1251	./hg/hgSession/hgSession.c
377	./hg/agpToFa/agpToFa.c
88	./hg/pslIntronsOnly/pslIntronsOnly.c
109	./hg/bedOrBlocks/bedOrBlocks.c
295	./hg/qa/testSearch.c
389	./hg/qa/apacheMonitor.c
51	./hg/qa/getChroms.c
130	./hg/qa/reviewIndexes.c
41	./hg/qa/countNib.c
117	./hg/qa/checkCardinality.c
24	./hg/qa/dumpNib.c
250	./hg/qa/timePosTable.c
106	./hg/qa/gbSeqCheck.c
105	./hg/qa/seqCheck.c
77	./hg/qa/checkChain.c
1069	./hg/das/das.c
971	./hg/hgGeneRing/hgGeneRing.c
189	./hg/hgGeneRing/interaction.c
159	./hg/pslHitPercent/pslHitPercent.c
64	./hg/qacToQa/qacToQa.c
110	./hg/gbOneAcc/gbOneAcc.c
521	./hg/spideyToPsl/spideyToPsl.c
778	./hg/mouseStuff/ggcPic/ggcPic.c
58	./hg/mouseStuff/axtSort/axtSort.c
48	./hg/mouseStuff/axtPretty/axtPretty.c
58	./hg/mouseStuff/axtRescore/axtRescore.c
108	./hg/mouseStuff/mafToPsl/mafToPsl.c
71	./hg/mouseStuff/gcForBed/gcForBed.c
49	./hg/mouseStuff/axtIndex/axtIndex.c
158	./hg/mouseStuff/axtToMaf/axtToMaf.c
140	./hg/mouseStuff/chainDbToFile/chainDbToFile.c
729	./hg/mouseStuff/regionPicker/regionPicker.c
426	./hg/mouseStuff/netFilter/netFilter.c
79	./hg/mouseStuff/mafToXmfa/mafToXmfa.c
185	./hg/mouseStuff/chainAntiRepeat/chainAntiRepeat.c
374	./hg/mouseStuff/blastzPaper/blastzPaper.c
99	./hg/mouseStuff/axtDropOverlap/axtDropOverlap.c
42	./hg/mouseStuff/chainSwap/chainSwap.c
488	./hg/mouseStuff/axtBest/axtBest.c
219	./hg/mouseStuff/mafRanges/mafRanges.c
87	./hg/mouseStuff/mafToFa/mafToFa.c
158	./hg/mouseStuff/aliFragScore/aliFragScore.c
231	./hg/mouseStuff/netToAxt/netToAxt.c
990	./hg/mouseStuff/netClass/netClass.c
291	./hg/mouseStuff/axtRecipBest/axtRecipBest.c
60	./hg/mouseStuff/netSplit/netSplit.c
526	./hg/mouseStuff/chainScore/chainScore.c
365	./hg/mouseStuff/netStats/netStats.c
370	./hg/mouseStuff/phToPsl/phToPsl.c
182	./hg/mouseStuff/netChainSubset/netChainSubset.c
226	./hg/mouseStuff/exonMap/exonMap.c
130	./hg/mouseStuff/mafToAxt/mafToAxt.c
577	./hg/mouseStuff/chainToPsl/chainToPsl.c
186	./hg/mouseStuff/chainPreNet/chainPreNet.c
98	./hg/mouseStuff/axtSplitByTarget/axtSplitByTarget.c
512	./hg/mouseStuff/axtBestNear/axtBestNear.c
70	./hg/mouseStuff/splitSim/splitSim.c
241	./hg/mouseStuff/chainMergeSort/chainMergeSort.c
61	./hg/mouseStuff/axtSwap/axtSwap.c
243	./hg/mouseStuff/knownVsBlat/kvsSummary.c
157	./hg/mouseStuff/knownVsBlat/blatStats.c
739	./hg/mouseStuff/knownVsBlat/knownVsBlat.c
212	./hg/mouseStuff/chainStats/chainStats.c
119	./hg/mouseStuff/chainStitchId/chainStitchId.c
150	./hg/mouseStuff/chainOverlap/chainOverlap.c
503	./hg/mouseStuff/axtChain/axtChain.c
70	./hg/mouseStuff/axtToBed/axtToBed.c
341	./hg/mouseStuff/axtCalcMatrix/axtCalcMatrix.c
220	./hg/mouseStuff/xmfaToMaf/xmfaToMaf.c
538	./hg/mouseStuff/simpleChain/simpleChain.c
127	./hg/mouseStuff/rikenBestInCluster/rikenBestInCluster.c
142	./hg/mouseStuff/subsetTraces/subsetTraces.c
587	./hg/mouseStuff/chainStitch/chainStitch.c
353	./hg/mouseStuff/bedCoverage/bedCoverage.c
218	./hg/mouseStuff/axtToChain/axtToChain.c
186	./hg/mouseStuff/correctEst/correctEst.c
169	./hg/mouseStuff/whyConserved/whyConserved.c
118	./hg/mouseStuff/whyConserved/trackOverlap.c
73	./hg/mouseStuff/axtQueryCount/axtQueryCount.c
843	./hg/mouseStuff/chainNet/chainNet.c
122	./hg/mouseStuff/netToBed/netToBed.c
519	./hg/mouseStuff/mafCoverage/mafCoverage.c
157	./hg/mouseStuff/chainToAxt/chainToAxt.c
179	./hg/mouseStuff/libScan/libScan.c
858	./hg/mouseStuff/orthologBySynteny/orthologBySynteny.c
134	./hg/mouseStuff/pslMrnaCover/pslMrnaCover.c
128	./hg/mouseStuff/mafFetch/mafFetch.c
197	./hg/mouseStuff/calcGap/calcGap.c
370	./hg/mouseStuff/lavToPsl/lavToPsl.c
60	./hg/mouseStuff/axtSomeRecords/axtSomeRecords.c
139	./hg/mouseStuff/subsetAxt/subsetAxt.c
126	./hg/mouseStuff/netContigs/netContigs.c
313	./hg/mouseStuff/netSyntenic/netSyntenic.c
156	./hg/mouseStuff/axtAndBed/axtAndBed.c
1177	./hg/mouseStuff/mousePoster/mousePoster.c
159	./hg/mouseStuff/axtFilter/axtFilter.c
62	./hg/mouseStuff/mafToClustalw/mafToClustalw.c
59	./hg/mouseStuff/chainIndex/chainIndex.c
264	./hg/mouseStuff/netToBedWithId/netToBedWithId.c
110	./hg/mouseStuff/chainSplit/chainSplit.c
99	./hg/mouseStuff/axtToPsl/axtToPsl.c
121	./hg/mouseStuff/chainSort/chainSort.c
46	./hg/mouseStuff/axtDropSelf/axtDropSelf.c
327	./hg/mouseStuff/chainFilter/chainFilter.c
685	./hg/mouseStuff/lavToAxt/lavToAxt.c
592	./hg/mouseStuff/chainInfo/chainInfo.c
90	./hg/mouseStuff/afsCombine/afsCombine.c
121	./hg/rtdbWebUpdate/rtdbWebUpdate.c
582	./hg/splitFaIntoContigs/splitFaIntoContigs.c
70	./hg/affyTransciptome/htmlFromBeds.c
86	./hg/affyTransciptome/trackFromLifts.c
92	./hg/affyTransciptome/maxTranscriptomeExps.c
114	./hg/affyTransciptome/groupSamples.c
72	./hg/affyTransciptome/nmerParasolGenome.c
221	./hg/affyTransciptome/averageZoomLevels.c
150	./hg/affyTransciptome/avgTranscriptomeExps.c
255	./hg/affyTransciptome/affyPairsToSample.c
62	./hg/affyTransciptome/scaleSampleFiles.c
130	./hg/affyTransciptome/normalizeSampleFile.c
321	./hg/affyTransciptome/mergeAffyFiles.c
163	./hg/affyTransciptome/affyTransLiftedToSample.c
399	./hg/affyTransciptome/pickCassettePcrPrimers.c
