!_TAG_FILE_FORMAT	2	/extended format; --format=1 will not append ;" to lines/
!_TAG_FILE_SORTED	1	/0=unsorted, 1=sorted, 2=foldcase/
!_TAG_PROGRAM_AUTHOR	Darren Hiebert	/dhiebert@users.sourceforge.net/
!_TAG_PROGRAM_NAME	Exuberant Ctags	//
!_TAG_PROGRAM_URL	http://ctags.sourceforge.net	/official site/
!_TAG_PROGRAM_VERSION	5.6	//
A	hg/inc/simpleRepeat.h	/^    unsigned A;	\/* Number of A's in repeat unit *\/$/;"	m	struct:simpleRepeat
AA	inc/dnautil.h	/^typedef char AA;$/;"	t
AA_ALPHABET	hg/inc/pbCommon.h	12;"	d
ACEMBLYCLASS_H	hg/inc/acemblyClass.h	6;"	d
ACEMBLYCLASS_NUM_COLS	hg/inc/acemblyClass.h	8;"	d
ACE_H	inc/ace.h	9;"	d
ADD_BUTTON_LABEL	hg/lib/hui.c	43;"	d	file:
ADD_ITEM_COMMENT_DEFAULT	hg/inc/wikiTrack.h	131;"	d
ADD_PM_BUTTON	hg/lib/search.c	188;"	d	file:
ADE_hi	lib/gemfont.h	/^WORD	ADE_hi;		\/* Highest ascii character in font *\/$/;"	m	struct:font_hdr
ADE_lo	lib/gemfont.h	/^WORD	ADE_lo;		\/* Lowest ascii character in font *\/$/;"	m	struct:font_hdr
AFFY10KDETAILS_H	hg/inc/affy10KDetails.h	6;"	d
AFFY10KDETAILS_NUM_COLS	hg/inc/affy10KDetails.h	12;"	d
AFFY10K_H	hg/inc/affy10K.h	6;"	d
AFFY10K_NUM_COLS	hg/inc/affy10K.h	12;"	d
AFFY120KDETAILS_H	hg/inc/affy120KDetails.h	6;"	d
AFFY120KDETAILS_NUM_COLS	hg/inc/affy120KDetails.h	12;"	d
AFFYALLEXONPROBE_H	hg/inc/affyAllExonProbe.h	6;"	d
AFFYALLEXONPROBE_NUM_COLS	hg/inc/affyAllExonProbe.h	12;"	d
AFFYATLAS_H	hg/inc/affyAtlas.h	6;"	d
AFFYGENODETAILS_H	hg/inc/affyGenoDetails.h	6;"	d
AFFYGENODETAILS_NUM_COLS	hg/inc/affyGenoDetails.h	8;"	d
AFFYOFFSET_H	hg/inc/affyOffset.h	6;"	d
AFFYPAIRS_H	hg/inc/affyPairs.h	6;"	d
AFFYTRANSCRIPTOME_H	hg/inc/affyTranscriptome.h	6;"	d
AFFYTRANSCRIPTOME_NUM_COLS	hg/inc/affyTranscriptome.h	12;"	d
AFFYTRANSLIFTED_H	hg/inc/affyTransLifted.h	6;"	d
AGGREGATE	hg/inc/wiggle.h	273;"	d
AGI_NUM_COLS	hg/inc/ispyTables.h	766;"	d
AGPFRAG_H	hg/inc/agpFrag.h	6;"	d
AGPGAP_H	hg/inc/agpGap.h	6;"	d
ALIGNINFO_H	hg/inc/alignInfo.h	6;"	d
ALIGNINFO_NUM_COLS	hg/inc/alignInfo.h	8;"	d
ALIGNSEQSIZES_H	hg/inc/alignSeqSizes.h	4;"	d
ALITYPE_H	inc/aliType.h	4;"	d
ALLELEFREQS_H	hg/inc/alleleFreqs.h	6;"	d
ALLELEFREQS_NUM_COLS	hg/inc/alleleFreqs.h	12;"	d
ALLELE_FREQ_HI	hg/inc/dbRIP.h	125;"	d
ALLELE_FREQ_LOW	hg/inc/dbRIP.h	126;"	d
ALLPREDICTIONS_H	hg/inc/allpredictions.h	6;"	d
ALLPREDICTIONS_NUM_COLS	hg/inc/allpredictions.h	8;"	d
ALTGRAPHX_H	hg/inc/altGraphX.h	6;"	d
ALTGRAPHX_NUM_COLS	hg/inc/altGraphX.h	72;"	d
ALTGRAPH_H	hg/inc/altGraph.h	6;"	d
ALWAYSZERO	hg/inc/wiggle.h	269;"	d
ANCIENTRREF_H	hg/inc/ancientRref.h	6;"	d
ANNOCOLUMN_H	inc/annoColumn.h	3;"	d
ANNOFILTER_H	inc/annoFilter.h	4;"	d
ANNOFORMATTAB_H	inc/annoFormatTab.h	4;"	d
ANNOFORMATTER_H	inc/annoFormatter.h	4;"	d
ANNOGRATEWIG_H	hg/inc/annoGrateWig.h	4;"	d
ANNOGRATORGPVAR_H	hg/inc/annoGratorGpVar.h	2;"	d
ANNOGRATORQUERY_H	inc/annoGratorQuery.h	4;"	d
ANNOGRATOR_H	inc/annoGrator.h	10;"	d
ANNOROW_H	inc/annoRow.h	4;"	d
ANNOSTREAMDB_H	hg/inc/annoStreamDb.h	4;"	d
ANNOSTREAMER_H	inc/annoStreamer.h	4;"	d
ANNOSTREAMVCF_H	inc/annoStreamVcf.h	4;"	d
ANNOSTREAMWIG_H	hg/inc/annoStreamWig.h	4;"	d
ANYLABEL	hg/inc/search.h	17;"	d
APACHELOG_H	inc/apacheLog.h	5;"	d
ARCOGDESC_H	hg/inc/arcogdesc.h	6;"	d
ARCOGDESC_NUM_COLS	hg/inc/arcogdesc.h	8;"	d
ARCOGS_H	hg/inc/arCOGs.h	6;"	d
ARCOGS_NUM_COLS	hg/inc/arCOGs.h	8;"	d
ASPARSE_H	inc/asParse.h	4;"	d
ASSERT	hg/lib/cart.c	2032;"	d	file:
ASSERT	hg/lib/cart.c	2035;"	d	file:
ATOMDB_H	hg/inc/atomDb.h	6;"	d
ATOM_NUM_COLS	hg/inc/atomDb.h	8;"	d
AUTOSCALE	hg/inc/wiggle.h	270;"	d
AUTOSCALEDEFAULT	hg/inc/wiggle.h	271;"	d
AXTINFO_H	hg/inc/axtInfo.h	6;"	d
AXTLIB_H	hg/inc/axtLib.h	2;"	d
AXT_H	inc/axt.h	21;"	d
A_BASE_VAL	inc/dnautil.h	26;"	d
A_CHAR	lib/oligoTm.c	157;"	d	file:
AbortHandler	inc/errabort.h	/^typedef void (*AbortHandler)();$/;"	t
Age	hg/inc/ispyTables.h	/^    float *Age;	\/* Patient Age *\/$/;"	m	struct:patientInfo
AgeCat	hg/inc/ispyTables.h	/^    char *AgeCat;	\/* Patient Age Category *\/$/;"	m	struct:patientInfo
Agi_T1	hg/inc/ispyTables.h	/^    char *Agi_T1;	\/* AGI at T1 *\/$/;"	m	struct:agi
Agi_T2	hg/inc/ispyTables.h	/^    char *Agi_T2;	\/* AGI at T2 *\/$/;"	m	struct:agi
Agi_T3	hg/inc/ispyTables.h	/^    char *Agi_T3;	\/* AGI at T3 *\/$/;"	m	struct:agi
Agi_T4	hg/inc/ispyTables.h	/^    char *Agi_T4;	\/* AGI at T4 *\/$/;"	m	struct:agi
AllocA	inc/common.h	242;"	d
AllocArray	inc/common.h	240;"	d
AllocN	inc/common.h	245;"	d
AllocVar	inc/common.h	236;"	d
ArraySize	inc/common.h	172;"	d
Asn3pSc	hg/inc/llaInfo.h	/^    float Asn3pSc;	\/* Antisense primer 3-prime self-complementarity score *\/$/;"	m	struct:llaInfo
AsnGc	hg/inc/llaInfo.h	/^    float AsnGc;	\/* Antisense primer annealing temp *\/$/;"	m	struct:llaInfo
AsnSc	hg/inc/llaInfo.h	/^    float AsnSc;	\/* Antisense primer self-complementarity score *\/$/;"	m	struct:llaInfo
AsnSeq	hg/inc/llaInfo.h	/^    char *AsnSeq;	\/* Antisense primer sequence *\/$/;"	m	struct:llaInfo
AsnTm	hg/inc/llaInfo.h	/^    float AsnTm;	\/* Antisense primer annealing temp *\/$/;"	m	struct:llaInfo
B64CHARS	inc/base64.h	7;"	d
BACCLONEALIAS_H	hg/inc/bacCloneAlias.h	6;"	d
BACCLONEALIAS_NUM_COLS	hg/inc/bacCloneAlias.h	8;"	d
BACCLONEXREF_H	hg/inc/bacCloneXRef.h	6;"	d
BACCLONEXREF_NUM_COLS	hg/inc/bacCloneXRef.h	8;"	d
BACENDALIAS_H	hg/inc/bacEndAlias.h	6;"	d
BACENDALIAS_NUM_COLS	hg/inc/bacEndAlias.h	8;"	d
BACTIGPOS_H	hg/inc/bactigPos.h	6;"	d
BAD_CODE_SIZE	lib/gifcodes.h	40;"	d
BAMFILE_H	inc/bamFile.h	4;"	d
BAM_COLOR_MODE	hg/inc/hui.h	592;"	d
BAM_COLOR_MODE_DEFAULT	hg/inc/hui.h	597;"	d
BAM_COLOR_MODE_GRAY	hg/inc/hui.h	593;"	d
BAM_COLOR_MODE_OFF	hg/inc/hui.h	596;"	d
BAM_COLOR_MODE_STRAND	hg/inc/hui.h	594;"	d
BAM_COLOR_MODE_TAG	hg/inc/hui.h	595;"	d
BAM_COLOR_TAG	hg/inc/hui.h	605;"	d
BAM_COLOR_TAG_DEFAULT	hg/inc/hui.h	606;"	d
BAM_DOT_C_OPCODE_STRING	inc/bamFile.h	74;"	d
BAM_GRAY_MODE	hg/inc/hui.h	599;"	d
BAM_GRAY_MODE_ALI_QUAL	hg/inc/hui.h	600;"	d
BAM_GRAY_MODE_BASE_QUAL	hg/inc/hui.h	601;"	d
BAM_GRAY_MODE_DEFAULT	hg/inc/hui.h	603;"	d
BAM_GRAY_MODE_UNPAIRED	hg/inc/hui.h	602;"	d
BAM_MIN_ALI_QUAL	hg/inc/hui.h	589;"	d
BAM_MIN_ALI_QUAL_DEFAULT	hg/inc/hui.h	590;"	d
BAM_PAIR_ENDS_BY_NAME	hg/inc/hui.h	587;"	d
BAM_SHOW_NAMES	hg/inc/hui.h	588;"	d
BANDEXT_H	inc/bandExt.h	9;"	d
BASE64_H	inc/base64.h	5;"	d
BASEMASKCOMMON_H	hg/inc/baseMaskCommon.h	3;"	d
BASE_0	hg/inc/wiggle.h	80;"	d
BASE_1	hg/inc/wiggle.h	81;"	d
BASE_COLORS_OFFSET_VAR	hg/inc/hgMaf.h	24;"	d
BASE_COLORS_VAR	hg/inc/hgMaf.h	23;"	d
BASE_COLOR_DEFAULT	hg/inc/hui.h	650;"	d
BASE_COLOR_DRAW_DIFF_BASES	hg/inc/hui.h	641;"	d
BASE_COLOR_DRAW_DIFF_BASES_CDS_LABEL	hg/inc/hui.h	631;"	d
BASE_COLOR_DRAW_DIFF_BASES_NC_LABEL	hg/inc/hui.h	633;"	d
BASE_COLOR_DRAW_DIFF_CODONS	hg/inc/hui.h	639;"	d
BASE_COLOR_DRAW_DIFF_CODONS_LABEL	hg/inc/hui.h	629;"	d
BASE_COLOR_DRAW_GENOMIC_CODONS	hg/inc/hui.h	637;"	d
BASE_COLOR_DRAW_GENOMIC_CODONS_LABEL	hg/inc/hui.h	627;"	d
BASE_COLOR_DRAW_ITEM_BASES	hg/inc/hui.h	640;"	d
BASE_COLOR_DRAW_ITEM_BASES_CDS_LABEL	hg/inc/hui.h	630;"	d
BASE_COLOR_DRAW_ITEM_BASES_NC_LABEL	hg/inc/hui.h	632;"	d
BASE_COLOR_DRAW_ITEM_CODONS	hg/inc/hui.h	638;"	d
BASE_COLOR_DRAW_ITEM_CODONS_LABEL	hg/inc/hui.h	628;"	d
BASE_COLOR_DRAW_OFF	hg/inc/hui.h	636;"	d
BASE_COLOR_DRAW_OFF_LABEL	hg/inc/hui.h	626;"	d
BASE_COLOR_USE_CDS	hg/inc/hui.h	648;"	d
BASE_COLOR_USE_SEQUENCE	hg/inc/hui.h	649;"	d
BASE_COLOR_VAR_SUFFIX	hg/inc/hui.h	644;"	d
BASE_MOTIFS	hg/inc/hui.h	99;"	d
BASE_SCALE_BAR	hg/inc/hui.h	101;"	d
BASE_SHOWASM	hg/inc/hui.h	104;"	d
BASE_SHOWASM_SCALEBAR	hg/inc/hui.h	105;"	d
BASE_SHOWPOS	hg/inc/hui.h	103;"	d
BASE_SHOWRULER	hg/inc/hui.h	102;"	d
BASE_TITLE	hg/inc/hui.h	106;"	d
BASICBED_H	inc/basicBed.h	11;"	d
BBIFILE_H	inc/bbiFile.h	4;"	d
BB_MAX_CHROM_STRING	inc/basicBed.h	43;"	d
BDGPEXPRLINK_H	hg/inc/bdgpExprLink.h	6;"	d
BDGPEXPRLINK_NUM_COLS	hg/inc/bdgpExprLink.h	8;"	d
BDGPGENEINFO_H	hg/inc/bdgpGeneInfo.h	6;"	d
BDGPGENEINFO_NUM_COLS	hg/inc/bdgpGeneInfo.h	8;"	d
BDGPSWISSPROT_H	hg/inc/bdgpSwissProt.h	6;"	d
BDGPSWISSPROT_NUM_COLS	hg/inc/bdgpSwissProt.h	8;"	d
BED12SOURCE_H	hg/inc/bed12Source.h	6;"	d
BED12SOURCE_NUM_COLS	hg/inc/bed12Source.h	8;"	d
BED12WSEQ_H	hg/inc/bed12wSeq.h	6;"	d
BED12WSEQ_NUM_COLS	hg/inc/bed12wSeq.h	9;"	d
BED5FLOATSCORE_H	hg/inc/bed5FloatScore.h	6;"	d
BED5FLOATSCORE_NUM_COLS	hg/inc/bed5FloatScore.h	8;"	d
BED5PVAL_H	hg/inc/bed5Pval.h	6;"	d
BED5PVAL_NUM_COLS	hg/inc/bed5Pval.h	8;"	d
BED6FLOATSCORE_H	hg/inc/bed6FloatScore.h	6;"	d
BED6FLOATSCORE_NUM_COLS	hg/inc/bed6FloatScore.h	8;"	d
BED8ATTRS_H	hg/inc/bed8Attrs.h	6;"	d
BED8ATTRS_NUM_COLS	hg/inc/bed8Attrs.h	8;"	d
BEDCART_H	hg/inc/bedCart.h	4;"	d
BEDDETAIL_H	hg/inc/bedDetail.h	6;"	d
BEDDETAIL_NUM_COLS	hg/inc/bedDetail.h	10;"	d
BEDGRAPH_H	hg/inc/bedGraph.h	6;"	d
BEDGRAPH_NUM_COLS	hg/inc/bedGraph.h	8;"	d
BEDSTART_TO_POSITION	hg/lib/liftOver.c	1114;"	d	file:
BED_H	hg/inc/bed.h	12;"	d
BGIGENEINFO_H	hg/inc/bgiGeneInfo.h	6;"	d
BGIGENEINFO_NUM_COLS	hg/inc/bgiGeneInfo.h	8;"	d
BGIGENESNP_H	hg/inc/bgiGeneSnp.h	6;"	d
BGIGENESNP_NUM_COLS	hg/inc/bgiGeneSnp.h	8;"	d
BGISNP_H	hg/inc/bgiSnp.h	6;"	d
BGISNP_NUM_COLS	hg/inc/bgiSnp.h	8;"	d
BIGBED_H	inc/bigBed.h	7;"	d
BIGDOUBLE	inc/common.h	118;"	d
BIGNUM	inc/common.h	117;"	d
BIGONE	jkOwnLib/patSpace.c	13;"	d	file:
BIGWIGFILE_H	inc/bwgInternal.h	7;"	d
BIGWIG_H	inc/bigWig.h	20;"	d
BINRANGE_H	inc/binRange.h	2;"	d
BINRANGE_MAXEND_512M	inc/binRange.h	16;"	d
BIN_TO_VALUE	hg/inc/wiggle.h	289;"	d
BIOIMAGE_H	hg/inc/bioImage.h	4;"	d
BIOPOL	inc/dnautil.h	/^typedef char BIOPOL;	\/* Biological polymer. *\/$/;"	t
BITS_ADD	inc/common.h	1393;"	d
BITS_ARE_OFF	inc/common.h	1396;"	d
BITS_ARE_ON	inc/common.h	1395;"	d
BITS_H	inc/bits.h	7;"	d
BITS_REMOVE	inc/common.h	1394;"	d
BLACKLIST_H	hg/inc/genbankBlackList.h	3;"	d
BLASTPARSE_H	inc/blastParse.h	4;"	d
BLASTTAB_H	hg/inc/blastTab.h	6;"	d
BLASTTAB_NUM_COLS	hg/inc/blastTab.h	8;"	d
BLASTZNET_H	hg/inc/blastzNet.h	6;"	d
BLATSERVERS_H	hg/inc/blatServers.h	6;"	d
BOGUS_CHROM_SIZE	hg/lib/gpFx.c	349;"	d	file:
BOOLSHAD_EXTRA	lib/cheapcgi.c	1225;"	d	file:
BORF_H	hg/inc/borf.h	6;"	d
BORF_NUM_COLS	hg/inc/borf.h	16;"	d
BORKPSEUDOHOM_H	hg/inc/borkPseudoHom.h	6;"	d
BOXCLUMP_H	inc/boxClump.h	5;"	d
BOXLUMP_H	inc/boxLump.h	10;"	d
BPLUSTREE_H	inc/bPlusTree.h	49;"	d
BRANEY_SAYS_USETARG_IS_OBSOLETE	hg/lib/hui.c	5758;"	d	file:
BRGFX_H	hg/inc/hvGfx.h	4;"	d
BUFSIZE	lib/net.c	1942;"	d	file:
BUTTON_ALL	hg/lib/hui.c	6999;"	d	file:
BUTTON_DEF	hg/lib/hui.c	49;"	d	file:
BUTTON_FILTER_COMP	hg/lib/hui.c	6746;"	d	file:
BUTTON_MAT	hg/lib/hui.c	6381;"	d	file:
BUTTON_MINUS_ALL_GLOBAL	hg/lib/hui.c	7001;"	d	file:
BUTTON_PLUS_ALL_GLOBAL	hg/lib/hui.c	7000;"	d	file:
BUTTON_PM	hg/lib/hui.c	48;"	d	file:
BUTTON_PM	hg/lib/search.c	187;"	d	file:
BYTE	inc/common.h	107;"	d
BbiFetchIntervals	inc/bbiFile.h	/^typedef struct bbiInterval *(*BbiFetchIntervals)(struct bbiFile *bbi, char *chrom, $/;"	t	typeref:struct:BbiFetchIntervals
Bits	inc/bits.h	/^typedef unsigned char Bits;$/;"	t
C	hg/inc/simpleRepeat.h	/^    unsigned C;	\/* Number of C's in repeat unit *\/$/;"	m	struct:simpleRepeat
CACHE_IS_FASTER_THAN_RSYNC	hg/lib/fileUi.c	64;"	d	file:
CARTDB_H	hg/inc/cartDb.h	6;"	d
CART_DUMP_AS_TABLE	hg/inc/cart.h	308;"	d
CART_H	hg/inc/cart.h	6;"	d
CART_VAR_EMPTY	hg/inc/cart.h	18;"	d
CATID2	lib/oligoTm.c	164;"	d	file:
CATID5	lib/oligoTm.c	163;"	d	file:
CCDSGENEMAP_H	hg/inc/ccdsGeneMap.h	6;"	d
CCDSGENEMAP_NUM_COLS	hg/inc/ccdsGeneMap.h	8;"	d
CCDSINFO_H	hg/inc/ccdsInfo.h	6;"	d
CCDSINFO_NUM_COLS	hg/inc/ccdsInfo.h	8;"	d
CCDSNOTES_H	hg/inc/ccdsNotes.h	6;"	d
CCDSNOTES_NUM_COLS	hg/inc/ccdsNotes.h	8;"	d
CDA_H	inc/cda.h	10;"	d
CDDDESC_H	hg/inc/cddDesc.h	6;"	d
CDDDESC_NUM_COLS	hg/inc/cddDesc.h	8;"	d
CDDINFO_H	hg/inc/cddInfo.h	6;"	d
CDDINFO_NUM_COLS	hg/inc/cddInfo.h	8;"	d
CDNA_NUM_COLS	hg/inc/ispyTables.h	687;"	d
CDSEVIDENCE_H	hg/inc/cdsEvidence.h	6;"	d
CDSEVIDENCE_NUM_COLS	hg/inc/cdsEvidence.h	12;"	d
CDSORTHO_H	hg/inc/cdsOrtho.h	6;"	d
CDSORTHO_NUM_COLS	hg/inc/cdsOrtho.h	8;"	d
CDSPICK_H	hg/inc/cdsPick.h	6;"	d
CDSPICK_NUM_COLS	hg/inc/cdsPick.h	8;"	d
CDSSPEC_H	hg/inc/cdsSpec.h	6;"	d
CDSSPEC_NUM_COLS	hg/inc/cdsSpec.h	8;"	d
CDS_BASE_HELP_PAGE	hg/inc/hui.h	656;"	d
CDS_HELP_PAGE	hg/inc/hui.h	654;"	d
CDS_MRNA_HELP_PAGE	hg/inc/hui.h	655;"	d
CELERACOVERAGE_H	hg/inc/celeraCoverage.h	6;"	d
CELERADUPPOSITIVE_H	hg/inc/celeraDupPositive.h	7;"	d
CFG_LINK	hg/lib/hui.c	6225;"	d	file:
CFG_LOGIN_SYSTEM_NAME	hg/inc/wikiLink.h	13;"	d
CFG_SUBTRACK_DIV	hg/lib/hui.c	4236;"	d	file:
CFG_SUBTRACK_LINK	hg/lib/hui.c	4198;"	d	file:
CFG_WIKI_BROWSER	hg/inc/wikiTrack.h	112;"	d
CFG_WIKI_DB_LIST	hg/inc/wikiTrack.h	114;"	d
CFG_WIKI_EDITORS	hg/inc/wikiTrack.h	113;"	d
CFG_WIKI_HOST	hg/inc/wikiLink.h	7;"	d
CFG_WIKI_LOGGED_IN_COOKIE	hg/inc/wikiLink.h	9;"	d
CFG_WIKI_SESSION_COOKIE	hg/inc/wikiLink.h	10;"	d
CFG_WIKI_URL	hg/inc/wikiTrack.h	111;"	d
CFG_WIKI_USER_NAME_COOKIE	hg/inc/wikiLink.h	8;"	d
CGH_H	hg/inc/cgh.h	6;"	d
CGI_VERSION	hg/inc/versionInfo.h	1;"	d
CHAINBLOCK_H	inc/chainBlock.h	7;"	d
CHAINCART_H	hg/inc/chainCart.h	4;"	d
CHAINCONNECT_H	inc/chainConnect.h	6;"	d
CHAINDB_H	hg/inc/chainDb.h	11;"	d
CHAINGAP_H	hg/inc/chainGap.h	6;"	d
CHAINLINK_H	hg/inc/chainLink.h	6;"	d
CHAINNETDBLOAD_H	hg/inc/chainNetDbLoad.h	6;"	d
CHAINNET_H	hg/inc/chainNet.h	5;"	d
CHAINTOAXT_H	inc/chainToAxt.h	4;"	d
CHAINTOPSL_H	inc/chainToPsl.h	6;"	d
CHAINVIEW_H	hg/inc/chainView.h	2;"	d
CHAIN_H	inc/chain.h	6;"	d
CHAIN_SCORE_MAXIMUM	hg/inc/chainCart.h	11;"	d
CHEAPCGI_H	inc/cheapcgi.h	10;"	d
CHEMO_NUM_COLS	hg/inc/ispyTables.h	171;"	d
CHICKEN13KINFO_H	hg/inc/chicken13kInfo.h	6;"	d
CHICKEN13KINFO_NUM_COLS	hg/inc/chicken13kInfo.h	12;"	d
CHILD_MASK	hg/inc/trackDb.h	84;"	d
CHILD_NODE	hg/inc/trackDb.h	87;"	d
CHR18DELETIONS_H	hg/inc/chr18deletions.h	6;"	d
CHROMBINS_H	hg/inc/chromBins.h	3;"	d
CHROMGRAPHFACTORY_H	hg/inc/chromGraphFactory.h	5;"	d
CHROMGRAPH_H	hg/inc/chromGraph.h	6;"	d
CHROMGRAPH_NUM_COLS	hg/inc/chromGraph.h	16;"	d
CHROMINFO_H	hg/inc/chromInfo.h	6;"	d
CHROMINFO_NUM_COLS	hg/inc/chromInfo.h	8;"	d
CHROMINSERTS_H	hg/inc/chromInserts.h	5;"	d
CHROMKEEPER_H	hg/inc/chromKeeper.h	3;"	d
CHROM_10_B	hg/inc/chromColors.h	45;"	d
CHROM_10_G	hg/inc/chromColors.h	44;"	d
CHROM_10_R	hg/inc/chromColors.h	43;"	d
CHROM_11_B	hg/inc/chromColors.h	49;"	d
CHROM_11_G	hg/inc/chromColors.h	48;"	d
CHROM_11_R	hg/inc/chromColors.h	47;"	d
CHROM_12_B	hg/inc/chromColors.h	53;"	d
CHROM_12_G	hg/inc/chromColors.h	52;"	d
CHROM_12_R	hg/inc/chromColors.h	51;"	d
CHROM_13_B	hg/inc/chromColors.h	57;"	d
CHROM_13_G	hg/inc/chromColors.h	56;"	d
CHROM_13_R	hg/inc/chromColors.h	55;"	d
CHROM_14_B	hg/inc/chromColors.h	61;"	d
CHROM_14_G	hg/inc/chromColors.h	60;"	d
CHROM_14_R	hg/inc/chromColors.h	59;"	d
CHROM_15_B	hg/inc/chromColors.h	65;"	d
CHROM_15_G	hg/inc/chromColors.h	64;"	d
CHROM_15_R	hg/inc/chromColors.h	63;"	d
CHROM_16_B	hg/inc/chromColors.h	69;"	d
CHROM_16_G	hg/inc/chromColors.h	68;"	d
CHROM_16_R	hg/inc/chromColors.h	67;"	d
CHROM_17_B	hg/inc/chromColors.h	73;"	d
CHROM_17_G	hg/inc/chromColors.h	72;"	d
CHROM_17_R	hg/inc/chromColors.h	71;"	d
CHROM_18_B	hg/inc/chromColors.h	77;"	d
CHROM_18_G	hg/inc/chromColors.h	76;"	d
CHROM_18_R	hg/inc/chromColors.h	75;"	d
CHROM_19_B	hg/inc/chromColors.h	81;"	d
CHROM_19_G	hg/inc/chromColors.h	80;"	d
CHROM_19_R	hg/inc/chromColors.h	79;"	d
CHROM_1_B	hg/inc/chromColors.h	9;"	d
CHROM_1_G	hg/inc/chromColors.h	8;"	d
CHROM_1_R	hg/inc/chromColors.h	7;"	d
CHROM_20_B	hg/inc/chromColors.h	85;"	d
CHROM_20_G	hg/inc/chromColors.h	84;"	d
CHROM_20_R	hg/inc/chromColors.h	83;"	d
CHROM_21_B	hg/inc/chromColors.h	89;"	d
CHROM_21_G	hg/inc/chromColors.h	88;"	d
CHROM_21_R	hg/inc/chromColors.h	87;"	d
CHROM_22_B	hg/inc/chromColors.h	93;"	d
CHROM_22_G	hg/inc/chromColors.h	92;"	d
CHROM_22_R	hg/inc/chromColors.h	91;"	d
CHROM_2_B	hg/inc/chromColors.h	13;"	d
CHROM_2_G	hg/inc/chromColors.h	12;"	d
CHROM_2_R	hg/inc/chromColors.h	11;"	d
CHROM_3_B	hg/inc/chromColors.h	17;"	d
CHROM_3_G	hg/inc/chromColors.h	16;"	d
CHROM_3_R	hg/inc/chromColors.h	15;"	d
CHROM_4_B	hg/inc/chromColors.h	21;"	d
CHROM_4_G	hg/inc/chromColors.h	20;"	d
CHROM_4_R	hg/inc/chromColors.h	19;"	d
CHROM_5_B	hg/inc/chromColors.h	25;"	d
CHROM_5_G	hg/inc/chromColors.h	24;"	d
CHROM_5_R	hg/inc/chromColors.h	23;"	d
CHROM_6_B	hg/inc/chromColors.h	29;"	d
CHROM_6_G	hg/inc/chromColors.h	28;"	d
CHROM_6_R	hg/inc/chromColors.h	27;"	d
CHROM_7_B	hg/inc/chromColors.h	33;"	d
CHROM_7_G	hg/inc/chromColors.h	32;"	d
CHROM_7_R	hg/inc/chromColors.h	31;"	d
CHROM_8_B	hg/inc/chromColors.h	37;"	d
CHROM_8_G	hg/inc/chromColors.h	36;"	d
CHROM_8_R	hg/inc/chromColors.h	35;"	d
CHROM_9_B	hg/inc/chromColors.h	41;"	d
CHROM_9_G	hg/inc/chromColors.h	40;"	d
CHROM_9_R	hg/inc/chromColors.h	39;"	d
CHROM_COLORS	hg/inc/chainCart.h	15;"	d
CHROM_COLORS_H	hg/inc/chromColors.h	5;"	d
CHROM_M_B	hg/inc/chromColors.h	105;"	d
CHROM_M_G	hg/inc/chromColors.h	104;"	d
CHROM_M_R	hg/inc/chromColors.h	103;"	d
CHROM_Un_B	hg/inc/chromColors.h	109;"	d
CHROM_Un_G	hg/inc/chromColors.h	108;"	d
CHROM_Un_R	hg/inc/chromColors.h	107;"	d
CHROM_X_B	hg/inc/chromColors.h	97;"	d
CHROM_X_G	hg/inc/chromColors.h	96;"	d
CHROM_X_R	hg/inc/chromColors.h	95;"	d
CHROM_Y_B	hg/inc/chromColors.h	101;"	d
CHROM_Y_G	hg/inc/chromColors.h	100;"	d
CHROM_Y_R	hg/inc/chromColors.h	99;"	d
CIRTREE_H	inc/cirTree.h	12;"	d
CLEAR_BUTTON_LABEL	hg/lib/hui.c	44;"	d	file:
CLEN	lib/mafScore.c	15;"	d	file:
CLONEPOS_H	hg/inc/clonePos.h	6;"	d
CLONEPOS_NUM_COLS	hg/inc/clonePos.h	8;"	d
CNPHURLES_H	hg/inc/cnpRedon.h	6;"	d
CNPHURLES_NUM_COLS	hg/inc/cnpRedon.h	8;"	d
CNPIAFRATE2_H	hg/inc/cnpIafrate2.h	6;"	d
CNPIAFRATE2_NUM_COLS	hg/inc/cnpIafrate2.h	8;"	d
CNPIAFRATE_H	hg/inc/cnpIafrate.h	6;"	d
CNPIAFRATE_NUM_COLS	hg/inc/cnpIafrate.h	8;"	d
CNPLOCKE_H	hg/inc/cnpLocke.h	6;"	d
CNPLOCKE_NUM_COLS	hg/inc/cnpLocke.h	8;"	d
CNPSEBAT2_H	hg/inc/cnpSebat2.h	6;"	d
CNPSEBAT2_NUM_COLS	hg/inc/cnpSebat2.h	8;"	d
CNPSEBAT_H	hg/inc/cnpSebat.h	6;"	d
CNPSEBAT_NUM_COLS	hg/inc/cnpSebat.h	12;"	d
CNPSHARP2_H	hg/inc/cnpSharp2.h	6;"	d
CNPSHARP2_NUM_COLS	hg/inc/cnpSharp2.h	8;"	d
CNPSHARPCUTOFF_H	hg/inc/cnpSharpCutoff.h	6;"	d
CNPSHARPCUTOFF_NUM_COLS	hg/inc/cnpSharpCutoff.h	12;"	d
CNPSHARPSAMPLE_H	hg/inc/cnpSharpSample.h	6;"	d
CNPSHARPSAMPLE_NUM_COLS	hg/inc/cnpSharpSample.h	12;"	d
CNPSHARP_H	hg/inc/cnpSharp.h	6;"	d
CNPSHARP_NUM_COLS	hg/inc/cnpSharp.h	8;"	d
CODEBIAS_H	inc/codebias.h	8;"	d
CODEBLASTSCORE_H	hg/inc/codeBlastScore.h	6;"	d
CODEBLASTSCORE_NUM_COLS	hg/inc/codeBlastScore.h	8;"	d
CODEBLAST_H	hg/inc/codeBlast.h	6;"	d
CODEBLAST_NUM_COLS	hg/inc/codeBlast.h	8;"	d
CODON_NUMBERING_SUFFIX	hg/inc/hui.h	645;"	d
COG	hg/inc/cogs.h	/^    char *COG;	\/* COG name *\/$/;"	m	struct:COG
COG	hg/inc/cogs.h	/^struct COG$/;"	s
COGCommaIn	hg/lib/cogs.c	/^struct COG *COGCommaIn(char **pS, struct COG *ret)$/;"	f
COGCommaOut	hg/inc/cogs.h	57;"	d
COGFree	hg/lib/cogs.c	/^void COGFree(struct COG **pEl)$/;"	f
COGFreeList	hg/lib/cogs.c	/^void COGFreeList(struct COG **pList)$/;"	f
COGLoad	hg/lib/cogs.c	/^struct COG *COGLoad(char **row)$/;"	f
COGLoadAll	hg/lib/cogs.c	/^struct COG *COGLoadAll(char *fileName) $/;"	f
COGLoadAllByChar	hg/lib/cogs.c	/^struct COG *COGLoadAllByChar(char *fileName, char chopper) $/;"	f
COGLoadAllByTab	hg/inc/cogs.h	35;"	d
COGOutput	hg/lib/cogs.c	/^void COGOutput(struct COG *el, FILE *f, char sep, char lastSep) $/;"	f
COGSXRA_H	hg/inc/cogsxra.h	6;"	d
COGS_H	hg/inc/cogs.h	6;"	d
COGStaticLoad	hg/lib/cogs.c	/^void COGStaticLoad(char **row, struct COG *ret)$/;"	f
COGTabOut	hg/inc/cogs.h	54;"	d
COGXRA_NUM_COLS	hg/inc/cogsxra.h	8;"	d
COGXra	hg/inc/cogsxra.h	/^struct COGXra$/;"	s
COGXraCommaIn	hg/lib/cogsxra.c	/^struct COGXra *COGXraCommaIn(char **pS, struct COGXra *ret)$/;"	f
COGXraCommaOut	hg/inc/cogsxra.h	56;"	d
COGXraFree	hg/lib/cogsxra.c	/^void COGXraFree(struct COGXra **pEl)$/;"	f
COGXraFreeList	hg/lib/cogsxra.c	/^void COGXraFreeList(struct COGXra **pList)$/;"	f
COGXraLoad	hg/lib/cogsxra.c	/^struct COGXra *COGXraLoad(char **row)$/;"	f
COGXraLoadAll	hg/lib/cogsxra.c	/^struct COGXra *COGXraLoadAll(char *fileName) $/;"	f
COGXraLoadAllByChar	hg/lib/cogsxra.c	/^struct COGXra *COGXraLoadAllByChar(char *fileName, char chopper) $/;"	f
COGXraLoadAllByTab	hg/inc/cogsxra.h	34;"	d
COGXraOutput	hg/lib/cogsxra.c	/^void COGXraOutput(struct COGXra *el, FILE *f, char sep, char lastSep) $/;"	f
COGXraStaticLoad	hg/lib/cogsxra.c	/^void COGXraStaticLoad(char **row, struct COGXra *ret)$/;"	f
COGXraTabOut	hg/inc/cogsxra.h	53;"	d
COG_NUM_COLS	hg/inc/cogs.h	8;"	d
COLHASH_H	lib/colHash.h	4;"	d
COLMASK	lib/gifcodes.h	17;"	d
COLOR_BG_ALTDEFAULT	inc/cheapcgi.h	21;"	d
COLOR_BG_ALTDEFAULT_IX	hg/lib/hui.c	3568;"	d	file:
COLOR_BG_DEFAULT	inc/cheapcgi.h	20;"	d
COLOR_BG_DEFAULT_DARKER	inc/cheapcgi.h	22;"	d
COLOR_BG_DEFAULT_DARKEST	inc/cheapcgi.h	23;"	d
COLOR_BG_DEFAULT_IX	hg/lib/hui.c	3567;"	d	file:
COLOR_BG_GHOST	inc/cheapcgi.h	24;"	d
COLOR_BG_HEADER_LTBLUE	inc/cheapcgi.h	26;"	d
COLOR_BG_PALE	inc/cheapcgi.h	25;"	d
COLOR_BLUE_BUTTON	inc/cheapcgi.h	30;"	d
COLOR_DARKBLUE	inc/cheapcgi.h	29;"	d
COLOR_DARKGREEN	inc/cheapcgi.h	27;"	d
COLOR_DARKGREY	inc/cheapcgi.h	31;"	d
COLOR_LTGREEN	inc/cheapcgi.h	28;"	d
COLOR_LTGREY	inc/cheapcgi.h	32;"	d
COLOR_LTYELLOW	inc/cheapcgi.h	34;"	d
COLOR_RED	inc/cheapcgi.h	36;"	d
COLOR_TRACKLIST_LEVEL1	inc/cheapcgi.h	37;"	d
COLOR_TRACKLIST_LEVEL2	inc/cheapcgi.h	38;"	d
COLOR_TRACKLIST_LEVEL3	inc/cheapcgi.h	39;"	d
COLOR_TRACKLIST_LEVEL4	inc/cheapcgi.h	40;"	d
COLOR_WHITE	inc/cheapcgi.h	35;"	d
COLOR_YELLOW	inc/cheapcgi.h	33;"	d
COLPIXVGA13	lib/gifcodes.h	20;"	d
COLSHIFT	lib/gifcodes.h	18;"	d
COLTAB	lib/gifcodes.h	16;"	d
COLUMNINFO_H	hg/inc/columnInfo.h	6;"	d
COMMON_H	inc/common.h	10;"	d
COMPILE_WITH_SAMTOOLS	inc/bamFile.h	24;"	d
COMPILE_WITH_TABIX	inc/linefile.h	271;"	d
COMPLEMENT_BASES_VAR	hg/inc/hui.h	97;"	d
COMPLEMENT_PREFIX	hg/lib/genbank.c	/^static char *COMPLEMENT_PREFIX = "complement(";$/;"	v	file:
COMPOSITE_CHILD_MASK	hg/inc/trackDb.h	80;"	d
COMPOSITE_CHILD_NODE	hg/inc/trackDb.h	93;"	d
COMPOSITE_MASK	hg/inc/trackDb.h	77;"	d
COMPOSITE_NODE	hg/inc/trackDb.h	89;"	d
COMPOSITE_VIEW_MASK	hg/inc/trackDb.h	81;"	d
COMPOSITE_VIEW_NODE	hg/inc/trackDb.h	94;"	d
CONS_WIGGLE	hg/inc/hgMaf.h	25;"	d
CONTAINER_CHILD_NODE	hg/inc/trackDb.h	96;"	d
CONTAINER_NODE	hg/inc/trackDb.h	91;"	d
CONTIGACC_H	hg/inc/contigAcc.h	6;"	d
CONTIGACC_NUM_COLS	hg/inc/contigAcc.h	8;"	d
CONTROL_TABLE_WIDTH	hg/inc/hui.h	123;"	d
COORDCONV_H	hg/inc/coordConv.h	38;"	d
CORRELATE_H	inc/correlate.h	6;"	d
CPGISLANDEXT_H	hg/inc/cpgIslandExt.h	6;"	d
CPGISLANDEXT_NUM_COLS	hg/inc/cpgIslandExt.h	8;"	d
CPGISLAND_H	hg/inc/cpgIsland.h	6;"	d
CREATE_ERROR	lib/gifcodes.h	44;"	d
CRTREE_H	inc/crTree.h	35;"	d
CRUDEALI_H	inc/crudeali.h	9;"	d
CTGPOS2_H	hg/inc/ctgPos2.h	6;"	d
CTGPOS2_NUM_COLS	hg/inc/ctgPos2.h	8;"	d
CTGPOS_H	hg/inc/ctgPos.h	6;"	d
CT_ADD_BUTTON_LABEL	hg/inc/customTrack.h	22;"	d
CT_CUSTOM_DOC_FILE_BIN_VAR	hg/lib/customTrack.c	682;"	d	file:
CT_CUSTOM_DOC_FILE_NAME_VAR	hg/inc/customTrack.h	72;"	d
CT_CUSTOM_DOC_FILE_VAR	hg/inc/customTrack.h	71;"	d
CT_CUSTOM_DOC_TEXT_VAR	hg/inc/customTrack.h	70;"	d
CT_CUSTOM_FILE_BIN_VAR	hg/lib/customTrack.c	681;"	d	file:
CT_CUSTOM_FILE_NAME_VAR	hg/inc/customTrack.h	69;"	d
CT_CUSTOM_FILE_VAR	hg/inc/customTrack.h	68;"	d
CT_CUSTOM_TEXT_ALT_VAR	hg/inc/customTrack.h	67;"	d
CT_CUSTOM_TEXT_VAR	hg/inc/customTrack.h	65;"	d
CT_DEFAULT_TRACK_DESCR	hg/inc/customTrack.h	19;"	d
CT_DEFAULT_TRACK_NAME	hg/inc/customTrack.h	18;"	d
CT_DO_REMOVE_VAR	hg/inc/customTrack.h	74;"	d
CT_EXTFILE	hg/inc/customTrack.h	126;"	d
CT_FILE_VAR_PREFIX	hg/inc/customTrack.h	17;"	d
CT_MANAGE_BUTTON_LABEL	hg/inc/customTrack.h	21;"	d
CT_META_INFO	hg/inc/customTrack.h	124;"	d
CT_PREFIX	hg/inc/customTrack.h	16;"	d
CT_SELECTED_TABLE_VAR	hg/inc/customTrack.h	75;"	d
CT_UNPARSED	hg/inc/customTrack.h	26;"	d
CT_UPDATED_TABLE_VAR	hg/inc/customTrack.h	76;"	d
CUSTOMFACTORY_H	hg/inc/customFactory.h	5;"	d
CUSTOMPP_H	hg/inc/customPp.h	11;"	d
CUSTOMTRACK_H	hg/inc/customTrack.h	3;"	d
CUSTOM_TRACKS_PROFILE	hg/inc/customTrack.h	122;"	d
CUSTOM_TRASH	hg/inc/customTrack.h	120;"	d
CUTTERS_POPULAR	hg/inc/hui.h	78;"	d
CUTTERS_TRACK_LABEL	hg/inc/hui.h	80;"	d
CUTTERS_TRACK_LONGLABEL	hg/inc/hui.h	81;"	d
CUTTERS_TRACK_NAME	hg/inc/hui.h	79;"	d
CUTTER_H	hg/inc/cutter.h	6;"	d
CUTTER_NUM_COLS	hg/inc/cutter.h	12;"	d
CV_ANTIBODY_DESCRIPTION	hg/inc/cv.h	33;"	d
CV_DATA_GROUP	hg/inc/cv.h	37;"	d
CV_DESCRIPTION	hg/inc/cv.h	17;"	d
CV_FILE_NAME	hg/inc/cv.h	8;"	d
CV_GEO	hg/inc/cv.h	20;"	d
CV_H	hg/inc/cv.h	5;"	d
CV_KARYOTYPE	hg/inc/cv.h	32;"	d
CV_LABEL	hg/inc/cv.h	13;"	d
CV_LABEL_EMPTY_IS_NONE	hg/inc/cv.h	70;"	d
CV_LINEAGE	hg/inc/cv.h	21;"	d
CV_ORDER_URL	hg/inc/cv.h	22;"	d
CV_ORGANISM	hg/inc/cv.h	23;"	d
CV_PROTOCOL	hg/inc/cv.h	24;"	d
CV_SEARCHABLE_FREE_TEXT	hg/lib/cv.c	25;"	d	file:
CV_SEARCHABLE_MULTI_SELECT	hg/lib/cv.c	24;"	d	file:
CV_SEARCHABLE_SINGLE_SELECT	hg/lib/cv.c	23;"	d	file:
CV_SEARCHABLE_WILD_LIST	hg/lib/cv.c	26;"	d	file:
CV_SEX	hg/inc/cv.h	25;"	d
CV_TAG	hg/inc/cv.h	14;"	d
CV_TARGET	hg/inc/cv.h	15;"	d
CV_TARGET_DESCRIPTION	hg/inc/cv.h	34;"	d
CV_TARGET_ID	hg/inc/cv.h	35;"	d
CV_TARGET_URL	hg/inc/cv.h	36;"	d
CV_TERM	hg/inc/cv.h	11;"	d
CV_TERM_ANTIBODY	hg/inc/cv.h	63;"	d
CV_TERM_CELL	hg/inc/cv.h	62;"	d
CV_TERM_CONTROL	hg/inc/cv.h	64;"	d
CV_TERM_DATA_TYPE	hg/inc/cv.h	65;"	d
CV_TERM_GRANT	hg/inc/cv.h	60;"	d
CV_TERM_ID	hg/inc/cv.h	26;"	d
CV_TERM_LAB	hg/inc/cv.h	61;"	d
CV_TERM_LOCALIZATION	hg/inc/cv.h	66;"	d
CV_TERM_SEQ_PLATFORM	hg/inc/cv.h	68;"	d
CV_TERM_URL	hg/inc/cv.h	27;"	d
CV_TERM_VIEW	hg/inc/cv.h	67;"	d
CV_TIER	hg/inc/cv.h	28;"	d
CV_TISSUE	hg/inc/cv.h	29;"	d
CV_TITLE	hg/inc/cv.h	16;"	d
CV_TOT	hg/inc/cv.h	40;"	d
CV_TOT_CV_DEFINED	hg/inc/cv.h	42;"	d
CV_TOT_HIDDEN	hg/inc/cv.h	41;"	d
CV_TOT_PRIORITY	hg/inc/cv.h	43;"	d
CV_TOT_SEARCHABLE	hg/inc/cv.h	44;"	d
CV_TYPE	hg/inc/cv.h	12;"	d
CV_UGLY_TERM_ANTIBODY	hg/lib/cv.c	20;"	d	file:
CV_UGLY_TERM_CELL_LINE	hg/lib/cv.c	19;"	d	file:
CV_UGLY_TOT_CELLTYPE	hg/lib/cv.c	18;"	d	file:
CV_UNKNOWN	hg/lib/cv.c	54;"	d	file:
CV_VALIDATE	hg/inc/cv.h	47;"	d
CV_VALIDATE_CV	hg/inc/cv.h	48;"	d
CV_VALIDATE_CV_OR_CONTROL	hg/inc/cv.h	50;"	d
CV_VALIDATE_CV_OR_NONE	hg/inc/cv.h	49;"	d
CV_VALIDATE_DATE	hg/inc/cv.h	51;"	d
CV_VALIDATE_EXISTS	hg/inc/cv.h	52;"	d
CV_VALIDATE_FLOAT	hg/inc/cv.h	53;"	d
CV_VALIDATE_INT	hg/inc/cv.h	54;"	d
CV_VALIDATE_LIST	hg/inc/cv.h	55;"	d
CV_VALIDATE_NONE	hg/inc/cv.h	57;"	d
CV_VALIDATE_REGEX	hg/inc/cv.h	56;"	d
CV_VENDOR_ID	hg/inc/cv.h	30;"	d
CV_VENDOR_NAME	hg/inc/cv.h	31;"	d
CYTOBAND_H	hg/inc/cytoBand.h	6;"	d
C_BASE_VAL	inc/dnautil.h	25;"	d
C_CHAR	lib/oligoTm.c	160;"	d	file:
Cdna_T1	hg/inc/ispyTables.h	/^    char *Cdna_T1;	\/* CDNA at T1 *\/$/;"	m	struct:cdna
Cdna_T2	hg/inc/ispyTables.h	/^    char *Cdna_T2;	\/* CDNA at T2 *\/$/;"	m	struct:cdna
Cdna_T3	hg/inc/ispyTables.h	/^    char *Cdna_T3;	\/* CDNA at T3 *\/$/;"	m	struct:cdna
Cdna_T4	hg/inc/ispyTables.h	/^    char *Cdna_T4;	\/* CDNA at T4 *\/$/;"	m	struct:cdna
Chemo	hg/inc/ispyTables.h	/^    char *Chemo;	\/* Neo-Adjuvant Chemotherapy Regimen *\/$/;"	m	struct:chemo
ChemoCat	hg/inc/ispyTables.h	/^    char *ChemoCat;	\/* CHEMOCAT *\/$/;"	m	struct:mr
ChemoCat	hg/inc/ispyTables.h	/^    char *ChemoCat;	\/* Chemotherapy Group Category *\/$/;"	m	struct:chemo
Chopper	hg/lib/chromGraphFactory.c	/^typedef int (*Chopper)(char *line, char **cols, int maxCol);$/;"	t	file:
Chr	hg/inc/stsInfoMouse.h	/^    char *Chr;	\/* Chromosome in Genetic map *\/$/;"	m	struct:stsInfoMouse
ClinRespT1_T2	hg/inc/ispyTables.h	/^    char *ClinRespT1_T2;	\/* Clinical Response Baseline to Early Treatment *\/$/;"	m	struct:respEval
ClinRespT1_T3	hg/inc/ispyTables.h	/^    char *ClinRespT1_T3;	\/* Clinical Response Baseline to Inter-Regimen *\/$/;"	m	struct:respEval
ClinRespT1_T4	hg/inc/ispyTables.h	/^    char *ClinRespT1_T4;	\/* Clinical Response Baseline to Pre-Surgery *\/$/;"	m	struct:respEval
ClinicalStage	hg/inc/ispyTables.h	/^    char *ClinicalStage;	\/* Clinical Staging at Baseline *\/$/;"	m	struct:respEval
CloneArray	inc/common.h	255;"	d
CloneVar	inc/common.h	219;"	d
CmpFunction	inc/common.h	/^typedef int CmpFunction(const void *elem1, const void *elem2);$/;"	t
Codon	inc/dnautil.h	/^typedef char Codon; \/* Our codon type. *\/$/;"	t
Color	inc/memgfx.h	/^typedef unsigned char Color;$/;"	t
Color	inc/memgfx.h	/^typedef unsigned int Color;$/;"	t
Complex_transcript_variant	hg/inc/soterm.h	/^    Complex_transcript_variant=1577,$/;"	e	enum:__anon11
ConnectCost	inc/chainBlock.h	/^typedef int (*ConnectCost)(struct cBlock *a, struct cBlock *b, void *gapData);$/;"	t
CopyArray	inc/common.h	252;"	d
DASH	lib/mafScore.c	19;"	d	file:
DBDB_H	hg/inc/dbDb.h	6;"	d
DBDB_NUM_COLS	hg/inc/dbDb.h	8;"	d
DBGMSGSZ	hg/inc/wiggle.h	299;"	d
DBGMSGSZ	hg/lib/wiggleCart.c	53;"	d	file:
DBRIP_H	hg/inc/dbRIP.h	6;"	d
DBRIP_NUM_COLS	hg/inc/dbRIP.h	12;"	d
DBSNPRS_H	hg/inc/dbSnpRs.h	6;"	d
DBSNPRS_NUM_COLS	hg/inc/dbSnpRs.h	12;"	d
DCISonly	hg/inc/ispyTables.h	/^    char *DCISonly;	\/* DCIS only thing left following surgery *\/$/;"	m	struct:postSurgery
DEFAULTDB_H	hg/inc/defaultDb.h	6;"	d
DEFAULTVIEWLIMITS	hg/inc/wiggle.h	258;"	d
DEFAULT_BACKGROUND	hg/inc/hui.h	35;"	d
DEFAULT_BIN_COUNT	inc/histogram.h	6;"	d
DEFAULT_BROWSER	hg/inc/wikiTrack.h	142;"	d
DEFAULT_BUTTON	hg/lib/hui.c	51;"	d	file:
DEFAULT_BUTTON	hg/lib/hui.c	57;"	d	file:
DEFAULT_CONS_LABEL	hg/inc/hgMaf.h	27;"	d
DEFAULT_GENOME	hg/lib/hdb.c	44;"	d	file:
DEFAULT_GENOME	hg/lib/hdb.c	47;"	d	file:
DEFAULT_HEIGHT_PER	hg/inc/wiggle.h	86;"	d
DEFAULT_MAX_BED_GRAPH	hg/inc/wiggle.h	85;"	d
DEFAULT_MAX_Yv	hg/inc/wiggle.h	83;"	d
DEFAULT_MIN_BED_GRAPH	hg/inc/wiggle.h	84;"	d
DEFAULT_MIN_Yv	hg/inc/wiggle.h	82;"	d
DEFAULT_PIX_WIDTH	hg/inc/hCommon.h	91;"	d
DEFAULT_PROTEINS	hg/lib/hdb.c	43;"	d	file:
DEFAULT_PROTEINS	hg/lib/hdb.c	46;"	d	file:
DEF_BUTTON	hg/lib/hui.c	56;"	d	file:
DELCONRAD2_H	hg/inc/delConrad2.h	6;"	d
DELCONRAD2_NUM_COLS	hg/inc/delConrad2.h	8;"	d
DELHINDS2_H	hg/inc/delHinds2.h	6;"	d
DELHINDS2_NUM_COLS	hg/inc/delHinds2.h	8;"	d
DGV_H	hg/inc/dgv.h	6;"	d
DGV_NUM_COLS	hg/inc/dgv.h	8;"	d
DIGRAPH_H	inc/diGraph.h	3;"	d
DISEASE_DEFAULT	hg/inc/dbRIP.h	123;"	d
DIVIDER_PRINT	hg/lib/hui.c	3570;"	d	file:
DIVIDING_LINE	hg/lib/hui.c	3569;"	d	file:
DLESS_H	hg/inc/dless.h	6;"	d
DLESS_NUM_COLS	hg/inc/dless.h	8;"	d
DLIST_H	inc/dlist.h	7;"	d
DNA	inc/dnautil.h	/^typedef char DNA;$/;"	t
DNALOAD_H	inc/dnaLoad.h	4;"	d
DNAMARKOVSQL_H	hg/inc/dnaMarkovSql.h	4;"	d
DNAMARKOV_H	inc/dnaMarkov.h	5;"	d
DNAMOTIFSQL_H	hg/inc/dnaMotifSql.h	17;"	d
DNAMOTIF_H	hg/inc/dnaMotifSql.h	11;"	d
DNAMOTIF_H	inc/dnaMotif.h	6;"	d
DNAPROBE_H	hg/inc/dnaProbe.h	6;"	d
DNASEQ_H	inc/dnaseq.h	7;"	d
DNAUTIL_H	inc/dnautil.h	17;"	d
DNA_scores	lib/mafScore.c	/^static void DNA_scores(ss_t ss)$/;"	f	file:
DNApercent	hg/inc/cnpSharp.h	/^    float DNApercent;	\/* 0 to 1 *\/$/;"	m	struct:cnpSharp
DOCUMENT_ROOT	hg/inc/hui.h	32;"	d
DOWNDIR	lib/mgPolygon.c	39;"	d	file:
DOWNLOADS_ONLY_TITLE	hg/inc/fileUi.h	9;"	d
DOWNLOADS_ONLY_TYPE	hg/inc/trackDb.h	269;"	d
DO_PAIR	lib/oligoTm.c	165;"	d	file:
DO_PAIR	lib/oligoTm.c	239;"	d	file:
DO_PAIR	lib/oligoTm.c	241;"	d	file:
DTDPARSE_H	inc/dtdParse.h	6;"	d
DUMP_LEVEL	lib/blastParse.c	14;"	d	file:
DVBED_H	hg/inc/dvBed.h	6;"	d
DVBED_NUM_COLS	hg/inc/dvBed.h	8;"	d
DVXREF2_H	hg/inc/dvXref2.h	6;"	d
DVXREF2_NUM_COLS	hg/inc/dvXref2.h	8;"	d
DV_H	hg/inc/dv.h	6;"	d
DV_NUM_COLS	hg/inc/dv.h	8;"	d
DYSTRING_H	inc/dystring.h	7;"	d
DataExtractDt	hg/inc/ispyTables.h	/^    char *DataExtractDt;	\/* Date data was downloaded from the CALGB database *\/$/;"	m	struct:patient
DataExtractDt	hg/inc/ispyTables.h	/^    char *DataExtractDt;	\/* Date data was downloaded from the CALGB database *\/$/;"	m	struct:patientInfo
DbConnector	hg/inc/cart.h	/^typedef struct sqlConnection *(*DbConnector)();$/;"	t	typeref:struct:DbConnector
DbDisconnect	hg/inc/cart.h	/^typedef void (*DbDisconnect)(struct sqlConnection **pConn);$/;"	t
DoseDenseAnthra	hg/inc/ispyTables.h	/^    char *DoseDenseAnthra;	\/* DOSEDENSEANTHRA *\/$/;"	m	struct:mr
DoseDenseAnthra	hg/inc/ispyTables.h	/^    char *DoseDenseAnthra;	\/* Dose Dense Anthracycline Therapy? *\/$/;"	m	struct:chemo
DoseDenseTaxane	hg/inc/ispyTables.h	/^    char *DoseDenseTaxane;	\/* DOSEDENSETAXANE *\/$/;"	m	struct:mr
DoseDenseTaxane	hg/inc/ispyTables.h	/^    char *DoseDenseTaxane;	\/* Dose Dense Taxane Therapy? *\/$/;"	m	struct:chemo
E	lib/mafScore.c	/^	int E;$/;"	m	struct:gap_scores	file:
EASYGENE_H	hg/inc/easyGene.h	6;"	d
EASYGENE_NUM_COLS	hg/inc/easyGene.h	8;"	d
ECATTRIBUTECODE_H	hg/inc/ecAttributeCode.h	6;"	d
ECATTRIBUTECODE_NUM_COLS	hg/inc/ecAttributeCode.h	8;"	d
ECATTRIBUTE_H	hg/inc/ecAttribute.h	6;"	d
ECATTRIBUTE_NUM_COLS	hg/inc/ecAttribute.h	8;"	d
ECCODE_H	hg/inc/ecCode.h	6;"	d
ECCODE_NUM_COLS	hg/inc/ecCode.h	8;"	d
EC_H	hg/inc/ec.h	3;"	d
EMAIL_NEEDS_TO_BE_VERIFIED	hg/inc/wikiTrack.h	144;"	d
EMBLPARSE_H	inc/emblParse.h	47;"	d
ENCODE_ALN	hg/lib/mdb.c	496;"	d	file:
ENCODE_DATA_RELEASE_POLICY	hg/inc/hui.h	40;"	d
ENCODE_DCC_DOWNLOADS	hg/inc/fileUi.h	13;"	d
ENCODE_RSIG	hg/lib/mdb.c	497;"	d	file:
ENSEMBL_LIFT	hg/inc/ensFace.h	17;"	d
ENSFACE_H	hg/inc/ensFace.h	4;"	d
ENSINFO_H	hg/inc/ensInfo.h	6;"	d
ENSINFO_NUM_COLS	hg/inc/ensInfo.h	8;"	d
ENSPHUSIONBLAST_H	hg/inc/ensPhusionBlast.h	6;"	d
ENSXREFZFISH_H	hg/inc/ensXRefZfish.h	6;"	d
ENSXREFZFISH_NUM_COLS	hg/inc/ensXRefZfish.h	8;"	d
ENS_H	inc/ens.h	8;"	d
ERRABORT_H	inc/errabort.h	19;"	d
ERRCATCH_H	inc/errCatch.h	17;"	d
ER_TS	hg/inc/ispyTables.h	/^    int *ER_TS;	\/* Estrogen Receptor Status - Total Score Total Score = ER_PS+ ER_IS Considered Allred Score; 3 is positive *\/$/;"	m	struct:onStudy
ERpos	hg/inc/ispyTables.h	/^    char *ERpos;	\/* Estrogen Receptor Status (Allred Score or Community determined) *\/$/;"	m	struct:onStudy
EST3_H	hg/inc/est3.h	6;"	d
ESTORIENTINFO_H	hg/inc/estOrientInfo.h	6;"	d
ESTPAIR_H	hg/inc/estPair.h	6;"	d
EST_ORIENT_INFO_NUM_COLS	hg/inc/estOrientInfo.h	11;"	d
ETHNIC_GROUP	hg/inc/dbRIP.h	114;"	d
ETHNIC_GROUP_DEFAULT	hg/inc/dbRIP.h	121;"	d
ETHNIC_GROUP_EXCINC	hg/inc/dbRIP.h	115;"	d
ETHNIC_NOT_DEFAULT	hg/inc/dbRIP.h	122;"	d
EXOFISH_H	hg/inc/exoFish.h	6;"	d
EXPDATA_H	hg/inc/expData.h	6;"	d
EXPDATA_NUM_COLS	hg/inc/expData.h	8;"	d
EXPECTED_MDTM_FORMAT	lib/net.c	689;"	d	file:
EXPRBED_H	hg/inc/exprBed.h	6;"	d
EXPRECORD_H	hg/inc/expRecord.h	6;"	d
EXTENDED_DNA_BUTTON	hg/inc/hui.h	127;"	d
ExpandArray	inc/common.h	248;"	d
F	lib/md5.c	109;"	d	file:
F	lib/md5.c	111;"	d	file:
F	lib/md5.c	130;"	d	file:
F	lib/md5.c	132;"	d	file:
F	lib/md5.c	151;"	d	file:
F	lib/md5.c	69;"	d	file:
F	lib/md5.c	88;"	d	file:
F	lib/md5.c	90;"	d	file:
FACTOR	lib/chain.c	162;"	d	file:
FALSE	inc/common.h	97;"	d
FA_H	inc/fa.h	7;"	d
FBALLELE_NUM_COLS	hg/inc/fbTables.h	162;"	d
FBGENE_NUM_COLS	hg/inc/fbTables.h	8;"	d
FBGO_NUM_COLS	hg/inc/fbTables.h	371;"	d
FBPHENOTYPE_NUM_COLS	hg/inc/fbTables.h	318;"	d
FBREF_NUM_COLS	hg/inc/fbTables.h	214;"	d
FBROLE_NUM_COLS	hg/inc/fbTables.h	265;"	d
FBSYNONYM_NUM_COLS	hg/inc/fbTables.h	111;"	d
FBTABLES_H	hg/inc/fbTables.h	6;"	d
FBTRANSCRIPT_NUM_COLS	hg/inc/fbTables.h	60;"	d
FEATUREBITS_H	hg/inc/featureBits.h	3;"	d
FILEEXT_LEN	inc/common.h	129;"	d
FILENAME_LEN	inc/common.h	128;"	d
FILEPATH_H	inc/filePath.h	3;"	d
FILEUI_H	hg/inc/fileUi.h	4;"	d
FILE_BUF_SIZE	lib/pipeline.c	54;"	d	file:
FILE_SORT_ORDER	hg/inc/fileUi.h	10;"	d
FILE_SORT_ORDER_DEFAULT	hg/lib/fileUi.c	290;"	d	file:
FILTERBY_HELP_LINK	hg/lib/fileUi.c	569;"	d	file:
FILTERBY_HELP_LINK	hg/lib/hui.c	3492;"	d	file:
FILTER_BY	hg/inc/hui.h	1154;"	d
FILTER_BY_FORMAT	hg/lib/hui.c	3518;"	d	file:
FILTER_COMPOSITE_FORMAT	hg/lib/hui.c	6764;"	d	file:
FINDKGALIAS_H	hg/inc/findKGAlias.h	3;"	d
FINDKGPROTALIAS_H	hg/inc/findKGProtAlias.h	3;"	d
FISHCLONES_H	hg/inc/fishClones.h	6;"	d
FISH_NUM_COLS	hg/inc/ispyTables.h	924;"	d
FLYBASE2004XREF_H	hg/inc/flyBase2004Xref.h	6;"	d
FLYBASE2004XREF_NUM_COLS	hg/inc/flyBase2004Xref.h	8;"	d
FLYBASESWISSPROT_H	hg/inc/flyBaseSwissProt.h	6;"	d
FLYBASESWISSPROT_NUM_COLS	hg/inc/flyBaseSwissProt.h	8;"	d
FLYDNA_H	inc/flydna.h	9;"	d
FLYREG2_H	hg/inc/flyreg2.h	6;"	d
FLYREG2_NUM_COLS	hg/inc/flyreg2.h	8;"	d
FLYREG_H	hg/inc/flyreg.h	6;"	d
FLYREG_NUM_COLS	hg/inc/flyreg.h	8;"	d
FOLDER_CHILD_MASK	hg/inc/trackDb.h	79;"	d
FOLDER_CHILD_NODE	hg/inc/trackDb.h	92;"	d
FOLDER_MASK	hg/inc/trackDb.h	76;"	d
FOLDER_NODE	hg/inc/trackDb.h	88;"	d
FOLLOWUP_NUM_COLS	hg/inc/ispyTables.h	426;"	d
FOSENDPAIRS_H	hg/inc/fosEndPairs.h	6;"	d
FOUND_FILE_LIMIT	hg/lib/fileUi.c	1088;"	d	file:
FOUR_STATE_CHECKED	hg/inc/hui.h	1215;"	d
FOUR_STATE_CHECKED_DISABLED	hg/inc/hui.h	1216;"	d
FOUR_STATE_DISABLE	hg/lib/hui.c	2142;"	d	file:
FOUR_STATE_EMPTY	hg/lib/hui.c	2138;"	d	file:
FOUR_STATE_ENABLE	hg/lib/hui.c	2143;"	d	file:
FOUR_STATE_UNCHECKED	hg/inc/hui.h	1214;"	d
FUZZYFIND_H	inc/fuzzyFind.h	33;"	d
Fish_T1	hg/inc/ispyTables.h	/^    char *Fish_T1;	\/* FISH at T1 *\/$/;"	m	struct:fish
Fish_T2	hg/inc/ispyTables.h	/^    char *Fish_T2;	\/* FISH at T2 *\/$/;"	m	struct:fish
Fish_T3	hg/inc/ispyTables.h	/^    char *Fish_T3;	\/* FISH at T3 *\/$/;"	m	struct:fish
Fish_T4	hg/inc/ispyTables.h	/^    char *Fish_T4;	\/* FISH at T4 *\/$/;"	m	struct:fish
G	hg/inc/simpleRepeat.h	/^    unsigned G;	\/* Number of G's in repeat unit *\/$/;"	m	struct:simpleRepeat
GAP	lib/mafScore.c	18;"	d	file:
GAPCALC_H	inc/gapCalc.h	5;"	d
GBEXTFILE_H	hg/inc/gbExtFile.h	6;"	d
GBEXTFILE_NUM_COLS	hg/inc/gbExtFile.h	8;"	d
GBMISCDIFF_H	hg/inc/gbMiscDiff.h	6;"	d
GBMISCDIFF_NUM_COLS	hg/inc/gbMiscDiff.h	8;"	d
GBPROTANN_H	hg/inc/gbProtAnn.h	6;"	d
GBRNAS_H	hg/inc/gbRNAs.h	6;"	d
GBRNAS_NUM_COLS	hg/inc/gbRNAs.h	8;"	d
GBSEQ_H	hg/inc/gbSeq.h	6;"	d
GBSEQ_NUM_COLS	hg/inc/gbSeq.h	8;"	d
GBSEQ_TBL_SET	hg/lib/hdb.c	1276;"	d	file:
GBWARN_H	hg/inc/gbWarn.h	6;"	d
GBWARN_NUM_COLS	hg/inc/gbWarn.h	8;"	d
GCPERCENT_H	hg/inc/gcPercent.h	6;"	d
GCwiggleDropDown	hg/lib/hui.c	/^void GCwiggleDropDown(char *var, char *curVal)$/;"	f
GCwiggleEnumToString	hg/lib/hui.c	/^char *GCwiggleEnumToString(enum GCwiggleOptEnum x)$/;"	f
GCwiggleLinearInterpolation	hg/inc/hui.h	/^   GCwiggleLinearInterpolation = 1,$/;"	e	enum:GCwiggleOptEnum
GCwiggleNoInterpolation	hg/inc/hui.h	/^   GCwiggleNoInterpolation = 0,$/;"	e	enum:GCwiggleOptEnum
GCwiggleOptEnum	hg/inc/hui.h	/^enum GCwiggleOptEnum {$/;"	g
GCwiggleOptions	hg/lib/hui.c	/^static char *GCwiggleOptions[] = {$/;"	v	file:
GCwiggleStringToEnum	hg/lib/hui.c	/^enum GCwiggleOptEnum GCwiggleStringToEnum(char *string)$/;"	f
GDF_H	inc/gdf.h	9;"	d
GEMFONT_H	lib/gemfont.h	7;"	d
GENBANK_ACC_BUFSZ	hg/inc/genbank.h	6;"	d
GENBANK_H	hg/inc/genbank.h	3;"	d
GENCODEGENECLASS_H	hg/inc/gencodeGeneClass.h	6;"	d
GENCODEGENECLASS_NUM_COLS	hg/inc/gencodeGeneClass.h	12;"	d
GENCODEINTRON_H	hg/inc/gencodeIntron.h	6;"	d
GENCODEINTRON_NUM_COLS	hg/inc/gencodeIntron.h	12;"	d
GENEBANDS_H	hg/inc/geneBands.h	6;"	d
GENECHECKDETAILS_H	hg/inc/geneCheckDetails.h	6;"	d
GENECHECKDETAILS_NUM_COLS	hg/inc/geneCheckDetails.h	8;"	d
GENECHECKWIDGET_H	hg/inc/geneCheckWidget.h	4;"	d
GENECHECK_H	hg/inc/geneCheck.h	6;"	d
GENECHECK_NUM_COLS	hg/inc/geneCheck.h	8;"	d
GENEGRAPH_H	hg/inc/geneGraph.h	12;"	d
GENEPIX_H	hg/inc/genePix.h	4;"	d
GENEPREDREADER_H	hg/inc/genePredReader.h	5;"	d
GENEPREDX_NUM_COLS	hg/inc/genePred.h	97;"	d
GENEPRED_CLASS_CLASS_COLUMN	hg/inc/hui.h	664;"	d
GENEPRED_CLASS_CLASS_COLUMN_DEFAULT	hg/inc/hui.h	665;"	d
GENEPRED_CLASS_NAME_COLUMN	hg/inc/hui.h	662;"	d
GENEPRED_CLASS_NAME_COLUMN_DEFAULT	hg/inc/hui.h	663;"	d
GENEPRED_CLASS_PREFIX	hg/inc/hui.h	660;"	d
GENEPRED_CLASS_TBL	hg/inc/hui.h	661;"	d
GENEPRED_CLASS_VAR	hg/inc/hui.h	659;"	d
GENEPRED_H	hg/inc/genePred.h	6;"	d
GENEPRED_NUM_COLS	hg/inc/genePred.h	96;"	d
GENESIMILARITIES_H	hg/inc/geneSimilarities.h	4;"	d
GENETREE_H	hg/inc/geneTree.h	6;"	d
GENETREE_NUM_COLS	hg/inc/geneTree.h	8;"	d
GENE_CLASS	hg/inc/wikiTrack.h	148;"	d
GENMAPDB_H	hg/inc/genMapDb.h	6;"	d
GENOFIND_H	inc/genoFind.h	6;"	d
GENOLAY_H	hg/inc/genoLay.h	5;"	d
GENOMERANGETREEFILE_H	hg/inc/genomeRangeTreeFile.h	8;"	d
GENOMERANGETREE_H	inc/genomeRangeTree.h	11;"	d
GENOMEVARUI_H	hg/inc/gvUi.h	3;"	d
GENOMICDUPS_H	hg/inc/genomicDups.h	6;"	d
GENOMICSUPERDUPS_H	hg/inc/genomicSuperDups.h	6;"	d
GENOTYPEFREQS_H	hg/inc/genotypeFreqs.h	6;"	d
GENOTYPEFREQS_NUM_COLS	hg/inc/genotypeFreqs.h	12;"	d
GENOTYPE_H	hg/inc/genotype.h	6;"	d
GENOTYPE_NUM_COLS	hg/inc/genotype.h	12;"	d
GENO_REGION	hg/inc/dbRIP.h	111;"	d
GENO_REGION_DEFAULT	hg/inc/dbRIP.h	118;"	d
GEOMIRROR_H	hg/inc/geoMirror.h	4;"	d
GET_UINT32	lib/md5.c	11;"	d	file:
GFCLIENTLIB_H	inc/gfClientLib.h	5;"	d
GFF_H	inc/gff.h	9;"	d
GFPCRLIB_H	inc/gfPcrLib.h	5;"	d
GFXPOLY_H	inc/gfxPoly.h	4;"	d
GGMRNAALI_H	hg/inc/ggMrnaAli.h	6;"	d
GGTYPES_H	hg/inc/ggTypes.h	4;"	d
GI	hg/inc/codeBlastScore.h	/^    unsigned GI;	\/* GI Number *\/$/;"	m	struct:codeBlastScore
GI	hg/inc/sargassoSeaXra.h	/^    unsigned GI;	\/* GI Number *\/$/;"	m	struct:sargassoSeaXra
GLDBREP_H	hg/inc/glDbRep.h	6;"	d
GLOBAL_CONFIG_FILE	hg/lib/hgConfig.c	16;"	d	file:
GLOBAL_CONFIG_PATH	hg/lib/hgConfig.c	15;"	d	file:
GOAPART_H	hg/inc/goaPart.h	6;"	d
GOAPART_NUM_COLS	hg/inc/goaPart.h	8;"	d
GOA_H	hg/inc/goa.h	6;"	d
GOA_NUM_COLS	hg/inc/goa.h	8;"	d
GOOGLEANALYTICS_H	hg/inc/googleAnalytics.h	2;"	d
GPFX_H	hg/inc/gpFx.h	2;"	d
GPRANGE	hg/inc/gpFx.h	20;"	d
GRAPHTYPE	hg/inc/wiggle.h	274;"	d
GRAPHTYPEDEFAULT	hg/inc/wiggle.h	275;"	d
GRAY_LEVEL_SCORE_MIN	hg/inc/hui.h	1004;"	d
GRAY_SCALE	hg/inc/netCart.h	10;"	d
GRIDDEFAULT	hg/inc/wiggle.h	267;"	d
GROWTHCONDITION_H	hg/inc/growthCondition.h	6;"	d
GROWTHCONDITION_NUM_COLS	hg/inc/growthCondition.h	8;"	d
GRP_H	hg/inc/grp.h	6;"	d
GVATTRLONG_NUM_COLS	hg/inc/gv.h	407;"	d
GVATTR_NUM_COLS	hg/inc/gv.h	251;"	d
GVLINK_NUM_COLS	hg/inc/gv.h	328;"	d
GVPOS_NUM_COLS	hg/inc/gv.h	92;"	d
GVSRC_NUM_COLS	hg/inc/gv.h	174;"	d
GV_H	hg/inc/gv.h	6;"	d
GV_NUM_COLS	hg/inc/gv.h	12;"	d
GWASCATALOG_H	hg/inc/gwasCatalog.h	6;"	d
GWASCATALOG_NUM_COLS	hg/inc/gwasCatalog.h	8;"	d
G_ADD_WIKI_COMMENTS	hg/inc/wikiTrack.h	126;"	d
G_A_A	lib/oligoTm.c	127;"	d	file:
G_A_C	lib/oligoTm.c	128;"	d	file:
G_A_G	lib/oligoTm.c	129;"	d	file:
G_A_N	lib/oligoTm.c	131;"	d	file:
G_A_T	lib/oligoTm.c	130;"	d	file:
G_BASE_VAL	inc/dnautil.h	27;"	d
G_CHAR	lib/oligoTm.c	158;"	d	file:
G_CREATE_WIKI_ITEM	hg/inc/wikiTrack.h	125;"	d
G_C_A	lib/oligoTm.c	133;"	d	file:
G_C_C	lib/oligoTm.c	134;"	d	file:
G_C_G	lib/oligoTm.c	135;"	d	file:
G_C_N	lib/oligoTm.c	137;"	d	file:
G_C_T	lib/oligoTm.c	136;"	d	file:
G_DELETE_WIKI_ITEM	hg/inc/wikiTrack.h	127;"	d
G_G_A	lib/oligoTm.c	139;"	d	file:
G_G_C	lib/oligoTm.c	140;"	d	file:
G_G_G	lib/oligoTm.c	141;"	d	file:
G_G_N	lib/oligoTm.c	143;"	d	file:
G_G_T	lib/oligoTm.c	142;"	d	file:
G_N_A	lib/oligoTm.c	151;"	d	file:
G_N_C	lib/oligoTm.c	152;"	d	file:
G_N_G	lib/oligoTm.c	153;"	d	file:
G_N_N	lib/oligoTm.c	155;"	d	file:
G_N_T	lib/oligoTm.c	154;"	d	file:
G_T_A	lib/oligoTm.c	145;"	d	file:
G_T_C	lib/oligoTm.c	146;"	d	file:
G_T_G	lib/oligoTm.c	147;"	d	file:
G_T_N	lib/oligoTm.c	149;"	d	file:
G_T_T	lib/oligoTm.c	148;"	d	file:
GapCost	inc/chainBlock.h	/^typedef int (*GapCost)(int dq, int dt, void *gapData);$/;"	t
GenBankHidden	hg/inc/taxonNode.h	/^    unsigned GenBankHidden;	\/* 1 if name is suppressed in GenBank entry lineage *\/$/;"	m	struct:taxonNode
GeneID	hg/inc/stsInfoMouseNew.h	/^    char *GeneID;	\/* Associated gene Id *\/$/;"	m	struct:stsInfoMouseNew
GeneID	hg/inc/stsInfoRat.h	/^    char *GeneID;	\/* Associated gene Id *\/$/;"	m	struct:stsInfoRat
GeneName	hg/inc/stsInfoMouseNew.h	/^    char *GeneName;	\/* Associated gene name *\/$/;"	m	struct:stsInfoMouseNew
GeneName	hg/inc/stsInfoRat.h	/^    char *GeneName;	\/* Associated gene name *\/$/;"	m	struct:stsInfoRat
GffExon	inc/oldGff.h	/^typedef struct gffSegment GffExon;$/;"	t	typeref:struct:gffSegment
GffIntron	inc/oldGff.h	/^typedef struct gffSegment GffIntron;$/;"	t	typeref:struct:gffSegment
GgTransOut	hg/inc/geneGraph.h	/^typedef void (*GgTransOut)(struct ggAliInfo *da, int cStart, int cEnd); $/;"	t
HACTREE_H	inc/hacTree.h	42;"	d
HAPMAPALLELEFREQ_H	hg/inc/hapmapAlleleFreq.h	6;"	d
HAPMAPALLELEFREQ_NUM_COLS	hg/inc/hapmapAlleleFreq.h	8;"	d
HAPMAPALLELESCOMBINED_H	hg/inc/hapmapAllelesCombined.h	6;"	d
HAPMAPALLELESCOMBINED_NUM_COLS	hg/inc/hapmapAllelesCombined.h	8;"	d
HAPMAPALLELESORTHO_H	hg/inc/hapmapAllelesOrtho.h	6;"	d
HAPMAPALLELESORTHO_NUM_COLS	hg/inc/hapmapAllelesOrtho.h	8;"	d
HAPMAPALLELESSUMMARY_H	hg/inc/hapmapAllelesSummary.h	6;"	d
HAPMAPALLELESSUMMARY_NUM_COLS	hg/inc/hapmapAllelesSummary.h	8;"	d
HAPMAPALLELES_H	hg/inc/hapmapAlleles.h	6;"	d
HAPMAPALLELES_NUM_COLS	hg/inc/hapmapAlleles.h	8;"	d
HAPMAPLD_H	hg/inc/hapmapLd.h	6;"	d
HAPMAPLD_NUM_COLS	hg/inc/hapmapLd.h	12;"	d
HAPMAPPHASEIIISUMMARY_H	hg/inc/hapmapPhaseIIISummary.h	6;"	d
HAPMAPPHASEIIISUMMARY_NUM_COLS	hg/inc/hapmapPhaseIIISummary.h	8;"	d
HAPMAPPRIMATEALLELES_H	hg/inc/hapmapPrimateAlleles.h	6;"	d
HAPMAPPRIMATEALLELES_NUM_COLS	hg/inc/hapmapPrimateAlleles.h	12;"	d
HAPMAPSNPSCOMBINED_H	hg/inc/hapmapSnpsCombined.h	6;"	d
HAPMAPSNPSCOMBINED_NUM_COLS	hg/inc/hapmapSnpsCombined.h	8;"	d
HAPMAPSNPS_H	hg/inc/hapmapSnps.h	6;"	d
HAPMAPSNPS_NUM_COLS	hg/inc/hapmapSnps.h	8;"	d
HAP_FILTER_DEFAULT	hg/inc/hapmapSnps.h	84;"	d
HAP_MAX_EXPECTED_HET	hg/inc/hapmapSnps.h	79;"	d
HAP_MAX_EXPECTED_HET_DEFAULT	hg/inc/hapmapSnps.h	89;"	d
HAP_MAX_FREQ	hg/inc/hapmapSnps.h	76;"	d
HAP_MAX_FREQ_DEFAULT	hg/inc/hapmapSnps.h	87;"	d
HAP_MAX_OBSERVED_HET	hg/inc/hapmapSnps.h	78;"	d
HAP_MAX_OBSERVED_HET_DEFAULT	hg/inc/hapmapSnps.h	90;"	d
HAP_MIN_FREQ	hg/inc/hapmapSnps.h	75;"	d
HAP_MIN_FREQ_DEFAULT	hg/inc/hapmapSnps.h	86;"	d
HAP_MIN_HET	hg/inc/hapmapSnps.h	77;"	d
HAP_MIN_HET_DEFAULT	hg/inc/hapmapSnps.h	88;"	d
HAP_MONO_PREFIX	hg/inc/hapmapSnps.h	80;"	d
HAP_ORTHO_COUNT	hg/inc/hapmapSnps.h	96;"	d
HAP_ORTHO_PREFIX	hg/inc/hapmapSnps.h	81;"	d
HAP_ORTHO_QUAL_DEFAULT	hg/inc/hapmapSnps.h	92;"	d
HAP_ORTHO_QUAL_PREFIX	hg/inc/hapmapSnps.h	82;"	d
HAP_PHASEIII_POPCOUNT	hg/inc/hapmapSnps.h	95;"	d
HAP_PHASEII_POPCOUNT	hg/inc/hapmapSnps.h	94;"	d
HAP_POP_COUNT	hg/inc/hapmapSnps.h	73;"	d
HAP_POP_MIXED	hg/inc/hapmapSnps.h	72;"	d
HAP_TYPE	hg/inc/hapmapSnps.h	74;"	d
HASH_H	inc/hash.h	54;"	d
HA_CHIMP	hg/inc/hapmapAlleles.h	80;"	d
HA_CHIMP_DEFAULT	hg/inc/hapmapAlleles.h	96;"	d
HA_CHIMP_QUAL	hg/inc/hapmapAlleles.h	81;"	d
HA_CHIMP_QUAL_DEFAULT	hg/inc/hapmapAlleles.h	97;"	d
HA_MACAQUE	hg/inc/hapmapAlleles.h	82;"	d
HA_MACAQUE_DEFAULT	hg/inc/hapmapAlleles.h	98;"	d
HA_MACAQUE_QUAL	hg/inc/hapmapAlleles.h	83;"	d
HA_MACAQUE_QUAL_DEFAULT	hg/inc/hapmapAlleles.h	99;"	d
HA_MAX_FREQ	hg/inc/hapmapAlleles.h	76;"	d
HA_MAX_FREQ_DEFAULT	hg/inc/hapmapAlleles.h	90;"	d
HA_MAX_HET	hg/inc/hapmapAlleles.h	78;"	d
HA_MAX_HET_DEFAULT	hg/inc/hapmapAlleles.h	92;"	d
HA_MIN_FREQ	hg/inc/hapmapAlleles.h	75;"	d
HA_MIN_FREQ_DEFAULT	hg/inc/hapmapAlleles.h	89;"	d
HA_MIN_HET	hg/inc/hapmapAlleles.h	77;"	d
HA_MIN_HET_DEFAULT	hg/inc/hapmapAlleles.h	91;"	d
HA_MONO	hg/inc/hapmapAlleles.h	79;"	d
HA_MONO_DEFAULT	hg/inc/hapmapAlleles.h	94;"	d
HA_POP_COUNT	hg/inc/hapmapAlleles.h	73;"	d
HA_POP_COUNT_DEFAULT	hg/inc/hapmapAlleles.h	86;"	d
HA_POP_MIXED	hg/inc/hapmapAlleles.h	72;"	d
HA_POP_MIXED_DEFAULT	hg/inc/hapmapAlleles.h	85;"	d
HA_TYPE	hg/inc/hapmapAlleles.h	74;"	d
HA_TYPE_DEFAULT	hg/inc/hapmapAlleles.h	87;"	d
HCOMMON_H	hg/inc/hCommon.h	4;"	d
HCYTOBAND_H	hg/inc/hCytoBand.h	5;"	d
HDB_H	hg/inc/hdb.h	4;"	d
HDB_MAX_BAND_STRING	hg/inc/hdb.h	44;"	d
HDB_MAX_CHROM_STRING	hg/inc/hdb.h	43;"	d
HDB_MAX_FIELD_STRING	hg/inc/hdb.h	45;"	d
HDB_MAX_PATH_STRING	hg/inc/hdb.h	47;"	d
HDB_MAX_SEQS_FOR_SPLIT	hg/inc/hdb.h	40;"	d
HDB_MAX_TABLE_STRING	hg/inc/hdb.h	46;"	d
HEIGHTPER	hg/inc/wiggle.h	265;"	d
HELP_DIR	hg/inc/hui.h	29;"	d
HGAP_H	inc/hgap.h	8;"	d
HGBAM_H	hg/inc/hgBam.h	5;"	d
HGCOLORS_H	hg/inc/hgColors.h	4;"	d