472	./hg/affyTransciptome/samplesForCoordinates.c
270	./hg/affyTransciptome/nmerAlign.c
262	./hg/affyTransciptome/bulkChr2XRegression.c
662	./oneShot/clusterClone/clusterClone.c
81	./oneShot/forChuck/forChuck.c
200	./oneShot/burstServer/burstServer.c
60	./oneShot/tabTable/tabTable.c
42	./oneShot/conrand/foo.c
54	./oneShot/conrand/conrand.c
416	./oneShot/rgbaGfxTest/rgbaGfxTest.c
18	./oneShot/dateXmlCgi/dateXmlCgi.c
7	./oneShot/testScripters/helloWorld/helloWorld.c
34	./oneShot/testScripters/countLines/cl.c
34	./oneShot/testScripters/countLines/countLines.c
68	./oneShot/testScripters/wordUse/wordUse.c
71	./oneShot/splitSql/splitSql.c
71	./oneShot/shorten/shorten.c
43	./oneShot/intersect/intersect.c
44	./oneShot/cosmoCtr/cosmoCtr.c
74	./oneShot/mungeAuthors/mungeAuthors.c
44	./oneShot/splitTxt/splitTxt.c
59	./oneShot/preProcGgfAndy/preProcGgfAndy.c
63	./oneShot/newSang6/newSang6.c
360	./oneShot/rnaEdit/editbase/editbase.c
332	./oneShot/rnaEdit/sorterna/sorterna.c
90	./oneShot/scrapeCruzBiotech/scrapeCruzBiotech.c
15	./oneShot/randDNA/randDNA.c
445	./oneShot/newStitch/newStitch.c
577	./oneShot/newStitch3/newStitch3.c
168	./oneShot/debog/debog.c
212	./oneShot/jccTest/jccTest.c
159	./oneShot/threadExp/threadExp.c
39	./oneShot/threadExp/cacheQueue.c
82	./oneShot/testBandExt/testBandExt.c
143	./oneShot/forAg/forAg.c
34	./oneShot/doublea/doublea.c
61	./oneShot/nt4ToFas/nt4ToFas.c
48	./oneShot/deEns/deEns.c
130	./oneShot/rbTest/rbTest.c
7	./oneShot/wormPromo/wormpromo.c
140	./oneShot/unwrap/unwrap.c
378	./oneShot/jksql/jksql.c
114	./oneShot/ooRev/ooRev.c
164	./oneShot/motifConvert/motifConvert.c
107	./oneShot/bison/mfcalc/yy.c
77	./oneShot/bison/mfcalc/calc.c
49	./oneShot/testGitRename/justAnotherTest.c
103	./oneShot/m22dirs/m22dirs.c
164	./oneShot/balancedTree/balancedTree.c
55	./oneShot/memeint/memeint.c
108	./oneShot/unmasked/unmasked.c
185	./oneShot/smoothWindow/smoothWindow.c
269	./oneShot/rt1dTest/rt1dTest.c
164	./oneShot/patJobs/patJobs.c
92	./oneShot/coverage/coverage.c
57	./oneShot/passHi/passHi.c
220	./oneShot/cntGlue/cntGlue.c
53	./oneShot/subdyn/subdyn.c
97	./oneShot/blat2p/blat2p.c
53	./oneShot/cmpfa/cmpfa.c
156	./oneShot/threadTime/threadTime.c
38	./oneShot/cdnalen/cdnalen.c
55	./oneShot/testCache/testCache.c
149	./oneShot/countClient/countClient.c
140	./oneShot/countServer/countServer.c
192	./oneShot/checkLayout/checkLayout.c
42	./oneShot/invert/invert.c
105	./oneShot/formatFastaSeq/formatFastaSeq.c
32	./oneShot/findContigsWithClones/findContigsWithClones.c
156	./oneShot/grokGff/grokGff.c
69	./oneShot/sortFoo/sortFoo.c
63	./oneShot/echoServer/echoServer.c
665	./oneShot/newStitch2/newStitch2.c
138	./oneShot/clusterBox/clusterBox.c
406	./oneShot/clusterBox/boxClump.c
561	./oneShot/chkGlue/chkGlue.c
78	./oneShot/chkGlue/forChuck.c
87	./oneShot/geneFreq/geneFreq.c
162	./oneShot/leaders/leaders.c
253	./oneShot/ck3and5/ck3and5.c
94	./oneShot/uniqSize/uniqSize.c
154	./oneShot/noali/noali.c
68	./oneShot/sizeSplitFa/sizeSplitFa.c
141	./oneShot/newStitch4/newStitch4.c
31	./oneShot/jimgrep/jimgrep.c
35	./oneShot/test/test.c
69	./oneShot/onePassBedToBigBed/onePassBedToBigBed.c
34	./oneShot/truncat/truncat.c
55	./oneShot/addFinFinf/addFinFinf.c
238	./oneShot/commonLines/commonLines.c
64	./oneShot/testPoly/testPoly.c
37	./oneShot/sources/sources.c
53	./oneShot/fixInfo/fixInfo.c
80	./oneShot/faends/faends.c
104	./oneShot/burstClient/burstClient.c
73	./oneShot/cbCountOver/cbCountOver.c
26	./oneShot/foo2/foo2.c
164	./oneShot/filterdb/filterdb.c
38	./oneShot/foo/foo.c
109	./oneShot/opendirTest/opendirTest.c
94	./oneShot/badbad/badbad.c
48	./oneShot/mafTest/mafTest.c
202	./oneShot/mafTest/mafXml.c
44	./oneShot/mafFindZero/mafFindZero.c
136	./oneShot/rbIntTest/rbIntTest.c
31	./oneShot/killRabbit/killRabbit.c
372	./getgene/getgene.c
90	./protDust/protDust.c
92	./weblet/counter/counter.c
156	./weblet/hitreport/hitreport.c
308	./weblet/bottleneck/bottleneck.c
188	./ai/letterChain/letterChain.c
315	./ai/pairCompress/pairCompress.c
342	./ai/wordChain/wordChain.c
764	./ai/growNet/growNet.c
367	./ai/paraFlow/aceTools/dict.c
117	./ai/paraFlow/aceTools/msort.c
75	./ai/paraFlow/compiler/pentCode.c
999	./ai/paraFlow/compiler/pfToken.c
1224	./ai/paraFlow/compiler/isx.c
170	./ai/paraFlow/compiler/optBranch.c
2228	./ai/paraFlow/compiler/pfParse.c
414	./ai/paraFlow/compiler/pfBindVars.c
51	./ai/paraFlow/compiler/util.c
38	./ai/paraFlow/compiler/pentStruct.c
2687	./ai/paraFlow/compiler/isxToPentium.c
70	./ai/paraFlow/compiler/backEnd.c
567	./ai/paraFlow/compiler/main.c
912	./ai/paraFlow/compiler/constFold.c
429	./ai/paraFlow/compiler/pentCast.c
171	./ai/paraFlow/compiler/builtIn.c
301	./ai/paraFlow/compiler/codedType.c
219	./ai/paraFlow/compiler/cCaseCode.c
247	./ai/paraFlow/compiler/ctar.c
152	./ai/paraFlow/compiler/checkPoly.c
206	./ai/paraFlow/compiler/parseInto.c
3071	./ai/paraFlow/compiler/cCoder.c
3097	./ai/paraFlow/compiler/pfType.c
314	./ai/paraFlow/compiler/cPara.c
489	./ai/paraFlow/compiler/parseDump.c
168	./ai/paraFlow/compiler/tokInto.c
192	./ai/paraFlow/compiler/pentConst.c