HGCONFIG_H	hg/inc/hgConfig.h	2;"	d
HGDB_H	hg/inc/hgdb.h	8;"	d
HGDB_H	inc/hgdb.h	8;"	d
HGDPGEO_H	hg/inc/hgdpGeo.h	6;"	d
HGDPGEO_NUM_COLS	hg/inc/hgdpGeo.h	8;"	d
HGDPGEO_POP_COUNT	hg/inc/hgdpGeo.h	9;"	d
HGEXP_H	hg/inc/hgExp.h	4;"	d
HGFINDSPEC_H	hg/inc/hgFindSpec.h	6;"	d
HGFINDSPEC_NUM_COLS	hg/inc/hgFindSpec.h	8;"	d
HGFIND_H	hg/inc/hgFind.h	4;"	d
HGFIND_MAX_CMDWORDS	hg/lib/hgFind.c	168;"	d	file:
HGFIND_MAX_KEYWORDS	hg/lib/hgFind.c	167;"	d	file:
HGID	hg/inc/hgRelate.h	/^typedef unsigned int HGID;	\/* A database ID. *\/$/;"	t
HGID	inc/hgap.h	/^typedef unsigned int HGID;	\/* A database ID. *\/$/;"	t
HGMAF_H	hg/inc/hgMaf.h	4;"	d
HGNC_H	hg/inc/hgnc.h	6;"	d
HGNC_NUM_COLS	hg/inc/hgnc.h	8;"	d
HGPOSRANGESIZE	hg/lib/hgFind.c	126;"	d	file:
HGRELATE_H	hg/inc/hgRelate.h	8;"	d
HGSEQ_H	hg/inc/hgSeq.h	4;"	d
HG_CL_INSIDE	hg/inc/hgColors.h	15;"	d
HG_CL_OUTSIDE	hg/inc/hgColors.h	13;"	d
HG_COL_BORDER	hg/inc/hgColors.h	16;"	d
HG_COL_HEADER	hg/inc/hgColors.h	11;"	d
HG_COL_HOTLINKS	hg/inc/hgColors.h	10;"	d
HG_COL_INSIDE	hg/inc/hgColors.h	14;"	d
HG_COL_LOCAL_TABLE	hg/inc/hgColors.h	18;"	d
HG_COL_OUTSIDE	hg/inc/hgColors.h	12;"	d
HG_COL_TABLE	hg/inc/hgColors.h	17;"	d
HG_COL_TABLE_LABEL	hg/inc/hgColors.h	19;"	d
HG_CONF_SANDBOX_MDB	hg/lib/mdb.c	925;"	d	file:
HG_CONF_SANDBOX_TDB	hg/lib/mdb.c	926;"	d	file:
HIDE_NONCODING_DEFAULT	hg/inc/hui.h	676;"	d
HIDE_NONCODING_SUFFIX	hg/inc/hui.h	675;"	d
HINV_H	hg/inc/HInv.h	6;"	d
HINV_NUM_COLS	hg/inc/HInv.h	8;"	d
HISTOGRAM_H	inc/histogram.h	4;"	d
HInv	hg/inc/HInv.h	/^struct HInv$/;"	s
HInvCommaIn	hg/lib/HInv.c	/^struct HInv *HInvCommaIn(char **pS, struct HInv *ret)$/;"	f
HInvCommaOut	hg/inc/HInv.h	57;"	d
HInvFree	hg/lib/HInv.c	/^void HInvFree(struct HInv **pEl)$/;"	f
HInvFreeList	hg/lib/HInv.c	/^void HInvFreeList(struct HInv **pList)$/;"	f
HInvLoad	hg/lib/HInv.c	/^struct HInv *HInvLoad(char **row)$/;"	f
HInvLoadAll	hg/lib/HInv.c	/^struct HInv *HInvLoadAll(char *fileName) $/;"	f
HInvLoadAllByChar	hg/lib/HInv.c	/^struct HInv *HInvLoadAllByChar(char *fileName, char chopper) $/;"	f
HInvLoadAllByTab	hg/inc/HInv.h	35;"	d
HInvOutput	hg/lib/HInv.c	/^void HInvOutput(struct HInv *el, FILE *f, char sep, char lastSep) $/;"	f
HInvStaticLoad	hg/lib/HInv.c	/^void HInvStaticLoad(char **row, struct HInv *ret)$/;"	f
HInvTabOut	hg/inc/HInv.h	54;"	d
HMMPFAMPARSE_H	inc/hmmPfamParse.h	4;"	d
HMMSTATS_H	inc/hmmstats.h	9;"	d
HORIZGRID	hg/inc/wiggle.h	266;"	d
HOXD70_sym	lib/mafScore.c	/^static const int HOXD70_sym[4][4] = {$/;"	v	file:
HPRINT_H	hg/inc/hPrint.h	5;"	d
HTI_IS_WIGGLE	hg/inc/wiggle.h	161;"	d
HTMLPAGE_H	inc/htmlPage.h	14;"	d
HUBCONNECT_H	hg/inc/hubConnect.h	8;"	d
HUGE	inc/common.h	91;"	d
HUGE_LIMIT	hg/lib/wigDataStream.c	16;"	d	file:
HUI_H	hg/inc/hui.h	4;"	d
HUMANPARALOG_H	hg/inc/humanParalog.h	6;"	d
H_A_A	lib/oligoTm.c	96;"	d	file:
H_A_C	lib/oligoTm.c	97;"	d	file:
H_A_G	lib/oligoTm.c	98;"	d	file:
H_A_N	lib/oligoTm.c	100;"	d	file:
H_A_T	lib/oligoTm.c	99;"	d	file:
H_C_A	lib/oligoTm.c	102;"	d	file:
H_C_C	lib/oligoTm.c	103;"	d	file:
H_C_G	lib/oligoTm.c	104;"	d	file:
H_C_N	lib/oligoTm.c	106;"	d	file:
H_C_T	lib/oligoTm.c	105;"	d	file:
H_G_A	lib/oligoTm.c	108;"	d	file:
H_G_C	lib/oligoTm.c	109;"	d	file:
H_G_G	lib/oligoTm.c	110;"	d	file:
H_G_N	lib/oligoTm.c	112;"	d	file:
H_G_T	lib/oligoTm.c	111;"	d	file:
H_N_A	lib/oligoTm.c	120;"	d	file:
H_N_C	lib/oligoTm.c	121;"	d	file:
H_N_G	lib/oligoTm.c	122;"	d	file:
H_N_N	lib/oligoTm.c	124;"	d	file:
H_N_T	lib/oligoTm.c	123;"	d	file:
H_T_A	lib/oligoTm.c	114;"	d	file:
H_T_C	lib/oligoTm.c	115;"	d	file:
H_T_G	lib/oligoTm.c	116;"	d	file:
H_T_N	lib/oligoTm.c	118;"	d	file:
H_T_T	lib/oligoTm.c	117;"	d	file:
Her2CommunityMethod	hg/inc/ispyTables.h	/^    char *Her2CommunityMethod;	\/* Her2 Summary method as measured in the Community *\/$/;"	m	struct:onStudy
Her2CommunityPos	hg/inc/ispyTables.h	/^    char *Her2CommunityPos;	\/* Her2 Summary as measured in the Community *\/$/;"	m	struct:onStudy
Herceptin	hg/inc/ispyTables.h	/^    char *Herceptin;	\/* Herceptin received *\/$/;"	m	struct:chemo
HistTypeInvOS	hg/inc/ispyTables.h	/^    char *HistTypeInvOS;	\/* Histologic Type of Invasive Tumor (On-Study) *\/$/;"	m	struct:onStudy
HistologicGradeOS	hg/inc/ispyTables.h	/^    char *HistologicGradeOS;	\/* Combined Histologic Grade - On-study (According to SBR\/Elston Classification) *\/$/;"	m	struct:onStudy
HistologicGradePS	hg/inc/ispyTables.h	/^    int *HistologicGradePS;	\/* Combined Histologic Grade -Post-Surgery (According to SBR\/Elston Classification) *\/$/;"	m	struct:postSurgery
HistologicTypePS	hg/inc/ispyTables.h	/^    char *HistologicTypePS;	\/* Histologic Type of Primary Tumor (Post-Surgery) *\/$/;"	m	struct:postSurgery
IHC_NUM_COLS	hg/inc/ispyTables.h	845;"	d
IMAGECLONE_H	hg/inc/imageClone.h	6;"	d
IMGORD_SUFFIX	hg/lib/cart.c	309;"	d	file:
INDEL_DOUBLE_INSERT	hg/inc/hui.h	681;"	d
INDEL_HELP_PAGE	hg/inc/hui.h	685;"	d
INDEL_POLY_A	hg/inc/hui.h	683;"	d
INDEL_QUERY_INSERT	hg/inc/hui.h	682;"	d
INDEPENDENT_NODE	hg/inc/trackDb.h	97;"	d
INFINITY	inc/common.h	1352;"	d
INLINE	inc/common.h	137;"	d
INTVALTREE_H	inc/intValTree.h	5;"	d
ISOCHORES_H	hg/inc/isochores.h	6;"	d
ISPYTABLES_H	hg/inc/ispyTables.h	6;"	d
IS_CART_VAR_EMPTY	hg/inc/cart.h	19;"	d
IS_FALSE	inc/common.h	1411;"	d
IS_KNOWN	inc/common.h	1409;"	d
IS_NO	inc/common.h	1408;"	d
IS_TRUE	inc/common.h	1410;"	d
IS_YES	inc/common.h	1407;"	d
ITEMATTR_H	hg/inc/itemAttr.h	6;"	d
ITEMATTR_NUM_COLS	hg/inc/itemAttr.h	8;"	d
ITEMCONF_H	hg/inc/itemConf.h	6;"	d
ITEMCONF_NUM_COLS	hg/inc/itemConf.h	8;"	d
ITEMDETAILSHTML_H	hg/inc/itemDetailsHtml.h	6;"	d
ITEMDETAILSHTML_NUM_COLS	hg/inc/itemDetailsHtml.h	8;"	d
ITEM_BIG_IMAGE_PATH	hg/inc/hui.h	137;"	d
ITEM_FIRST_CHAR_CASE	hg/inc/hgMaf.h	26;"	d
ITEM_IMAGE_PATH	hg/inc/hui.h	136;"	d
ITEM_NOT_CLASSIFIED	hg/inc/wikiTrack.h	140;"	d
ITLV_BIT	lib/gifcodes.h	30;"	d
ITSA_A	inc/itsa.h	76;"	d
ITSA_C	inc/itsa.h	77;"	d
ITSA_G	inc/itsa.h	78;"	d
ITSA_H	inc/itsa.h	9;"	d
ITSA_MAGIC	inc/itsa.h	68;"	d
ITSA_MAJOR_VERSION	inc/itsa.h	69;"	d
ITSA_MINOR_VERSION	inc/itsa.h	70;"	d
ITSA_T	inc/itsa.h	79;"	d
IUPAC_H	inc/iupac.h	4;"	d
Ihc_T1	hg/inc/ispyTables.h	/^    char *Ihc_T1;	\/* IHC at T1 *\/$/;"	m	struct:ihc
Ihc_T2	hg/inc/ispyTables.h	/^    char *Ihc_T2;	\/* IHC at T2 *\/$/;"	m	struct:ihc
Ihc_T3	hg/inc/ispyTables.h	/^    char *Ihc_T3;	\/* IHC at T3 *\/$/;"	m	struct:ihc
Ihc_T4	hg/inc/ispyTables.h	/^    char *Ihc_T4;	\/* IHC at T4 *\/$/;"	m	struct:ihc
InitLump_FupMast	hg/inc/ispyTables.h	/^    char *InitLump_FupMast;	\/* Initial Lumpectomy Surgery followed by Mastectomy Surgery at a later date *\/$/;"	m	struct:postSurgery
Inst_ID	hg/inc/ispyTables.h	/^    char *Inst_ID;	\/* Registering Institution *\/$/;"	m	struct:patient
Inst_ID	hg/inc/ispyTables.h	/^    char *Inst_ID;	\/* Registering Institution *\/$/;"	m	struct:patientInfo
JAXORTHOLOG_H	hg/inc/jaxOrtholog.h	6;"	d
JAXQTL2_H	hg/inc/jaxQTL2.h	6;"	d
JAXQTL3_H	hg/inc/jaxQTL3.h	6;"	d
JAXQTL3_NUM_COLS	hg/inc/jaxQTL3.h	8;"	d
JAXQTL_H	hg/inc/jaxQTL.h	6;"	d
JBUFSIZE	hg/lib/hui.c	45;"	d	file:
JGIGENE_H	hg/inc/jgiGene.h	6;"	d
JGIGENE_NUM_COLS	hg/inc/jgiGene.h	8;"	d
JGITarget	hg/inc/rnaHybridization.h	/^    char *JGITarget;	\/*  *\/$/;"	m	struct:rnaHybridization
JKSQL_H	hg/inc/dnaMotifSql.h	7;"	d
JKSQL_H	hg/inc/jksql.h	21;"	d
JKSQL_PROF	hg/inc/jksql.h	398;"	d
JKSQL_TRACE	hg/inc/jksql.h	397;"	d
JOINER_H	hg/inc/joiner.h	14;"	d
JOINTALIGN_H	inc/jointalign.h	9;"	d
JOIN_PREFIX	hg/lib/genbank.c	/^static char *JOIN_PREFIX = "join(";$/;"	v	file:
JSHELPER_H	hg/inc/jsHelper.h	15;"	d
JS_CLEAR_ALL_BUTTON_LABEL	hg/inc/jsHelper.h	20;"	d
JS_DEFAULTS_BUTTON_LABEL	hg/inc/jsHelper.h	22;"	d
JS_SET_ALL_BUTTON_LABEL	hg/inc/jsHelper.h	21;"	d
KEYS_H	inc/keys.h	9;"	d
KG1TOKG2_H	hg/inc/kg1ToKg2.h	6;"	d
KG1TOKG2_NUM_COLS	hg/inc/kg1ToKg2.h	8;"	d
KGALIAS_H	hg/inc/kgAlias.h	6;"	d
KGALIAS_NUM_COLS	hg/inc/kgAlias.h	8;"	d
KGCOLOR_H	hg/inc/kgColor.h	6;"	d
KGCOLOR_NUM_COLS	hg/inc/kgColor.h	8;"	d
KGMAPNAME_H	hg/inc/kgMapName.h	6;"	d
KGMAPNAME_NUM_COLS	hg/inc/kgMapName.h	8;"	d
KGPROTALIAS_H	hg/inc/kgProtAlias.h	6;"	d
KGPROTALIAS_NUM_COLS	hg/inc/kgProtAlias.h	8;"	d
KGXREF_H	hg/inc/kgXref.h	6;"	d
KGXREF_NUM_COLS	hg/inc/kgXref.h	8;"	d
KNETUDC_H	inc/knetUdc.h	5;"	d
KNOWNINFO_H	hg/inc/knownInfo.h	6;"	d
KNOWNMORE_H	hg/inc/knownMore.h	6;"	d
KNOWNTOSUPER_H	hg/inc/knownToSuper.h	6;"	d
KNOWNTOSUPER_NUM_COLS	hg/inc/knownToSuper.h	8;"	d
KXTOK_H	inc/kxTok.h	9;"	d
LABTRACK_NUM_COLS	hg/inc/ispyTables.h	1003;"	d
LANDMARKATTRLINK_NUM_COLS	hg/inc/landmark.h	171;"	d
LANDMARKATTR_NUM_COLS	hg/inc/landmark.h	93;"	d
LANDMARKUI_H	hg/inc/landmarkUi.h	3;"	d
LANDMARK_H	hg/inc/landmark.h	6;"	d
LANDMARK_NUM_COLS	hg/inc/landmark.h	12;"	d
LARGEST_CODE	lib/gifcomp.c	63;"	d	file:
LARGE_COMPOSITE_CUTOFF	hg/lib/hui.c	3856;"	d	file:
LD2_H	hg/inc/ld2.h	6;"	d
LD2_NUM_COLS	hg/inc/ld2.h	8;"	d
LDUI_H	hg/inc/ldUi.h	3;"	d
LD_H	hg/inc/ld.h	6;"	d
LD_NUM_COLS	hg/inc/ld.h	12;"	d
LD_T1	hg/inc/ispyTables.h	/^    int *LD_T1;	\/* Longest Diameter (LD) in the cancer mass at T1 Pre-Treatment - Baseline. *\/$/;"	m	struct:mr
LD_T1_T2_PERCT	hg/inc/ispyTables.h	/^    float *LD_T1_T2_PERCT;	\/* The percentage of Longest Dimension (LD) change between T1 and T2 *\/$/;"	m	struct:mr
LD_T1_T3_PERCT	hg/inc/ispyTables.h	/^    float *LD_T1_T3_PERCT;	\/* The percentage of Longest Dimension (LD) change between T1 and T3 *\/$/;"	m	struct:mr
LD_T1_T4_PERCT	hg/inc/ispyTables.h	/^    float *LD_T1_T4_PERCT;	\/* The percentage of Longest Dimension (LD) change between T1 and T4 *\/$/;"	m	struct:mr
LD_T2	hg/inc/ispyTables.h	/^    int *LD_T2;	\/* Longest Diameter (LD) in the cancer mass at the T2 Early Treatment timepoint. *\/$/;"	m	struct:mr
LD_T2_T3_PERCT	hg/inc/ispyTables.h	/^    float *LD_T2_T3_PERCT;	\/* The percentage of Longest Dimension (LD) change between T2 and T3 *\/$/;"	m	struct:mr
LD_T2_T4_PERCT	hg/inc/ispyTables.h	/^    float *LD_T2_T4_PERCT;	\/* The percentage of Longest Dimension (LD) change between T2 and T4 *\/$/;"	m	struct:mr
LD_T3	hg/inc/ispyTables.h	/^    int *LD_T3;	\/* Longest Diameter (LD) in the cancer mass at the T3 Between Treatment Regimes timepoint. *\/$/;"	m	struct:mr
LD_T3_T4_PERCT	hg/inc/ispyTables.h	/^    float *LD_T3_T4_PERCT;	\/* The percentage of Longest Dimension (LD) change between T3 and T4 *\/$/;"	m	struct:mr
LD_T4	hg/inc/ispyTables.h	/^    int *LD_T4;	\/* Longest Diameter (LD) in the cancer mass at the T4 Pre-Surgery timepoint. *\/$/;"	m	struct:mr
LES_T1	hg/inc/ispyTables.h	/^    char *LES_T1;	\/* Lesion type at T1 Pre-Treatment - Baseline. *\/$/;"	m	struct:mr
LES_T2	hg/inc/ispyTables.h	/^    char *LES_T2;	\/* Lesion type at the T2 Early Treatment timepoint (as indicated on the M4 form). *\/$/;"	m	struct:mr
LES_T3	hg/inc/ispyTables.h	/^    char *LES_T3;	\/* Lesion type at the T3 Between Treatment Regimes timepoint (as indicated on the M4 form). *\/$/;"	m	struct:mr
LES_T4	hg/inc/ispyTables.h	/^    char *LES_T4;	\/* Lesion type at the T4 Pre-Surgery timepoint (as indicated on the M4 form). *\/$/;"	m	struct:mr
LFS_H	hg/inc/lfs.h	6;"	d
LIFTOVERCHAIN_H	hg/inc/liftOverChain.h	6;"	d
LIFTOVERCHAIN_NUM_COLS	hg/inc/liftOverChain.h	12;"	d
LIFTOVER_FILE_PREFIX	hg/lib/liftOver.c	1113;"	d	file:
LIFTOVER_H	hg/inc/liftOver.h	4;"	d
LIFTOVER_MAX_WORDS	hg/lib/liftOver.c	38;"	d	file:
LIFTOVER_MINBLOCKS	hg/inc/liftOver.h	7;"	d
LIFTOVER_MINMATCH	hg/inc/liftOver.h	6;"	d
LIFTUP_H	hg/inc/liftUp.h	2;"	d
LIMIT_2or6GB	inc/common.h	122;"	d
LIMIT_2or8GB	inc/common.h	120;"	d
LINEBAR	hg/inc/wiggle.h	272;"	d
LINEFILE_H	inc/linefile.h	8;"	d
LINEpercent	hg/inc/cnpSharp.h	/^    float LINEpercent;	\/* 0 to 1 *\/$/;"	m	struct:cnpSharp
LLAINFO_H	hg/inc/llaInfo.h	6;"	d
LLAINFO_NUM_COLS	hg/inc/llaInfo.h	12;"	d
LLid	hg/inc/mgiID.h	/^    char LLid[9];	\/* Locus Link ID *\/$/;"	m	struct:MGIid
LOGIN_EXPIRED	hg/inc/wikiTrack.h	149;"	d
LOG_H	inc/log.h	5;"	d
LOWELABARKINOPERONSCORE_H	hg/inc/lowelabArkinOperonScore.h	6;"	d
LOWELABARKINOPERONSCORE_NUM_COLS	hg/inc/lowelabArkinOperonScore.h	8;"	d
LOWELABPFAMHITS_NUM_COLS	hg/inc/lowelabPfamHit.h	8;"	d
LOWELABPFAMHITS_NUM_COLS	hg/lib/lowelabPfamHit.h	8;"	d
LOWELABPFAMHIT_H	hg/inc/lowelabPfamHit.h	6;"	d
LOWELABPFAMHIT_H	hg/lib/lowelabPfamHit.h	6;"	d
LOWELABTIGROPERONSCORE_H	hg/inc/lowelabTIGROperonScore.h	6;"	d
LOWELABTIGROPERONSCORE_NUM_COLS	hg/inc/lowelabTIGROperonScore.h	8;"	d
LOWEUTILS_H	hg/inc/loweutils.h	2;"	d
LSSNPPDB_H	hg/inc/lsSnpPdb.h	6;"	d
LSSNPPDB_NUM_COLS	hg/inc/lsSnpPdb.h	8;"	d
LTRpercent	hg/inc/cnpSharp.h	/^    float LTRpercent;	\/* 0 to 1 *\/$/;"	m	struct:cnpSharp
LocusLinkID	hg/inc/stsInfoMouse.h	/^    unsigned LocusLinkID;	\/* Locuslink Id, 0 if N\/A *\/$/;"	m	struct:stsInfoMouse
MADBREP_H	inc/maDbRep.h	7;"	d
MAFFRAMES_H	hg/inc/mafFrames.h	6;"	d
MAFFRAMES_NUM_COLS	hg/inc/mafFrames.h	8;"	d
MAFGENE_EXONS	hg/inc/mafGene.h	3;"	d
MAFGENE_NOTRANS	hg/inc/mafGene.h	4;"	d
MAFGENE_OUTBLANK	hg/inc/mafGene.h	5;"	d
MAFGENE_OUTTABLE	hg/inc/mafGene.h	6;"	d
MAFSUMMARY_H	hg/inc/mafSummary.h	6;"	d
MAFSUMMARY_NUM_COLS	hg/inc/mafSummary.h	12;"	d
MAF_CHAIN_VAR	hg/inc/hui.h	116;"	d
MAF_CONTIG_NESTED_STATUS	inc/maf.h	50;"	d
MAF_CONTIG_STATUS	inc/maf.h	49;"	d
MAF_DOT_VAR	hg/inc/hui.h	115;"	d
MAF_FRAMING_VAR	hg/inc/hui.h	114;"	d
MAF_GENEPRED_VAR	hg/inc/hui.h	113;"	d
MAF_H	inc/maf.h	3;"	d
MAF_INSERT_STATUS	inc/maf.h	48;"	d
MAF_INVERSE_STATUS	inc/maf.h	47;"	d
MAF_MAYBE_NEW_NESTED_STATUS	inc/maf.h	54;"	d
MAF_MAYBE_NEW_STATUS	inc/maf.h	53;"	d
MAF_MISSING_STATUS	inc/maf.h	55;"	d
MAF_NEW_NESTED_STATUS	inc/maf.h	52;"	d
MAF_NEW_STATUS	inc/maf.h	51;"	d
MAF_TANDEM_STATUS	inc/maf.h	56;"	d
MAKECOLOR_32	inc/memgfx.h	36;"	d
MAKECOLOR_32	inc/memgfx.h	50;"	d
MAKEITEMSITEM_H	hg/inc/makeItemsItem.h	6;"	d
MAKEITEMSITEM_NUM_COLS	hg/inc/makeItemsItem.h	10;"	d
MAKE_CFG_LINK	hg/lib/hui.c	6226;"	d	file:
MAKE_CFG_SUBTRACK_DIV	hg/lib/hui.c	4237;"	d	file:
MAKE_CFG_SUBTRACK_LINK	hg/lib/hui.c	4199;"	d	file:
MAMMALPSG_H	hg/inc/mammalPsg.h	6;"	d
MAMMALPSG_NUM_COLS	hg/inc/mammalPsg.h	8;"	d
MANY_SUBTRACKS	hg/lib/hui.c	4397;"	d	file:
MAPSTS_H	hg/inc/mapSts.h	6;"	d
MASKED_BASE_BIT	inc/dnautil.h	69;"	d
MATOFF_H	inc/maToFf.h	7;"	d
MATRIX_BOTTOM_BUTTONS_AFTER	hg/lib/hui.c	6387;"	d	file:
MATRIX_RIGHT_BUTTONS_AFTER	hg/lib/hui.c	6386;"	d	file:
MATRIX_SQUEEZE	hg/lib/hui.c	6414;"	d	file:
MAT_CB	hg/lib/hui.c	6905;"	d	file:
MAT_CB_SETUP	hg/lib/hui.c	6904;"	d	file:
MAXBOUNDARY	lib/mime.c	26;"	d	file:
MAXDATASIZE	lib/mime.c	25;"	d	file:
MAXHEIGHTPIXELS	hg/inc/wiggle.h	264;"	d
MAXPARTLINESIZE	lib/mime.c	24;"	d	file:
MAXPARTSIZE	lib/mime.c	23;"	d	file:
MAXSINGLEPIECESIZE	inc/genoFind.h	380;"	d
MAX_CHROM_SIZE	hg/lib/chromBins.c	/^static const int MAX_CHROM_SIZE = 1000000000;$/;"	v	file:
MAX_CODES	lib/gifdecomp.c	56;"	d	file:
MAX_COMPS	hg/lib/mafGene.c	52;"	d	file:
MAX_EXON_SIZE	hg/lib/mafGene.c	47;"	d	file:
MAX_GROUPS	hg/lib/hui.c	5647;"	d	file:
MAX_LIMIT	hg/inc/wiggle.h	263;"	d
MAX_OPT_STRLEN	hg/inc/chainCart.h	7;"	d
MAX_OPT_STRLEN	hg/inc/wiggle.h	90;"	d
MAX_SECTIONS	lib/jpegSize.c	28;"	d	file:
MAX_SKIP_TO_SAVE_RECONNECT	lib/udc.c	115;"	d	file:
MAX_SMOOTHING	hg/inc/wiggle.h	282;"	d
MAX_SPAN_COUNT	hg/inc/wiggle.h	281;"	d
MAX_SP_SIZE	hg/lib/hui.c	5646;"	d	file:
MAX_SP_SIZE	hg/lib/hui.c	5701;"	d	file:
MAX_SUBGROUP	hg/lib/hui.c	42;"	d	file:
MAX_TIME_OUT	lib/rudp.c	63;"	d	file:
MAX_WIG_VALUE	hg/inc/wiggle.h	89;"	d
MAX_Y	hg/inc/wiggle.h	261;"	d
MCNBREAKPOINTS_H	hg/inc/mcnBreakpoints.h	6;"	d
MD5_H	inc/md5.h	2;"	d
MDB_COMMON_VARS_OBJ_SEARCH_LIMIT	hg/lib/mdb.c	1920;"	d	file:
MDB_DEFAULT_NAME	hg/inc/mdb.h	94;"	d
MDB_H	hg/inc/mdb.h	6;"	d
MDB_MAGIC_PREFIX	hg/lib/mdb.c	865;"	d	file:
MDB_METADATA_KEY	hg/lib/mdb.c	232;"	d	file:
MDB_METAOBJ_RAKEY	hg/lib/mdb.c	233;"	d	file:
MDB_METAVAR_RAKEY	hg/lib/mdb.c	234;"	d	file:
MDB_NOT_FOUND	hg/lib/mdb.c	3117;"	d	file:
MDB_NUM_COLS	hg/inc/mdb.h	9;"	d
MDB_OBJ	hg/inc/mdb.h	97;"	d
MDB_OBJ_TYPE	hg/inc/mdb.h	102;"	d
MDB_OBJ_TYPE_COMPOSITE	hg/inc/mdb.h	105;"	d
MDB_OBJ_TYPE_FILE	hg/inc/mdb.h	104;"	d
MDB_OBJ_TYPE_TABLE	hg/inc/mdb.h	103;"	d
MDB_TEMPORARY_TAB_FILE	hg/lib/mdb.c	1139;"	d	file:
MDB_VAL	hg/inc/mdb.h	99;"	d
MDB_VAL_ENCODE_EDV_NONE	hg/inc/mdb.h	132;"	d
MDB_VAL_ENCODE_PROJECT	hg/inc/mdb.h	128;"	d
MDB_VAL_STD_TRUNCATION	hg/inc/mdb.h	487;"	d
MDB_VAR	hg/inc/mdb.h	98;"	d
MDB_VAR_ANTIBODY	hg/inc/mdb.h	111;"	d
MDB_VAR_CELL	hg/inc/mdb.h	112;"	d
MDB_VAR_COMPOSITE	hg/inc/mdb.h	110;"	d
MDB_VAR_CONTROL	hg/inc/mdb.h	115;"	d
MDB_VAR_DATATYPE	hg/inc/mdb.h	113;"	d
MDB_VAR_DCC_ACCESSION	hg/inc/mdb.h	120;"	d
MDB_VAR_ENCODE_EDVS	hg/inc/mdb.h	130;"	d
MDB_VAR_ENCODE_EXP_ID	hg/inc/mdb.h	131;"	d
MDB_VAR_ENCODE_SUBID	hg/inc/mdb.h	129;"	d
MDB_VAR_FILEINDEX	hg/inc/mdb.h	119;"	d
MDB_VAR_FILENAME	hg/inc/mdb.h	117;"	d
MDB_VAR_LAB	hg/inc/mdb.h	109;"	d
MDB_VAR_LAB_VERSION	hg/inc/mdb.h	123;"	d
MDB_VAR_MD5SUM	hg/inc/mdb.h	118;"	d
MDB_VAR_PI	hg/inc/mdb.h	108;"	d
MDB_VAR_PROJECT	hg/inc/mdb.h	121;"	d
MDB_VAR_REPLICATE	hg/inc/mdb.h	122;"	d
MDB_VAR_SOFTWARE_VERSION	hg/inc/mdb.h	124;"	d
MDB_VAR_SUBMIT_VERSION	hg/inc/mdb.h	125;"	d
MDB_VAR_TABLENAME	hg/inc/mdb.h	116;"	d
MDB_VAR_VIEW	hg/inc/mdb.h	114;"	d
MEGABLASTINFO_H	hg/inc/megablastInfo.h	6;"	d
MEGABLASTINFO_NUM_COLS	hg/inc/megablastInfo.h	8;"	d
MEMALLOC_H	inc/memalloc.h	8;"	d
MEMGFX_BIGENDIAN	inc/memgfx.h	25;"	d
MEMGFX_H	inc/memgfx.h	12;"	d
METACHROMGRAPH_H	hg/inc/metaChromGraph.h	6;"	d
METACHROMGRAPH_NUM_COLS	hg/inc/metaChromGraph.h	8;"	d
METADATA_NAME_PREFIX	hg/inc/search.h	19;"	d
METADATA_NOT_FOUND	hg/lib/mdb.c	3118;"	d	file:
METADATA_VALUE_PREFIX	hg/inc/search.h	20;"	d
METATBL_DEFAULT_NAME	hg/inc/metaTbl.h	92;"	d
METATBL_H	hg/inc/metaTbl.h	6;"	d
METATBL_NUM_COLS	hg/inc/metaTbl.h	9;"	d
METAWIG_H	inc/metaWig.h	4;"	d
MFIXED	lib/gemfont.h	50;"	d
MGIID_H	hg/inc/mgiID.h	6;"	d
MGIId	hg/inc/stsInfoMouseNew.h	/^    unsigned MGIId;	\/* Marker's MGI Id *\/$/;"	m	struct:stsInfoMouseNew
MGIMarkerID	hg/inc/stsInfoMouse.h	/^    unsigned MGIMarkerID;	\/* sts Marker's MGI ID or 0 if N\/A *\/$/;"	m	struct:stsInfoMouse
MGIName	hg/inc/stsInfoMouseNew.h	/^    char *MGIName;	\/* Marker's MGI name *\/$/;"	m	struct:stsInfoMouseNew
MGIPrimerID	hg/inc/stsInfoMouse.h	/^    unsigned MGIPrimerID;	\/* sts Primer's MGI ID or 0 if N\/A *\/$/;"	m	struct:stsInfoMouse
MGIid	hg/inc/mgiID.h	/^    char MGIid[13];	\/* MGI ID *\/$/;"	m	struct:MGIid
MGIid	hg/inc/mgiID.h	/^struct MGIid$/;"	s
MGIidCommaIn	hg/lib/mgiID.c	/^struct MGIid *MGIidCommaIn(char **pS, struct MGIid *ret)$/;"	f
MGIidCommaOut	hg/inc/mgiID.h	52;"	d
MGIidFree	hg/lib/mgiID.c	/^void MGIidFree(struct MGIid **pEl)$/;"	f
MGIidFreeList	hg/lib/mgiID.c	/^void MGIidFreeList(struct MGIid **pList)$/;"	f
MGIidLoad	hg/lib/mgiID.c	/^struct MGIid *MGIidLoad(char **row)$/;"	f
MGIidLoadAll	hg/lib/mgiID.c	/^struct MGIid *MGIidLoadAll(char *fileName) $/;"	f
MGIidLoadWhere	hg/lib/mgiID.c	/^struct MGIid *MGIidLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
MGIidOutput	hg/lib/mgiID.c	/^void MGIidOutput(struct MGIid *el, FILE *f, char sep, char lastSep) $/;"	f
MGIidStaticLoad	hg/lib/mgiID.c	/^void MGIidStaticLoad(char **row, struct MGIid *ret)$/;"	f
MGIidTabOut	hg/inc/mgiID.h	49;"	d
MG_BLACK	inc/memgfx.h	27;"	d
MG_BLACK	inc/memgfx.h	41;"	d
MG_BLACK	inc/memgfx.h	57;"	d
MG_BLUE	inc/memgfx.h	30;"	d
MG_BLUE	inc/memgfx.h	44;"	d
MG_BLUE	inc/memgfx.h	60;"	d
MG_CYAN	inc/memgfx.h	31;"	d
MG_CYAN	inc/memgfx.h	45;"	d
MG_CYAN	inc/memgfx.h	61;"	d
MG_FREE_COLORS_START	inc/memgfx.h	65;"	d
MG_GRAY	inc/memgfx.h	34;"	d
MG_GRAY	inc/memgfx.h	48;"	d
MG_GRAY	inc/memgfx.h	64;"	d
MG_GREEN	inc/memgfx.h	29;"	d
MG_GREEN	inc/memgfx.h	43;"	d
MG_GREEN	inc/memgfx.h	59;"	d
MG_MAGENTA	inc/memgfx.h	32;"	d
MG_MAGENTA	inc/memgfx.h	46;"	d
MG_MAGENTA	inc/memgfx.h	62;"	d
MG_RED	inc/memgfx.h	28;"	d
MG_RED	inc/memgfx.h	42;"	d
MG_RED	inc/memgfx.h	58;"	d
MG_WHITE	inc/memgfx.h	26;"	d
MG_WHITE	inc/memgfx.h	40;"	d
MG_WHITE	inc/memgfx.h	56;"	d
MG_WRITE_MODE_MULTIPLY	inc/memgfx.h	70;"	d
MG_WRITE_MODE_NORMAL	inc/memgfx.h	69;"	d
MG_YELLOW	inc/memgfx.h	33;"	d
MG_YELLOW	inc/memgfx.h	47;"	d
MG_YELLOW	inc/memgfx.h	63;"	d
MICROARRAY_CLICK_LIMIT	hg/inc/hui.h	133;"	d
MICROARRAY_H	hg/inc/microarray.h	5;"	d
MICROARRAY_MISSING_DATA	hg/inc/microarray.h	27;"	d
MIMEBUFSIZE	inc/mime.h	11;"	d
MIMEBUFSIZE	lib/htmlPage.c	1177;"	d	file:
MINCHROMSIZE_H	hg/inc/minChromSize.h	7;"	d
MINGENEINFO_H	hg/inc/minGeneInfo.h	6;"	d
MINGENEINFO_NUM_COLS	hg/inc/minGeneInfo.h	8;"	d
MINUS_BUTTON	hg/lib/hui.c	53;"	d	file:
MINUS_BUTTON	hg/lib/hui.c	59;"	d	file:
MIN_GRAY_LEVEL	hg/inc/hui.h	1005;"	d
MIN_HEIGHT_PER	hg/inc/wiggle.h	87;"	d
MIN_LIMIT	hg/inc/wiggle.h	262;"	d
MIN_Y	hg/inc/wiggle.h	260;"	d
MOTIF_COMPLEMENT	hg/inc/hui.h	100;"	d
MOUSEORTHO_H	hg/inc/mouseOrtho.h	6;"	d
MOUSESYNWHD_H	hg/inc/mouseSynWhd.h	6;"	d
MOUSESYN_H	hg/inc/mouseSyn.h	6;"	d
MPROP	lib/gemfont.h	51;"	d
MRNAMISMATCH_H	hg/inc/mrnaMisMatch.h	6;"	d
MRNAMISMATCH_NUM_COLS	hg/inc/mrnaMisMatch.h	8;"	d
MR_NUM_COLS	hg/inc/ispyTables.h	593;"	d
MULTI_TRACK_CHILD_MASK	hg/inc/trackDb.h	82;"	d
MULTI_TRACK_CHILD_NODE	hg/inc/trackDb.h	95;"	d
MULTI_TRACK_MASK	hg/inc/trackDb.h	78;"	d
MULTI_TRACK_NODE	hg/inc/trackDb.h	90;"	d
MYSQLTABLESTATUS_H	hg/inc/mysqlTableStatus.h	6;"	d
MYSQLTABLESTATUS_NUM_COLS	hg/inc/mysqlTableStatus.h	8;"	d
M_EOI	lib/jpegSize.c	23;"	d	file:
M_EXIF	lib/jpegSize.c	26;"	d	file:
M_JFIF	lib/jpegSize.c	25;"	d	file:
M_SOF0	lib/jpegSize.c	8;"	d	file:
M_SOF1	lib/jpegSize.c	9;"	d	file:
M_SOF10	lib/jpegSize.c	16;"	d	file:
M_SOF11	lib/jpegSize.c	17;"	d	file:
M_SOF13	lib/jpegSize.c	18;"	d	file:
M_SOF14	lib/jpegSize.c	19;"	d	file:
M_SOF15	lib/jpegSize.c	20;"	d	file:
M_SOF2	lib/jpegSize.c	10;"	d	file:
M_SOF3	lib/jpegSize.c	11;"	d	file:
M_SOF5	lib/jpegSize.c	12;"	d	file:
M_SOF6	lib/jpegSize.c	13;"	d	file:
M_SOF7	lib/jpegSize.c	14;"	d	file:
M_SOF9	lib/jpegSize.c	15;"	d	file:
M_SOI	lib/jpegSize.c	22;"	d	file:
M_SOS	lib/jpegSize.c	24;"	d	file:
MenoStatus	hg/inc/ispyTables.h	/^    char *MenoStatus;	\/* Menopausal Status *\/$/;"	m	struct:onStudy
MgFont	inc/memgfx.h	/^typedef struct font_hdr MgFont;$/;"	t	typeref:struct:font_hdr
Mri_Pattern_Code	hg/inc/ispyTables.h	/^    char *Mri_Pattern_Code;	\/* MRI Pattern Code *\/$/;"	m	struct:mr
Mri_Pattern_Desc	hg/inc/ispyTables.h	/^    char *Mri_Pattern_Desc;	\/* MRI Pattern Description *\/$/;"	m	struct:mr
MrnaIDforGeneName	hg/lib/hgFind.c	/^static char *MrnaIDforGeneName(char *db, char *geneName)$/;"	f	file:
MrnaIDforProtein	hg/lib/hgFind.c	/^char *MrnaIDforProtein(char *db, char *proteinID)$/;"	f
NA04477	hg/inc/affy120KDetails.h	/^    char NA04477[3];	\/* Individual 01 *\/$/;"	m	struct:affy120KDetails
NA04477	hg/inc/affyGenoDetails.h	/^    char NA04477[3];	\/* Individual 01 *\/$/;"	m	struct:affyGenoDetails
NA04479	hg/inc/affy120KDetails.h	/^    char NA04479[3];	\/* Individual 02 *\/$/;"	m	struct:affy120KDetails
NA04479	hg/inc/affyGenoDetails.h	/^    char NA04479[3];	\/* Individual 02 *\/$/;"	m	struct:affyGenoDetails
NA04846	hg/inc/affy120KDetails.h	/^    char NA04846[3];	\/* Individual 03 *\/$/;"	m	struct:affy120KDetails
NA04846	hg/inc/affyGenoDetails.h	/^    char NA04846[3];	\/* Individual 03 *\/$/;"	m	struct:affyGenoDetails
NA06985	hg/inc/genotype.h	/^    char NA06985[3];	\/*  NA06985	# CC *\/$/;"	m	struct:genotype
NA06991	hg/inc/genotype.h	/^    char NA06991[3];	\/*  NA06991	# CC *\/$/;"	m	struct:genotype
NA06993	hg/inc/genotype.h	/^    char NA06993[3];	\/*  NA06993	# CC *\/$/;"	m	struct:genotype
NA06993_dup	hg/inc/genotype.h	/^    char NA06993_dup[3];	\/*  NA06993.dup	# CC *\/$/;"	m	struct:genotype
NA06994	hg/inc/genotype.h	/^    char NA06994[3];	\/*  NA06994	# CC *\/$/;"	m	struct:genotype
NA07000	hg/inc/genotype.h	/^    char NA07000[3];	\/*  NA07000	# CC *\/$/;"	m	struct:genotype
NA07019	hg/inc/genotype.h	/^    char NA07019[3];	\/*  NA07019	# CC *\/$/;"	m	struct:genotype