108	./ai/paraFlow/compiler/recodedType.c
384	./ai/paraFlow/compiler/isxLiveVar.c
83	./ai/paraFlow/compiler/refCount.c
259	./ai/paraFlow/compiler/checkPara.c
129	./ai/paraFlow/compiler/cMain.c
27	./ai/paraFlow/compiler/i386/forEx.c
318	./ai/paraFlow/compiler/defFile.c
262	./ai/paraFlow/compiler/asmCoder.c
169	./ai/paraFlow/compiler/pfScope.c
284	./ai/paraFlow/compiler/gnuMac.c
336	./ai/paraFlow/runtime/runErr.c
500	./ai/paraFlow/runtime/runType.c
35	./ai/paraFlow/runtime/cacheQueue.c
666	./ai/paraFlow/runtime/array.c
69	./ai/paraFlow/runtime/winMac.c
60	./ai/paraFlow/runtime/object.c
49	./ai/paraFlow/runtime/numbers.c
436	./ai/paraFlow/runtime/fileLib.c
440	./ai/paraFlow/runtime/print.c
1146	./ai/paraFlow/runtime/pfString.c
232	./ai/paraFlow/runtime/initVar.c
200	./ai/paraFlow/runtime/argsEnv.c
647	./ai/paraFlow/runtime/dir.c
54	./ai/paraFlow/runtime/testParaRun.c
571	./ai/paraFlow/runtime/paraRun.c
119	./ai/paraFlow/runtime/msort.c
545	./ai/paraFlow/runtime/getObj.c
63	./ai/paraFlow/runAsm/asmLong.c
37	./ai/paraFlow/runAsm/asmString.c
101	./ai/paraFlow/runAsm/asmToOld.c
548	./webBlat/webBlat.c
235	./dnaDust/dnadust.c
32	./dnaDust/test.c
175	./gfClient/gfClient.c
414	./primeMate/primeMate.c
8	./test/clock.c
117	./test/test.c
142	./test/testRangeTree.c
694	./test/testGenomeRangeTree.c
377	./scanIntrons/scanIntrons.c
775	./codelog.c
1	./cgi-bin/placeHolder.c
379	./blatTheory/blatTheory.c
471	./fuse/udcFuse/udcFuse.c
156	./blatz/index.c
193	./blatz/standalone.c
386	./blatz/gapless.c
890	./blatz/align.c
122	./blatz/client.c
235	./blatz/output.c
186	./blatz/bzp.c
339	./blatz/server.c
755	./blat/blat.c
205	./parasol/para/jobResult.c
385	./parasol/para/jobDb.c
2296	./parasol/para/para.c
62	./parasol/simpleS/simpleS.c
473	./parasol/broadNode/broadNode.c
44	./parasol/simpleC/simpleC.c
156	./parasol/paraNodeStatus/paraNodeStatus.c
75	./parasol/netC/netC.c
365	./parasol/gensub2/gensub2.c
160	./parasol/lib/machSpec.c
219	./parasol/lib/paraMessage.c
1	./parasol/lib/powerpc/placeHolder.c
1	./parasol/lib/i386/placeHolder.c
1	./parasol/lib/x86_64/placeHolder.c
270	./parasol/lib/broadData.c
129	./parasol/lib/paraLib.c
72	./parasol/netS/netS.c
53	./parasol/paraNodeStop/paraNodeStop.c
41	./parasol/paraHubStop/paraHubStop.c
116	./parasol/paraNodeStart/paraNodeStart.c
750	./parasol/broadHub/broadHub.c
889	./parasol/paraNode/paraNode.c
3372	./parasol/paraHub/paraHub.c
40	./parasol/paraHub/heartbeat.c
180	./parasol/paraHub/spoke.c
31	./parasol/paraHub/queue.c
53	./parasol/paraHub/sockSuck.c
729	./parasol/dataSim/dataSim.c
54	./parasol/broadNodeStart/broadNodeStart.c
116	./parasol/paraTestJob/paraTestJob.c
550	./parasol/parasol/parasol.c
95	./ascUtils/newalts/newalts.c
303	./ascUtils/fixAlt/fixalt.c
148	./ascUtils/lib/ascUtils.c
199	./ascUtils/mergealt2/mergealt2.c
296	./ascUtils/alt3data/alt3data.c
193	./ascUtils/weedAlts/weedAlts.c
99	./ascUtils/fullalte/fullalte.c
122	./ascUtils/mergealt/mergealt.c
4	./ameme/hmmerFace.h
7	./ameme/fragFind.h
10	./ameme/ameme.h
51	./utils/raSqlQuery/raRecord.h
44	./reformat/makefont/gemfont.h
110	./reformat/makefont/common.h
64	./jkOwnLib/gfInternal.h
54	./xenoAli/waba/wabaCrude.h
79	./shortReads/i16Find/i16.h
66	./shortReads/splat/splat.h
69	./lib/gemfont.h
44	./lib/vGfxPrivate.h
38	./lib/colHash.h
39	./lib/portimpl.h
48	./lib/gifcodes.h
131	./cdnaAli/inc/cdnaAli.h
27	./hg/utils/refSeqGet/refSeqVerInfo.h
40	./hg/utils/overlapSelect/chromAnnMap.h
31	./hg/utils/overlapSelect/rowReader.h
71	./hg/utils/overlapSelect/selectTable.h
47	./hg/utils/overlapSelect/coordCols.h
115	./hg/utils/overlapSelect/chromAnn.h
39	./hg/utils/repeatSelect/repeatGroup.h
37	./hg/utils/repeatSelect/rmskOutExtra.h
21	./hg/utils/repeatSelect/bitHash.h
57	./hg/utils/tdbQuery/tdbRecord.h
69	./hg/utils/coloredExonToBed/coloredExon.h
9	./hg/pslCDnaFilter/localNearBestFilter.h
7	./hg/pslCDnaFilter/globalNearBestFilter.h
32	./hg/pslCDnaFilter/cDnaReader.h
71	./hg/pslCDnaFilter/polyASize.h
29	./hg/pslCDnaFilter/hapRegions.h
42	./hg/pslCDnaFilter/cDnaStats.h
19	./hg/pslCDnaFilter/overlapFilter.h
162	./hg/pslCDnaFilter/cDnaAligns.h
77	./hg/xmlToSql/tables.h
20	./hg/xmlToSql/rename.h
29	./hg/xmlToSql/elStat.h
9	./hg/genePredToMafFrames/mkMafFrames.h
17	./hg/genePredToMafFrames/frameIncr.h
13	./hg/genePredToMafFrames/splitMultiMappings.h
9	./hg/genePredToMafFrames/finishMafFrames.h
115	./hg/genePredToMafFrames/orgGenes.h
287	./hg/autoSql/tests/expected/mainTest.h
140	./hg/autoSql/tests/expected/newTest.h
135	./hg/autoSql/tests/expected/doc.h
399	./hg/autoSql/tests/expected/simpleTest.h
200	./hg/autoSql/tests/expected/doc2.h
75	./hg/autoSql/tests/expected/symTest.h
120	./hg/autoSql/tests/expected/hardTest.h
157	./hg/autoSql/tests/expected/polyTest.h
18	./hg/autoSql/eztok.h
240	./hg/gigAssembler/ooGreedy/ooGreedy.h
146	./hg/gigAssembler/codJobs/jabba/jobDb.h
49	./hg/gigAssembler/pairedReads/ppStats/pPair.h
46	./hg/gigAssembler/pairedReads/ppSanger/sangInsert.h
47	./hg/gigAssembler/pairedReads/ppSanger/sangRange.h
48	./hg/gigAssembler/pairedReads/ppSanger/sangRead.h
53	./hg/gigAssembler/cmParse/imreClone.h
64	./hg/genePredSingleCover/geneScore.h
197	./hg/sageVisCGI/gnuPlot2D.h
458	./hg/sageVisCGI/gnuplot_i.h
124	./hg/sageVisCGI/rosChr22Dat.h
8	./hg/hgc/parClick.h
11	./hg/hgc/retroClick.h
12	./hg/hgc/gencodeClick.h
11	./hg/hgc/transMapClick.h
22	./hg/hgc/mgcClick.h
430	./hg/hgc/hgc.h
10	./hg/hgc/virusClick.h
29	./hg/hgc/ccdsClick.h
228	./hg/hgTables/correlate.h
1127	./hg/hgTables/hgTables.h
81	./hg/hgTables/asFilter.h
295	./hg/hgGene/hgGene.h
39	./hg/encode/regionOrtho/regionOrtho.h
83	./hg/encode/docId/inc/docId.h
70	./hg/encode/inc/bedLogR.h
72	./hg/lib/lowelabPfamHit.h
51	./hg/lib/newfoo/cytoBand.h
78	./hg/lib/snoRNAs.h
27	./hg/txGraph/txBedToGraph/txBedToGraph.h
821	./hg/near/hgNear/hgNear.h
627	./hg/near/hprdXmlToTab/hprd.h
63	./hg/txPaper/txGeneBakeOff/refCluster.h
67	./hg/geneBounds/inc/improbRunInfo.h
48	./hg/oneShot/rangeGraph/rgi.h
138	./hg/oneShot/cacheMergedRanges/rbmTree.h
52	./hg/oneShot/evalEndOverlaps/ocp.h
93	./hg/oneShot/testCart/cart.h
79	./hg/visiGene/vgLoadMahoney/mahoney.h
2015	./hg/visiGene/vgGetText/visiGene.h
69	./hg/visiGene/vgPrepImage/jpgTiles.h
21	./hg/visiGene/vgPrepImage/jpgDec.h
38	./hg/visiGene/vgPrepImage/jpgTilesX.h
21	./hg/visiGene/vgPrepImage/jp2Dec.h
890	./hg/visiGene/gensat/lib/gs.h
99	./hg/visiGene/vgProbeTrack/vgPrb.h
91	./hg/visiGene/vgProbeTrack/vgPrbMap.h
92	./hg/visiGene/vgProbeTrack/vgPrbAliAll.h
92	./hg/visiGene/vgProbeTrack/vgPrbAli.h
9	./hg/visiGene/hgVisiGene/probePage.h
59	./hg/visiGene/hgVisiGene/captionElement.h
10	./hg/visiGene/hgVisiGene/configPage.h
38	./hg/visiGene/hgVisiGene/visiSearch.h
52	./hg/visiGene/hgVisiGene/hgVisiGene.h
14	./hg/visiGene/hgVisiGene/printCaption.h
38	./hg/hgTrackUi/hgTrackUi.h
58	./hg/pslDiff/pslSets.h
61	./hg/inc/plasEndPairs.h
81	./hg/inc/gbSeq.h
67	./hg/inc/sgdOther.h
68	./hg/inc/clonePos.h
182	./hg/inc/joiner.h
62	./hg/inc/geneTree.h
63	./hg/inc/kgProtAlias.h
62	./hg/inc/ecAttributeCode.h
62	./hg/inc/cogsxra.h
180	./hg/inc/snpUi.h
65	./hg/inc/scopDes.h
71	./hg/inc/trackTable.h
70	./hg/inc/vntr.h
66	./hg/inc/recombRateMouse.h
59	./hg/inc/chainLink.h
11	./hg/inc/findKGAlias.h
94	./hg/inc/ccdsGeneMap.h
251	./hg/inc/oreganno.h
70	./hg/inc/wgRna.h
55	./hg/inc/sage.h
85	./hg/inc/affyAtlas.h
62	./hg/inc/jaxQTL2.h
52	./hg/inc/defaultDb.h
63	./hg/inc/gbExtFile.h
68	./hg/inc/ecAttribute.h
216	./hg/inc/jsHelper.h
61	./hg/inc/mouseOrtho.h
160	./hg/inc/visiGene.h
102	./hg/inc/affyAllExonProbe.h
61	./hg/inc/ensPhusionBlast.h
111	./hg/inc/cutter.h
92	./hg/inc/featureBits.h
67	./hg/inc/bed8Attrs.h
65	./hg/inc/rnaSecStr.h
63	./hg/inc/HInv.h
66	./hg/inc/tagAlign.h
131	./hg/inc/pgSnp.h
98	./hg/inc/trackVersion.h
234	./hg/inc/spDb.h
69	./hg/inc/transMapGene.h
93	./hg/inc/taxonDivision.h
72	./hg/inc/lowelabPfamHit.h
62	./hg/inc/cdsSpec.h
51	./hg/inc/gvUi.h
74	./hg/inc/txEdgeBed.h
56	./hg/inc/borkPseudoHom.h
67	./hg/inc/allpredictions.h
84	./hg/inc/dless.h
71	./hg/inc/switchDbTss.h
24	./hg/inc/bedGraph.h
20	./hg/inc/trashDir.h
75	./hg/inc/stsMapMouseNew.h
60	./hg/inc/jaxOrtholog.h
66	./hg/inc/gbMiscDiff.h
61	./hg/inc/rnaGroup.h
426	./hg/inc/fbTables.h
11	./hg/inc/loweutils.h
65	./hg/inc/cnpSharp2.h
63	./hg/inc/rankProp.h
878	./hg/inc/hdb.h
97	./hg/inc/affy10KDetails.h
61	./hg/inc/stsMapMouse.h
95	./hg/inc/snpMap.h
62	./hg/inc/snpSeq.h
62	./hg/inc/mouseSynWhd.h
98	./hg/inc/ccdsInfo.h
74	./hg/inc/jaxQTL3.h
54	./hg/inc/ancientRref.h
67	./hg/inc/geneSimilarities.h
47	./hg/inc/softberryHom.h
52	./hg/inc/knownInfo.h
66	./hg/inc/bed6FloatScore.h
200	./hg/inc/microarray.h
62	./hg/inc/acemblyClass.h
129	./hg/inc/hgGene.h
68	./hg/inc/gbRNAs.h
81	./hg/inc/cdsEvidence.h
62	./hg/inc/affyPairs.h
83	./hg/inc/geneCheck.h
92	./hg/inc/taxonName.h
63	./hg/inc/agpFrag.h
42	./hg/inc/hgSeq.h
76	./hg/inc/estOrientInfo.h
54	./hg/inc/mapSts.h
67	./hg/inc/kg1ToKg2.h
59	./hg/inc/pcrResult.h
40	./hg/inc/chromBins.h
63	./hg/inc/cogs.h
91	./hg/inc/rmskOut.h
112	./hg/inc/pseudoGeneLink.h
13	./hg/inc/dnaMarkovSql.h
82	./hg/inc/hgFind.h
153	./hg/inc/rangeTreeFile.h
66	./hg/inc/recombRate.h
126	./hg/inc/hCommon.h
78	./hg/inc/pslWQueryID.h
72	./hg/inc/ld2.h
100	./hg/inc/expRecord.h
70	./hg/inc/jgiGene.h
70	./hg/inc/megablastInfo.h
185	./hg/inc/customTrack.h
16	./hg/inc/ldUi.h
69	./hg/inc/zdobnovSynt.h
64	./hg/inc/dvBed.h
546	./hg/inc/jksql.h
23	./hg/inc/ensFace.h
405	./hg/inc/altGraphX.h
69	./hg/inc/hgdpGeo.h
71	./hg/inc/cddInfo.h
85	./hg/inc/columnInfo.h
53	./hg/inc/cpgIsland.h
64	./hg/inc/flyBaseSwissProt.h
55	./hg/inc/pslReader.h
57	./hg/inc/synMap.h
47	./hg/inc/sageCounts.h
78	./hg/inc/transMapInfo.h
65	./hg/inc/cnpSebat2.h
105	./hg/inc/llaInfo.h
82	./hg/inc/orthoAlleles.h
1	./hg/inc/versionInfo.h
69	./hg/inc/bed12Source.h
46	./hg/inc/pepPred.h
66	./hg/inc/lowelabTIGROperonScore.h
68	./hg/inc/stsInfoMouse.h
62	./hg/inc/bacCloneAlias.h
56	./hg/inc/refLink.h
75	./hg/inc/netAlign.h
207	./hg/inc/ggMrnaAli.h
56	./hg/inc/bactigPos.h
70	./hg/inc/rhMapZfishInfo.h
49	./hg/inc/gcPercent.h
34	./hg/inc/netCart.h
56	./hg/inc/lfs.h
88	./hg/inc/targetDb.h
97	./hg/inc/ld.h
49	./hg/inc/exoFish.h
70	./hg/inc/peptideMapping.h