NA07022	hg/inc/genotype.h	/^    char NA07022[3];	\/*  NA07022	# CC *\/$/;"	m	struct:genotype
NA07029	hg/inc/genotype.h	/^    char NA07029[3];	\/*  NA07029	# CC *\/$/;"	m	struct:genotype
NA07034	hg/inc/genotype.h	/^    char NA07034[3];	\/*  NA07034	# CC *\/$/;"	m	struct:genotype
NA07048	hg/inc/genotype.h	/^    char NA07048[3];	\/*  NA07048	# CC *\/$/;"	m	struct:genotype
NA07055	hg/inc/genotype.h	/^    char NA07055[3];	\/*  NA07055	# CC *\/$/;"	m	struct:genotype
NA07056	hg/inc/genotype.h	/^    char NA07056[3];	\/*  NA07056	# CC *\/$/;"	m	struct:genotype
NA07345	hg/inc/genotype.h	/^    char NA07345[3];	\/*  NA07345	# CC *\/$/;"	m	struct:genotype
NA07348	hg/inc/genotype.h	/^    char NA07348[3];	\/*  NA07348	# CC *\/$/;"	m	struct:genotype
NA07357	hg/inc/genotype.h	/^    char NA07357[3];	\/*  NA07357	# CC *\/$/;"	m	struct:genotype
NA10830	hg/inc/genotype.h	/^    char NA10830[3];	\/*  NA10830	# CC *\/$/;"	m	struct:genotype
NA10831	hg/inc/genotype.h	/^    char NA10831[3];	\/*  NA10831	# CC *\/$/;"	m	struct:genotype
NA10835	hg/inc/genotype.h	/^    char NA10835[3];	\/*  NA10835	# CC *\/$/;"	m	struct:genotype
NA10838	hg/inc/genotype.h	/^    char NA10838[3];	\/*  NA10838	# CC *\/$/;"	m	struct:genotype
NA10839	hg/inc/genotype.h	/^    char NA10839[3];	\/*  NA10839	# CC *\/$/;"	m	struct:genotype
NA10846	hg/inc/genotype.h	/^    char NA10846[3];	\/*  NA10846	# CC *\/$/;"	m	struct:genotype
NA10847	hg/inc/genotype.h	/^    char NA10847[3];	\/*  NA10847	# CC *\/$/;"	m	struct:genotype
NA10851	hg/inc/genotype.h	/^    char NA10851[3];	\/*  NA10851	# CC *\/$/;"	m	struct:genotype
NA10854	hg/inc/genotype.h	/^    char NA10854[3];	\/*  NA10854	# CC *\/$/;"	m	struct:genotype
NA10855	hg/inc/genotype.h	/^    char NA10855[3];	\/*  NA10855	# CC *\/$/;"	m	struct:genotype
NA10856	hg/inc/genotype.h	/^    char NA10856[3];	\/*  NA10856	# CC *\/$/;"	m	struct:genotype
NA10857	hg/inc/genotype.h	/^    char NA10857[3];	\/*  NA10857	# CC *\/$/;"	m	struct:genotype
NA10859	hg/inc/genotype.h	/^    char NA10859[3];	\/*  NA10859	# CC *\/$/;"	m	struct:genotype
NA10860	hg/inc/genotype.h	/^    char NA10860[3];	\/*  NA10860	# CC *\/$/;"	m	struct:genotype
NA10861	hg/inc/genotype.h	/^    char NA10861[3];	\/*  NA10861	# CC *\/$/;"	m	struct:genotype
NA10863	hg/inc/genotype.h	/^    char NA10863[3];	\/*  NA10863	# CC *\/$/;"	m	struct:genotype
NA11036	hg/inc/affy120KDetails.h	/^    char NA11036[3];	\/* Individual 04 *\/$/;"	m	struct:affy120KDetails
NA11036	hg/inc/affyGenoDetails.h	/^    char NA11036[3];	\/* Individual 04 *\/$/;"	m	struct:affyGenoDetails
NA11038	hg/inc/affy120KDetails.h	/^    char NA11038[3];	\/* Individual 05 *\/$/;"	m	struct:affy120KDetails
NA11038	hg/inc/affyGenoDetails.h	/^    char NA11038[3];	\/* Individual 05 *\/$/;"	m	struct:affyGenoDetails
NA11829	hg/inc/genotype.h	/^    char NA11829[3];	\/*  NA11829	# CC *\/$/;"	m	struct:genotype
NA11830	hg/inc/genotype.h	/^    char NA11830[3];	\/*  NA11830	# CC *\/$/;"	m	struct:genotype
NA11831	hg/inc/genotype.h	/^    char NA11831[3];	\/*  NA11831	# CC *\/$/;"	m	struct:genotype
NA11832	hg/inc/genotype.h	/^    char NA11832[3];	\/*  NA11832	# CC *\/$/;"	m	struct:genotype
NA11839	hg/inc/genotype.h	/^    char NA11839[3];	\/*  NA11839	# CC *\/$/;"	m	struct:genotype
NA11840	hg/inc/genotype.h	/^    char NA11840[3];	\/*  NA11840	# CC *\/$/;"	m	struct:genotype
NA11881	hg/inc/genotype.h	/^    char NA11881[3];	\/*  NA11881	# CC *\/$/;"	m	struct:genotype
NA11882	hg/inc/genotype.h	/^    char NA11882[3];	\/*  NA11882	# CC *\/$/;"	m	struct:genotype
NA11992	hg/inc/genotype.h	/^    char NA11992[3];	\/*  NA11992	# CC *\/$/;"	m	struct:genotype
NA11993	hg/inc/genotype.h	/^    char NA11993[3];	\/*  NA11993	# CC *\/$/;"	m	struct:genotype
NA11993_dup	hg/inc/genotype.h	/^    char NA11993_dup[3];	\/*  NA11993.dup	# CC *\/$/;"	m	struct:genotype
NA11994	hg/inc/genotype.h	/^    char NA11994[3];	\/*  NA11994	# AC *\/$/;"	m	struct:genotype
NA11995	hg/inc/genotype.h	/^    char NA11995[3];	\/*  NA11995	# CC *\/$/;"	m	struct:genotype
NA12003	hg/inc/genotype.h	/^    char NA12003[3];	\/*  NA12003	# CC *\/$/;"	m	struct:genotype
NA12003_dup	hg/inc/genotype.h	/^    char NA12003_dup[3];	\/*  NA12003.dup	# CC *\/$/;"	m	struct:genotype
NA12004	hg/inc/genotype.h	/^    char NA12004[3];	\/*  NA12004	# CC *\/$/;"	m	struct:genotype
NA12005	hg/inc/genotype.h	/^    char NA12005[3];	\/*  NA12005	# CC *\/$/;"	m	struct:genotype
NA12006	hg/inc/genotype.h	/^    char NA12006[3];	\/*  NA12006	# CC *\/$/;"	m	struct:genotype
NA12043	hg/inc/genotype.h	/^    char NA12043[3];	\/*  NA12043	# CC *\/$/;"	m	struct:genotype
NA12044	hg/inc/genotype.h	/^    char NA12044[3];	\/*  NA12044	# CC *\/$/;"	m	struct:genotype
NA12056	hg/inc/genotype.h	/^    char NA12056[3];	\/*  NA12056	# CC *\/$/;"	m	struct:genotype
NA12057	hg/inc/genotype.h	/^    char NA12057[3];	\/*  NA12057	# CC *\/$/;"	m	struct:genotype
NA12144	hg/inc/genotype.h	/^    char NA12144[3];	\/*  NA12144	# CC *\/$/;"	m	struct:genotype
NA12145	hg/inc/genotype.h	/^    char NA12145[3];	\/*  NA12145	# CC *\/$/;"	m	struct:genotype
NA12146	hg/inc/genotype.h	/^    char NA12146[3];	\/*  NA12146	# CC *\/$/;"	m	struct:genotype
NA12154	hg/inc/genotype.h	/^    char NA12154[3];	\/*  NA12154	# CC *\/$/;"	m	struct:genotype
NA12155	hg/inc/genotype.h	/^    char NA12155[3];	\/*  NA12155	# CC *\/$/;"	m	struct:genotype
NA12156	hg/inc/genotype.h	/^    char NA12156[3];	\/*  NA12156	# CC *\/$/;"	m	struct:genotype
NA12156_dup	hg/inc/genotype.h	/^    char NA12156_dup[3];	\/*  NA12156.dup	# CC *\/$/;"	m	struct:genotype
NA12234	hg/inc/genotype.h	/^    char NA12234[3];	\/*  NA12234	# CC *\/$/;"	m	struct:genotype
NA12236	hg/inc/genotype.h	/^    char NA12236[3];	\/*  NA12236	# CC *\/$/;"	m	struct:genotype
NA12239	hg/inc/genotype.h	/^    char NA12239[3];	\/*  NA12239	# CC *\/$/;"	m	struct:genotype
NA12248	hg/inc/genotype.h	/^    char NA12248[3];	\/*  NA12248	# CC *\/$/;"	m	struct:genotype
NA12248_dup	hg/inc/genotype.h	/^    char NA12248_dup[3];	\/*  NA12248.dup	# CC *\/$/;"	m	struct:genotype
NA12249	hg/inc/genotype.h	/^    char NA12249[3];	\/*  NA12249	# CC *\/$/;"	m	struct:genotype
NA12264	hg/inc/genotype.h	/^    char NA12264[3];	\/*  NA12264	# CC *\/$/;"	m	struct:genotype
NA12707	hg/inc/genotype.h	/^    char NA12707[3];	\/*  NA12707	# CC *\/$/;"	m	struct:genotype
NA12716	hg/inc/genotype.h	/^    char NA12716[3];	\/*  NA12716	# CC *\/$/;"	m	struct:genotype
NA12717	hg/inc/genotype.h	/^    char NA12717[3];	\/*  NA12717	# CC *\/$/;"	m	struct:genotype
NA12740	hg/inc/genotype.h	/^    char NA12740[3];	\/*  NA12740	# CC *\/$/;"	m	struct:genotype
NA12750	hg/inc/genotype.h	/^    char NA12750[3];	\/*  NA12750	# CC *\/$/;"	m	struct:genotype
NA12751	hg/inc/genotype.h	/^    char NA12751[3];	\/*  NA12751	# CC *\/$/;"	m	struct:genotype
NA12752	hg/inc/genotype.h	/^    char NA12752[3];	\/*  NA12752	# CC *\/$/;"	m	struct:genotype
NA12753	hg/inc/genotype.h	/^    char NA12753[3];	\/*  NA12753	# CC *\/$/;"	m	struct:genotype
NA12760	hg/inc/genotype.h	/^    char NA12760[3];	\/*  NA12760	# AC *\/$/;"	m	struct:genotype
NA12761	hg/inc/genotype.h	/^    char NA12761[3];	\/*  NA12761	# CC *\/$/;"	m	struct:genotype
NA12762	hg/inc/genotype.h	/^    char NA12762[3];	\/*  NA12762	# CC *\/$/;"	m	struct:genotype
NA12763	hg/inc/genotype.h	/^    char NA12763[3];	\/*  NA12763	# CC *\/$/;"	m	struct:genotype
NA12801	hg/inc/genotype.h	/^    char NA12801[3];	\/*  NA12801	# CC *\/$/;"	m	struct:genotype
NA12802	hg/inc/genotype.h	/^    char NA12802[3];	\/*  NA12802	# CC *\/$/;"	m	struct:genotype
NA12812	hg/inc/genotype.h	/^    char NA12812[3];	\/*  NA12812	# AC *\/$/;"	m	struct:genotype
NA12813	hg/inc/genotype.h	/^    char NA12813[3];	\/*  NA12813	# CC *\/$/;"	m	struct:genotype
NA12814	hg/inc/genotype.h	/^    char NA12814[3];	\/*  NA12814	# CC *\/$/;"	m	struct:genotype
NA12815	hg/inc/genotype.h	/^    char NA12815[3];	\/*  NA12815	# CC *\/$/;"	m	struct:genotype
NA12864	hg/inc/genotype.h	/^    char NA12864[3];	\/*  NA12864	# CC *\/$/;"	m	struct:genotype
NA12865	hg/inc/genotype.h	/^    char NA12865[3];	\/*  NA12865	# CC *\/$/;"	m	struct:genotype
NA12872	hg/inc/genotype.h	/^    char NA12872[3];	\/*  NA12872	# CC *\/$/;"	m	struct:genotype
NA12873	hg/inc/genotype.h	/^    char NA12873[3];	\/*  NA12873	# AC *\/$/;"	m	struct:genotype
NA12874	hg/inc/genotype.h	/^    char NA12874[3];	\/*  NA12874	# CC *\/$/;"	m	struct:genotype
NA12875	hg/inc/genotype.h	/^    char NA12875[3];	\/*  NA12875	# CC *\/$/;"	m	struct:genotype
NA12878	hg/inc/genotype.h	/^    char NA12878[3];	\/*  NA12878	# CC *\/$/;"	m	struct:genotype
NA12891	hg/inc/genotype.h	/^    char NA12891[3];	\/*  NA12891	# CC *\/$/;"	m	struct:genotype
NA12892	hg/inc/genotype.h	/^    char NA12892[3];	\/*  NA12892	# CC *\/$/;"	m	struct:genotype
NA13056	hg/inc/affy120KDetails.h	/^    char NA13056[3];	\/* Individual 06 *\/$/;"	m	struct:affy120KDetails
NA13056	hg/inc/affyGenoDetails.h	/^    char NA13056[3];	\/* Individual 06 *\/$/;"	m	struct:affyGenoDetails
NA17011	hg/inc/affy120KDetails.h	/^    char NA17011[3];	\/* Individual 07 *\/$/;"	m	struct:affy120KDetails
NA17011	hg/inc/affyGenoDetails.h	/^    char NA17011[3];	\/* Individual 07 *\/$/;"	m	struct:affyGenoDetails
NA17012	hg/inc/affy120KDetails.h	/^    char NA17012[3];	\/* Individual 08 *\/$/;"	m	struct:affy120KDetails
NA17012	hg/inc/affyGenoDetails.h	/^    char NA17012[3];	\/* Individual 08 *\/$/;"	m	struct:affyGenoDetails
NA17013	hg/inc/affy120KDetails.h	/^    char NA17013[3];	\/* Individual 09 *\/$/;"	m	struct:affy120KDetails
NA17013	hg/inc/affyGenoDetails.h	/^    char NA17013[3];	\/* Individual 09 *\/$/;"	m	struct:affyGenoDetails
NA17014	hg/inc/affy120KDetails.h	/^    char NA17014[3];	\/* Individual 10 *\/$/;"	m	struct:affy120KDetails
NA17014	hg/inc/affyGenoDetails.h	/^    char NA17014[3];	\/* Individual 10 *\/$/;"	m	struct:affyGenoDetails
NA17015	hg/inc/affy120KDetails.h	/^    char NA17015[3];	\/* Individual 11 *\/$/;"	m	struct:affy120KDetails
NA17015	hg/inc/affyGenoDetails.h	/^    char NA17015[3];	\/* Individual 11 *\/$/;"	m	struct:affyGenoDetails
NA17016	hg/inc/affy120KDetails.h	/^    char NA17016[3];	\/* Individual 12 *\/$/;"	m	struct:affy120KDetails
NA17016	hg/inc/affyGenoDetails.h	/^    char NA17016[3];	\/* Individual 12 *\/$/;"	m	struct:affyGenoDetails
NA17101	hg/inc/affy120KDetails.h	/^    char NA17101[3];	\/* Individual 13 *\/$/;"	m	struct:affy120KDetails
NA17101	hg/inc/affyGenoDetails.h	/^    char NA17101[3];	\/* Individual 13 *\/$/;"	m	struct:affyGenoDetails
NA17102	hg/inc/affy120KDetails.h	/^    char NA17102[3];	\/* Individual 14 *\/$/;"	m	struct:affy120KDetails
NA17102	hg/inc/affyGenoDetails.h	/^    char NA17102[3];	\/* Individual 14 *\/$/;"	m	struct:affyGenoDetails
NA17103	hg/inc/affy120KDetails.h	/^    char NA17103[3];	\/* Individual 15 *\/$/;"	m	struct:affy120KDetails
NA17103	hg/inc/affyGenoDetails.h	/^    char NA17103[3];	\/* Individual 15 *\/$/;"	m	struct:affyGenoDetails
NA17104	hg/inc/affy120KDetails.h	/^    char NA17104[3];	\/* Individual 16 *\/$/;"	m	struct:affy120KDetails
NA17104	hg/inc/affyGenoDetails.h	/^    char NA17104[3];	\/* Individual 16 *\/$/;"	m	struct:affyGenoDetails
NA17105	hg/inc/affy120KDetails.h	/^    char NA17105[3];	\/* Individual 17 *\/$/;"	m	struct:affy120KDetails
NA17105	hg/inc/affyGenoDetails.h	/^    char NA17105[3];	\/* Individual 17 *\/$/;"	m	struct:affyGenoDetails
NA17106	hg/inc/affy120KDetails.h	/^    char NA17106[3];	\/* Individual 18 *\/$/;"	m	struct:affy120KDetails
NA17106	hg/inc/affyGenoDetails.h	/^    char NA17106[3];	\/* Individual 18 *\/$/;"	m	struct:affyGenoDetails
NA17201	hg/inc/affy120KDetails.h	/^    char NA17201[3];	\/* Individual 19 *\/$/;"	m	struct:affy120KDetails
NA17201	hg/inc/affyGenoDetails.h	/^    char NA17201[3];	\/* Individual 19 *\/$/;"	m	struct:affyGenoDetails
NA17202	hg/inc/affy120KDetails.h	/^    char NA17202[3];	\/* Individual 20 *\/$/;"	m	struct:affy120KDetails
NA17202	hg/inc/affyGenoDetails.h	/^    char NA17202[3];	\/* Individual 20 *\/$/;"	m	struct:affyGenoDetails
NA17203	hg/inc/affy120KDetails.h	/^    char NA17203[3];	\/* Individual 21 *\/$/;"	m	struct:affy120KDetails
NA17203	hg/inc/affyGenoDetails.h	/^    char NA17203[3];	\/* Individual 21 *\/$/;"	m	struct:affyGenoDetails
NA17204	hg/inc/affy120KDetails.h	/^    char NA17204[3];	\/* Individual 22 *\/$/;"	m	struct:affy120KDetails
NA17204	hg/inc/affyGenoDetails.h	/^    char NA17204[3];	\/* Individual 22 *\/$/;"	m	struct:affyGenoDetails
NA17205	hg/inc/affy120KDetails.h	/^    char NA17205[3];	\/* Individual 23 *\/$/;"	m	struct:affy120KDetails
NA17205	hg/inc/affyGenoDetails.h	/^    char NA17205[3];	\/* Individual 23 *\/$/;"	m	struct:affyGenoDetails
NA17206	hg/inc/affy120KDetails.h	/^    char NA17206[3];	\/* Individual 24 *\/$/;"	m	struct:affy120KDetails
NA17206	hg/inc/affyGenoDetails.h	/^    char NA17206[3];	\/* Individual 24 *\/$/;"	m	struct:affyGenoDetails
NA17207	hg/inc/affy120KDetails.h	/^    char NA17207[3];	\/* Individual 25 *\/$/;"	m	struct:affy120KDetails
NA17207	hg/inc/affyGenoDetails.h	/^    char NA17207[3];	\/* Individual 25 *\/$/;"	m	struct:affyGenoDetails
NA17208	hg/inc/affy120KDetails.h	/^    char NA17208[3];	\/* Individual 26 *\/$/;"	m	struct:affy120KDetails
NA17208	hg/inc/affyGenoDetails.h	/^    char NA17208[3];	\/* Individual 26 *\/$/;"	m	struct:affyGenoDetails
NA17210	hg/inc/affy120KDetails.h	/^    char NA17210[3];	\/* Individual 27 *\/$/;"	m	struct:affy120KDetails
NA17210	hg/inc/affyGenoDetails.h	/^    char NA17210[3];	\/* Individual 27 *\/$/;"	m	struct:affyGenoDetails
NA17211	hg/inc/affy120KDetails.h	/^    char NA17211[3];	\/* Individual 28 *\/$/;"	m	struct:affy120KDetails
NA17211	hg/inc/affyGenoDetails.h	/^    char NA17211[3];	\/* Individual 28 *\/$/;"	m	struct:affyGenoDetails
NA17212	hg/inc/affy120KDetails.h	/^    char NA17212[3];	\/* Individual 29 *\/$/;"	m	struct:affy120KDetails
NA17212	hg/inc/affyGenoDetails.h	/^    char NA17212[3];	\/* Individual 29 *\/$/;"	m	struct:affyGenoDetails
NA17213	hg/inc/affy120KDetails.h	/^    char NA17213[3];	\/* Individual 30 *\/$/;"	m	struct:affy120KDetails
NA17213	hg/inc/affyGenoDetails.h	/^    char NA17213[3];	\/* Individual 30 *\/$/;"	m	struct:affyGenoDetails
NACHARS	lib/mafScore.c	16;"	d	file:
NAN	inc/common.h	63;"	d
NCBInum	hg/inc/cddInfo.h	/^    char *NCBInum;	\/* NCBI Identifier *\/$/;"	m	struct:cddInfo
NCRNA_H	hg/inc/ncRna.h	6;"	d
NCRNA_NUM_COLS	hg/inc/ncRna.h	8;"	d
NEEDMEM_LIMIT	lib/memalloc.c	177;"	d	file:
NETALIGN_H	hg/inc/netAlign.h	6;"	d
NETCART_H	hg/inc/netCart.h	4;"	d
NET_COLOR	hg/inc/netCart.h	8;"	d
NET_FTP_TIMEOUT	lib/net.c	575;"	d	file:
NET_H	inc/net.h	8;"	d
NET_HTTPS_H	inc/https.h	4;"	d
NET_LEVEL	hg/inc/netCart.h	15;"	d
NET_LEVEL_0	hg/inc/netCart.h	17;"	d
NET_LEVEL_1	hg/inc/netCart.h	18;"	d
NET_LEVEL_2	hg/inc/netCart.h	19;"	d
NET_LEVEL_3	hg/inc/netCart.h	20;"	d
NET_LEVEL_4	hg/inc/netCart.h	21;"	d
NET_LEVEL_5	hg/inc/netCart.h	22;"	d
NET_LEVEL_6	hg/inc/netCart.h	23;"	d
NET_OPT_TOP_ONLY	hg/inc/hui.h	130;"	d
NEW_ITEM_CATEGORY	hg/inc/wikiTrack.h	139;"	d
NEW_ITEM_CLASS	hg/inc/wikiTrack.h	138;"	d
NEW_ITEM_COLOR	hg/inc/wikiTrack.h	136;"	d
NEW_ITEM_COMMENT	hg/inc/wikiTrack.h	132;"	d
NEW_ITEM_COMMENT_DEFAULT	hg/inc/wikiTrack.h	134;"	d
NEW_ITEM_NAME	hg/inc/wikiTrack.h	135;"	d
NEW_ITEM_SCORE	hg/inc/wikiTrack.h	133;"	d
NEW_ITEM_STRAND	hg/inc/wikiTrack.h	137;"	d
NIBTWO_H	inc/nibTwo.h	5;"	d
NIB_BASE_NAME	inc/nib.h	26;"	d
NIB_H	inc/nib.h	9;"	d
NIB_MASK_MAP	inc/nib.h	22;"	d
NIB_MASK_MIXED	inc/nib.h	20;"	d
NMD_transcript_variant	hg/inc/soterm.h	/^    NMD_transcript_variant=1621,$/;"	e	enum:__anon11
NONCODINGUI_H	hg/inc/nonCodingUi.h	5;"	d
NO_COLORS	hg/inc/chainCart.h	17;"	d
NO_ITEM_COMMENT_SUPPLIED	hg/inc/wikiTrack.h	141;"	d
NO_SCORE_FILTER	hg/inc/hui.h	993;"	d
NO_VALUE	inc/cheapcgi.h	285;"	d
NSizeClinical	hg/inc/ispyTables.h	/^    float *NSizeClinical;	\/* Size of Largest Palpable Node (cm) - Clinical Assessment at Baseline *\/$/;"	m	struct:respEval
NT4_H	inc/nt4.h	7;"	d
NUM_AMINO_ACIDS	hg/inc/pbCommon.h	8;"	d
NUM_STANDARD_AMINO_ACIDS	hg/inc/pbCommon.h	15;"	d
N_BASE_VAL	inc/dnautil.h	28;"	d
N_CHAR	lib/oligoTm.c	161;"	d	file:
NoEscape	lib/htmshell.c	/^static bool NoEscape = FALSE;$/;"	v	file:
NodesExamined	hg/inc/ispyTables.h	/^    char *NodesExamined;	\/* Total Number of Axillary + Sentinel (post) nodes Examined, postchemotherapy *\/$/;"	m	struct:postSurgery
NumPosNodes	hg/inc/ispyTables.h	/^    int *NumPosNodes;	\/* Total Number positive Axillary + Sentinel (post) Nodes, post-chemotherapy *\/$/;"	m	struct:postSurgery
O	lib/mafScore.c	/^	int O;$/;"	m	struct:gap_scores	file:
OBSCURE_H	inc/obscure.h	8;"	d
OLDGFF_H	inc/oldGff.h	11;"	d
OLIGOTM_H	inc/oligoTm.h	55;"	d
OLIGO_MATCH_TRACK_LABEL	hg/inc/hui.h	87;"	d
OLIGO_MATCH_TRACK_LONGLABEL	hg/inc/hui.h	88;"	d
OLIGO_MATCH_TRACK_NAME	hg/inc/hui.h	86;"	d
OMICIAATTR_NUM_COLS	hg/inc/omicia.h	253;"	d
OMICIAAUTO_NUM_COLS	hg/inc/omicia.h	12;"	d
OMICIAHAND_NUM_COLS	hg/inc/omicia.h	93;"	d
OMICIALINK_NUM_COLS	hg/inc/omicia.h	174;"	d
OMICIAUI_H	hg/inc/omiciaUi.h	3;"	d
OMICIA_H	hg/inc/omicia.h	6;"	d
OMIMTITLE_H	hg/inc/omimTitle.h	6;"	d
OMIMTITLE_NUM_COLS	hg/inc/omimTitle.h	8;"	d
ONSTUDY_NUM_COLS	hg/inc/ispyTables.h	252;"	d
OOC_H	inc/ooc.h	6;"	d
OOUTILS_H	hg/inc/ooUtils.h	4;"	d
OPEN_ERROR	lib/gifcodes.h	43;"	d
OPTIONS_H	inc/options.h	7;"	d
OPTION_BOOLEAN	inc/options.h	10;"	d
OPTION_DOUBLE	inc/options.h	16;"	d
OPTION_FLOAT	inc/options.h	13;"	d
OPTION_INT	inc/options.h	12;"	d
OPTION_LONG_LONG	inc/options.h	14;"	d
OPTION_MULTI	inc/options.h	15;"	d
OPTION_STRING	inc/options.h	11;"	d
OPTION_TYPE_MASK	inc/options.h	19;"	d
OPT_CHROM_COLORS	hg/inc/chainCart.h	9;"	d
OPT_CHROM_FILTER	hg/inc/chainCart.h	10;"	d
OPT_ITEM_RGB	hg/inc/bedCart.h	10;"	d
OREGANNOATTR_NUM_COLS	hg/inc/oreganno.h	93;"	d
OREGANNOLINK_NUM_COLS	hg/inc/oreganno.h	170;"	d
OREGANNOOTHERATTR_NUM_COLS	hg/inc/oregannoOther.h	93;"	d
OREGANNOOTHERLINK_NUM_COLS	hg/inc/oregannoOther.h	170;"	d
OREGANNOOTHER_H	hg/inc/oregannoOther.h	6;"	d
OREGANNOOTHER_NUM_COLS	hg/inc/oregannoOther.h	12;"	d
OREGANNOUI_H	hg/inc/oregannoUi.h	3;"	d
OREGANNO_H	hg/inc/oreganno.h	6;"	d
OREGANNO_NUM_COLS	hg/inc/oreganno.h	12;"	d
ORFLen	hg/inc/llaInfo.h	/^    unsigned ORFLen;	\/* Source ORF length *\/$/;"	m	struct:llaInfo
ORTHOALLELES_H	hg/inc/orthoAlleles.h	6;"	d
ORTHOALLELES_NUM_COLS	hg/inc/orthoAlleles.h	8;"	d
OUT_OF_MEMORY	lib/gifcodes.h	39;"	d
Offset	hg/lib/wigAsciiToBinary.c	/^static unsigned long long Offset = 0;	\/* from data input	*\/$/;"	v	file:
P	lib/md5.c	59;"	d	file:
PAIREDTAGALIGN_H	hg/inc/pairedTagAlign.h	6;"	d
PAIREDTAGALIGN_NUM_COLS	hg/inc/pairedTagAlign.h	8;"	d
PAIRHMM_H	inc/pairHmm.h	8;"	d
PAIRWISE_HEIGHT	hg/inc/hgMaf.h	21;"	d
PAIRWISE_VAR	hg/inc/hgMaf.h	20;"	d
PARENT_MASK	hg/inc/trackDb.h	83;"	d
PARENT_NODE	hg/inc/trackDb.h	86;"	d
PATH_LEN	inc/common.h	127;"	d
PATIENTINFO_NUM_COLS	hg/inc/ispyTables.h	89;"	d
PATIENT_NUM_COLS	hg/inc/ispyTables.h	12;"	d
PATSPACE_H	inc/patSpace.h	10;"	d
PBCOMMON_H	hg/inc/pbCommon.h	5;"	d
PBSTAMP_H	hg/inc/pbStamp.h	6;"	d
PBSTAMP_NUM_COLS	hg/inc/pbStamp.h	8;"	d
PCRRESULT_H	hg/inc/pcrResult.h	4;"	d
PCR_RESULT_TARGET_STYLE	hg/inc/pcrResult.h	15;"	d
PCR_RESULT_TARGET_STYLE_DEFAULT	hg/inc/pcrResult.h	18;"	d
PCR_RESULT_TARGET_STYLE_TALL	hg/inc/pcrResult.h	17;"	d
PCR_RESULT_TARGET_STYLE_TRIM	hg/inc/pcrResult.h	16;"	d
PCR_RESULT_TRACK_LABEL	hg/inc/pcrResult.h	11;"	d
PCR_RESULT_TRACK_LONGLABEL	hg/inc/pcrResult.h	12;"	d
PCR_RESULT_TRACK_NAME	hg/inc/pcrResult.h	10;"	d
PD01	hg/inc/affy120KDetails.h	/^    char PD01[3];	\/* Individual 31 *\/$/;"	m	struct:affy120KDetails
PD01	hg/inc/affyGenoDetails.h	/^    char PD01[3];	\/* Individual 31 *\/$/;"	m	struct:affyGenoDetails
PD02	hg/inc/affy120KDetails.h	/^    char PD02[3];	\/* Individual 32 *\/$/;"	m	struct:affy120KDetails
PD02	hg/inc/affyGenoDetails.h	/^    char PD02[3];	\/* Individual 32 *\/$/;"	m	struct:affyGenoDetails
PD03	hg/inc/affy120KDetails.h	/^    char PD03[3];	\/* Individual 33 *\/$/;"	m	struct:affy120KDetails
PD03	hg/inc/affyGenoDetails.h	/^    char PD03[3];	\/* Individual 33 *\/$/;"	m	struct:affyGenoDetails
PD04	hg/inc/affy120KDetails.h	/^    char PD04[3];	\/* Individual 34 *\/$/;"	m	struct:affy120KDetails
PD04	hg/inc/affyGenoDetails.h	/^    char PD04[3];	\/* Individual 34 *\/$/;"	m	struct:affyGenoDetails
PD05	hg/inc/affy120KDetails.h	/^    char PD05[3];	\/* Individual 35 *\/$/;"	m	struct:affy120KDetails
PD05	hg/inc/affyGenoDetails.h	/^    char PD05[3];	\/* Individual 35 *\/$/;"	m	struct:affyGenoDetails
PD06	hg/inc/affy120KDetails.h	/^    char PD06[3];	\/* Individual 36 *\/$/;"	m	struct:affy120KDetails
PD06	hg/inc/affyGenoDetails.h	/^    char PD06[3];	\/* Individual 36 *\/$/;"	m	struct:affyGenoDetails
PD07	hg/inc/affy120KDetails.h	/^    char PD07[3];	\/* Individual 37 *\/$/;"	m	struct:affy120KDetails
PD07	hg/inc/affyGenoDetails.h	/^    char PD07[3];	\/* Individual 37 *\/$/;"	m	struct:affyGenoDetails
PD08	hg/inc/affy120KDetails.h	/^    char PD08[3];	\/* Individual 38 *\/$/;"	m	struct:affy120KDetails
PD08	hg/inc/affyGenoDetails.h	/^    char PD08[3];	\/* Individual 38 *\/$/;"	m	struct:affyGenoDetails
PD09	hg/inc/affy120KDetails.h	/^    char PD09[3];	\/* Individual 39 *\/$/;"	m	struct:affy120KDetails
PD09	hg/inc/affyGenoDetails.h	/^    char PD09[3];	\/* Individual 39 *\/$/;"	m	struct:affyGenoDetails
PD10	hg/inc/affy120KDetails.h	/^    char PD10[3];	\/* Individual 40 *\/$/;"	m	struct:affy120KDetails
PD10	hg/inc/affyGenoDetails.h	/^    char PD10[3];	\/* Individual 40 *\/$/;"	m	struct:affyGenoDetails
PD11	hg/inc/affy120KDetails.h	/^    char PD11[3];	\/* Individual 41 *\/$/;"	m	struct:affy120KDetails
PD11	hg/inc/affyGenoDetails.h	/^    char PD11[3];	\/* Individual 41 *\/$/;"	m	struct:affyGenoDetails
PD12	hg/inc/affy120KDetails.h	/^    char PD12[3];	\/* Individual 42 *\/$/;"	m	struct:affy120KDetails
PD12	hg/inc/affyGenoDetails.h	/^    char PD12[3];	\/* Individual 42 *\/$/;"	m	struct:affyGenoDetails
PD13	hg/inc/affy120KDetails.h	/^    char PD13[3];	\/* Individual 43 *\/$/;"	m	struct:affy120KDetails
PD13	hg/inc/affyGenoDetails.h	/^    char PD13[3];	\/* Individual 43 *\/$/;"	m	struct:affyGenoDetails
PD14	hg/inc/affy120KDetails.h	/^    char PD14[3];	\/* Individual 44 *\/$/;"	m	struct:affy120KDetails
PD14	hg/inc/affyGenoDetails.h	/^    char PD14[3];	\/* Individual 44 *\/$/;"	m	struct:affyGenoDetails
PD15	hg/inc/affy120KDetails.h	/^    char PD15[3];	\/* Individual 45 *\/$/;"	m	struct:affy120KDetails
PD15	hg/inc/affyGenoDetails.h	/^    char PD15[3];	\/* Individual 45 *\/$/;"	m	struct:affyGenoDetails
PD16	hg/inc/affy120KDetails.h	/^    char PD16[3];	\/* Individual 46 *\/$/;"	m	struct:affy120KDetails
PD16	hg/inc/affyGenoDetails.h	/^    char PD16[3];	\/* Individual 46 *\/$/;"	m	struct:affyGenoDetails
PD17	hg/inc/affy120KDetails.h	/^    char PD17[3];	\/* Individual 47 *\/$/;"	m	struct:affy120KDetails
PD17	hg/inc/affyGenoDetails.h	/^    char PD17[3];	\/* Individual 47 *\/$/;"	m	struct:affyGenoDetails
PD18	hg/inc/affy120KDetails.h	/^    char PD18[3];	\/* Individual 48 *\/$/;"	m	struct:affy120KDetails
PD18	hg/inc/affyGenoDetails.h	/^    char PD18[3];	\/* Individual 48 *\/$/;"	m	struct:affyGenoDetails
PD19	hg/inc/affy120KDetails.h	/^    char PD19[3];	\/* Individual 49 *\/$/;"	m	struct:affy120KDetails
PD19	hg/inc/affyGenoDetails.h	/^    char PD19[3];	\/* Individual 49 *\/$/;"	m	struct:affyGenoDetails
PD20	hg/inc/affy120KDetails.h	/^    char PD20[3];	\/* Individual 50 *\/$/;"	m	struct:affy120KDetails
PD20	hg/inc/affyGenoDetails.h	/^    char PD20[3];	\/* Individual 50 *\/$/;"	m	struct:affyGenoDetails
PD21	hg/inc/affy120KDetails.h	/^    char PD21[3];	\/* Individual 51 *\/$/;"	m	struct:affy120KDetails