65	./hg/inc/pgPhenoAssoc.h
26	./hg/inc/baseMaskCommon.h
116	./hg/inc/hubConnect.h
67	./hg/inc/blastTab.h
74	./hg/inc/cnpSharp.h
54	./hg/inc/rnaGene.h
27	./hg/inc/sqlProg.h
41	./hg/inc/chromInserts.h
66	./hg/inc/flyreg.h
66	./hg/inc/geneCheckDetails.h
100	./hg/inc/makeItemsItem.h
10	./hg/inc/ooUtils.h
61	./hg/inc/humanParalog.h
561	./hg/inc/trackDb.h
91	./hg/inc/sangerGeneToWBGeneID.h
35	./hg/inc/hCytoBand.h
65	./hg/inc/simpleNucDiff.h
98	./hg/inc/tfbsCons.h
63	./hg/inc/arcogdesc.h
67	./hg/inc/sangerGene.h
66	./hg/inc/cnpRedon.h
68	./hg/inc/flyBase2004Xref.h
93	./hg/inc/dnaProbe.h
34	./hg/inc/hgColors.h
70	./hg/inc/encode/encodeErgeMethProm.h
62	./hg/inc/encode/wgEncodeGencodeTranscriptSource.h
70	./hg/inc/encode/encodeErgeTransTransf.h
62	./hg/inc/encode/wgEncodeGencodePdb.h
62	./hg/inc/encode/wgEncodeGencodeGeneSource.h
70	./hg/inc/encode/encodeErge5race.h
70	./hg/inc/encode/encodeErgeBinding.h
70	./hg/inc/encode/encodeErgeInVitroFoot.h
70	./hg/inc/encode/encodeErgeSummary.h
69	./hg/inc/encode/wgEncodeGencodeUniProt.h
70	./hg/inc/encode/encodeErgeDNAseI.h
70	./hg/inc/encode/encodeErgeStableTransf.h
228	./hg/inc/encode/encodeExp.h
73	./hg/inc/encode/wgEncodeGencodeAttrs.h
63	./hg/inc/encode/wgEncodeGencodeTranscriptSupport.h
103	./hg/inc/encode/encodeRna.h
79	./hg/inc/encode/encodeErgeHssCellLines.h
107	./hg/inc/encode/encodePrimateAlleles.h
72	./hg/inc/encode/encodeStanfordPromotersAverage.h
75	./hg/inc/encode/encodeIndels.h
62	./hg/inc/encode/wgEncodeGencodePubMed.h
62	./hg/inc/encode/wgEncodeGencodeTag.h
99	./hg/inc/encode/encodeErge.h
73	./hg/inc/encode/encodeHapMapAlleleFreq.h
67	./hg/inc/encode/wgEncodeGencodeExonSupport.h
78	./hg/inc/encode/encodeStanfordPromoters.h
63	./hg/inc/encode/wgEncodeGencodeRefSeq.h
121	./hg/inc/encode/encodePeak.h
66	./hg/inc/encode/encodeRegionInfo.h
70	./hg/inc/encode/encodeErgeExpProm.h
227	./hg/inc/geneGraph.h
93	./hg/inc/chainNet.h
49	./hg/inc/cytoBand.h
75	./hg/inc/dgv.h
73	./hg/inc/codeBlastScore.h
69	./hg/inc/ensXRefZfish.h
49	./hg/inc/isochores.h
49	./hg/inc/mouseSyn.h
65	./hg/inc/tfbsConsFactors.h
15	./hg/inc/bedCart.h
63	./hg/inc/chr18deletions.h
68	./hg/inc/vegaInfoZfish.h
66	./hg/inc/ecCode.h
97	./hg/inc/hapmapLd.h
487	./hg/inc/gv.h
72	./hg/inc/tRNAs.h
63	./hg/inc/sgdDescription.h
1234	./hg/inc/hui.h
73	./hg/inc/cgapSage/cgapSage.h
103	./hg/inc/cgapSage/cgapSageLib.h
90	./hg/inc/stanMad.h
7	./hg/inc/omim.h
73	./hg/inc/hapmapAllelesOrtho.h
53	./hg/inc/geneBands.h
75	./hg/inc/tableStatus.h
122	./hg/inc/variome.h
67	./hg/inc/stsMarker.h
503	./hg/inc/wiggle.h
87	./hg/inc/gwasCatalog.h
49	./hg/inc/chainDb.h
68	./hg/inc/snp125Exceptions.h
138	./hg/inc/ucscRetroInfo.h
41	./hg/inc/fileUi.h
15	./hg/inc/txCommon.h
64	./hg/inc/kgColor.h
70	./hg/inc/rnaGenes.h
28	./hg/inc/wikiLink.h
106	./hg/inc/liftOverChain.h
62	./hg/inc/kgMapName.h
182	./hg/inc/txGraph.h
22	./hg/inc/axtLib.h
64	./hg/inc/knownMore.h
143	./hg/inc/bed.h
552	./hg/inc/cart.h
61	./hg/inc/fosEndPairs.h
63	./hg/inc/cartDb.h
81	./hg/inc/snp132Ext.h
103	./hg/inc/hapmapAlleles.h
63	./hg/inc/snpExtFile.h
75	./hg/inc/pgSiftPred.h
65	./hg/inc/knownToSuper.h
281	./hg/inc/hvGfx.h
1085	./hg/inc/ispyTables.h
58	./hg/inc/affyTransLifted.h
69	./hg/inc/snpFasta.h
51	./hg/inc/traceInfo.h
66	./hg/inc/recombRateRat.h
52	./hg/inc/bamFile.h
74	./hg/inc/samAlignment.h
146	./hg/inc/cv.h
101	./hg/inc/liftOver.h
64	./hg/inc/rnaFold.h
102	./hg/inc/taxonNode.h
107	./hg/inc/hapmapPrimateAlleles.h
102	./hg/inc/putaInfo.h
65	./hg/inc/cnpLocke.h
65	./hg/inc/sample.h
98	./hg/inc/affyTranscriptome.h
60	./hg/inc/fishClones.h
55	./hg/inc/imageClone.h
53	./hg/inc/ggDbRep.h
91	./hg/inc/stsMap.h
57	./hg/inc/exprBed.h
26	./hg/inc/chromKeeper.h
57	./hg/inc/blatServers.h
83	./hg/inc/mafFrames.h
90	./hg/inc/mammalPsg.h
110	./hg/inc/tigrCmrGene.h
65	./hg/inc/delHinds2.h
93	./hg/inc/affy10K.h
37	./hg/inc/chainView.h
52	./hg/inc/affyOffset.h
91	./hg/inc/hapmapSnpsCombined.h
76	./hg/inc/rnaPLFold.h
279	./hg/inc/web.h
229	./hg/inc/wikiTrack.h
120	./hg/inc/coordConv.h
67	./hg/inc/txCluster.h
58	./hg/inc/estPair.h
56	./hg/inc/roughAli.h
67	./hg/inc/flyreg2.h
13	./hg/inc/mafGene.h
13	./hg/inc/oregannoUi.h
46	./hg/inc/hgdb.h
66	./hg/inc/bed5Pval.h
61	./hg/inc/blastzNet.h
56	./hg/inc/wabAli.h
101	./hg/inc/stsInfo2.h
63	./hg/inc/transRegCodeProbe.h
22	./hg/inc/botDelay.h
19	./hg/inc/geneCheckWidget.h
73	./hg/inc/dbDb.h
68	./hg/inc/kgXref.h
55	./hg/inc/vegaInfo.h
66	./hg/inc/bgiGeneSnp.h
71	./hg/inc/lsSnpPdb.h
93	./hg/inc/trackHub.h
147	./hg/inc/retroMrnaInfo.h
63	./hg/inc/bacEndAlias.h
64	./hg/inc/omimTitle.h
74	./hg/inc/hapmapPhaseIIISummary.h
51	./hg/inc/customPp.h
66	./hg/inc/ccdsNotes.h
251	./hg/inc/oregannoOther.h
64	./hg/inc/bgiGeneInfo.h
66	./hg/inc/ctgPos2.h
75	./hg/inc/goa.h
88	./hg/inc/txInfo.h
65	./hg/inc/sgdClone.h
98	./hg/inc/dbSnpRs.h
58	./hg/inc/gbProtAnn.h
68	./hg/inc/minGeneInfo.h
87	./hg/inc/hapmapAllelesSummary.h
71	./hg/inc/gencodeGeneClass.h
64	./hg/inc/metaChromGraph.h
68	./hg/inc/cdsOrtho.h
49	./hg/inc/est3.h
68	./hg/inc/genbank.h
501	./hg/inc/mdb.h
121	./hg/inc/snp125.h
147	./hg/inc/customFactory.h
63	./hg/inc/dvXref2.h
72	./hg/inc/delConrad2.h
18	./hg/inc/transMapStuff.h
59	./hg/inc/mcnBreakpoints.h
57	./hg/inc/softPromoter.h
69	./hg/inc/bdgpExprLink.h
58	./hg/inc/genomicDups.h
87	./hg/inc/qaSeq.h
76	./hg/inc/bioImage.h
87	./hg/inc/borf.h
56	./hg/inc/mgiID.h
66	./hg/inc/cddDesc.h
49	./hg/inc/ctgPos.h
65	./hg/inc/protFeat.h
98	./hg/inc/hgMaf.h
299	./hg/inc/genePred.h
153	./hg/inc/affy120KDetails.h
72	./hg/inc/tfbsConsSites.h
59	./hg/inc/syntenyBerk.h
252	./hg/inc/landmark.h
97	./hg/inc/polyGenotype.h
37	./hg/inc/trackLayout.h
61	./hg/inc/axtInfo.h
101	./hg/inc/hgFindSpec.h
75	./hg/inc/easyGene.h
70	./hg/inc/snp125CodingCoordless.h
95	./hg/inc/genoLay.h
62	./hg/inc/transRegCodeCondition.h
59	./hg/inc/synteny100000.h
57	./hg/inc/cgh.h
67	./hg/inc/transRegCode.h
63	./hg/inc/growthCondition.h
84	./hg/inc/txEdgeOrtho.h
65	./hg/inc/pscreen.h
70	./hg/inc/rhMapInfo.h
71	./hg/inc/alignInfo.h
46	./hg/inc/lsSnpPdbChimera.h
71	./hg/inc/chromInfo.h
45	./hg/inc/chromGraphFactory.h
27	./hg/inc/vcfUi.h
3	./hg/inc/jalview.h
7	./hg/inc/ec.h
23	./hg/inc/hVarSubst.h
70	./hg/inc/splignAlign.h
26	./hg/inc/agp.h
11	./hg/inc/findKGProtAlias.h
7	./hg/inc/googleAnalytics.h
21	./hg/inc/suggest.h
307	./hg/inc/metaTbl.h
95	./hg/inc/taxonGeneticCode.h
101	./hg/inc/chicken13kInfo.h
144	./hg/inc/genomeRangeTreeFile.h
72	./hg/inc/cdsPick.h
68	./hg/inc/bdgpSwissProt.h
36	./hg/inc/ggPrivate.h
92	./hg/inc/cnpSharpCutoff.h
12	./hg/inc/landmarkUi.h
57	./hg/inc/celeraCoverage.h
67	./hg/inc/mrnaMisMatch.h
66	./hg/inc/pslWScore.h
89	./hg/inc/ucscRetroOrtho.h
69	./hg/inc/bacCloneXRef.h
81	./hg/inc/hapmapAllelesCombined.h
23	./hg/inc/chainCart.h
23	./hg/inc/alignSeqSizes.h
332	./hg/inc/protVar.h
194	./hg/inc/genotype.h
49	./hg/inc/chainNetDbLoad.h
60	./hg/inc/txRnaAccs.h
74	./hg/inc/hapmapAlleleFreq.h
59	./hg/inc/syntenySanger.h
91	./hg/inc/refSeqStatus.h
51	./hg/inc/stsAlias.h
109	./hg/inc/rnaHybridization.h
66	./hg/inc/ensInfo.h
94	./hg/inc/cnpSharpSample.h
57	./hg/inc/genePredReader.h
85	./hg/inc/stsInfoMouseNew.h
55	./hg/inc/chainGap.h
73	./hg/inc/sargassoSeaXra.h
105	./hg/inc/snp.h
63	./hg/inc/yaleGencodeAssoc.h
195	./hg/inc/chromGraph.h
58	./hg/inc/tilingPath.h
132	./hg/inc/affyGenoDetails.h
66	./hg/inc/cnpIafrate.h
60	./hg/inc/tigrOperon.h
68	./hg/inc/pairedTagAlign.h
68	./hg/inc/codeBlast.h
52	./hg/inc/celeraDupPositive.h
61	./hg/inc/rikenCluster.h
93	./hg/inc/taxonXref.h
70	./hg/inc/genMapDb.h
79	./hg/inc/bgiSnp.h
62	./hg/inc/kgAlias.h
75	./hg/inc/snpTmp.h
63	./hg/inc/itemConf.h
37	./hg/inc/hgConfig.h
91	./hg/inc/tfbsConsMap.h
63	./hg/inc/tableDescriptions.h
70	./hg/inc/cnpIafrate2.h
104	./hg/inc/mafSummary.h
33	./hg/inc/minChromSize.h
57	./hg/inc/sanger22extra.h
289	./hg/inc/riken.h
136	./hg/inc/snp125Ui.h
129	./hg/inc/dbRIP.h
48	./hg/inc/glDbRep.h
69	./hg/inc/pbStamp.h
62	./hg/inc/rikenBest.h
83	./hg/inc/itemAttr.h
71	./hg/inc/ncRna.h
69	./hg/inc/grp.h
57	./hg/inc/search.h
100	./hg/inc/gencodeIntron.h
79	./hg/inc/bedDetail.h
63	./hg/inc/jaxQTL.h
65	./hg/inc/lowelabArkinOperonScore.h
112	./hg/inc/chromColors.h
66	./hg/inc/bdgpGeneInfo.h
96	./hg/inc/bed12wSeq.h
62	./hg/inc/contigAcc.h
66	./hg/inc/bed5FloatScore.h
32	./hg/inc/dnaMotifSql.h
58	./hg/inc/sageExp.h
94	./hg/inc/hPrint.h
65	./hg/inc/goaPart.h
95	./hg/inc/cnpSebat.h
105	./hg/inc/alleleFreqs.h
56	./hg/inc/mysqlTableStatus.h
75	./hg/inc/stsInfoRat.h
70	./hg/inc/cpgIslandExt.h
73	./hg/inc/transMapSrc.h
69	./hg/inc/simpleRepeat.h
68	./hg/inc/gbWarn.h
52	./hg/inc/agpGap.h
49	./hg/inc/hgExp.h
91	./hg/inc/altGraph.h
25	./hg/inc/nonCodingUi.h
13	./hg/inc/pal.h
92	./hg/inc/stsInfo.h
61	./hg/inc/scoredRef.h
63	./hg/inc/sgdAbundance.h
82	./hg/inc/genomicSuperDups.h
95	./hg/inc/hgRelate.h
78	./hg/inc/snoRNAs.h
65	./hg/inc/stsMapRat.h
74	./hg/inc/expData.h
333	./hg/inc/omicia.h
94	./hg/inc/snpExceptions.h
65	./hg/inc/rgdQtl.h
8	./hg/inc/omiciaUi.h
67	./hg/inc/arCOGs.h
23	./hg/inc/liftUp.h
73	./hg/inc/pgPolyphenPred.h
69	./hg/inc/atomDb.h
109	./hg/inc/genotypeFreqs.h
42	./hg/inc/ggTypes.h
67	./hg/inc/dv.h
121	./hg/inc/genePix.h
106	./hg/inc/hapmapSnps.h
36	./hg/blastToPsl/pslBuild.h
1484	./hg/blastToPsl/ncbiBlast.h
64	./hg/ultras/ultraDb/as/udHistory.h
76	./hg/altSplice/inc/affyProbe.h
91	./hg/altSplice/inc/mouseAPSetEventMap.h
36	./hg/altSplice/inc/heap.h
32	./hg/altSplice/inc/dMatrix.h
194	./hg/altSplice/inc/exonGraph.h
71	./hg/altSplice/inc/altProbe.h
156	./hg/altSplice/inc/spliceGraph.h
75	./hg/altSplice/inc/altSpliceSite.h
52	./hg/altSplice/inc/affyPres.h
123	./hg/altSplice/inc/splice.h
183	./hg/altSplice/inc/pfamDat.h
281	./hg/gsid/gsidTable/gsidTable.h
1	./hg/gsid/inc/gsid.h
98	./hg/gsid/gsidSubj3/gsidSubj3.h
15	./hg/gsid/gsidMember/paypalSignEncrypt.h
14	./hg/gsid/gsidMember/bio.h
18	./hg/gsid/gsidMember/gsidMember.h
99	./hg/gsid/pwdtest/members.h
31	./hg/gsid/pwdtest/paypalSignEncrypt.h
12	./hg/gsid/pwdtest/bio.h
18	./hg/gsid/pwdtest/pwdtest.h
98	./hg/gsid/gsidSubj/gsidSubj.h
7	./hg/bioImage/hgBioImage/hgBioImage.h
79	./hg/bioImage/loadMahoney/mahoney.h
7	./hg/hgTracks/retroTracks.h
24	./hg/hgTracks/oneTrack.h