PD21	hg/inc/affyGenoDetails.h	/^    char PD21[3];	\/* Individual 51 *\/$/;"	m	struct:affyGenoDetails
PD22	hg/inc/affy120KDetails.h	/^    char PD22[3];	\/* Individual 52 *\/$/;"	m	struct:affy120KDetails
PD22	hg/inc/affyGenoDetails.h	/^    char PD22[3];	\/* Individual 52 *\/$/;"	m	struct:affyGenoDetails
PD23	hg/inc/affy120KDetails.h	/^    char PD23[3];	\/* Individual 53 *\/$/;"	m	struct:affy120KDetails
PD23	hg/inc/affyGenoDetails.h	/^    char PD23[3];	\/* Individual 53 *\/$/;"	m	struct:affyGenoDetails
PD24	hg/inc/affy120KDetails.h	/^    char PD24[3];	\/* Individual 54 *\/$/;"	m	struct:affy120KDetails
PD24	hg/inc/affyGenoDetails.h	/^    char PD24[3];	\/* Individual 54 *\/$/;"	m	struct:affyGenoDetails
PEAKCLUSTER_H	inc/peakCluster.h	4;"	d
PEPPRED_H	hg/inc/pepPred.h	6;"	d
PEPTIDEMAPPING_H	hg/inc/peptideMapping.h	6;"	d
PEPTIDEMAPPING_NUM_COLS	hg/inc/peptideMapping.h	8;"	d
PGPHENOASSOC_H	hg/inc/pgPhenoAssoc.h	6;"	d
PGPHENOASSOC_NUM_COLS	hg/inc/pgPhenoAssoc.h	8;"	d
PGPOLYPHENPRED_H	hg/inc/pgPolyphenPred.h	6;"	d
PGPOLYPHENPRED_NUM_COLS	hg/inc/pgPolyphenPred.h	8;"	d
PGSIFTPRED_H	hg/inc/pgSiftPred.h	6;"	d
PGSIFTPRED_NUM_COLS	hg/inc/pgSiftPred.h	8;"	d
PGSNP_H	hg/inc/pgSnp.h	6;"	d
PGSNP_NUM_COLS	hg/inc/pgSnp.h	14;"	d
PHYLOTREE_H	inc/phyloTree.h	5;"	d
PI	hg/inc/codeBlastScore.h	/^    float PI;	\/* Percent Identity *\/$/;"	m	struct:codeBlastScore
PI	hg/inc/sargassoSeaXra.h	/^    float PI;	\/* Percent Identity *\/$/;"	m	struct:sargassoSeaXra
PIPELINE_H	inc/pipeline.h	66;"	d
PIXMASK	lib/gifcodes.h	19;"	d
PLASENDPAIRS_H	hg/inc/plasEndPairs.h	6;"	d
PLUS_BUTTON	hg/lib/hui.c	52;"	d	file:
PLUS_BUTTON	hg/lib/hui.c	58;"	d	file:
PM_BUTTON	hg/lib/hui.c	55;"	d	file:
PM_BUTTON_UC	hg/lib/hui.c	6383;"	d	file:
POLYGENOTYPE_H	hg/inc/polyGenotype.h	6;"	d
POLYGENOTYPE_NUM_COLS	hg/inc/polyGenotype.h	12;"	d
POLY_SOURCE	hg/inc/dbRIP.h	112;"	d
POLY_SOURCE_DEFAULT	hg/inc/dbRIP.h	119;"	d
POLY_SUBFAMILY	hg/inc/dbRIP.h	113;"	d
POLY_SUBFAMILY_DEFAULT	hg/inc/dbRIP.h	120;"	d
PORTABLE_H	inc/portable.h	8;"	d
POSITION_SUFFIX	hg/lib/cart.c	308;"	d	file:
POSTSURGERY_NUM_COLS	hg/inc/ispyTables.h	339;"	d
PRI_ALERT	lib/log.c	66;"	d	file:
PRI_CRIT	lib/log.c	67;"	d	file:
PRI_DEBUG	lib/log.c	72;"	d	file:
PRI_EMERG	lib/log.c	65;"	d	file:
PRI_ERR	lib/log.c	68;"	d	file:
PRI_INFO	lib/log.c	71;"	d	file:
PRI_NOTICE	lib/log.c	70;"	d	file:
PRI_WARNING	lib/log.c	69;"	d	file:
PROTEOME_DB_NAME	hg/inc/spDb.h	22;"	d
PROTFEAT_H	hg/inc/protFeat.h	6;"	d
PROTFEAT_NUM_COLS	hg/inc/protFeat.h	8;"	d
PROTVARATTR_NUM_COLS	hg/inc/protVar.h	173;"	d
PROTVARLINK_NUM_COLS	hg/inc/protVar.h	250;"	d
PROTVARPOS_NUM_COLS	hg/inc/protVar.h	92;"	d
PROTVAR_H	hg/inc/protVar.h	6;"	d
PROTVAR_NUM_COLS	hg/inc/protVar.h	12;"	d
PSCMGFX_H	inc/pscmGfx.h	8;"	d
PSCREEN_H	hg/inc/pscreen.h	6;"	d
PSCREEN_NUM_COLS	hg/inc/pscreen.h	8;"	d
PSEUDOGENELINK_H	hg/inc/pseudoGeneLink.h	6;"	d
PSEUDOGENELINK_NUM_COLS	hg/inc/pseudoGeneLink.h	8;"	d
PSGFX_H	inc/psGfx.h	8;"	d
PSLREADER_H	hg/inc/pslReader.h	3;"	d
PSLTBL_H	inc/pslTbl.h	3;"	d
PSLTRANSMAP_H	inc/pslTransMap.h	4;"	d
PSLWQUERYID_H	hg/inc/pslWQueryID.h	6;"	d
PSLWQUERYID_NUM_COLS	hg/inc/pslWQueryID.h	8;"	d
PSLWSCORE_H	hg/inc/pslWScore.h	6;"	d
PSLX_NUM_COLS	inc/psl.h	32;"	d
PSL_H	inc/psl.h	10;"	d
PSL_IS_SOFTMASK	inc/psl.h	40;"	d
PSL_NUM_COLS	inc/psl.h	31;"	d
PSL_SEQUENCE_BASES	hg/inc/hui.h	119;"	d
PSL_SEQUENCE_DEFAULT	hg/inc/hui.h	120;"	d
PSL_TNAMEIX	inc/psl.h	35;"	d
PSL_WITH_BIN	inc/psl.h	36;"	d
PSL_XA_FORMAT	inc/psl.h	37;"	d
PSPOLY_H	inc/psPoly.h	4;"	d
PTHREADWRAP_H	inc/pthreadWrap.h	7;"	d
PTumor1Szcm_Micro	hg/inc/ispyTables.h	/^    float *PTumor1Szcm_Micro;	\/* Primary Tumor Pathological Tumor *\/$/;"	m	struct:postSurgery
PUTAINFO_H	hg/inc/putaInfo.h	6;"	d
PUTAINFO_NUM_COLS	hg/inc/putaInfo.h	12;"	d
PUT_UINT32	lib/md5.c	19;"	d	file:
PVALUE_FILTER	hg/inc/hui.h	996;"	d
PathologyStage	hg/inc/ispyTables.h	/^    char *PathologyStage;	\/* Pathology Assessment Staging *\/$/;"	m	struct:postSurgery
PgR_TS	hg/inc/ispyTables.h	/^    int *PgR_TS;	\/* Progesterone Receptor Status - Total Score Total Score = PgR_PgS+ PgR_IS Considered Allred Score; 3 is positive *\/$/;"	m	struct:onStudy
PgRpos	hg/inc/ispyTables.h	/^    char *PgRpos;	\/* Progesterone Receptor Status (Allred Score or Community determined) *\/$/;"	m	struct:onStudy
QASEQ_H	hg/inc/qaSeq.h	4;"	d
QA_H	inc/qa.h	4;"	d
QUOTEDP_H	inc/quotedP.h	5;"	d
QVALUE_FILTER	hg/inc/hui.h	997;"	d
R	hg/inc/easyGene.h	/^    float R;	\/* R value *\/$/;"	m	struct:easyGene
RAINBOW_H	inc/rainbow.h	4;"	d
RANGETREEFILE_H	hg/inc/rangeTreeFile.h	7;"	d
RANGETREE_H	inc/rangeTree.h	9;"	d
RANKPROP_H	hg/inc/rankProp.h	6;"	d
RANKPROP_NUM_COLS	hg/inc/rankProp.h	8;"	d
RBTREE_H	inc/rbTree.h	8;"	d
READAHEADBUFSIZE	lib/udc.c	1215;"	d	file:
READ_ERROR	lib/gifcodes.h	41;"	d
RECOMBRATEMOUSE_H	hg/inc/recombRateMouse.h	6;"	d
RECOMBRATEMOUSE_NUM_COLS	hg/inc/recombRateMouse.h	8;"	d
RECOMBRATERAT_H	hg/inc/recombRateRat.h	6;"	d
RECOMBRATERAT_NUM_COLS	hg/inc/recombRateRat.h	8;"	d
RECOMBRATE_H	hg/inc/recombRate.h	6;"	d
REFLINK_H	hg/inc/refLink.h	6;"	d
REFSEQSTATUS_H	hg/inc/refSeqStatus.h	6;"	d
REFSEQSTATUS_NUM_COLS	hg/inc/refSeqStatus.h	8;"	d
REGEXHELPER_H	inc/regexHelper.h	4;"	d
REPMASK_H	inc/repMask.h	6;"	d
RESPEVAL_NUM_COLS	hg/inc/ispyTables.h	509;"	d
RETROMRNAINFO_H	hg/inc/retroMrnaInfo.h	6;"	d
RETROMRNAINFO_NUM_COLS	hg/inc/retroMrnaInfo.h	12;"	d
RETRYSLEEPTIME	lib/net.c	1954;"	d	file:
REV_CMPL_DISP	hg/inc/hui.h	107;"	d
RGDId	hg/inc/stsInfoRat.h	/^    unsigned RGDId;	\/* Marker's RGD Id *\/$/;"	m	struct:stsInfoRat
RGDName	hg/inc/stsInfoRat.h	/^    char *RGDName;	\/* Marker's RGD name *\/$/;"	m	struct:stsInfoRat
RGDQTL_H	hg/inc/rgdQtl.h	6;"	d
RGDQTL_NUM_COLS	hg/inc/rgdQtl.h	8;"	d
RHLOD	hg/inc/stsInfoMouseNew.h	/^    float RHLOD;	\/* LOD score of RH map *\/$/;"	m	struct:stsInfoMouseNew
RHLOD	hg/inc/stsInfoRat.h	/^    float RHLOD;	\/* LOD score of RH map *\/$/;"	m	struct:stsInfoRat
RHMAPINFO_H	hg/inc/rhMapInfo.h	6;"	d
RHMAPINFO_NUM_COLS	hg/inc/rhMapInfo.h	8;"	d
RHMAPZFISHINFO_H	hg/inc/rhMapZfishInfo.h	6;"	d
RHMAPZFISHINFO_NUM_COLS	hg/inc/rhMapZfishInfo.h	8;"	d
RIKENBEST_H	hg/inc/rikenBest.h	6;"	d
RIKENCLUSTER_H	hg/inc/rikenCluster.h	6;"	d
RIKEN_H	hg/inc/riken.h	3;"	d
RLE_H	inc/rle.h	7;"	d
RMSKOUT_H	hg/inc/rmskOut.h	6;"	d
RNAFOLD_H	hg/inc/rnaFold.h	6;"	d
RNAFOLD_NUM_COLS	hg/inc/rnaFold.h	8;"	d
RNAGENES_H	hg/inc/rnaGenes.h	6;"	d
RNAGENES_NUM_COLS	hg/inc/rnaGenes.h	8;"	d
RNAGENE_H	hg/inc/rnaGene.h	6;"	d
RNAGROUP_H	hg/inc/rnaGroup.h	6;"	d
RNAHYBRIDIZATION_H	hg/inc/rnaHybridization.h	6;"	d
RNAHYBRIDIZATION_NUM_COLS	hg/inc/rnaHybridization.h	12;"	d
RNAPLFOLD_DIAGDARK	hg/inc/rnaPLFold.h	64;"	d
RNAPLFOLD_DIAGDARK_DEF	hg/inc/rnaPLFold.h	65;"	d
RNAPLFOLD_DIAGLIGHT	hg/inc/rnaPLFold.h	66;"	d
RNAPLFOLD_DIAGLIGHT_DEF	hg/inc/rnaPLFold.h	67;"	d
RNAPLFOLD_H	hg/inc/rnaPLFold.h	6;"	d
RNAPLFOLD_INVERT	hg/inc/rnaPLFold.h	70;"	d
RNAPLFOLD_INVERT_BUTTOM	hg/inc/rnaPLFold.h	72;"	d
RNAPLFOLD_INVERT_DEF	hg/inc/rnaPLFold.h	73;"	d
RNAPLFOLD_INVERT_TOP	hg/inc/rnaPLFold.h	71;"	d
RNAPLFOLD_MAXBPDISTANCE	hg/inc/rnaPLFold.h	68;"	d
RNAPLFOLD_MAXBPDISTANCE_DEF	hg/inc/rnaPLFold.h	69;"	d
RNAPLFOLD_NUM_COLS	hg/inc/rnaPLFold.h	8;"	d
RNASECSTR_H	hg/inc/rnaSecStr.h	6;"	d
RNASECSTR_NUM_COLS	hg/inc/rnaSecStr.h	8;"	d
RNAUTIL_H	inc/rnautil.h	3;"	d
RNA_PAIRS	lib/rnautil.c	/^const char *RNA_PAIRS[] = {"AU","UA","GC","CG","GU","UG",0};$/;"	v
ROUGHALI_H	hg/inc/roughAli.h	6;"	d
RQL_H	inc/rql.h	5;"	d
RTChestW	hg/inc/ispyTables.h	/^    char *RTChestW;	\/* Radiation to Chest Wall *\/$/;"	m	struct:followUp
RUDP_H	inc/rudp.h	51;"	d
RULER_BASE_ZOOM_VAR	hg/inc/hui.h	110;"	d
RULER_TRACK_LABEL	hg/inc/hui.h	69;"	d
RULER_TRACK_LONGLABEL	hg/inc/hui.h	70;"	d
RULER_TRACK_NAME	hg/inc/hui.h	68;"	d
Race_id	hg/inc/ispyTables.h	/^    char *Race_id;	\/* Patient Race (1 case is 136 for white, black and American Indian or Alaska Native) *\/$/;"	m	struct:patientInfo
ReasonNoSurg	hg/inc/ispyTables.h	/^    char *ReasonNoSurg;	\/* Principal Reason Breast Conserving Surgery Not Performed *\/$/;"	m	struct:postSurgery
ResGetter	hg/lib/jksql.c	/^typedef MYSQL_RES *	STDCALL ResGetter(MYSQL *mysql);$/;"	t	file:
RqlEvalLookup	inc/rql.h	/^typedef char* (*RqlEvalLookup)(void *record, char *key);$/;"	t
RtAxilla	hg/inc/ispyTables.h	/^    char *RtAxilla;	\/* Radiation to Axilla *\/$/;"	m	struct:followUp
RtBoost	hg/inc/ispyTables.h	/^    char *RtBoost;	\/* Radiation to Boost *\/$/;"	m	struct:followUp
RtBreast	hg/inc/ispyTables.h	/^    char *RtBreast;	\/* Radiation to Breast *\/$/;"	m	struct:followUp
RtIMamNode	hg/inc/ispyTables.h	/^    char *RtIMamNode;	\/* Radiation to Internal Mammary node *\/$/;"	m	struct:followUp
RtOther	hg/inc/ispyTables.h	/^    char *RtOther;	\/* Radiation to Other Site *\/$/;"	m	struct:followUp
RtSNode	hg/inc/ispyTables.h	/^    char *RtSNode;	\/* Radiation to Supraclavicular node *\/$/;"	m	struct:followUp
RtTherapy	hg/inc/ispyTables.h	/^    char *RtTherapy;	\/* Has patient received adjuvant radiation therapy (prior to treatment failure or second primary cancer)?  *\/$/;"	m	struct:followUp
S	lib/md5.c	57;"	d	file:
SAGECOUNTS_H	hg/inc/sageCounts.h	6;"	d
SAGEEXP_H	hg/inc/sageExp.h	6;"	d
SAGE_H	hg/inc/sage.h	6;"	d
SAMALIGNMENT_H	hg/inc/samAlignment.h	6;"	d
SAMALIGNMENT_NUM_COLS	hg/inc/samAlignment.h	10;"	d
SAMPLE_H	hg/inc/sample.h	6;"	d
SANDBOX_TDB_ROOT	hg/lib/mdb.c	927;"	d	file:
SANGER22EXTRA_H	hg/inc/sanger22extra.h	6;"	d
SANGERGENETOWBGENEID_H	hg/inc/sangerGeneToWBGeneID.h	6;"	d
SANGERGENETOWBGENEID_NUM_COLS	hg/inc/sangerGeneToWBGeneID.h	12;"	d
SANGERGENE_H	hg/inc/sangerGene.h	6;"	d
SANGERGENE_NUM_COLS	hg/inc/sangerGene.h	8;"	d
SARGASSOSEAXRA_H	hg/inc/sargassoSeaXra.h	6;"	d
SARGASSOSEAXRA_NUM_COLS	hg/inc/sargassoSeaXra.h	8;"	d
SCALE_BAR_LABEL	hg/inc/hui.h	71;"	d
SCHEMA_LINKED	hg/lib/hui.c	122;"	d	file:
SCOPDES_H	hg/inc/scopDes.h	6;"	d
SCOPDES_NUM_COLS	hg/inc/scopDes.h	8;"	d
SCOREDREF_H	hg/inc/scoredRef.h	6;"	d
SCOREDREF_NUM_COLS	hg/inc/scoredRef.h	8;"	d
SCORE_COLORS	hg/inc/chainCart.h	16;"	d
SCORE_FILTER	hg/inc/hui.h	994;"	d
SCORE_MIN	hg/inc/hui.h	1003;"	d
SEARCH_H	hg/inc/search.h	4;"	d
SEEK_CUR	inc/common.h	1016;"	d
SEEK_END	inc/common.h	1020;"	d
SEEK_SET	inc/common.h	1012;"	d
SEG_H	inc/seg.h	3;"	d
SELTIMEOUT	lib/net.c	1953;"	d	file:
SEQSTATS_H	inc/seqStats.h	5;"	d
SEQ_TBL_SET	hg/lib/hdb.c	1275;"	d	file:
SETTING_IS_OFF	inc/common.h	1390;"	d
SETTING_IS_ON	inc/common.h	1388;"	d
SETTING_NOT_ON	inc/common.h	1389;"	d
SET_TO_NO	inc/common.h	1406;"	d
SET_TO_YES	inc/common.h	1405;"	d
SGDABUNDANCE_H	hg/inc/sgdAbundance.h	6;"	d
SGDABUNDANCE_NUM_COLS	hg/inc/sgdAbundance.h	8;"	d
SGDCLONE_H	hg/inc/sgdClone.h	6;"	d
SGDCLONE_NUM_COLS	hg/inc/sgdClone.h	8;"	d
SGDDESCRIPTION_H	hg/inc/sgdDescription.h	6;"	d
SGDDESCRIPTION_NUM_COLS	hg/inc/sgdDescription.h	8;"	d
SGDOTHER_H	hg/inc/sgdOther.h	6;"	d
SGDOTHER_NUM_COLS	hg/inc/sgdOther.h	8;"	d
SHARES_H	inc/shaRes.h	7;"	d
SHOW_DIFF_BASES_ALL_SCALES	hg/inc/hui.h	651;"	d
SHOW_FOLDER_FRO_COMPOSITE_DOWNLOADS	hg/lib/fileUi.c	704;"	d	file:
SIG	lib/dnaMarkov.c	177;"	d	file:
SIGNAL_FILTER	hg/inc/hui.h	995;"	d
SIG_H	inc/sig.h	8;"	d
SIMPLENUCDIFF_NUM_COLS	hg/inc/simpleNucDiff.h	8;"	d
SIMPLEREPEAT_H	hg/inc/simpleRepeat.h	6;"	d
SINEpercent	hg/inc/cnpSharp.h	/^    float SINEpercent;	\/* 0 to 1 *\/$/;"	m	struct:cnpSharp
SINGLENUCDIFF_H	hg/inc/simpleNucDiff.h	6;"	d
SLOG_H	inc/slog.h	3;"	d
SMALLBUF	hg/lib/hui.c	41;"	d	file:
SMOOTHINGWINDOW	hg/inc/wiggle.h	277;"	d
SNORNAS_H	hg/inc/snoRNAs.h	6;"	d
SNORNAS_H	hg/lib/snoRNAs.h	6;"	d
SNORNAS_NUM_COLS	hg/inc/snoRNAs.h	8;"	d
SNORNAS_NUM_COLS	hg/lib/snoRNAs.h	8;"	d
SNP125CODINGCOORDLESS_H	hg/inc/snp125CodingCoordless.h	6;"	d
SNP125CODINGCOORDLESS_NUM_COLS	hg/inc/snp125CodingCoordless.h	8;"	d
SNP125EXCEPTIONS_H	hg/inc/snp125Exceptions.h	6;"	d
SNP125EXCEPTIONS_NUM_COLS	hg/inc/snp125Exceptions.h	8;"	d
SNP125UI_H	hg/inc/snp125Ui.h	5;"	d
SNP125_DEFAULT_COLOR_SOURCE	hg/inc/snp125Ui.h	57;"	d
SNP125_DEFAULT_MAX_WEIGHT	hg/inc/snp125Ui.h	23;"	d
SNP125_DEFAULT_MIN_AVHET	hg/inc/snp125Ui.h	24;"	d
SNP125_H	hg/inc/snp125.h	6;"	d
SNP125_NUM_COLS	hg/inc/snp125.h	9;"	d
SNP132EXT_H	hg/inc/snp132Ext.h	6;"	d
SNP132EXT_NUM_COLS	hg/inc/snp132Ext.h	8;"	d
SNP132_DEFAULT_MAX_MINOR_AL_FREQ	hg/inc/snp125Ui.h	27;"	d
SNP132_DEFAULT_MIN_AL_FREQ_2N	hg/inc/snp125Ui.h	28;"	d
SNP132_DEFAULT_MIN_MINOR_AL_FREQ	hg/inc/snp125Ui.h	26;"	d
SNP132_DEFAULT_MIN_SUBMITTERS	hg/inc/snp125Ui.h	25;"	d
SNPEXCEPTIONS_H	hg/inc/snpExceptions.h	6;"	d
SNPEXCEPTIONS_NUM_COLS	hg/inc/snpExceptions.h	12;"	d
SNPEXTFILE_H	hg/inc/snpExtFile.h	6;"	d
SNPEXTFILE_NUM_COLS	hg/inc/snpExtFile.h	8;"	d
SNPFASTA_H	hg/inc/snpFasta.h	6;"	d
SNPFASTA_NUM_COLS	hg/inc/snpFasta.h	8;"	d
SNPMAP_H	hg/inc/snpMap.h	6;"	d
SNPMAP_NUM_COLS	hg/inc/snpMap.h	12;"	d
SNPSEQ_H	hg/inc/snpSeq.h	6;"	d
SNPSEQ_NUM_COLS	hg/inc/snpSeq.h	8;"	d
SNPTMP_H	hg/inc/snpTmp.h	6;"	d
SNPTMP_NUM_COLS	hg/inc/snpTmp.h	8;"	d
SNPUI_H	hg/inc/snpUi.h	3;"	d
SNP_H	hg/inc/snp.h	6;"	d
SNP_NUM_COLS	hg/inc/snp.h	12;"	d
SNPalleles	hg/inc/genotype.h	/^    char SNPalleles[4];	\/*  SNPalleles	# A\/C *\/$/;"	m	struct:genotype
SOFTBERRYHOM_H	hg/inc/softberryHom.h	6;"	d
SOFTPROMOTER_H	hg/inc/softPromoter.h	6;"	d
SOLO_NODE	hg/inc/trackDb.h	98;"	d
SORT_ON_RESTRICTED	hg/lib/hui.c	2977;"	d	file:
SORT_ON_TRACK_NAME	hg/lib/hui.c	2976;"	d	file:
SOTERM_H	hg/inc/soterm.h	4;"	d
SPACEDCOLUMN_H	inc/spacedColumn.h	5;"	d
SPACEDSEED_H	inc/spacedSeed.h	4;"	d
SPACESAVER_H	inc/spaceSaver.h	10;"	d
SPANLIST	hg/inc/wiggle.h	280;"	d
SPDB_H	hg/inc/spDb.h	15;"	d
SPECIES_CODON_DEFAULT	hg/inc/hgMaf.h	18;"	d
SPECIES_DEFAULT_OFF_VAR	hg/inc/hgMaf.h	15;"	d
SPECIES_GROUP_PREFIX	hg/inc/hgMaf.h	16;"	d
SPECIES_GROUP_VAR	hg/inc/hgMaf.h	13;"	d
SPECIES_HTML_TARGET	hg/inc/hgMaf.h	17;"	d
SPECIES_ORDER_VAR	hg/inc/hgMaf.h	12;"	d
SPECIES_TARGET_VAR	hg/inc/hgMaf.h	14;"	d
SPECIES_TREE_VAR	hg/inc/hgMaf.h	11;"	d
SPECIES_USE_FILE	hg/inc/hgMaf.h	19;"	d
SPLATALI_H	inc/splatAli.h	8;"	d
SPLATALI_NUM_COLS	inc/splatAli.h	10;"	d
SPLIGNALIGN_H	hg/inc/splignAlign.h	6;"	d
SPLIGNALIGN_NUM_COLS	hg/inc/splignAlign.h	8;"	d
SPLIX_H	inc/splix.h	7;"	d
SPLIX_MAGIC	inc/splix.h	76;"	d
SPLIX_MAJOR_VERSION	inc/splix.h	77;"	d
SPLIX_MINOR_VERSION	inc/splix.h	78;"	d
SQLLIST_H	inc/sqlList.h	7;"	d
SQLNUM_H	inc/sqlNum.h	15;"	d
SQLPROG_H	hg/inc/sqlProg.h	4;"	d
SQL_TAB_FILE_CONCURRENT	hg/inc/jksql.h	184;"	d
SQL_TAB_FILE_ON_SERVER	hg/inc/jksql.h	178;"	d
SQL_TAB_FILE_WARN_ON_ERROR	hg/inc/jksql.h	182;"	d
SQL_TAB_FILE_WARN_ON_WARN	hg/inc/jksql.h	180;"	d
SQL_TAB_REPLACE	hg/inc/jksql.h	189;"	d
SQL_TAB_TRANSACTION_SAFE	hg/inc/jksql.h	186;"	d
SS	lib/mafScore.c	17;"	d	file:
STACK_LIMIT	lib/errabort.c	88;"	d	file:
STANMAD_H	hg/inc/stanMad.h	6;"	d
STATE	lib/oligoTm.c	172;"	d	file:
STNADARD_AA_ALPHABET	hg/inc/pbCommon.h	19;"	d
STPROP	lib/gemfont.h	49;"	d
STSALIAS_H	hg/inc/stsAlias.h	6;"	d
STSINFO2_H	hg/inc/stsInfo2.h	6;"	d
STSINFOMOUSENEW_H	hg/inc/stsInfoMouseNew.h	6;"	d
STSINFOMOUSENEW_NUM_COLS	hg/inc/stsInfoMouseNew.h	8;"	d
STSINFOMOUSE_H	hg/inc/stsInfoMouse.h	6;"	d
STSINFORAT_H	hg/inc/stsInfoRat.h	6;"	d
STSINFO_H	hg/inc/stsInfo.h	6;"	d
STSMAPMOUSENEW_H	hg/inc/stsMapMouseNew.h	6;"	d
STSMAPMOUSENEW_NUM_COLS	hg/inc/stsMapMouseNew.h	8;"	d
STSMAPMOUSE_H	hg/inc/stsMapMouse.h	6;"	d
STSMAPRAT_H	hg/inc/stsMapRat.h	6;"	d
STSMAP_H	hg/inc/stsMap.h	6;"	d
STSMARKER_H	hg/inc/stsMarker.h	6;"	d
SUBGROUP_MAX	hg/lib/hui.c	2280;"	d	file:
SUBTEXT_H	inc/subText.h	7;"	d
SUBTRACK_CFG	hg/inc/hui.h	13;"	d
SUBTRACK_CFG_VIS	hg/lib/hui.c	4163;"	d	file:
SUBTRACK_CFG_WRENCH	hg/lib/hui.c	4167;"	d	file:
SUFA_H	inc/sufa.h	7;"	d
SUFA_MAGIC	inc/sufa.h	56;"	d
SUFA_MAJOR_VERSION	inc/sufa.h	57;"	d
SUFA_MINOR_VERSION	inc/sufa.h	58;"	d
SUFX_H	inc/sufx.h	9;"	d
SUFX_MAGIC	inc/sufx.h	60;"	d
SUFX_MAJOR_VERSION	inc/sufx.h	61;"	d
SUFX_MINOR_VERSION	inc/sufx.h	62;"	d
SUGGEST_H	hg/inc/suggest.h	4;"	d
SUMMARY_VAR	hg/inc/hgMaf.h	22;"	d
SUPERTRACK_DEFAULT_VIS	hg/inc/hui.h	210;"	d
SUPSTITCH_H	inc/supStitch.h	13;"	d
SWITCHDBTSS_FILTER	hg/inc/hui.h	140;"	d
SWITCHDBTSS_H	hg/inc/switchDbTss.h	6;"	d
SWITCHDBTSS_NUM_COLS	hg/inc/switchDbTss.h	8;"	d
SYNMAP_H	hg/inc/synMap.h	6;"	d
SYNQUEUE_H	inc/synQueue.h	5;"	d
SYNTENY100000_H	hg/inc/synteny100000.h	6;"	d
SYNTENYBERK_H	hg/inc/syntenyBerk.h	6;"	d
SYNTENYSANGER_H	hg/inc/syntenySanger.h	6;"	d
S_A_A	lib/oligoTm.c	65;"	d	file:
S_A_C	lib/oligoTm.c	66;"	d	file:
S_A_G	lib/oligoTm.c	67;"	d	file:
S_A_N	lib/oligoTm.c	69;"	d	file:
S_A_T	lib/oligoTm.c	68;"	d	file:
S_C_A	lib/oligoTm.c	71;"	d	file:
S_C_C	lib/oligoTm.c	72;"	d	file:
S_C_G	lib/oligoTm.c	73;"	d	file:
S_C_N	lib/oligoTm.c	75;"	d	file:
S_C_T	lib/oligoTm.c	74;"	d	file:
S_G_A	lib/oligoTm.c	77;"	d	file:
S_G_C	lib/oligoTm.c	78;"	d	file:
S_G_G	lib/oligoTm.c	79;"	d	file:
S_G_N	lib/oligoTm.c	81;"	d	file:
S_G_T	lib/oligoTm.c	80;"	d	file:
S_N_A	lib/oligoTm.c	89;"	d	file:
S_N_C	lib/oligoTm.c	90;"	d	file:
S_N_G	lib/oligoTm.c	91;"	d	file:
S_N_N	lib/oligoTm.c	93;"	d	file:
S_N_T	lib/oligoTm.c	92;"	d	file:
S_T_A	lib/oligoTm.c	83;"	d	file:
S_T_C	lib/oligoTm.c	84;"	d	file:
S_T_G	lib/oligoTm.c	85;"	d	file:
S_T_N	lib/oligoTm.c	87;"	d	file:
S_T_T	lib/oligoTm.c	86;"	d	file:
SentinelNodeResult	hg/inc/ispyTables.h	/^    char *SentinelNodeResult;	\/* Sentinel Node Biopsy Results pretreatment *\/$/;"	m	struct:onStudy
SentinelNodeSample	hg/inc/ispyTables.h	/^    char *SentinelNodeSample;	\/* Was Sentinel node sampling performed pre-treatment? *\/$/;"	m	struct:onStudy
Sn3pSc	hg/inc/llaInfo.h	/^    float Sn3pSc;	\/* Sense primer 3-prime self-complementarity score *\/$/;"	m	struct:llaInfo
SnGc	hg/inc/llaInfo.h	/^    float SnGc;	\/* Sense primer annealing temp *\/$/;"	m	struct:llaInfo
SnSc	hg/inc/llaInfo.h	/^    float SnSc;	\/* Sense primer self-complementarity score *\/$/;"	m	struct:llaInfo
SnSeq	hg/inc/llaInfo.h	/^    char *SnSeq;	\/* Sense primer sequence *\/$/;"	m	struct:llaInfo
SnTm	hg/inc/llaInfo.h	/^    float SnTm;	\/* Sense primer annealing temp *\/$/;"	m	struct:llaInfo
SpAcc	hg/inc/spDb.h	/^typedef char SpAcc[12];	\/* Enough space for accession and 0 terminator. *\/$/;"	t
Sstat	hg/inc/ispyTables.h	/^    char *Sstat;	\/* Survival Status *\/$/;"	m	struct:patientInfo
StageMe	hg/inc/ispyTables.h	/^    char *StageMe;	\/* Disease Stage M (metastasis) Baseline *\/$/;"	m	struct:respEval
StageNe	hg/inc/ispyTables.h	/^    char *StageNe;	\/* Disease Stage N (metastasis) Baseline *\/$/;"	m	struct:respEval
StageTe	hg/inc/ispyTables.h	/^    char *StageTe;	\/* Disease Stage T (metastasis) Baseline *\/$/;"	m	struct:respEval
Surgery	hg/inc/ispyTables.h	/^    char *Surgery;	\/* Did patient have extensive Primary Surgery immediately following chemotherapy? *\/$/;"	m	struct:postSurgery
SurgeryLumpectomy	hg/inc/ispyTables.h	/^    char *SurgeryLumpectomy;	\/* Surgery Procedure Performed was Partial mastectomy\/lumpectomy\/excisional biopsy *\/$/;"	m	struct:postSurgery
SurgeryMastectomy	hg/inc/ispyTables.h	/^    char *SurgeryMastectomy;	\/* SurgeryMastectomy Surgery Procedure Performed was Mastectomy, NOS *\/$/;"	m	struct:postSurgery
SurvDtD	hg/inc/ispyTables.h	/^    int *SurvDtD;	\/* Survival date (time from study entry to death or last follow-up) *\/$/;"	m	struct:patientInfo
T	hg/inc/simpleRepeat.h	/^    unsigned T;	\/* Number of T's in repeat unit *\/$/;"	m	struct:simpleRepeat
TABLEDESCRIPTIONS_H	hg/inc/tableDescriptions.h	6;"	d
TABLEDESCRIPTIONS_NUM_COLS	hg/inc/tableDescriptions.h	8;"	d
TABLESTATUS_H	hg/inc/tableStatus.h	6;"	d
TABLESTATUS_NUM_COLS	hg/inc/tableStatus.h	8;"	d
TABLE_SIZE	lib/gifcomp.c	64;"	d	file:
TABROW_H	inc/tabRow.h	6;"	d
TAGALIGN_H	hg/inc/tagAlign.h	6;"	d
TAGALIGN_NUM_COLS	hg/inc/tagAlign.h	8;"	d
TARGETDB_H	hg/inc/targetDb.h	6;"	d
TARGETDB_NUM_COLS	hg/inc/targetDb.h	8;"	d
TAXONDIVISION_H	hg/inc/taxonDivision.h	6;"	d
TAXONDIVISION_NUM_COLS	hg/inc/taxonDivision.h	12;"	d
TAXONGENETICCODE_H	hg/inc/taxonGeneticCode.h	6;"	d
TAXONGENETICCODE_NUM_COLS	hg/inc/taxonGeneticCode.h	12;"	d
TAXONNAME_H	hg/inc/taxonName.h	6;"	d
TAXONNAME_NUM_COLS	hg/inc/taxonName.h	12;"	d
TAXONNODE_H	hg/inc/taxonNode.h	6;"	d
TAXONNODE_NUM_COLS	hg/inc/taxonNode.h	12;"	d
TAXONXREF_H	hg/inc/taxonXref.h	6;"	d
TAXONXREF_NUM_COLS	hg/inc/taxonXref.h	12;"	d
TDB_EXTRAS_EMPTY_STATE	hg/inc/trackDb.h	540;"	d
TDB_GRAY_SCALE	hg/inc/netCart.h	12;"	d
TEST_EMAIL_VERIFIED	hg/inc/wikiTrack.h	143;"	d
TEXTOUT_H	inc/textOut.h	4;"	d
TFBSCONSFACTORS_H	hg/inc/tfbsConsFactors.h	6;"	d
TFBSCONSFACTORS_NUM_COLS	hg/inc/tfbsConsFactors.h	8;"	d
TFBSCONSMAP_H	hg/inc/tfbsConsMap.h	6;"	d
TFBSCONSMAP_NUM_COLS	hg/inc/tfbsConsMap.h	12;"	d
TFBSCONSSITES_H	hg/inc/tfbsConsSites.h	6;"	d
TFBSCONSSITES_NUM_COLS	hg/inc/tfbsConsSites.h	8;"	d
TFBSCONS_H	hg/inc/tfbsCons.h	6;"	d
TFBSCONS_NUM_COLS	hg/inc/tfbsCons.h	12;"	d
TFBS_SITES_CUTOFF	hg/inc/tfbsConsSites.h	67;"	d
TFBS_SITES_CUTOFF_DEFAULT	hg/inc/tfbsConsSites.h	68;"	d
TFBS_SITES_CUTOFF_MINIMUM	hg/inc/tfbsConsSites.h	69;"	d
TF_binding_site_variant	hg/inc/soterm.h	/^    TF_binding_site_variant=1782,$/;"	e	enum:__anon11
TIGRCMRGENE_H	hg/inc/tigrCmrGene.h	6;"	d
TIGRCMRGENE_NUM_COLS	hg/inc/tigrCmrGene.h	12;"	d
TIGROPERON_H	hg/inc/tigrOperon.h	6;"	d
TIGROPERON_NUM_COLS	hg/inc/tigrOperon.h	8;"	d
TILINGPATH_H	hg/inc/tilingPath.h	6;"	d
TIME_FORMAT_SIZE	hg/lib/visiGene.c	123;"	d	file:
TOKENIZER_H	inc/tokenizer.h	7;"	d
TOO_HIGH	lib/gifcodes.h	45;"	d
TRACEINFO_H	hg/inc/traceInfo.h	6;"	d
TRACE_LEVEL	lib/blastParse.c	13;"	d	file:
TRACKDB_H	hg/inc/trackDb.h	6;"	d
TRACKDB_NUM_COLS	hg/inc/trackDb.h	24;"	d
TRACKHUB_H	hg/inc/trackHub.h	19;"	d
TRACKLAYOUT_H	hg/inc/trackLayout.h	5;"	d
TRACKTABLE_H	hg/inc/trackTable.h	6;"	d
TRACKVERSION_H	hg/inc/trackVersion.h	6;"	d
TRACKVERSION_NUM_COLS	hg/inc/trackVersion.h	12;"	d
TRACK_SEARCH	hg/inc/search.h	10;"	d
TRACK_SEARCH_ADD_ROW	hg/inc/search.h	12;"	d
TRACK_SEARCH_BUTTON	hg/inc/search.h	14;"	d
TRACK_SEARCH_DEL_ROW	hg/inc/search.h	13;"	d
TRACK_SEARCH_HINT	hg/inc/search.h	15;"	d
TRACK_SEARCH_PAGER	hg/inc/search.h	11;"	d
TRANS3_H	inc/trans3.h	13;"	d
TRANSFORMFUNC	hg/inc/wiggle.h	268;"	d
TRANSMAPGENE_H	hg/inc/transMapGene.h	6;"	d
TRANSMAPGENE_NUM_COLS	hg/inc/transMapGene.h	8;"	d
TRANSMAPINFO_H	hg/inc/transMapInfo.h	6;"	d
TRANSMAPINFO_NUM_COLS	hg/inc/transMapInfo.h	8;"	d
TRANSMAPSRC_H	hg/inc/transMapSrc.h	6;"	d
TRANSMAPSRC_NUM_COLS	hg/inc/transMapSrc.h	8;"	d
TRANSREGCODECONDITION_H	hg/inc/transRegCodeCondition.h	6;"	d
TRANSREGCODECONDITION_NUM_COLS	hg/inc/transRegCodeCondition.h	8;"	d
TRANSREGCODEPROBE_H	hg/inc/transRegCodeProbe.h	6;"	d
TRANSREGCODEPROBE_NUM_COLS	hg/inc/transRegCodeProbe.h	8;"	d
TRANSREGCODE_H	hg/inc/transRegCode.h	6;"	d
TRANSREGCODE_NUM_COLS	hg/inc/transRegCode.h	8;"	d
TRASHDIR_H	hg/inc/trashDir.h	4;"	d
TREETYPE_MASK	hg/inc/trackDb.h	85;"	d
TRNAS_H	hg/inc/tRNAs.h	6;"	d
TRNAS_NUM_COLS	hg/inc/tRNAs.h	8;"	d
TRUE	inc/common.h	96;"	d
TSizeClinical	hg/inc/ispyTables.h	/^    float *TSizeClinical;	\/* Size of Primary Tumor (cm) - Clinical Assessment at Baseline *\/$/;"	m	struct:respEval
TV_DROPDOWN_STYLE	hg/inc/hui.h	192;"	d
TWOBIT_H	inc/twoBit.h	6;"	d
TXCLUSTER_H	hg/inc/txCluster.h	6;"	d
TXCLUSTER_NUM_COLS	hg/inc/txCluster.h	8;"	d
TXCOMMON_H	hg/inc/txCommon.h	5;"	d
TXEDGEBED_H	hg/inc/txEdgeBed.h	6;"	d
TXEDGEBED_NUM_COLS	hg/inc/txEdgeBed.h	8;"	d
TXEDGEORTHO_H	hg/inc/txEdgeOrtho.h	6;"	d
TXEDGEORTHO_NUM_COLS	hg/inc/txEdgeOrtho.h	8;"	d
TXEDGE_NUM_COLS	hg/inc/txGraph.h	87;"	d
TXEVIDENCE_NUM_COLS	hg/inc/txGraph.h	121;"	d
TXGRAPH_H	hg/inc/txGraph.h	6;"	d
TXGRAPH_NUM_COLS	hg/inc/txGraph.h	8;"	d
TXINFO_H	hg/inc/txInfo.h	6;"	d
TXINFO_NUM_COLS	hg/inc/txInfo.h	8;"	d
TXRNAACCS_H	hg/inc/txRnaAccs.h	6;"	d
TXRNAACCS_NUM_COLS	hg/inc/txRnaAccs.h	8;"	d
TXSOURCE_NUM_COLS	hg/inc/txGraph.h	153;"	d
TXVERTEX_NUM_COLS	hg/inc/txGraph.h	64;"	d
T_BASE_VAL	inc/dnautil.h	23;"	d
T_CHAR	lib/oligoTm.c	159;"	d	file:
Tam	hg/inc/ispyTables.h	/^    char *Tam;	\/* Tamoxifen received *\/$/;"	m	struct:chemo
TextBlit	inc/memgfx.h	/^typedef void (*TextBlit)(int bitWidth, int bitHeight, int bitX, int bitY,$/;"	t
UBYTE	inc/common.h	106;"	d
UBYTE	lib/gifcomp.c	60;"	d	file:
UCSCRETROINFO_H	hg/inc/ucscRetroInfo.h	6;"	d
UCSCRETROINFO_NUM_COLS	hg/inc/ucscRetroInfo.h	9;"	d
UCSCRETROORTHO_H	hg/inc/ucscRetroOrtho.h	6;"	d
UCSCRETROORTHO_NUM_COLS	hg/inc/ucscRetroOrtho.h	9;"	d
UCSC_TO_ENSEMBL	hg/inc/ensFace.h	16;"	d
UCSF_DEMO_ER	hg/inc/expRecord.h	93;"	d
UCSF_DEMO_ER_DEFAULT	hg/inc/expRecord.h	94;"	d
UCSF_DEMO_PR	hg/inc/expRecord.h	95;"	d
UCSF_DEMO_PR_DEFAULT	hg/inc/expRecord.h	96;"	d
UDC_H	inc/udc.h	24;"	d
UNFIN_H	inc/unfin.h	8;"	d
UNIPROT_DB_NAME	hg/inc/spDb.h	21;"	d
UPDATE_RADIO_FORMAT	hg/lib/hui.c	6080;"	d	file:
UPDIR	lib/mgPolygon.c	38;"	d	file:
USER_CONFIG_FILE	hg/lib/hgConfig.c	19;"	d	file:
USER_PREFERENCES_MESSAGE	hg/inc/wikiTrack.h	146;"	d
USER_PSL_TRACK_LABEL	hg/inc/hui.h	92;"	d
USER_PSL_TRACK_LONGLABEL	hg/inc/hui.h	93;"	d
USER_PSL_TRACK_NAME	hg/inc/hui.h	91;"	d
USE_ITEM_RGB	hg/inc/bedCart.h	7;"	d
UWORD	inc/common.h	108;"	d
U_BASE_VAL	inc/dnautil.h	24;"	d
UdcDataCallback	lib/udc.c	/^typedef int (*UdcDataCallback)(char *url, bits64 offset, int size, void *buffer,$/;"	t	file:
UdcInfoCallback	lib/udc.c	/^typedef boolean (*UdcInfoCallback)(char *url, struct udcRemoteFileInfo *retInfo);$/;"	t	file:
UiStsId	hg/inc/stsInfoMouseNew.h	/^    unsigned UiStsId;	\/* Marker's UiStsId *\/$/;"	m	struct:stsInfoMouseNew
UiStsId	hg/inc/stsInfoRat.h	/^    unsigned UiStsId;	\/* Marker's UiStsId *\/$/;"	m	struct:stsInfoRat
VARIANT_H	hg/inc/variant.h	5;"	d
VARIOME_H	hg/inc/variome.h	6;"	d
VARIOME_NUM_COLS	hg/inc/variome.h	12;"	d
VCFUI_H	hg/inc/vcfUi.h	4;"	d
VCF_APPLY_MIN_QUAL_VAR	hg/inc/vcfUi.h	26;"	d
VCF_DEFAULT_APPLY_MIN_QUAL	hg/inc/vcfUi.h	27;"	d
VCF_DEFAULT_HAP_COLORBY	hg/inc/vcfUi.h	19;"	d
VCF_DEFAULT_HAP_HEIGHT	hg/inc/vcfUi.h	11;"	d
VCF_DEFAULT_HAP_TREEANGLE	hg/inc/vcfUi.h	24;"	d
VCF_DEFAULT_MIN_ALLELE_FREQ	hg/inc/vcfUi.h	35;"	d
VCF_DEFAULT_MIN_QUAL	hg/inc/vcfUi.h	30;"	d
VCF_EXCLUDE_FILTER_VAR	hg/inc/vcfUi.h	32;"	d
VCF_HAPLOSORT_DEFAULT_DESC	hg/lib/vcfUi.c	25;"	d	file:
VCF_HAP_COLORBY_ALTONLY	hg/inc/vcfUi.h	16;"	d
VCF_HAP_COLORBY_BASE	hg/inc/vcfUi.h	18;"	d
VCF_HAP_COLORBY_REFALT	hg/inc/vcfUi.h	17;"	d
VCF_HAP_COLORBY_VAR	hg/inc/vcfUi.h	15;"	d
VCF_HAP_ENABLED_VAR	hg/inc/vcfUi.h	13;"	d
VCF_HAP_HEIGHT_VAR	hg/inc/vcfUi.h	10;"	d
VCF_HAP_TREEANGLE_RECTANGLE	hg/inc/vcfUi.h	23;"	d
VCF_HAP_TREEANGLE_TRIANGLE	hg/inc/vcfUi.h	22;"	d
VCF_HAP_TREEANGLE_VAR	hg/inc/vcfUi.h	21;"	d
VCF_MAX_ALLELE_LEN	hg/lib/pgSnp.c	721;"	d	file:
VCF_MAX_COLUMNS	lib/vcf.c	373;"	d	file:
VCF_MAX_FORMAT	lib/vcf.c	828;"	d	file:
VCF_MAX_FORMAT_LEN	lib/vcf.c	829;"	d	file:
VCF_MAX_INFO	lib/vcf.c	465;"	d	file:
VCF_MIN_ALLELE_FREQ_VAR	hg/inc/vcfUi.h	34;"	d
VCF_MIN_QUAL_VAR	hg/inc/vcfUi.h	29;"	d
VCF_NUM_COLS	inc/vcf.h	227;"	d
VEGAINFOZFISH_H	hg/inc/vegaInfoZfish.h	6;"	d
VEGAINFOZFISH_NUM_COLS	hg/inc/vegaInfoZfish.h	8;"	d
VEGAINFO_H	hg/inc/vegaInfo.h	6;"	d
VERBOSE_ALWAYS_ON	hg/inc/wiggle.h	462;"	d
VERBOSE_CHR_LEVEL	hg/inc/wiggle.h	463;"	d
VERBOSE_H	inc/verbose.h	5;"	d
VERBOSE_HIGHEST	hg/inc/wiggle.h	466;"	d
VERBOSE_PER_VALUE_LEVEL	hg/inc/wiggle.h	465;"	d
VERBOSE_SQL_ROW_LEVEL	hg/inc/wiggle.h	464;"	d
VGFX_H	inc/vGfx.h	6;"	d
VIEWLIMITS	hg/inc/wiggle.h	257;"	d
VIEWLIMITSMAX	hg/inc/wiggle.h	259;"	d
VISIGENE_H	hg/inc/visiGene.h	6;"	d
VNTR_H	hg/inc/vntr.h	6;"	d
VNTR_NUM_COLS	hg/inc/vntr.h	8;"	d
VOCAB_LINK	hg/lib/hui.c	142;"	d	file:
VOCAB_LINK_WITH_FILE	hg/lib/hui.c	141;"	d	file:
VOCAB_MULTILINK_BEG	hg/lib/hui.c	6694;"	d	file:
VOCAB_MULTILINK_END	hg/lib/hui.c	6695;"	d	file:
WABALI_H	hg/inc/wabAli.h	6;"	d
WARN	hg/lib/cart.c	2031;"	d	file:
WARN	hg/lib/cart.c	2034;"	d	file:
WARN_LEVEL	lib/blastParse.c	12;"	d	file:
WBGeneID	hg/inc/sangerGeneToWBGeneID.h	/^    char *WBGeneID;	\/* WormBase Gene ID *\/$/;"	m	struct:sangerGeneToWBGeneID
WEB_H	hg/inc/web.h	4;"	d
WEXITSTATUS	inc/common.h	71;"	d
WGRNA_H	hg/inc/wgRna.h	6;"	d
WGRNA_NUM_COLS	hg/inc/wgRna.h	8;"	d
WIFEXITED	inc/common.h	67;"	d
WIFSIGNALED	inc/common.h	75;"	d
WIFSTOPPED	inc/common.h	83;"	d
WIGGLE_H	hg/inc/wiggle.h	6;"	d
WIGGLE_HELP_PAGE	hg/lib/hui.c	4399;"	d	file:
WIGGLE_NUM_COLS	hg/inc/wiggle.h	12;"	d
WIG_AGGREGATE_NONE	hg/inc/hui.h	581;"	d
WIG_AGGREGATE_SOLID	hg/inc/hui.h	583;"	d
WIG_AGGREGATE_TRANSPARENT	hg/inc/hui.h	582;"	d
WIG_ALL_DATA	hg/inc/wiggle.h	489;"	d
WIG_DATA_NOT_RETURNED	hg/inc/wiggle.h	487;"	d
WIG_NO_DATA	hg/inc/wiggle.h	88;"	d
WIG_RETURN_DATA	hg/inc/wiggle.h	488;"	d
WIG_SUMMARY_ONLY	hg/inc/wiggle.h	486;"	d
WIKILINK_H	hg/inc/wikiLink.h	4;"	d
WIKITRACK_H	hg/inc/wikiTrack.h	6;"	d
WIKITRACK_NUM_COLS	hg/inc/wikiTrack.h	18;"	d
WIKI_NO_TEXT_RESPONSE	hg/inc/wikiTrack.h	130;"	d
WIKI_TRACK_LABEL	hg/inc/wikiTrack.h	120;"	d
WIKI_TRACK_LONGLABEL	hg/inc/wikiTrack.h	121;"	d
WIKI_TRACK_PRIORITY	hg/inc/wikiTrack.h	122;"	d
WIKI_TRACK_TABLE	hg/inc/wikiTrack.h	117;"	d
WINDOWINGFUNCTION	hg/inc/wiggle.h	276;"	d
WIN_POS_LABEL	hg/inc/hui.h	72;"	d
WIN_TITLE_LABEL	hg/inc/hui.h	73;"	d
WORD	inc/common.h	109;"	d
WORMDNA_H	inc/wormdna.h	8;"	d
WORST	lib/axtAffine.c	230;"	d	file:
WRITE_ERROR	lib/gifcodes.h	42;"	d
WSTOPSIG	inc/common.h	87;"	d
WTERMSIG	inc/common.h	79;"	d
WarnHandler	inc/errabort.h	/^typedef void (*WarnHandler)(char *format, va_list args);$/;"	t
XALI_H	inc/xAli.h	6;"	d
XAP_H	inc/xap.h	8;"	d
XA_H	inc/xa.h	8;"	d
XENALIGN_H	inc/xenalign.h	8;"	d
XMLESCAPE_H	inc/xmlEscape.h	5;"	d
XP_H	inc/xp.h	8;"	d
YALEGENCODEASSOC_H	hg/inc/yaleGencodeAssoc.h	6;"	d
YALESANGERASSOC_NUM_COLS	hg/inc/yaleGencodeAssoc.h	8;"	d
YLINEMARK	hg/inc/wiggle.h	279;"	d
YLINEONOFF	hg/inc/wiggle.h	278;"	d
ZDOBNOVSYNT_H	hg/inc/zdobnovSynt.h	6;"	d
ZDOBNOVSYNT_NUM_COLS	hg/inc/zdobnovSynt.h	8;"	d
ZLIBFACE_H	inc/zlibFace.h	4;"	d
ZOOM_10X	hg/inc/hui.h	700;"	d
ZOOM_1PT5X	hg/inc/hui.h	698;"	d
ZOOM_3X	hg/inc/hui.h	699;"	d
ZOOM_BASE	hg/inc/hui.h	701;"	d
ZeroVar	inc/common.h	326;"	d
_3_prime_UTR_variant	hg/inc/soterm.h	/^    _3_prime_UTR_variant=1624,$/;"	e	enum:__anon11
_5_prime_UTR_variant	hg/inc/soterm.h	/^    _5_prime_UTR_variant=1623,$/;"	e	enum:__anon11
_BY_RANGE	hg/inc/hui.h	1002;"	d
_FILE_OFFSET_BITS	inc/common.h	22;"	d
_GNU_SOURCE	inc/common.h	18;"	d
_IOLIB	inc/bamFile.h	13;"	d
_LARGEFILE_SOURCE	inc/common.h	14;"	d
_LIMITS	hg/inc/hui.h	999;"	d
_MAX	hg/inc/hui.h	1001;"	d
_MIN	hg/inc/hui.h	1000;"	d
_NO	hg/inc/hui.h	998;"	d
_REENTRANT	inc/common.h	27;"	d
__trashDir	lib/servBrcMcw.c	/^static char *__trashDir = "\/trash";$/;"	v	file:
__trashDir	lib/servCrunx.c	/^static char *__trashDir = "\/home\/httpd\/html\/trash";$/;"	v	file:
__trashDir	lib/servcis.c	/^static char *__trashDir = "..\/trash";$/;"	v	file:
__trashDir	lib/servcl.c	/^static char *__trashDir = ".";$/;"	v	file:
__trashDir	lib/servmsII.c	/^static char *__trashDir = "..\\\\trash";$/;"	v	file:
__trashDir	lib/servpws.c	/^static char *__trashDir = "..\\\\trash";$/;"	v	file:
_agxSortable	hg/lib/altGraphX.c	/^struct altGraphX *_agxSortable = NULL; \/* used for sorting. *\/$/;"	v	typeref:struct:altGraphX
_bestOrfExe	hg/lib/borf.c	/^static char *_bestOrfExe = "\/projects\/compbio\/bin\/bestorf.linux\/bestorf";$/;"	v	file:
_bestOrfParam	hg/lib/borf.c	/^static char *_bestOrfParam = "\/projects\/compbio\/bin\/bestorf.linux\/hume.dat";$/;"	v	file:
_binFirstShift	lib/binRange.c	24;"	d	file:
_binNextShift	lib/binRange.c	25;"	d	file:
_binOffsetOldToExtended	inc/binRange.h	17;"	d
_cartVarDbName	hg/inc/cart.h	/^INLINE char *_cartVarDbName(const char *db, const char *var)$/;"	f
_cgiDir	lib/servBrcMcw.c	/^static char *_cgiDir()$/;"	f	file:
_cgiDir	lib/servCrunx.c	/^static char *_cgiDir()$/;"	f	file:
_cgiDir	lib/servcis.c	/^static char *_cgiDir()$/;"	f	file:
_cgiDir	lib/servcl.c	/^static char *_cgiDir()$/;"	f	file:
_cgiDir	lib/servmsII.c	/^static char *_cgiDir()$/;"	f	file:
_cgiDir	lib/servpws.c	/^static char *_cgiDir()$/;"	f	file:
_cgiFindInput	lib/cheapcgi.c	/^static void _cgiFindInput(char *method)$/;"	f	file:
_cgiRawInput	lib/cheapcgi.c	/^char *_cgiRawInput()$/;"	f
_dimensions	hg/lib/hui.c	/^typedef struct _dimensions {$/;"	s	file:
_dividers	hg/lib/hui.c	/^typedef struct _dividers {$/;"	s	file:
_dotForUserMod	lib/obscure.c	/^static int _dotForUserMod = 100; \/* How often does dotForUser() output a dot. *\/$/;"	v	file:
_eCfgType	hg/inc/trackDb.h	/^typedef enum _eCfgType$/;"	g
_filterBy	hg/inc/hui.h	/^typedef struct _filterBy {$/;"	s
_gffGetLine	lib/oldGff.c	/^static boolean _gffGetLine(struct gff *gff)$/;"	f	file:
_gffIdent	lib/oldGff.c	/^static char _gffIdent[] = "##gff-version";$/;"	v	file:
_gffSeekDna	lib/oldGff.c	/^static boolean _gffSeekDna(struct gff *gff)$/;"	f	file:
_gffSeekDoubleSharpLine	lib/oldGff.c	/^static boolean _gffSeekDoubleSharpLine(struct gff *gff)$/;"	f	file:
_hgCustomName	hg/lib/hCommon.c	/^static char *_hgCustomName = "..\/cgi-bin\/hgCustom"; \/* Path back to the custom tracks manager. *\/$/;"	v	file:
_hgFileUiName	hg/lib/hCommon.c	/^static char *_hgFileUiName = "..\/cgi-bin\/hgFileUi";   \/* Path to downloladable files CGI. *\/$/;"	v	file:
_hgHubConnectName	hg/lib/hCommon.c	/^static char *_hgHubConnectName = "..\/cgi-bin\/hgHubConnect"; \/* Path back to the track hub manager. *\/$/;"	v	file:
_hgPalName	hg/lib/hCommon.c	/^static char *_hgPalName = "..\/cgi-bin\/hgPal"; \/* Path back to the protein aligner *\/$/;"	v	file:
_hgSessionName	hg/lib/hCommon.c	/^static char *_hgSessionName = "..\/cgi-bin\/hgSession";	\/* Path to session manager. *\/$/;"	v	file:
_hgTablesName	hg/lib/hCommon.c	/^static char *_hgTablesName = "..\/cgi-bin\/hgTables"; \/* Path back to the table browser. *\/$/;"	v	file:
_hgTextName	hg/lib/hCommon.c	/^static char *_hgTextName = "..\/cgi-bin\/hgText"; \/* Path back to the text browser. *\/$/;"	v	file:
_hgTrackUiName	hg/lib/hCommon.c	/^static char *_hgTrackUiName = "..\/cgi-bin\/hgTrackUi"; \/* Path to extended ui program. *\/$/;"	v	file:
_hgTracksName	hg/lib/hCommon.c	/^static char *_hgTracksName = "..\/cgi-bin\/hgTracks"; \/* Path back to genome browser. *\/$/;"	v	file:
_hgVarAnnogratorName	hg/lib/hCommon.c	/^static char *_hgVarAnnogratorName = "..\/cgi-bin\/hgVarAnnogrator"; \/* Path to variant annot intgr *\/$/;"	v	file:
_hgcName	hg/lib/hCommon.c	/^static char *_hgcName = "..\/cgi-bin\/hgc";	\/* Path to click processing program. *\/$/;"	v	file:
_hierarchy	hg/lib/hui.c	/^typedef struct _hierarchy {$/;"	s	file:
_htmStartWithHead	lib/htmshell.c	/^void _htmStartWithHead(FILE *f, char *head, char *title, boolean printDocType, int dirDepth)$/;"	f
_jsonElementType	hg/inc/jsHelper.h	/^typedef enum _jsonElementType$/;"	g
_makeTempName	lib/servBrcMcw.c	/^static void _makeTempName(struct tempName *tn, char *base, char *suffix)$/;"	f	file:
_makeTempName	lib/servCrunx.c	/^static void _makeTempName(struct tempName *tn, char *base, char *suffix)$/;"	f	file:
_makeTempName	lib/servcis.c	/^static void _makeTempName(struct tempName *tn, char *base, char *suffix)$/;"	f	file:
_makeTempName	lib/servcl.c	/^static void _makeTempName(struct tempName *tn, char *base, char *suffix)$/;"	f	file:
_makeTempName	lib/servmsII.c	/^static void _makeTempName(struct tempName *tn, char *base, char *suffix)$/;"	f	file:
_makeTempName	lib/servpws.c	/^static void _makeTempName(struct tempName *tn, char *base, char *suffix)$/;"	f	file:
_members	hg/lib/hui.c	/^typedef struct _members {$/;"	s	file:
_membersForAll	hg/lib/hui.c	/^typedef struct _membersForAll {$/;"	s	file:
_membership	hg/lib/hui.c	/^typedef struct _membership {$/;"	s	file:
_mgBpr	inc/memgfx.h	145;"	d
_mgGetDot	inc/memgfx.h	154;"	d
_mgPixAdr	inc/memgfx.h	148;"	d
_mgPutDot	inc/memgfx.h	151;"	d
_mgPutDotMultiply	lib/memgfx.c	/^void _mgPutDotMultiply(struct memGfx *mg, int x, int y,Color color)$/;"	f
_sortColumn	hg/inc/hui.h	/^typedef struct _sortColumn {$/;"	s
_sortOrder	hg/inc/hui.h	/^typedef struct _sortOrder {$/;"	s
_sortableTdbItem	hg/inc/hui.h	/^typedef struct _sortableTdbItem {$/;"	s
_speed	lib/servBrcMcw.c	/^static double _speed()$/;"	f	file:
_speed	lib/servCrunx.c	/^static double _speed()$/;"	f	file:
_speed	lib/servcis.c	/^static double _speed()$/;"	f	file:
_speed	lib/servcl.c	/^static double _speed()$/;"	f	file:
_speed	lib/servmsII.c	/^static double _speed()$/;"	f	file:
_speed	lib/servpws.c	/^static double _speed()$/;"	f	file:
_trashDir	lib/servBrcMcw.c	/^static char *_trashDir()$/;"	f	file:
_trashDir	lib/servCrunx.c	/^static char *_trashDir()$/;"	f	file:
_trashDir	lib/servcis.c	/^static char *_trashDir()$/;"	f	file:
_trashDir	lib/servcl.c	/^static char *_trashDir()$/;"	f	file:
_trashDir	lib/servmsII.c	/^static char *_trashDir()$/;"	f	file:
_trashDir	lib/servpws.c	/^static char *_trashDir()$/;"	f	file:
a	hg/inc/joiner.h	/^    struct joinerDtf *a;	\/* Typically contains field from input table *\/$/;"	m	struct:joinerPair	typeref:struct:joinerPair::joinerDtf
a	hg/lib/ensFace.c	/^   char *a;	\/* One string. *\/$/;"	m	struct:stringPair	file:
a	inc/diGraph.h	/^    struct dgNode *a;   \/* Node on incoming side. *\/$/;"	m	struct:dgEdge	typeref:struct:dgEdge::dgNode
aDouble	inc/annoFilter.h	/^    long double aDouble;$/;"	m	union:aNumber
aNumber	inc/annoFilter.h	/^union aNumber$/;"	u
aPenalty	jkOwnLib/ffSeedExtend.c	/^int aPenalty(char *s, int size)$/;"	f
aProb	inc/dnaMotif.h	/^    float *aProb;       \/* Probability of A's in each column. *\/ $/;"	m	struct:dnaMotif
aa	hg/inc/rnaGenes.h	/^    char *aa;	\/* Amino acid for the tRNA *\/$/;"	m	struct:rnaGenes
aa	hg/inc/tRNAs.h	/^    char *aa;	\/* Amino acid for the tRNA *\/$/;"	m	struct:tRNAs
aaAbbr	lib/dnautil.c	/^char *aaAbbr(int i)$/;"	f
aaAcidity	hg/lib/pgSnp.c	/^char *aaAcidity (char *aa)$/;"	f
aaChange	hg/inc/pgPolyphenPred.h	/^    char *aaChange;	\/* amino acid change *\/$/;"	m	struct:pgPolyphenPred
aaChangeString	hg/lib/gpFx.c	/^aaChangeString(int pepPosition, int numaa, char *oldaa, char *newaa)$/;"	f	file:
aaChanges	hg/inc/soterm.h	/^	    char *aaChanges;$/;"	m	struct:soCall::__anon12::codingChange
aaChars	lib/dnautil.c	/^AA aaChars[256];	\/* 0 except for value aa characters.  Converts to upper case rest. *\/$/;"	v
aaFilter	lib/dnautil.c	/^void aaFilter(char *in, DNA *out)$/;"	f
aaFilteredSize	lib/dnautil.c	/^long aaFilteredSize(char *raw)$/;"	f
aaHydropathy	hg/lib/pgSnp.c	/^float aaHydropathy (char *aa)$/;"	f
aaLetter	lib/dnautil.c	/^char aaLetter(int i)$/;"	f
aaPolarity	hg/lib/pgSnp.c	/^char *aaPolarity (char *aa)$/;"	f
aaProperties	hg/lib/pgSnp.c	/^void aaProperties (char *aa1, char *aa2)$/;"	f
aaScore2	lib/dnautil.c	/^int aaScore2(AA a, AA b)$/;"	f
aaScoreMatch	lib/dnautil.c	/^int aaScoreMatch(AA *a, AA *b, int size)$/;"	f
aaSeq	inc/dnaseq.h	/^typedef struct dnaSeq aaSeq;	\/* Preferred use if protein. *\/$/;"	t	typeref:struct:dnaSeq
aaSequence	hg/lib/mafGene.c	/^    char *aaSequence;$/;"	m	struct:speciesInfo	file:
aaSize	hg/lib/mafGene.c	/^    int aaSize;$/;"	m	struct:speciesInfo	file:
aaVal	lib/dnautil.c	/^int aaVal[256];$/;"	v
abbr	hg/inc/taxonGeneticCode.h	/^    char *abbr;	\/* division code 3 characters  *\/$/;"	m	struct:taxonGeneticCode
abbreviatedBandName	hg/lib/hCytoBand.c	/^static char *abbreviatedBandName(struct cytoBand *band, $/;"	f	file:
abbreviation	lib/dnautil.c	/^    char abbreviation[3];$/;"	m	struct:aminoAcidTable	file:
abcCount	hg/lib/hui.c	/^    int abcCount;$/;"	m	struct:_membersForAll	file:
abcMembersChecked	hg/lib/hui.c	/^static char* abcMembersChecked(struct trackDb *parentTdb, struct cart *cart, members_t* members, char letter)$/;"	f	file:
abortArray	lib/errabort.c	/^    AbortHandler abortArray[maxAbortHandlers];$/;"	m	struct:perThreadAbortVars	file:
abortIx	lib/errabort.c	/^    int abortIx;$/;"	m	struct:perThreadAbortVars	file:
abundance	hg/inc/sgdAbundance.h	/^    float abundance;	\/* Absolute abundance from 41 to 1590000 *\/$/;"	m	struct:sgdAbundance
ac	hg/inc/rnaGenes.h	/^    char *ac;	\/* Anticodon for the tRNA *\/$/;"	m	struct:rnaGenes
ac	hg/inc/tRNAs.h	/^    char *ac;	\/* Anticodon for the tRNA *\/$/;"	m	struct:tRNAs
ac	hg/inc/tfbsConsFactors.h	/^    char *ac;	\/* Gene-regulation.com AC *\/$/;"	m	struct:tfbsConsFactors
ac	hg/inc/tfbsConsMap.h	/^    char *ac;	\/* gene-regulation.com AC *\/$/;"	m	struct:tfbsConsMap
acc	hg/inc/bacEndAlias.h	/^    char *acc;	\/* GenBank accession for the BAC End *\/$/;"	m	struct:bacEndAlias
acc	hg/inc/contigAcc.h	/^    char *acc;	\/* Genbank accession *\/$/;"	m	struct:contigAcc
acc	hg/inc/gbMiscDiff.h	/^    char acc[13];	\/* Genbank accession *\/$/;"	m	struct:gbMiscDiff
acc	hg/inc/gbSeq.h	/^    char *acc;	\/* Accession of sequence *\/$/;"	m	struct:gbSeq
acc	hg/inc/gbWarn.h	/^    char acc[13];	\/* Genbank accession *\/$/;"	m	struct:gbWarn
acc	hg/inc/geneCheck.h	/^    char *acc;	\/* gene id or accession *\/$/;"	m	struct:geneCheck
acc	hg/inc/geneCheckDetails.h	/^    char *acc;	\/* gene id or accession *\/$/;"	m	struct:geneCheckDetails
acc	hg/inc/gv.h	/^    char *acc;	\/* accession or id used by link *\/$/;"	m	struct:gvLink
acc	hg/inc/omicia.h	/^    char *acc;	\/* accession or id used by link *\/$/;"	m	struct:omiciaLink
acc	hg/inc/protVar.h	/^    char *acc;	\/* accession or id used by link *\/$/;"	m	struct:protVarLink
acc	hg/inc/spDb.h	/^    SpAcc acc;	\/* SwissProt accession. *\/$/;"	m	struct:spCitation
acc3	hg/inc/estPair.h	/^    char *acc3;	\/* 3' EST accession number *\/$/;"	m	struct:estPair
acc3	hg/inc/stanMad.h	/^    char *acc3;	\/* The 3' GenBank accession number for an EST generated from the printed cDNA clone (This is the most stable handle for retrieving up to date information about this cDNA clone) *\/$/;"	m	struct:stanMad
acc5	hg/inc/estPair.h	/^    char *acc5;	\/* 5' EST accession number *\/$/;"	m	struct:estPair
acc5	hg/inc/stanMad.h	/^    char *acc5;	\/* The 5' GenBank accession number for an EST generated from the printed cDNA clone (This is the most stable handle for retrieving up to date information about this cDNA clone) *\/$/;"	m	struct:stanMad
accCount	hg/inc/fishClones.h	/^    unsigned accCount;	\/* Number of accessions associated with the clone *\/$/;"	m	struct:fishClones
accCount	hg/inc/txRnaAccs.h	/^    int accCount;	\/* Count of total accessions *\/$/;"	m	struct:txRnaAccs
accNames	hg/inc/fishClones.h	/^    char **accNames;	\/* Accession associated with clone *\/$/;"	m	struct:fishClones
accSP6	hg/inc/genMapDb.h	/^    char *accSP6;	\/* Accession number for SP6 BAC end sequence *\/$/;"	m	struct:genMapDb
accT7	hg/inc/genMapDb.h	/^    char *accT7;	\/* Accession number for T7 BAC end sequence *\/$/;"	m	struct:genMapDb
accession	hg/inc/cddDesc.h	/^    char *accession;	\/* accession *\/$/;"	m	struct:cddDesc
accession	hg/inc/cdsEvidence.h	/^    char *accession;	\/* Genbank\/uniProt accession *\/$/;"	m	struct:cdsEvidence
accession	hg/inc/hgnc.h	/^    char *accession;	\/* Accession Numbers *\/$/;"	m	struct:hgnc
accession	hg/inc/tilingPath.h	/^    char *accession;	\/* Clone accession or ? or GAP *\/$/;"	m	struct:tilingPath
accession	hg/inc/txGraph.h	/^    char *accession;	\/* GenBank accession. With type forms a key *\/$/;"	m	struct:txSource
accs	hg/inc/txRnaAccs.h	/^    char **accs;	\/* Array of accessions.  Not all of these have all exons *\/$/;"	m	struct:txRnaAccs
accumCounts	lib/psl.c	/^static void accumCounts(struct psl *psl, char prevQ, char prevT,$/;"	f	file:
accumStats	hg/lib/wigDataStream.c	/^static void accumStats(struct wiggleDataStream *wds, float lowerLimit,$/;"	f	file:
accumStats	hg/lib/wiggleUtils.c	/^static void accumStats(struct wigStatsAcc *ws, struct wiggleData *wdPtr,$/;"	f	file:
ace	inc/ace.h	/^struct ace$/;"	s
aceAF	inc/ace.h	/^struct aceAF$/;"	s
aceAS	inc/ace.h	/^    struct aceAS aceAS;$/;"	m	struct:ace	typeref:struct:ace::aceAS
aceAS	inc/ace.h	/^struct aceAS$/;"	s
aceCO	inc/ace.h	/^    struct aceCO aceCO;$/;"	m	struct:ace	typeref:struct:ace::aceCO
aceCO	inc/ace.h	/^struct aceCO$/;"	s
aceRD	inc/ace.h	/^struct aceRD$/;"	s
acemblyAll	hg/inc/hui.h	/^    acemblyAll =0,$/;"	e	enum:acemblyOptEnum
acemblyClass	hg/inc/acemblyClass.h	/^struct acemblyClass$/;"	s
acemblyClassCommaIn	hg/lib/acemblyClass.c	/^struct acemblyClass *acemblyClassCommaIn(char **pS, struct acemblyClass *ret)$/;"	f
acemblyClassCommaOut	hg/inc/acemblyClass.h	56;"	d
acemblyClassFree	hg/lib/acemblyClass.c	/^void acemblyClassFree(struct acemblyClass **pEl)$/;"	f
acemblyClassFreeList	hg/lib/acemblyClass.c	/^void acemblyClassFreeList(struct acemblyClass **pList)$/;"	f
acemblyClassLoad	hg/lib/acemblyClass.c	/^struct acemblyClass *acemblyClassLoad(char **row)$/;"	f
acemblyClassLoadAll	hg/lib/acemblyClass.c	/^struct acemblyClass *acemblyClassLoadAll(char *fileName) $/;"	f
acemblyClassLoadAllByChar	hg/lib/acemblyClass.c	/^struct acemblyClass *acemblyClassLoadAllByChar(char *fileName, char chopper) $/;"	f
acemblyClassLoadAllByTab	hg/inc/acemblyClass.h	34;"	d
acemblyClassOutput	hg/lib/acemblyClass.c	/^void acemblyClassOutput(struct acemblyClass *el, FILE *f, char sep, char lastSep) $/;"	f
acemblyClassStaticLoad	hg/lib/acemblyClass.c	/^void acemblyClassStaticLoad(char **row, struct acemblyClass *ret)$/;"	f
acemblyClassTabOut	hg/inc/acemblyClass.h	53;"	d
acemblyDropDown	hg/lib/hui.c	/^void acemblyDropDown(char *var, char *curVal)$/;"	f
acemblyEnumToString	hg/lib/hui.c	/^char *acemblyEnumToString(enum acemblyOptEnum x)$/;"	f
acemblyMain	hg/inc/hui.h	/^    acemblyMain=1,$/;"	e	enum:acemblyOptEnum
acemblyOptEnum	hg/inc/hui.h	/^enum acemblyOptEnum {$/;"	g
acemblyOptions	hg/lib/hui.c	/^static char *acemblyOptions[] = {$/;"	v	file:
acemblyPutative	hg/inc/hui.h	/^    acemblyPutative=2,$/;"	e	enum:acemblyOptEnum
acemblyStringToEnum	hg/lib/hui.c	/^enum acemblyOptEnum acemblyStringToEnum(char *string)$/;"	f
acgtCount	hg/lib/cutter.c	/^int acgtCount(char *seq)$/;"	f
acol	hg/inc/stanMad.h	/^    int acol;	\/* unknown *\/$/;"	m	struct:stanMad
action	inc/htmlPage.h	/^    char *action;		\/* Action attribute value.  Not allocated here. *\/$/;"	m	struct:htmlForm
active	hg/inc/dbDb.h	/^    int active;	\/* Flag indicating whether this db is in active use *\/$/;"	m	struct:dbDb
addAttr	lib/gff3.c	/^static void addAttr(struct gff3Ann *g3a, char *tag, char *valStr)$/;"	f	file:
addBaseProb	lib/dnaMotif.c	/^static void addBaseProb(struct letterProb **pList, char letter, double prob)$/;"	f	file:
addBlock	lib/psl.c	/^static void addBlock(struct psl* psl, int qs, int qe, int ts, int te,$/;"	f	file:
addChildRefsToParents	hg/lib/hdb.c	/^static void addChildRefsToParents(struct trackDb *tdbList)$/;"	f	file:
addChildren	hg/lib/joiner.c	/^static void addChildren(struct joinerSet *js,  struct slRef **pList)$/;"	f	file:
addCluster	lib/peakCluster.c	/^static void addCluster(struct lm *lm, struct peakItem *itemList, int start, int end,$/;"	f	file:
addCommasToPos	hg/lib/hdb.c	/^char *addCommasToPos(char *db, char *position)$/;"	f
addConfigIfUndef	hg/lib/hgConfig.c	/^static void addConfigIfUndef(char *prefix, char *suffix, char *value)$/;"	f	file:
addConstraint	hg/lib/wigDataStream.c	/^static void addConstraint(struct wiggleDataStream *wds, char *left, char *right)$/;"	f	file:
addDatabasesToHash	hg/lib/joiner.c	/^static void addDatabasesToHash(struct hash *hash, char *s, struct lineFile *lf)$/;"	f	file:
addDependenciesFromIdentifiers	hg/lib/joiner.c	/^static void addDependenciesFromIdentifiers(struct joiner *joiner)$/;"	f	file:
addDescription	hg/lib/wikiTrack.c	/^void addDescription(struct wikiTrack *item, char *userName,$/;"	f
addExtraHits	jkOwnLib/ffSeedExtend.c	/^static void addExtraHits(struct gfHit *hitList, int hitSize, $/;"	f	file:
addFasta	lib/gff3.c	/^static void addFasta(struct gff3File *g3f, char *dna, int size, char *name)$/;"	f	file:
addFeature	hg/lib/hgSeq.c	/^static void addFeature(int *count, unsigned *starts, unsigned *sizes,$/;"	f	file:
addInfoDef	lib/vcf.c	/^static void addInfoDef(struct vcfInfoDef **pList,$/;"	f	file:
addIntervals	lib/metaWig.c	/^static void addIntervals(struct bwgSection *section, struct lm *lm, struct bbiInterval **pList)$/;"	f	file:
addKGProtAlias	hg/lib/findKGProtAlias.c	/^static void addKGProtAlias(struct sqlConnection *conn, struct dyString *query,$/;"	f	file:
addKgAlias	hg/lib/findKGAlias.c	/^static void addKgAlias(struct sqlConnection *conn, struct dyString *query,$/;"	f	file:
addKnownGeneItems	hg/lib/hgFind.c	/^static void addKnownGeneItems(struct hgPosTable *table,$/;"	f	file:
addKnownGeneTable	hg/lib/hgFind.c	/^static struct hgPosTable *addKnownGeneTable(char *db, struct hgPositions *hgp)$/;"	f	file:
addMrnaFilter	hg/lib/hui.c	/^static void addMrnaFilter(struct mrnaUiData *mud, char *track, char *label, char *key, char *table)$/;"	f	file:
addMrnaPositionTable	hg/lib/hgFind.c	/^static int addMrnaPositionTable(char *db, struct hgPositions *hgp, $/;"	f	file:
addOverlap	lib/rangeTree.c	/^static void addOverlap(void *v)$/;"	f	file:
addPrefixToSetting	hg/lib/trackHub.c	/^static void addPrefixToSetting(struct hash *settings, char *key, char *prefix)$/;"	f	file:
addProfileDatabases	hg/lib/jksql.c	/^static void addProfileDatabases(char *profileName, struct hash *databases)$/;"	f	file:
addPslBlock	lib/pslTransMap.c	/^static void addPslBlock(struct psl* psl, struct block* blk, int* pslMax)$/;"	f	file:
addPslResultToHgp	hg/lib/hgFind.c	/^static void addPslResultToHgp(struct hgPositions *hgp, char *db, char *tableName,$/;"	f	file:
addRef	lib/rbTree.c	/^static void addRef(void *item)$/;"	f	file:
addRefLinkAccs	hg/lib/hgFind.c	/^static void addRefLinkAccs(struct sqlConnection *conn, struct slName *accList,$/;"	f	file:
addRefLinks	hg/lib/hgFind.c	/^static void addRefLinks(struct sqlConnection *conn, struct dyString *query,$/;"	f	file:
addRefWithContext	lib/rbTree.c	/^static void addRefWithContext(void *item, void *context)$/;"	f	file:
addSize	hg/lib/alignSeqSizes.c	/^static void addSize(char *name, unsigned size, struct hash *sizes)$/;"	f	file:
addSpliceNode	hg/lib/altGraphX.c	/^void addSpliceNode(struct hash *spliceHash, int count, int vertex, int position, int row, int maxRows)$/;"	f
addSub	lib/intExp.c	/^static double addSub()$/;"	f	file:
addSuffix	lib/common.c	/^char *addSuffix(char *head, char *suffix)$/;"	f
addTigrCmrGenes	hg/lib/hgFind.c	/^static void addTigrCmrGenes(struct sqlConnection *conn, struct dyString *query,$/;"	f	file:
addToBigBundleList	jkOwnLib/gfBlatLib.c	/^static void addToBigBundleList(struct ssBundle **pOneList, struct hash *bunHash, $/;"	f	file:
addToChars	hg/lib/hgBam.c	/^static void addToChars(char *s, int size, char amount)$/;"	f	file:
addToPatSpace	jkOwnLib/patSpace.c	/^static int addToPatSpace(struct patSpace *ps, int bacIx, int seqIx, struct dnaSeq *seq,int startBlock)$/;"	f	file:
addToQuickHeap	lib/quickHeap.c	/^void addToQuickHeap(struct quickHeap *h, void *elem)$/;"	f
addTrackIfDataAccessible	hg/lib/hdb.c	/^static void addTrackIfDataAccessible(char *database, struct trackDb *tdb,$/;"	f	file:
addUniqYeastGene	hg/lib/hgFind.c	/^static void addUniqYeastGene(char *db, struct hash *uniqHash, $/;"	f	file:
addVariomeItem	hg/lib/variome.c	/^int addVariomeItem(char *db, char *chrom, int start, int end,$/;"	f
add_offset	hg/lib/wigAsciiToBinary.c	/^static long long add_offset = 0;	\/* to allow "lifting" of the data *\/$/;"	v	file:
added_chars	lib/gifcomp.c	/^static unsigned char *added_chars;$/;"	v	file:
adjImpliedStopAfterCds	hg/lib/genePred.c	/^static void adjImpliedStopAfterCds(struct genePred *gp)$/;"	f	file:
adjImpliedStopNeg	hg/lib/genePred.c	/^static boolean adjImpliedStopNeg(struct genePred *gp)$/;"	f	file:
adjImpliedStopPos	hg/lib/genePred.c	/^static boolean adjImpliedStopPos(struct genePred *gp)$/;"	f	file:
adjustBForParallelLine	lib/pscmGfx.c	/^void adjustBForParallelLine(boolean cw, double m, $/;"	f
adjustOrientation	lib/pslTransMap.c	/^static void adjustOrientation(unsigned opts, struct psl *inPsl, char *inPslOrigStrand,$/;"	f	file:
adjustWikiUrls	hg/lib/wikiTrack.c	/^char *adjustWikiUrls (char *comments) $/;"	f
advanceToken	lib/keys.c	/^static void advanceToken()$/;"	f	file:
advancedTab	hg/inc/search.h	/^    advancedTab = 1,$/;"	e	enum:searchTab
afEqual	inc/annoFilter.h	/^    afEqual,		\/\/ Numeric column value equals a given value$/;"	e	enum:annoFilterOp
afGT	inc/annoFilter.h	/^    afGT,		\/\/ Numeric column value is greater than a given value$/;"	e	enum:annoFilterOp
afGTE	inc/annoFilter.h	/^    afGTE,		\/\/ Numeric column value is greater than or equal to a given value$/;"	e	enum:annoFilterOp
afInRange	inc/annoFilter.h	/^    afInRange,		\/\/ Numeric column value falls within fully-closed [given min, given max]$/;"	e	enum:annoFilterOp
afLT	inc/annoFilter.h	/^    afLT,		\/\/ Numeric column value is less than a given value$/;"	e	enum:annoFilterOp
afLTE	inc/annoFilter.h	/^    afLTE,		\/\/ Numeric column value is less than or equal to a given value$/;"	e	enum:annoFilterOp
afList	inc/ace.h	/^    struct aceAF *afList;$/;"	m	struct:ace	typeref:struct:ace::aceAF
afMatch	inc/annoFilter.h	/^    afMatch,		\/\/ Stringish column value must match given value(s)$/;"	e	enum:annoFilterOp
afNoFilter	inc/annoFilter.h	/^    afNoFilter,		\/\/ Any column value passes filter$/;"	e	enum:annoFilterOp
afNotEqual	inc/annoFilter.h	/^    afNotEqual,		\/\/ Numeric column value does not equal a given value$/;"	e	enum:annoFilterOp
afNotMatch	inc/annoFilter.h	/^    afNotMatch,		\/\/ Stringish column value must not match given value(s)$/;"	e	enum:annoFilterOp
affineAlign	lib/axtAffine.c	/^static void affineAlign(char *query, int querySize, $/;"	f	file:
affy10K	hg/inc/affy10K.h	/^struct affy10K$/;"	s
affy10KCommaIn	hg/lib/affy10K.c	/^struct affy10K *affy10KCommaIn(char **pS, struct affy10K *ret)$/;"	f
affy10KCommaOut	hg/inc/affy10K.h	87;"	d
affy10KDetails	hg/inc/affy10KDetails.h	/^struct affy10KDetails$/;"	s
affy10KDetailsCommaIn	hg/lib/affy10KDetails.c	/^struct affy10KDetails *affy10KDetailsCommaIn(char **pS, struct affy10KDetails *ret)$/;"	f
affy10KDetailsCommaOut	hg/inc/affy10KDetails.h	91;"	d
affy10KDetailsFree	hg/lib/affy10KDetails.c	/^void affy10KDetailsFree(struct affy10KDetails **pEl)$/;"	f
affy10KDetailsFreeList	hg/lib/affy10KDetails.c	/^void affy10KDetailsFreeList(struct affy10KDetails **pList)$/;"	f
affy10KDetailsLoad	hg/lib/affy10KDetails.c	/^struct affy10KDetails *affy10KDetailsLoad(char **row)$/;"	f
affy10KDetailsLoadAll	hg/lib/affy10KDetails.c	/^struct affy10KDetails *affy10KDetailsLoadAll(char *fileName) $/;"	f
affy10KDetailsLoadAllByChar	hg/lib/affy10KDetails.c	/^struct affy10KDetails *affy10KDetailsLoadAllByChar(char *fileName, char chopper) $/;"	f
affy10KDetailsLoadAllByTab	hg/inc/affy10KDetails.h	44;"	d
affy10KDetailsLoadByQuery	hg/lib/affy10KDetails.c	/^struct affy10KDetails *affy10KDetailsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
affy10KDetailsOutput	hg/lib/affy10KDetails.c	/^void affy10KDetailsOutput(struct affy10KDetails *el, FILE *f, char sep, char lastSep) $/;"	f
affy10KDetailsSaveToDb	hg/lib/affy10KDetails.c	/^void affy10KDetailsSaveToDb(struct sqlConnection *conn, struct affy10KDetails *el, char *tableName, int updateSize)$/;"	f
affy10KDetailsSaveToDbEscaped	hg/lib/affy10KDetails.c	/^void affy10KDetailsSaveToDbEscaped(struct sqlConnection *conn, struct affy10KDetails *el, char *tableName, int updateSize)$/;"	f
affy10KDetailsStaticLoad	hg/lib/affy10KDetails.c	/^void affy10KDetailsStaticLoad(char **row, struct affy10KDetails *ret)$/;"	f
affy10KDetailsTabOut	hg/inc/affy10KDetails.h	88;"	d
affy10KFree	hg/lib/affy10K.c	/^void affy10KFree(struct affy10K **pEl)$/;"	f
affy10KFreeList	hg/lib/affy10K.c	/^void affy10KFreeList(struct affy10K **pList)$/;"	f
affy10KLoad	hg/lib/affy10K.c	/^struct affy10K *affy10KLoad(char **row)$/;"	f
affy10KLoadAll	hg/lib/affy10K.c	/^struct affy10K *affy10KLoadAll(char *fileName) $/;"	f
affy10KLoadAllByChar	hg/lib/affy10K.c	/^struct affy10K *affy10KLoadAllByChar(char *fileName, char chopper) $/;"	f
affy10KLoadAllByTab	hg/inc/affy10K.h	40;"	d
affy10KLoadByQuery	hg/lib/affy10K.c	/^struct affy10K *affy10KLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
affy10KOutput	hg/lib/affy10K.c	/^void affy10KOutput(struct affy10K *el, FILE *f, char sep, char lastSep) $/;"	f
affy10KSaveToDb	hg/lib/affy10K.c	/^void affy10KSaveToDb(struct sqlConnection *conn, struct affy10K *el, char *tableName, int updateSize)$/;"	f
affy10KSaveToDbEscaped	hg/lib/affy10K.c	/^void affy10KSaveToDbEscaped(struct sqlConnection *conn, struct affy10K *el, char *tableName, int updateSize)$/;"	f
affy10KStaticLoad	hg/lib/affy10K.c	/^void affy10KStaticLoad(char **row, struct affy10K *ret)$/;"	f
affy10KTabOut	hg/inc/affy10K.h	84;"	d
affy120KDetails	hg/inc/affy120KDetails.h	/^struct affy120KDetails$/;"	s
affy120KDetailsCommaIn	hg/lib/affy120KDetails.c	/^struct affy120KDetails *affy120KDetailsCommaIn(char **pS, struct affy120KDetails *ret)$/;"	f
affy120KDetailsCommaOut	hg/inc/affy120KDetails.h	147;"	d
affy120KDetailsFree	hg/lib/affy120KDetails.c	/^void affy120KDetailsFree(struct affy120KDetails **pEl)$/;"	f
affy120KDetailsFreeList	hg/lib/affy120KDetails.c	/^void affy120KDetailsFreeList(struct affy120KDetails **pList)$/;"	f
affy120KDetailsLoad	hg/lib/affy120KDetails.c	/^struct affy120KDetails *affy120KDetailsLoad(char **row)$/;"	f
affy120KDetailsLoadAll	hg/lib/affy120KDetails.c	/^struct affy120KDetails *affy120KDetailsLoadAll(char *fileName) $/;"	f
affy120KDetailsLoadAllByChar	hg/lib/affy120KDetails.c	/^struct affy120KDetails *affy120KDetailsLoadAllByChar(char *fileName, char chopper) $/;"	f
affy120KDetailsLoadAllByTab	hg/inc/affy120KDetails.h	100;"	d
affy120KDetailsLoadByQuery	hg/lib/affy120KDetails.c	/^struct affy120KDetails *affy120KDetailsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
affy120KDetailsOutput	hg/lib/affy120KDetails.c	/^void affy120KDetailsOutput(struct affy120KDetails *el, FILE *f, char sep, char lastSep) $/;"	f
affy120KDetailsSaveToDb	hg/lib/affy120KDetails.c	/^void affy120KDetailsSaveToDb(struct sqlConnection *conn, struct affy120KDetails *el, char *tableName, int updateSize)$/;"	f
affy120KDetailsSaveToDbEscaped	hg/lib/affy120KDetails.c	/^void affy120KDetailsSaveToDbEscaped(struct sqlConnection *conn, struct affy120KDetails *el, char *tableName, int updateSize)$/;"	f
affy120KDetailsStaticLoad	hg/lib/affy120KDetails.c	/^void affy120KDetailsStaticLoad(char **row, struct affy120KDetails *ret)$/;"	f
affy120KDetailsTabOut	hg/inc/affy120KDetails.h	144;"	d
affy500Table	hg/lib/chromGraphFactory.c	19;"	d	file:
affy6SVTable	hg/lib/chromGraphFactory.c	21;"	d	file:
affy6Table	hg/lib/chromGraphFactory.c	20;"	d	file:
affyAllData	hg/inc/hui.h	/^    affyAllData = 3,$/;"	e	enum:affyOptEnum
affyAllExonAllData	hg/inc/hui.h	/^    affyAllExonAllData = 2,$/;"	e	enum:affyAllExonOptEnum
affyAllExonChip	hg/inc/hui.h	/^    affyAllExonChip = 0,$/;"	e	enum:affyAllExonOptEnum
affyAllExonDropDown	hg/lib/hui.c	/^void affyAllExonDropDown(char *var, char *curVal)$/;"	f
affyAllExonEnumToString	hg/lib/hui.c	/^char *affyAllExonEnumToString(enum affyAllExonOptEnum x)$/;"	f
affyAllExonOptEnum	hg/inc/hui.h	/^enum affyAllExonOptEnum {$/;"	g
affyAllExonOptions	hg/lib/hui.c	/^static char *affyAllExonOptions[] = {$/;"	v	file:
affyAllExonProbe	hg/inc/affyAllExonProbe.h	/^struct affyAllExonProbe$/;"	s
affyAllExonProbeCommaIn	hg/lib/affyAllExonProbe.c	/^struct affyAllExonProbe *affyAllExonProbeCommaIn(char **pS, struct affyAllExonProbe *ret)$/;"	f
affyAllExonProbeCommaOut	hg/inc/affyAllExonProbe.h	96;"	d
affyAllExonProbeFree	hg/lib/affyAllExonProbe.c	/^void affyAllExonProbeFree(struct affyAllExonProbe **pEl)$/;"	f
affyAllExonProbeFreeList	hg/lib/affyAllExonProbe.c	/^void affyAllExonProbeFreeList(struct affyAllExonProbe **pList)$/;"	f
affyAllExonProbeLoad	hg/lib/affyAllExonProbe.c	/^struct affyAllExonProbe *affyAllExonProbeLoad(char **row)$/;"	f
affyAllExonProbeLoadAll	hg/lib/affyAllExonProbe.c	/^struct affyAllExonProbe *affyAllExonProbeLoadAll(char *fileName) $/;"	f
affyAllExonProbeLoadAllByChar	hg/lib/affyAllExonProbe.c	/^struct affyAllExonProbe *affyAllExonProbeLoadAllByChar(char *fileName, char chopper) $/;"	f
affyAllExonProbeLoadAllByTab	hg/inc/affyAllExonProbe.h	49;"	d
affyAllExonProbeLoadByQuery	hg/lib/affyAllExonProbe.c	/^struct affyAllExonProbe *affyAllExonProbeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
affyAllExonProbeOutput	hg/lib/affyAllExonProbe.c	/^void affyAllExonProbeOutput(struct affyAllExonProbe *el, FILE *f, char sep, char lastSep) $/;"	f
affyAllExonProbeSaveToDb	hg/lib/affyAllExonProbe.c	/^void affyAllExonProbeSaveToDb(struct sqlConnection *conn, struct affyAllExonProbe *el, char *tableName, int updateSize)$/;"	f
affyAllExonProbeSaveToDbEscaped	hg/lib/affyAllExonProbe.c	/^void affyAllExonProbeSaveToDbEscaped(struct sqlConnection *conn, struct affyAllExonProbe *el, char *tableName, int updateSize)$/;"	f
affyAllExonProbeStaticLoad	hg/lib/affyAllExonProbe.c	/^void affyAllExonProbeStaticLoad(char **row, struct affyAllExonProbe *ret)$/;"	f
affyAllExonProbeTabOut	hg/inc/affyAllExonProbe.h	93;"	d
affyAllExonStringToEnum	hg/lib/hui.c	/^enum affyAllExonOptEnum affyAllExonStringToEnum(char *string)$/;"	f
affyAllExonTissue	hg/inc/hui.h	/^    affyAllExonTissue = 1,$/;"	e	enum:affyAllExonOptEnum
affyAtlas	hg/inc/affyAtlas.h	/^struct affyAtlas$/;"	s
affyAtlasCommaIn	hg/lib/affyAtlas.c	/^struct affyAtlas *affyAtlasCommaIn(char **pS, struct affyAtlas *ret)$/;"	f
affyAtlasCommaOut	hg/inc/affyAtlas.h	79;"	d
affyAtlasFree	hg/lib/affyAtlas.c	/^void affyAtlasFree(struct affyAtlas **pEl)$/;"	f
affyAtlasFreeList	hg/lib/affyAtlas.c	/^void affyAtlasFreeList(struct affyAtlas **pList)$/;"	f
affyAtlasLoad	hg/lib/affyAtlas.c	/^struct affyAtlas *affyAtlasLoad(char **row)$/;"	f
affyAtlasLoadAll	hg/lib/affyAtlas.c	/^struct affyAtlas *affyAtlasLoadAll(char *fileName) $/;"	f
affyAtlasLoadByQuery	hg/lib/affyAtlas.c	/^struct affyAtlas *affyAtlasLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
affyAtlasOutput	hg/lib/affyAtlas.c	/^void affyAtlasOutput(struct affyAtlas *el, FILE *f, char sep, char lastSep) $/;"	f
affyAtlasSaveToDb	hg/lib/affyAtlas.c	/^void affyAtlasSaveToDb(struct sqlConnection *conn, struct affyAtlas *el, char *tableName, int updateSize)$/;"	f
affyAtlasSaveToDbEscaped	hg/lib/affyAtlas.c	/^void affyAtlasSaveToDbEscaped(struct sqlConnection *conn, struct affyAtlas *el, char *tableName, int updateSize)$/;"	f
affyAtlasStaticLoad	hg/lib/affyAtlas.c	/^void affyAtlasStaticLoad(char **row, struct affyAtlas *ret)$/;"	f
affyAtlasTabOut	hg/inc/affyAtlas.h	76;"	d
affyChipType	hg/inc/hui.h	/^    affyChipType = 0,$/;"	e	enum:affyOptEnum
affyDropDown	hg/lib/hui.c	/^void affyDropDown(char *var, char *curVal)$/;"	f
affyEnumToString	hg/lib/hui.c	/^char *affyEnumToString(enum affyOptEnum x)$/;"	f
affyGenoDetails	hg/inc/affyGenoDetails.h	/^struct affyGenoDetails$/;"	s
affyGenoDetailsCommaIn	hg/lib/affyGenoDetails.c	/^struct affyGenoDetails *affyGenoDetailsCommaIn(char **pS, struct affyGenoDetails *ret)$/;"	f
affyGenoDetailsCommaOut	hg/inc/affyGenoDetails.h	118;"	d
affyGenoDetailsFree	hg/lib/affyGenoDetails.c	/^void affyGenoDetailsFree(struct affyGenoDetails **pEl)$/;"	f
affyGenoDetailsFreeList	hg/lib/affyGenoDetails.c	/^void affyGenoDetailsFreeList(struct affyGenoDetails **pList)$/;"	f
affyGenoDetailsLoad	hg/lib/affyGenoDetails.c	/^struct affyGenoDetails *affyGenoDetailsLoad(char **row)$/;"	f
affyGenoDetailsLoadAll	hg/lib/affyGenoDetails.c	/^struct affyGenoDetails *affyGenoDetailsLoadAll(char *fileName) $/;"	f
affyGenoDetailsLoadAllByChar	hg/lib/affyGenoDetails.c	/^struct affyGenoDetails *affyGenoDetailsLoadAllByChar(char *fileName, char chopper) $/;"	f
affyGenoDetailsLoadAllByTab	hg/inc/affyGenoDetails.h	96;"	d
affyGenoDetailsLoadByQuery	hg/lib/affyGenoDetails.c	/^struct affyGenoDetails *affyGenoDetailsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
affyGenoDetailsOutput	hg/lib/affyGenoDetails.c	/^void affyGenoDetailsOutput(struct affyGenoDetails *el, FILE *f, char sep, char lastSep) $/;"	f
affyGenoDetailsStaticLoad	hg/lib/affyGenoDetails.c	/^void affyGenoDetailsStaticLoad(char **row, struct affyGenoDetails *ret)$/;"	f
affyGenoDetailsTabOut	hg/inc/affyGenoDetails.h	115;"	d
affyHeur	hg/inc/dnaProbe.h	/^    int affyHeur;	\/* 1 if oligo passes affyMetrix heuristic, 0 otherwise *\/$/;"	m	struct:dnaProbe
affyId	hg/inc/affy10K.h	/^    unsigned affyId;	\/* Affymetrix SNP id *\/$/;"	m	struct:affy10K
affyId	hg/inc/affy10KDetails.h	/^    char *affyId;	\/* Affymetrix SNP id *\/$/;"	m	struct:affy10KDetails
affyId	hg/inc/affy120KDetails.h	/^    int affyId;	\/* Affymetrix SNP id *\/$/;"	m	struct:affy120KDetails
affyId	hg/inc/affyGenoDetails.h	/^    unsigned affyId;	\/* Affymetrix SNP id *\/$/;"	m	struct:affyGenoDetails
affyId	hg/inc/hui.h	/^    affyId = 1,$/;"	e	enum:affyOptEnum
affyOffset	hg/inc/affyOffset.h	/^struct affyOffset$/;"	s
affyOffsetCommaIn	hg/lib/affyOffset.c	/^struct affyOffset *affyOffsetCommaIn(char **pS, struct affyOffset *ret)$/;"	f
affyOffsetCommaOut	hg/inc/affyOffset.h	46;"	d
affyOffsetFree	hg/lib/affyOffset.c	/^void affyOffsetFree(struct affyOffset **pEl)$/;"	f
affyOffsetFreeList	hg/lib/affyOffset.c	/^void affyOffsetFreeList(struct affyOffset **pList)$/;"	f
affyOffsetLoad	hg/lib/affyOffset.c	/^struct affyOffset *affyOffsetLoad(char **row)$/;"	f
affyOffsetLoadAll	hg/lib/affyOffset.c	/^struct affyOffset *affyOffsetLoadAll(char *fileName) $/;"	f
affyOffsetOutput	hg/lib/affyOffset.c	/^void affyOffsetOutput(struct affyOffset *el, FILE *f, char sep, char lastSep) $/;"	f
affyOffsetStaticLoad	hg/lib/affyOffset.c	/^void affyOffsetStaticLoad(char **row, struct affyOffset *ret)$/;"	f
affyOffsetTabOut	hg/inc/affyOffset.h	43;"	d
affyOptEnum	hg/inc/hui.h	/^enum affyOptEnum {$/;"	g
affyOptions	hg/lib/hui.c	/^static char *affyOptions[] = {$/;"	v	file:
affyPairs	hg/inc/affyPairs.h	/^struct affyPairs$/;"	s
affyPairsCommaIn	hg/lib/affyPairs.c	/^struct affyPairs *affyPairsCommaIn(char **pS, struct affyPairs *ret)$/;"	f
affyPairsCommaOut	hg/inc/affyPairs.h	56;"	d
affyPairsFree	hg/lib/affyPairs.c	/^void affyPairsFree(struct affyPairs **pEl)$/;"	f
affyPairsFreeList	hg/lib/affyPairs.c	/^void affyPairsFreeList(struct affyPairs **pList)$/;"	f
affyPairsLoad	hg/lib/affyPairs.c	/^struct affyPairs *affyPairsLoad(char **row)$/;"	f
affyPairsLoadAll	hg/lib/affyPairs.c	/^struct affyPairs *affyPairsLoadAll(char *fileName) $/;"	f
affyPairsOutput	hg/lib/affyPairs.c	/^void affyPairsOutput(struct affyPairs *el, FILE *f, char sep, char lastSep) $/;"	f
affyPairsStaticLoad	hg/lib/affyPairs.c	/^void affyPairsStaticLoad(char **row, struct affyPairs *ret)$/;"	f
affyPairsTabOut	hg/inc/affyPairs.h	53;"	d
affyStringToEnum	hg/lib/hui.c	/^enum affyOptEnum affyStringToEnum(char *string)$/;"	f
affyTissue	hg/inc/hui.h	/^    affyTissue = 2,$/;"	e	enum:affyOptEnum
affyTransLifted	hg/inc/affyTransLifted.h	/^struct affyTransLifted$/;"	s
affyTransLiftedCommaIn	hg/lib/affyTransLifted.c	/^struct affyTransLifted *affyTransLiftedCommaIn(char **pS, struct affyTransLifted *ret)$/;"	f
affyTransLiftedCommaOut	hg/inc/affyTransLifted.h	52;"	d
affyTransLiftedFree	hg/lib/affyTransLifted.c	/^void affyTransLiftedFree(struct affyTransLifted **pEl)$/;"	f
affyTransLiftedFreeList	hg/lib/affyTransLifted.c	/^void affyTransLiftedFreeList(struct affyTransLifted **pList)$/;"	f
affyTransLiftedLoad	hg/lib/affyTransLifted.c	/^struct affyTransLifted *affyTransLiftedLoad(char **row)$/;"	f
affyTransLiftedLoadAll	hg/lib/affyTransLifted.c	/^struct affyTransLifted *affyTransLiftedLoadAll(char *fileName) $/;"	f
affyTransLiftedOutput	hg/lib/affyTransLifted.c	/^void affyTransLiftedOutput(struct affyTransLifted *el, FILE *f, char sep, char lastSep) $/;"	f
affyTransLiftedStaticLoad	hg/lib/affyTransLifted.c	/^void affyTransLiftedStaticLoad(char **row, struct affyTransLifted *ret)$/;"	f
affyTransLiftedTabOut	hg/inc/affyTransLifted.h	49;"	d
affyTranscriptome	hg/inc/affyTranscriptome.h	/^struct affyTranscriptome$/;"	s
affyTranscriptomeCommaIn	hg/lib/affyTranscriptome.c	/^struct affyTranscriptome *affyTranscriptomeCommaIn(char **pS, struct affyTranscriptome *ret)$/;"	f
affyTranscriptomeCommaOut	hg/inc/affyTranscriptome.h	92;"	d
affyTranscriptomeFree	hg/lib/affyTranscriptome.c	/^void affyTranscriptomeFree(struct affyTranscriptome **pEl)$/;"	f
affyTranscriptomeFreeList	hg/lib/affyTranscriptome.c	/^void affyTranscriptomeFreeList(struct affyTranscriptome **pList)$/;"	f
affyTranscriptomeLoad	hg/lib/affyTranscriptome.c	/^struct affyTranscriptome *affyTranscriptomeLoad(char **row)$/;"	f
affyTranscriptomeLoadAll	hg/lib/affyTranscriptome.c	/^struct affyTranscriptome *affyTranscriptomeLoadAll(char *fileName) $/;"	f
affyTranscriptomeLoadAllByChar	hg/lib/affyTranscriptome.c	/^struct affyTranscriptome *affyTranscriptomeLoadAllByChar(char *fileName, char chopper) $/;"	f
affyTranscriptomeLoadAllByTab	hg/inc/affyTranscriptome.h	45;"	d
affyTranscriptomeLoadByQuery	hg/lib/affyTranscriptome.c	/^struct affyTranscriptome *affyTranscriptomeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
affyTranscriptomeOutput	hg/lib/affyTranscriptome.c	/^void affyTranscriptomeOutput(struct affyTranscriptome *el, FILE *f, char sep, char lastSep) $/;"	f
affyTranscriptomeSaveToDb	hg/lib/affyTranscriptome.c	/^void affyTranscriptomeSaveToDb(struct sqlConnection *conn, struct affyTranscriptome *el, char *tableName, int updateSize)$/;"	f
affyTranscriptomeSaveToDbEscaped	hg/lib/affyTranscriptome.c	/^void affyTranscriptomeSaveToDbEscaped(struct sqlConnection *conn, struct affyTranscriptome *el, char *tableName, int updateSize)$/;"	f
affyTranscriptomeStaticLoad	hg/lib/affyTranscriptome.c	/^void affyTranscriptomeStaticLoad(char **row, struct affyTranscriptome *ret)$/;"	f
affyTranscriptomeTabOut	hg/inc/affyTranscriptome.h	89;"	d
aftClose	lib/annoFormatTab.c	/^static void aftClose(struct annoFormatter **pVSelf)$/;"	f	file:
aftCollect	lib/annoFormatTab.c	/^static void aftCollect(struct annoFormatter *vSelf, struct annoStreamer *stub, struct annoRow *rows)$/;"	f	file:
aftDiscard	lib/annoFormatTab.c	/^static void aftDiscard(struct annoFormatter *vSelf)$/;"	f	file:
aftFormatOne	lib/annoFormatTab.c	/^static void aftFormatOne(struct annoFormatter *vSelf)$/;"	f	file:
aftInitialize	lib/annoFormatTab.c	/^static void aftInitialize(struct annoFormatter *vSelf, struct annoGratorQuery *query)$/;"	f	file:
agBlack	hg/lib/altGraphX.c	/^    agBlack, \/* finished *\/$/;"	e	enum:agColor	file:
agCheckInternalSorting	lib/annoGrator.c	/^INLINE void agCheckInternalSorting(struct annoRow *newRow, struct annoRow *qTail)$/;"	f
agCheckPrimarySorting	lib/annoGrator.c	/^INLINE void agCheckPrimarySorting(struct annoGrator *self, struct annoRow *primaryRow)$/;"	f
agColor	hg/lib/altGraphX.c	/^enum agColor $/;"	g	file:
agDfsTopo	hg/lib/altGraphX.c	/^static void agDfsTopo(bool **em, int vertex, int *colors, int *topo, $/;"	f	file:
agFetchToEnd	lib/annoGrator.c	/^INLINE void agFetchToEnd(struct annoGrator *self, char *chrom, uint end)$/;"	f
agGray	hg/lib/altGraphX.c	/^    agGray,  \/* seen *\/$/;"	e	enum:agColor	file:
agReset	lib/annoGrator.c	/^static void agReset(struct annoGrator *self)$/;"	f	file:
agSetFilters	lib/annoGrator.c	/^static void agSetFilters(struct annoStreamer *vSelf, struct annoFilter *newFilters)$/;"	f	file:
agTranslateEdgeArray	hg/lib/altGraphX.c	/^void agTranslateEdgeArray(int *from, int *to, int *translator, int count)$/;"	f