37	./hg/hgTracks/encode.h
400	./hg/hgTracks/imageV2.h
2	./hg/hgTracks/hapmapTrack.h
15	./hg/hgTracks/loweLabTracks.h
6	./hg/hgTracks/rnaPLFoldTrack.h
7	./hg/hgTracks/transMapTracks.h
7	./hg/hgTracks/cutterTrack.h
5	./hg/hgTracks/wiki.h
23	./hg/hgTracks/bigWarn.h
276	./hg/hgTracks/variation.h
24	./hg/hgTracks/container.h
196	./hg/hgTracks/cds.h
1333	./hg/hgTracks/hgTracks.h
34	./hg/hgTracks/mafTrack.h
154	./hg/hgTracks/wigCommon.h
39	./hg/hgTracks/retroGene.h
13	./hg/hgTracks/switchGear.h
11	./hg/hgTracks/expRatioTracks.h
23	./hg/zoo/inc/read_malign.h
47	./hg/zoo/inc/util.h
13	./hg/zoo/inc/args.h
12	./hg/zoo/inc/misc.h
55	./hg/test/foo.h
106	./hg/hgText/hgText.h
48	./hg/orthoMap/orthoEval.h
98	./hg/gisaid/gisaidSample/gisaidSample.h
98	./hg/gisaid/gisaidSubj/gisaidSubj.h
282	./hg/gisaid/gisaidTable/gisaidTable.h
196	./hg/protein/pfamToGoRdf/rdf.h
17	./hg/protein/inc/pbStampPict.h
20	./hg/protein/inc/unirefTbl.h
78	./hg/protein/inc/spMapper.h
25	./hg/protein/inc/spKgMap.h
166	./hg/protein/inc/pbTracks.h
67	./hg/protein/inc/uniref.h
50	./hg/protein/inc/pbCalPi.h
65	./hg/protein/spLoadRankProp/rankPropProt.h
56	./hg/makeDb/hgKnownMore/hugoMulti.h
49	./hg/makeDb/hgTomRough/tomRough.h
70	./hg/makeDb/hgCountAlign/winCounts.h
52	./hg/makeDb/hgCountAlign/slidingWin.h
35	./hg/makeDb/hgCountAlign/align.h
49	./hg/makeDb/hgCtgPos/liftSpec.h
20	./hg/makeDb/outside/cgapSage/cgapSageFind/cgapSageFind.h
61	./hg/makeDb/outside/hgLoadEranModules/esMotif.h
52	./hg/makeDb/hgClonePos/gsSeqInfo.h
54	./hg/makeDb/tfbsConsLoc/seq.h
50	./hg/makeDb/tfbsConsLoc/util.h
74	./hg/makeDb/tfbsConsLoc/tfbsConsLoc.h
71	./hg/makeDb/tfbsConsLoc/matt-maf.h
23	./hg/makeDb/tfbsConsLoc/tfbsConsLocUtil.h
67	./hg/makeDb/hgBedsToBedExps/bToBeCfg.h
63	./hg/makeDb/hgPar/parSpec.h
55	./hg/makeDb/hgKnownMore.oo21/hugoMulti.h
135	./hg/makeDb/genbank/src/process/gbParse.h
98	./hg/makeDb/genbank/src/mgc/mgcLibrary.h
62	./hg/makeDb/genbank/src/mgc/mgcClone.h
66	./hg/makeDb/genbank/src/mgc/mgcStage1.h
81	./hg/makeDb/genbank/src/mgc/mgcFullength.h
21	./hg/makeDb/genbank/src/repair/refPepRepair.h
72	./hg/makeDb/genbank/src/dbload/gbMetaData.h
69	./hg/makeDb/genbank/src/dbload/gbMDParse.h
57	./hg/makeDb/genbank/src/dbload/dbLoadOptions.h
56	./hg/makeDb/genbank/src/dbload/gbGeneTbl.h
65	./hg/makeDb/genbank/src/dbload/gbAlignData.h
23	./hg/makeDb/genbank/src/dbload/gbIgnoreDelete.h
37	./hg/makeDb/genbank/src/dbload/gbBuildState.h
64	./hg/makeDb/genbank/src/dbload/gbAlignTbl.h
16	./hg/makeDb/genbank/src/dbload/dbLoadPartitions.h
32	./hg/makeDb/genbank/src/extFileUpdate/raInfoTbl.h
64	./hg/makeDb/genbank/src/orfeome/orfeomeImageIds.h
66	./hg/makeDb/genbank/src/ccds/ccdsLocationsJoin.h
22	./hg/makeDb/genbank/src/ccds/ccdsCommon.h
67	./hg/makeDb/genbank/src/inc/gbUpdate.h
113	./hg/makeDb/genbank/src/inc/gbFileOps.h
44	./hg/makeDb/genbank/src/inc/gbGenome.h
13	./hg/makeDb/genbank/src/inc/gbMem.h
63	./hg/makeDb/genbank/src/inc/gbAligned.h
46	./hg/makeDb/genbank/src/inc/gbConf.h
106	./hg/makeDb/genbank/src/inc/gbRelease.h
59	./hg/makeDb/genbank/src/inc/gbFa.h
50	./hg/makeDb/genbank/src/inc/imageCloneTbl.h
51	./hg/makeDb/genbank/src/inc/sqlDeleter.h
64	./hg/makeDb/genbank/src/inc/sqlUpdater.h
81	./hg/makeDb/genbank/src/inc/gbEntry.h
67	./hg/makeDb/genbank/src/inc/gbProcessed.h
185	./hg/makeDb/genbank/src/inc/gbDefs.h
165	./hg/makeDb/genbank/src/inc/gbStatusTbl.h
47	./hg/makeDb/genbank/src/inc/gbIgnore.h
83	./hg/makeDb/genbank/src/inc/gbIndex.h
39	./hg/makeDb/genbank/src/inc/gbPipeline.h
96	./hg/makeDb/genbank/src/inc/gbLoadedTbl.h
45	./hg/makeDb/genbank/src/inc/uniqueStrTbl.h
64	./hg/makeDb/genbank/src/inc/gbVerb.h
65	./hg/makeDb/genbank/src/inc/extFileTbl.h
153	./hg/makeDb/genbank/src/inc/mgcStatusTbl.h
82	./hg/makeDb/genbank/src/inc/seqTbl.h
67	./hg/makeDb/genbank/src/inc/gbSql.h
74	./hg/makeDb/genbank/src/align/gbAlignCommon.h
24	./hg/makeDb/genbank/src/gbGetSeqs/pslData.h
26	./hg/makeDb/genbank/src/gbGetSeqs/pepData.h
24	./hg/makeDb/genbank/src/gbGetSeqs/seqData.h
12	./hg/makeDb/genbank/src/gbGetSeqs/gbGetSeqs.h
24	./hg/makeDb/genbank/src/gbGetSeqs/raData.h
25	./hg/makeDb/genbank/src/gbGetSeqs/oiData.h
102	./hg/makeDb/genbank/src/gbSanity/metaData.h
17	./hg/makeDb/genbank/src/gbSanity/chkGbIndex.h
25	./hg/makeDb/genbank/src/gbSanity/chkCommon.h
12	./hg/makeDb/genbank/src/gbSanity/chkSeqTbl.h
21	./hg/makeDb/genbank/src/gbSanity/chkAlignTbls.h
31	./hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.h
34	./hg/makeDb/hgGoldGapGl/ntContig.h
89	./hg/autoXml/test/polygon/expected/polygon.h
387	./hg/autoXml/test/dasGff/expected/dasGff.h
335	./hg/hgGenome/hgGenome.h
41	./hg/hgSession/hgSession.h
92	./hg/hgGeneRing/interaction.h
52	./hg/mouseStuff/knownVsBlat/blatStats.h
4	./hg/mouseStuff/chainInfo/chainInfo.h
16	./oneShot/threadExp/cacheQueue.h
26	./oneShot/bison/mfcalc/calc.h
4	./oneShot/bison/mfcalc/yy.h
4	./oneShot/testGitRename/upperFile.h
41	./oneShot/clusterBox/boxClump.h
30	./oneShot/mafTest/mafXml.h
62	./ai/paraFlow/aceTools/dict.h
58	./ai/paraFlow/compiler/asmCoder.h
285	./ai/paraFlow/compiler/isx.h
11	./ai/paraFlow/compiler/tokInto.h
34	./ai/paraFlow/compiler/isxLiveVar.h
23	./ai/paraFlow/compiler/recodedType.h
14	./ai/paraFlow/compiler/pfBindVars.h
11	./ai/paraFlow/compiler/pentStruct.h
160	./ai/paraFlow/compiler/pfCompile.h
11	./ai/paraFlow/compiler/defFile.h
163	./ai/paraFlow/compiler/pfPreamble.h
35	./ai/paraFlow/compiler/codedType.h
31	./ai/paraFlow/compiler/cMain.h
81	./ai/paraFlow/compiler/pfScope.h
82	./ai/paraFlow/compiler/backEnd.h
181	./ai/paraFlow/compiler/pfToken.h
278	./ai/paraFlow/compiler/pfParse.h
10	./ai/paraFlow/compiler/constFold.h
21	./ai/paraFlow/compiler/pfStruct.h
155	./ai/paraFlow/compiler/pentCode.h
13	./ai/paraFlow/compiler/checkPara.h
44	./ai/paraFlow/compiler/gnuMac.h
11	./ai/paraFlow/compiler/checkPoly.h
10	./ai/paraFlow/compiler/parseInto.h
69	./ai/paraFlow/compiler/cCoder.h
22	./ai/paraFlow/compiler/refCount.h
14	./ai/paraFlow/compiler/optBranch.h
58	./ai/paraFlow/compiler/ctar.h
118	./ai/paraFlow/compiler/pfType.h
7	./ai/paraFlow/compiler/isxToPentium.h
17	./ai/paraFlow/compiler/pentConst.h
11	./ai/paraFlow/compiler/pentCast.h
42	./ai/paraFlow/runtime/paraRun.h
62	./ai/paraFlow/runtime/initVar.h
67	./ai/paraFlow/runtime/runErr.h
56	./ai/paraFlow/runtime/object.h
16	./ai/paraFlow/runtime/cacheQueue.h
9	./ai/paraFlow/runtime/msort.h
19	./ai/paraFlow/runtime/numbers.h
43	./ai/paraFlow/runtime/array.h
39	./ai/paraFlow/runtime/rtRefCount.h
78	./ai/paraFlow/runtime/pfString.h
158	./ai/paraFlow/runtime/runType.h
59	./ai/paraFlow/runtime/dir.h
17	./ai/paraFlow/runtime/print.h
218	./inc/vcf.h
98	./inc/oligoTm.h
361	./inc/bbiFile.h
44	./inc/metaWig.h
39	./inc/correlate.h
32	./inc/flydna.h
18	./inc/slog.h
32	./inc/aliType.h
31	./inc/gfxPoly.h
112	./inc/bigWig.h
42	./inc/chainBlock.h
82	./inc/hacTree.h
16	./inc/ooc.h
45	./inc/shaRes.h
11	./inc/seqStats.h
80	./inc/splix.h
104	./inc/cda.h
168	./inc/ens.h
73	./inc/dnaseq.h
43	./inc/internet.h
258	./inc/maf.h
103	./inc/oldGff.h
75	./inc/bigBed.h
100	./inc/gfPcrLib.h
129	./inc/hgGene.h
30	./inc/hmmstats.h
154	./inc/pipeline.h
43	./inc/dnaMarkov.h
30	./inc/base64.h
10	./inc/gifLabel.h
34	./inc/synQueue.h
55	./inc/nibTwo.h
31	./inc/unfin.h
93	./inc/errabort.h
41	./inc/boxClump.h
82	./inc/fof.h
132	./inc/bamUdc.h
113	./inc/bwgInternal.h
126	./inc/dnaMotif.h
7	./inc/scoreWindow.h
17	./inc/xmlEscape.h
265	./inc/gff3.h
60	./inc/chainConnect.h
55	./inc/hmmPfamParse.h
233	./inc/hgap.h
65	./inc/kxTok.h
50	./inc/intValTree.h
26	./inc/histogram.h
42	./inc/pslTbl.h
21	./inc/md5.h
31	./inc/filePath.h
118	./inc/psGfx.h
193	./inc/vGfx.h
45	./inc/nt4.h
10	./inc/knetUdc.h
48	./inc/patSpace.h
90	./inc/crTree.h
74	./inc/log.h
59	./inc/trans3.h
45	./inc/pthreadWrap.h
29	./inc/regexHelper.h
45	./inc/tabRow.h
21	./inc/quotedP.h
45	./inc/trix.h
53	./inc/quickHeap.h
77	./inc/phyloTree.h
202	./inc/diGraph.h
488	./inc/cheapcgi.h
47	./inc/localmem.h
16	./inc/rle.h
79	./inc/ace.h
62	./inc/maDbRep.h
245	./inc/wormdna.h
174	./inc/obscure.h
143	./inc/udc.h
273	./inc/basicBed.h
78	./inc/xp.h
28	./inc/chainToPsl.h
248	./inc/net.h
55	./inc/rnautil.h
42	./inc/bandExt.h
41	./inc/subText.h
46	./inc/textOut.h
57	./inc/dtdParse.h
19	./inc/spacedSeed.h
30	./inc/jointalign.h
111	./inc/genomeRangeTree.h
65	./inc/qa.h
98	./inc/peakCluster.h
94	./inc/pairHmm.h
46	./inc/hgdb.h
1420	./inc/common.h
26	./inc/zlibFace.h
260	./inc/dnautil.h
66	./inc/keys.h
73	./inc/xAli.h
60	./inc/sufa.h
31	./inc/psPoly.h
159	./inc/htmshell.h
138	./inc/dlist.h
101	./inc/sig.h
53	./inc/verbose.h
9	./inc/https.h
141	./inc/gff.h
109	./inc/seg.h
91	./inc/seqOut.h
64	./inc/sufx.h
75	./inc/emblParse.h
80	./inc/splatAli.h
35	./inc/snofmake.h
163	./inc/chain.h
41	./inc/xenalign.h
384	./inc/memgfx.h
25	./inc/boxLump.h
11	./inc/jpegSize.h
142	./inc/sqlList.h
175	./inc/rudp.h
60	./inc/snof.h
116	./inc/blastParse.h
71	./inc/pscmGfx.h
113	./inc/nib.h
385	./inc/genoFind.h
28	./inc/gfWebLib.h
90	./inc/itsa.h
82	./inc/cirTree.h
61	./inc/gdf.h
91	./inc/options.h
62	./inc/mime.h
326	./inc/psl.h
257	./inc/linefile.h
40	./inc/dnaLoad.h
130	./inc/rql.h
46	./inc/spacedColumn.h
120	./inc/binRange.h
33	./inc/codebias.h
56	./inc/errCatch.h
73	./inc/supStitch.h
18	./inc/rainbow.h
76	./inc/bits.h
98	./inc/rangeTree.h
21	./inc/maToFf.h
63	./inc/xa.h
96	./inc/asParse.h
55	./inc/memalloc.h
272	./inc/axt.h
56	./inc/repMask.h
17	./inc/pslTransMap.h
114	./inc/bPlusTree.h
78	./inc/xap.h
129	./inc/fa.h
75	./inc/ra.h
40	./inc/sqlNum.h
279	./inc/hash.h
26	./inc/crudeali.h
43	./inc/apacheLog.h
194	./inc/twoBit.h
66	./inc/tokenizer.h
239	./inc/htmlPage.h
260	./inc/fuzzyFind.h
152	./inc/portable.h
65	./inc/spaceSaver.h
96	./inc/dystring.h
102	./inc/rbTree.h
26	./inc/gfClientLib.h
15	./inc/chainToAxt.h
44	./inc/gapCalc.h
35	./blatz/dynamic.h
94	./blatz/bzp.h
75	./blatz/blatz.h
158	./parasol/para/jobDb.h
59	./parasol/para/jobResult.h
25	./parasol/inc/paraCommon.h
1	./parasol/inc/paraVersion.h
91	./parasol/inc/paraMessage.h
75	./parasol/inc/paraLib.h
131	./parasol/inc/broadData.h
55	./parasol/inc/machSpec.h
167	./parasol/paraHub/paraHub.h
27	./ascUtils/inc/ascUtils.h
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