agTranslateIntArray	hg/lib/altGraphX.c	/^void agTranslateIntArray(int *from, int *to, int *translator, int count)$/;"	f
agTranslateUCharArray	hg/lib/altGraphX.c	/^void agTranslateUCharArray(unsigned char *from, unsigned char *to, int *translator, int count)$/;"	f
agTrimToStart	lib/annoGrator.c	/^INLINE void agTrimToStart(struct annoGrator *self, char *chrom, uint start)$/;"	f
agVertSortable	hg/lib/altGraphX.c	/^struct agVertSortable$/;"	s	file:
agVertSortableCmp	hg/lib/altGraphX.c	/^int agVertSortableCmp(const void *e1, const void *e2)$/;"	f
agWhite	hg/lib/altGraphX.c	/^    agWhite, \/* unseen *\/$/;"	e	enum:agColor	file:
aggregateDropDown	hg/lib/hui.c	/^void aggregateDropDown(char *var, char *curVal)$/;"	f
aggregateLabels	hg/lib/hui.c	/^static char *aggregateLabels[] =$/;"	v	file:
aggregateValues	hg/lib/hui.c	/^static char *aggregateValues[] =$/;"	v	file:
aggvEffectToRow	hg/lib/annoGratorGpVar.c	/^static struct annoRow *aggvEffectToRow( struct annoGrator *self,$/;"	f	file:
aggvGenRows	hg/lib/annoGratorGpVar.c	/^static struct annoRow *aggvGenRows( struct annoGrator *self,$/;"	f	file:
aggvStringifyGpFx	hg/lib/annoGratorGpVar.c	/^static void aggvStringifyGpFx(char **words, struct gpFx *effect)$/;"	f	file:
agi	hg/inc/ispyTables.h	/^struct agi$/;"	s
agiCommaIn	hg/lib/ispyTables.c	/^struct agi *agiCommaIn(char **pS, struct agi *ret)$/;"	f
agiCommaOut	hg/inc/ispyTables.h	842;"	d
agiFree	hg/lib/ispyTables.c	/^void agiFree(struct agi **pEl)$/;"	f
agiFreeList	hg/lib/ispyTables.c	/^void agiFreeList(struct agi **pList)$/;"	f
agiLoadAll	hg/lib/ispyTables.c	/^struct agi *agiLoadAll(char *fileName) $/;"	f
agiLoadAllByChar	hg/lib/ispyTables.c	/^struct agi *agiLoadAllByChar(char *fileName, char chopper) $/;"	f
agiLoadAllByTab	hg/inc/ispyTables.h	795;"	d
agiLoadByQuery	hg/lib/ispyTables.c	/^struct agi *agiLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
agiLoadWithNull	hg/lib/ispyTables.c	/^struct agi *agiLoadWithNull(char **row)$/;"	f
agiOutput	hg/lib/ispyTables.c	/^void agiOutput(struct agi *el, FILE *f, char sep, char lastSep) $/;"	f
agiSaveToDb	hg/lib/ispyTables.c	/^void agiSaveToDb(struct sqlConnection *conn, struct agi *el, char *tableName, int updateSize)$/;"	f
agiSaveToDbEscaped	hg/lib/ispyTables.c	/^void agiSaveToDbEscaped(struct sqlConnection *conn, struct agi *el, char *tableName, int updateSize)$/;"	f
agiStaticLoadWithNull	hg/lib/ispyTables.c	/^void agiStaticLoadWithNull(char **row, struct agi *ret)$/;"	f
agiTabOut	hg/inc/ispyTables.h	839;"	d
agilentCgh244ATable	hg/lib/chromGraphFactory.c	28;"	d	file:
agp	hg/inc/agp.h	/^struct agp {$/;"	s
agp	hg/inc/agp.h	/^} agp;$/;"	v	typeref:struct:agp
agpAddAll	hg/lib/agp.c	/^void agpAddAll(char *agpFile, struct hash *agpHash)$/;"	f
agpFrag	hg/inc/agpFrag.h	/^struct agpFrag$/;"	s
agpFragCommaIn	hg/lib/agpFrag.c	/^struct agpFrag *agpFragCommaIn(char **pS, struct agpFrag *ret)$/;"	f
agpFragCommaOut	hg/inc/agpFrag.h	49;"	d
agpFragFree	hg/lib/agpFrag.c	/^void agpFragFree(struct agpFrag **pEl)$/;"	f
agpFragFreeList	hg/lib/agpFrag.c	/^void agpFragFreeList(struct agpFrag **pList)$/;"	f
agpFragLoad	hg/lib/agpFrag.c	/^struct agpFrag *agpFragLoad(char **row)$/;"	f
agpFragLoadAll	hg/lib/agpFrag.c	/^struct agpFrag *agpFragLoadAll(char *fileName) $/;"	f
agpFragLoadAllNotGaps	hg/lib/agpFrag.c	/^struct agpFrag *agpFragLoadAllNotGaps(char *fileName) $/;"	f
agpFragOutput	hg/lib/agpFrag.c	/^void agpFragOutput(struct agpFrag *el, FILE *f, char sep, char lastSep) $/;"	f
agpFragStaticLoad	hg/lib/agpFrag.c	/^void agpFragStaticLoad(char **row, struct agpFrag *ret)$/;"	f
agpFragTabOut	hg/inc/agpFrag.h	46;"	d
agpFree	hg/lib/agp.c	/^void agpFree(struct agp **pAgp)$/;"	f
agpFreeList	hg/lib/agp.c	/^void agpFreeList(struct agp **pList)$/;"	f
agpGap	hg/inc/agpGap.h	/^struct agpGap$/;"	s
agpGapCommaIn	hg/lib/agpGap.c	/^struct agpGap *agpGapCommaIn(char **pS, struct agpGap *ret)$/;"	f
agpGapCommaOut	hg/inc/agpGap.h	48;"	d
agpGapFree	hg/lib/agpGap.c	/^void agpGapFree(struct agpGap **pEl)$/;"	f
agpGapFreeList	hg/lib/agpGap.c	/^void agpGapFreeList(struct agpGap **pList)$/;"	f
agpGapLoad	hg/lib/agpGap.c	/^struct agpGap *agpGapLoad(char **row)$/;"	f
agpGapOutput	hg/lib/agpGap.c	/^void agpGapOutput(struct agpGap *el, FILE *f, char sep, char lastSep) $/;"	f
agpGapStaticLoad	hg/lib/agpGap.c	/^void agpGapStaticLoad(char **row, struct agpGap *ret)$/;"	f
agpGapTabOut	hg/inc/agpGap.h	45;"	d
agpHashFree	hg/lib/agp.c	/^void agpHashFree(struct hash **pAgpHash)$/;"	f
agpLoad	hg/lib/agp.c	/^struct agp *agpLoad(char **row, int ct)$/;"	f
agpLoadAll	hg/lib/agp.c	/^struct hash *agpLoadAll(char *agpFile)$/;"	f
agwdIntegrate	hg/lib/annoGrateWig.c	/^static struct annoRow *agwdIntegrate(struct annoGrator *self, struct annoRow *primaryRow,$/;"	f	file:
agxCcDfs	hg/lib/altGraphX.c	/^static void agxCcDfs(int **adjList, int *adjCounts, int *vColors, int *vComponents, $/;"	f	file:
agxColSum	hg/lib/altGraphX.c	/^int agxColSum(bool **em, unsigned char *vTypes, int vCount, int col)$/;"	f
agxConnectedComponents	hg/lib/altGraphX.c	/^struct altGraphX *agxConnectedComponents(struct altGraphX *agx)$/;"	f
agxCopyIndividualComponents	hg/lib/altGraphX.c	/^static struct altGraphX *agxCopyIndividualComponents(struct altGraphX *agx, int *vComponents, int compCount)$/;"	f	file:
agxEdgesInArea	hg/lib/altGraphX.c	/^static int agxEdgesInArea(struct altGraphX *ag, bool **em, int v1, int v2)$/;"	f	file:
agxFindClosestDownstreamVertex	hg/lib/altGraphX.c	/^int agxFindClosestDownstreamVertex(struct altGraphX *ag, bool **em, int v)$/;"	f
agxFindClosestUpstreamVertex	hg/lib/altGraphX.c	/^int agxFindClosestUpstreamVertex(struct altGraphX *ag, bool **em, int v)$/;"	f
agxIsAlt3Prime	hg/lib/altGraphX.c	/^boolean agxIsAlt3Prime(struct altGraphX *ag, bool **em,  int vs, int ve1, int ve2,$/;"	f
agxIsAlt3PrimeSoft	hg/lib/altGraphX.c	/^boolean agxIsAlt3PrimeSoft(struct altGraphX *ag, bool **em,  int vs, int ve1, int ve2,$/;"	f
agxIsAlt5Prime	hg/lib/altGraphX.c	/^boolean agxIsAlt5Prime(struct altGraphX *ag, bool **em,  int vs, int ve1, int ve2,$/;"	f
agxIsAlt5PrimeSoft	hg/lib/altGraphX.c	/^boolean agxIsAlt5PrimeSoft(struct altGraphX *ag, bool **em,  int vs1, int vs2, int ve1, int ve2,$/;"	f
agxIsCassette	hg/lib/altGraphX.c	/^boolean agxIsCassette(struct altGraphX *ag, bool **em,  int vs, int ve1, int ve2,$/;"	f
agxIsRetainIntron	hg/lib/altGraphX.c	/^boolean agxIsRetainIntron(struct altGraphX *ag, bool **em,  int vs, int ve1, int ve2,$/;"	f
agxPrintEdges	hg/lib/altGraphX.c	/^void agxPrintEdges(struct altGraphX *ag) $/;"	f
agxRowSum	hg/lib/altGraphX.c	/^static int agxRowSum(bool *em, unsigned char *vTypes, int vCount)$/;"	f	file:
ali	hg/inc/chainNet.h	/^    int ali;       \/* Bases in non-gapped alignments. *\/$/;"	m	struct:cnFill
ali	hg/inc/netAlign.h	/^    unsigned ali;	\/* Bases in gap-free alignments *\/$/;"	m	struct:netAlign
ali	hg/lib/mafGene.c	/^    struct mafAli *ali;$/;"	m	struct:exonInfo	typeref:struct:exonInfo::mafAli	file:
aliCoverage	hg/inc/txInfo.h	/^    double aliCoverage;	\/* Fraction of bases in source aligning. *\/$/;"	m	struct:txInfo
aliIdRatio	hg/inc/txInfo.h	/^    double aliIdRatio;	\/* matching\/total bases in alignment *\/$/;"	m	struct:txInfo
aliIntersectSize	hg/lib/liftOver.c	/^static int aliIntersectSize(struct chain *chain, int tStart, int tEnd)$/;"	f	file:
aliLength	hg/inc/blastTab.h	/^    unsigned aliLength;	\/* Length of alignment *\/$/;"	m	struct:blastTab
aliSig	inc/sig.h	10;"	d
alias	hg/inc/bacCloneAlias.h	/^    char *alias;	\/* BAC clone alias (internal Sanger FPC name) and STS aliases *\/$/;"	m	struct:bacCloneAlias
alias	hg/inc/bacEndAlias.h	/^    char *alias;	\/* BAC end read name *\/$/;"	m	struct:bacEndAlias
alias	hg/inc/kgAlias.h	/^    char *alias;	\/* a gene alias *\/$/;"	m	struct:kgAlias
alias	hg/inc/kgProtAlias.h	/^    char *alias;	\/* a protein alias *\/$/;"	m	struct:kgProtAlias
alias	hg/inc/stsAlias.h	/^    char *alias;	\/* STS marker name *\/$/;"	m	struct:stsAlias
alias	hg/inc/stsInfoMouseNew.h	/^    char *alias;	\/* alias, or N\/A *\/$/;"	m	struct:stsInfoMouseNew
alias	hg/inc/stsInfoRat.h	/^    char *alias;	\/* alias, or N\/A *\/$/;"	m	struct:stsInfoRat
aliases	hg/inc/knownMore.h	/^    char *aliases;	\/* Aliases if any.  Comma and space separated list *\/$/;"	m	struct:knownMore
aliases	hg/lib/genePredReader.c	/^    char **aliases;$/;"	m	struct:field	file:
aliases	inc/gff3.h	/^    struct slName *aliases; \/* A secondary names for the feature.  It is$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::slName
align	hg/inc/hui.h	/^    char *align;	\/* Which way to align. *\/$/;"	m	struct:controlGrid
alignB	hg/inc/genomicDups.h	/^    unsigned alignB;	\/* bases Aligned *\/$/;"	m	struct:genomicDups
alignB	hg/inc/genomicSuperDups.h	/^    unsigned alignB;	\/* bases Aligned *\/$/;"	m	struct:genomicSuperDups
alignChrom	hg/inc/alignInfo.h	/^    char *alignChrom;	\/* chromosome for aligned species *\/$/;"	m	struct:alignInfo
alignChromEnd	hg/inc/alignInfo.h	/^    unsigned alignChromEnd;	\/* End position in chromosome for aligned species *\/$/;"	m	struct:alignInfo
alignChromStart	hg/inc/alignInfo.h	/^    unsigned alignChromStart;	\/* Start position in chromosome for aligned species *\/$/;"	m	struct:alignInfo
alignComponents	jkOwnLib/gfBlatLib.c	/^static boolean alignComponents(struct gfRange *combined, struct ssBundle *bun, $/;"	f	file:
alignInfo	hg/inc/alignInfo.h	/^struct alignInfo$/;"	s
alignInfoCommaIn	hg/lib/alignInfo.c	/^struct alignInfo *alignInfoCommaIn(char **pS, struct alignInfo *ret)$/;"	f
alignInfoCommaOut	hg/inc/alignInfo.h	65;"	d
alignInfoFree	hg/lib/alignInfo.c	/^void alignInfoFree(struct alignInfo **pEl)$/;"	f
alignInfoFreeList	hg/lib/alignInfo.c	/^void alignInfoFreeList(struct alignInfo **pList)$/;"	f
alignInfoLoad	hg/lib/alignInfo.c	/^struct alignInfo *alignInfoLoad(char **row)$/;"	f
alignInfoLoadAll	hg/lib/alignInfo.c	/^struct alignInfo *alignInfoLoadAll(char *fileName) $/;"	f
alignInfoLoadAllByChar	hg/lib/alignInfo.c	/^struct alignInfo *alignInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
alignInfoLoadAllByTab	hg/inc/alignInfo.h	43;"	d
alignInfoOutput	hg/lib/alignInfo.c	/^void alignInfoOutput(struct alignInfo *el, FILE *f, char sep, char lastSep) $/;"	f
alignInfoStaticLoad	hg/lib/alignInfo.c	/^void alignInfoStaticLoad(char **row, struct alignInfo *ret)$/;"	f
alignInfoTabOut	hg/inc/alignInfo.h	62;"	d
alignL	hg/inc/genomicSuperDups.h	/^    unsigned alignL;	\/* spaces\/positions in alignment *\/$/;"	m	struct:genomicSuperDups
alignSeqSizes	hg/lib/alignSeqSizes.c	/^struct alignSeqSizes$/;"	s	file:
alignSeqSizesFree	hg/lib/alignSeqSizes.c	/^void alignSeqSizesFree(struct alignSeqSizes** assPtr)$/;"	f
alignSeqSizesMustGetQuery	hg/lib/alignSeqSizes.c	/^int alignSeqSizesMustGetQuery(struct alignSeqSizes* ass, char *name)$/;"	f
alignSeqSizesMustGetTarget	hg/lib/alignSeqSizes.c	/^int alignSeqSizesMustGetTarget(struct alignSeqSizes* ass, char *name)$/;"	f
alignSeqSizesNew	hg/lib/alignSeqSizes.c	/^struct alignSeqSizes* alignSeqSizesNew(char *querySizesFile, char *querySizesStr,$/;"	f
aligned	hg/inc/transMapSrc.h	/^    float aligned;	\/* fraction of sequence aligned *\/$/;"	m	struct:transMapSrc
alignedBases	inc/splatAli.h	/^    char *alignedBases;	\/* Tag bases - in upper case for match, -\/^ for insert\/delete *\/$/;"	m	struct:splatAli
alignfile	hg/inc/genomicSuperDups.h	/^    char *alignfile;	\/* alignment file path *\/$/;"	m	struct:genomicSuperDups
alignment	hg/inc/axtInfo.h	/^    char alignment[36];	\/* name of alignment *\/$/;"	m	struct:axtInfo
alignments	inc/maf.h	/^    struct mafAli *alignments;	\/* Possibly empty list of alignments. *\/$/;"	m	struct:mafFile	typeref:struct:mafFile::mafAli
allArrays	hg/inc/microarray.h	/^    struct maGrouping *allArrays;$/;"	m	struct:microarrayGroups	typeref:struct:microarrayGroups::maGrouping
allBitsSetInFile	lib/udc.c	/^static boolean allBitsSetInFile(int bitStart, int bitEnd, int partOffset, Bits *bits)$/;"	f	file:
allCells	inc/pairHmm.h	/^    struct phmmMommy *allCells; \/* Memory for all matrices. *\/$/;"	m	struct:phmmMatrix	typeref:struct:phmmMatrix::phmmMommy
allClear	lib/spaceSaver.c	/^static boolean allClear(bool *b, int count)$/;"	f	file:
allDashes	hg/lib/mafGene.c	/^static boolean allDashes(char *seq)$/;"	f	file:
allDna	inc/itsa.h	/^    char *allDna;	\/* All DNA from each contig\/chromosome with zero separators. *\/$/;"	m	struct:itsa
allDna	inc/splix.h	/^    char *allDna;	\/* All DNA from each contig\/chromosome with zero separators. *\/$/;"	m	struct:splix
allDna	inc/sufa.h	/^    char *allDna;	\/* All DNA from each contig\/chromosome with zero separators. *\/$/;"	m	struct:sufa
allDna	inc/sufx.h	/^    char *allDna;	\/* All DNA from each contig\/chromosome with zero separators. *\/$/;"	m	struct:sufx
allKeysPrefix	hg/lib/hgFind.c	/^static boolean allKeysPrefix(char **keys, int keyCount, char *text)$/;"	f	file:
allOneLine	hg/inc/genoLay.h	/^    boolean allOneLine;			\/* True if draw all on one line. *\/$/;"	m	struct:genoLay
allPos	hg/lib/mafGene.c	/^static char *allPos(struct speciesInfo *si)$/;"	f	file:
allSame	hg/lib/qaSeq.c	/^static boolean allSame(BYTE *b, int size, BYTE val)$/;"	f	file:
allSameCluster	lib/boxClump.c	/^static boolean allSameCluster(struct boxRef *refList)$/;"	f	file:
allScores	inc/pairHmm.h	/^    int *allScores;	      \/* Memory for two rows of scores. *\/$/;"	m	struct:phmmMatrix
allStartBy	lib/boxClump.c	/^static boolean allStartBy(struct boxRef *refList, int qStart, int tStart)$/;"	f	file:
allWhite	hg/lib/chromGraphFactory.c	/^static boolean allWhite(char *s)$/;"	f	file:
allele	hg/inc/variant.h	/^struct allele   \/\/ a single allele in a variant. $/;"	s
allele1	hg/inc/dbSnpRs.h	/^    char *allele1;	\/* the sequence of the first allele *\/$/;"	m	struct:dbSnpRs
allele1	hg/inc/hapmapAlleles.h	/^    char allele1[2];	\/* This allele has been observed *\/$/;"	m	struct:hapmapAlleles
allele1	hg/inc/hapmapAllelesCombined.h	/^    char allele1[2];	\/* This allele has been observed *\/$/;"	m	struct:hapmapAllelesCombined
allele1	hg/inc/hapmapAllelesSummary.h	/^    char allele1[2];	\/* This allele has been observed *\/$/;"	m	struct:hapmapAllelesSummary
allele1	hg/inc/hapmapSnps.h	/^    char allele1[2];	\/* This allele has been observed *\/$/;"	m	struct:hapmapSnps
allele1	hg/inc/hapmapSnpsCombined.h	/^    char allele1[2];	\/* This allele has been observed *\/$/;"	m	struct:hapmapSnpsCombined
allele1	hg/inc/orthoAlleles.h	/^    char allele1;	\/* A, C, G, or T *\/$/;"	m	struct:orthoAlleles
allele1Count	hg/inc/orthoAlleles.h	/^    unsigned allele1Count;	\/* From 1 to sample size *\/$/;"	m	struct:orthoAlleles
allele1CountCEU	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele1CountCEU;	\/* allele1 count for the CEU population *\/$/;"	m	struct:hapmapAllelesCombined
allele1CountCHB	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele1CountCHB;	\/* allele1 count for the CHB population *\/$/;"	m	struct:hapmapAllelesCombined
allele1CountJPT	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele1CountJPT;	\/* allele1 count for the JPT population *\/$/;"	m	struct:hapmapAllelesCombined
allele1CountYRI	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele1CountYRI;	\/* allele1 count for the YRI population *\/$/;"	m	struct:hapmapAllelesCombined
allele1Freq	hg/inc/orthoAlleles.h	/^    float allele1Freq;	\/* From 0.0 to 1.0 *\/$/;"	m	struct:orthoAlleles
allele2	hg/inc/dbSnpRs.h	/^    char *allele2;	\/* the sequence of the second allele *\/$/;"	m	struct:dbSnpRs
allele2	hg/inc/hapmapAlleles.h	/^    char *allele2;	\/* This allele may not have been observed *\/$/;"	m	struct:hapmapAlleles
allele2	hg/inc/hapmapAllelesCombined.h	/^    char *allele2;	\/* This allele may not have been observed *\/$/;"	m	struct:hapmapAllelesCombined
allele2	hg/inc/hapmapAllelesSummary.h	/^    char *allele2;	\/* This allele may not have been observed *\/$/;"	m	struct:hapmapAllelesSummary
allele2	hg/inc/hapmapSnps.h	/^    char *allele2;	\/* This allele may not have been observed *\/$/;"	m	struct:hapmapSnps
allele2	hg/inc/hapmapSnpsCombined.h	/^    char *allele2;	\/* This allele may not have been observed *\/$/;"	m	struct:hapmapSnpsCombined
allele2	hg/inc/orthoAlleles.h	/^    char allele2;	\/* A, C, G, or T, different from allele1 *\/$/;"	m	struct:orthoAlleles
allele2Count	hg/inc/orthoAlleles.h	/^    unsigned allele2Count;	\/* sample size - allele1Count *\/$/;"	m	struct:orthoAlleles
allele2CountCEU	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele2CountCEU;	\/* allele2 count for the CEU population *\/$/;"	m	struct:hapmapAllelesCombined
allele2CountCHB	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele2CountCHB;	\/* allele2 count for the CHB population *\/$/;"	m	struct:hapmapAllelesCombined
allele2CountJPT	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele2CountJPT;	\/* allele2 count for the JPT population *\/$/;"	m	struct:hapmapAllelesCombined
allele2CountYRI	hg/inc/hapmapAllelesCombined.h	/^    unsigned allele2CountYRI;	\/* allele2 count for the YRI population *\/$/;"	m	struct:hapmapAllelesCombined
allele2Freq	hg/inc/orthoAlleles.h	/^    float allele2Freq;	\/* 1.0 - allele1Freq *\/$/;"	m	struct:orthoAlleles
alleleClip	hg/lib/variant.c	/^struct allele  *alleleClip(struct allele *allele, int sx, int ex)$/;"	f
alleleCount	hg/inc/pgSnp.h	/^    int alleleCount;	\/* number of alleles *\/$/;"	m	struct:pgSnp
alleleCount	hg/inc/snp125CodingCoordless.h	/^    int alleleCount;	\/* Number of annotated alleles for SNP *\/$/;"	m	struct:snp125CodingCoordless
alleleCount	inc/vcf.h	/^    int alleleCount;		\/\/ Number of alleles (reference + alternates)$/;"	m	struct:vcfRecord
alleleCountsFromVcfRecord	hg/lib/pgSnp.c	/^static char *alleleCountsFromVcfRecord(struct vcfRecord *rec, int alDescCount)$/;"	f	file:
alleleFreq	hg/inc/pgSnp.h	/^    char *alleleFreq;	\/* comma separated list of frequency of each allele *\/$/;"	m	struct:pgSnp
alleleFreqCount	hg/inc/snp132Ext.h	/^    int alleleFreqCount;	\/* Number of observed alleles with frequency data *\/$/;"	m	struct:snp132Ext
alleleFreqs	hg/inc/alleleFreqs.h	/^struct alleleFreqs$/;"	s
alleleFreqs	hg/inc/snp132Ext.h	/^    float *alleleFreqs;	\/* Allele frequencies *\/$/;"	m	struct:snp132Ext
alleleFreqsCommaIn	hg/lib/alleleFreqs.c	/^struct alleleFreqs *alleleFreqsCommaIn(char **pS, struct alleleFreqs *ret)$/;"	f
alleleFreqsCommaOut	hg/inc/alleleFreqs.h	99;"	d
alleleFreqsFree	hg/lib/alleleFreqs.c	/^void alleleFreqsFree(struct alleleFreqs **pEl)$/;"	f
alleleFreqsFreeList	hg/lib/alleleFreqs.c	/^void alleleFreqsFreeList(struct alleleFreqs **pList)$/;"	f
alleleFreqsLoad	hg/lib/alleleFreqs.c	/^struct alleleFreqs *alleleFreqsLoad(char **row)$/;"	f
alleleFreqsLoadAll	hg/lib/alleleFreqs.c	/^struct alleleFreqs *alleleFreqsLoadAll(char *fileName) $/;"	f
alleleFreqsLoadAllByChar	hg/lib/alleleFreqs.c	/^struct alleleFreqs *alleleFreqsLoadAllByChar(char *fileName, char chopper) $/;"	f
alleleFreqsLoadAllByTab	hg/inc/alleleFreqs.h	52;"	d
alleleFreqsLoadByQuery	hg/lib/alleleFreqs.c	/^struct alleleFreqs *alleleFreqsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
alleleFreqsOutput	hg/lib/alleleFreqs.c	/^void alleleFreqsOutput(struct alleleFreqs *el, FILE *f, char sep, char lastSep) $/;"	f
alleleFreqsSaveToDb	hg/lib/alleleFreqs.c	/^void alleleFreqsSaveToDb(struct sqlConnection *conn, struct alleleFreqs *el, char *tableName, int updateSize)$/;"	f
alleleFreqsSaveToDbEscaped	hg/lib/alleleFreqs.c	/^void alleleFreqsSaveToDbEscaped(struct sqlConnection *conn, struct alleleFreqs *el, char *tableName, int updateSize)$/;"	f
alleleFreqsStaticLoad	hg/lib/alleleFreqs.c	/^void alleleFreqsStaticLoad(char **row, struct alleleFreqs *ret)$/;"	f
alleleFreqsTabOut	hg/inc/alleleFreqs.h	96;"	d
alleleFrequency	hg/inc/polyGenotype.h	/^    float alleleFrequency;	\/* frequency of homozygosity *\/$/;"	m	struct:polyGenotype
alleleNs	hg/inc/snp132Ext.h	/^    float *alleleNs;	\/* Count of chromosomes (2N) on which each allele was observed. Note: this is extrapolated by dbSNP from submitted frequencies and total sample 2N, and is not always an integer. *\/$/;"	m	struct:snp132Ext
alleleScores	hg/inc/pgSnp.h	/^    char *alleleScores;	\/* comma separated list of quality scores *\/$/;"	m	struct:pgSnp
alleles	hg/inc/snp125CodingCoordless.h	/^    char **alleles;	\/* Observed nucleotide alleles corresponding to funcCodes *\/$/;"	m	struct:snp125CodingCoordless
alleles	hg/inc/snp132Ext.h	/^    char **alleles;	\/* Observed alleles for which frequency data are available *\/$/;"	m	struct:snp132Ext
alleles	hg/inc/variant.h	/^    struct allele *alleles;	\/* alleles *\/$/;"	m	struct:variant	typeref:struct:variant::allele
alleles	inc/vcf.h	/^    char **alleles;		\/\/ Alleles: reference first then alternate alleles$/;"	m	struct:vcfRecord
allignAdd	lib/localmem.c	/^    size_t allignAdd;$/;"	m	struct:lm	file:
allignMask	lib/localmem.c	/^    size_t allignMask;$/;"	m	struct:lm	file:
alloc	inc/memalloc.h	/^    void * (*alloc)(size_t size);$/;"	m	struct:memHandler
allocBedEnz	hg/lib/cutter.c	/^struct bed *allocBedEnz(struct cutter *enz, char *seqName, int seqPos, char strand)$/;"	f
allocCount	inc/bbiFile.h	/^    int allocCount;$/;"	m	struct:bbiSumOutStream
allocNt4	lib/nt4.c	/^static struct nt4Seq *allocNt4(size_t baseCount, char *name)$/;"	f	file:
allocPatSpaceLists	jkOwnLib/patSpace.c	/^static int allocPatSpaceLists(struct patSpace *ps)$/;"	f	file:
allocated	inc/genoFind.h	/^    void *allocated;                     \/* Storage space for all lists. *\/$/;"	m	struct:genoFind
allocated	jkOwnLib/patSpace.c	/^    psBits *allocated;                   \/* Storage space for all lists. *\/$/;"	m	struct:patSpace	file:
alloced	lib/keys.c	/^    int alloced;          \/* Number allocated in table. *\/$/;"	m	struct:kvt	file:
allocedEdges	inc/phyloTree.h	/^    int allocedEdges;$/;"	m	struct:phyloTree
allowOneMismatch	inc/genoFind.h	/^    bool allowOneMismatch;		 \/* Allow a single mismatch? *\/$/;"	m	struct:genoFind
allowedFrameFeature	hg/lib/genePred.c	/^static boolean allowedFrameFeature(struct gffLine *gl, boolean isGtf)$/;"	f	file:
allowsNull	hg/inc/jksql.h	/^    boolean allowsNull;   \/* can the field be NULL? *\/$/;"	m	struct:sqlFieldInfo
allpredictions	hg/inc/allpredictions.h	/^struct allpredictions$/;"	s
allpredictionsCommaIn	hg/lib/allpredictions.c	/^struct allpredictions *allpredictionsCommaIn(char **pS, struct allpredictions *ret)$/;"	f
allpredictionsCommaOut	hg/inc/allpredictions.h	61;"	d
allpredictionsFree	hg/lib/allpredictions.c	/^void allpredictionsFree(struct allpredictions **pEl)$/;"	f
allpredictionsFreeList	hg/lib/allpredictions.c	/^void allpredictionsFreeList(struct allpredictions **pList)$/;"	f
allpredictionsLoad	hg/lib/allpredictions.c	/^struct allpredictions *allpredictionsLoad(char **row)$/;"	f
allpredictionsLoadAll	hg/lib/allpredictions.c	/^struct allpredictions *allpredictionsLoadAll(char *fileName) $/;"	f
allpredictionsLoadAllByChar	hg/lib/allpredictions.c	/^struct allpredictions *allpredictionsLoadAllByChar(char *fileName, char chopper) $/;"	f
allpredictionsLoadAllByTab	hg/inc/allpredictions.h	39;"	d
allpredictionsOutput	hg/lib/allpredictions.c	/^void allpredictionsOutput(struct allpredictions *el, FILE *f, char sep, char lastSep) $/;"	f
allpredictionsStaticLoad	hg/lib/allpredictions.c	/^void allpredictionsStaticLoad(char **row, struct allpredictions *ret)$/;"	f
allpredictionsTabOut	hg/inc/allpredictions.h	58;"	d
alt3Prime	hg/inc/altGraphX.h	/^    alt3Prime,       \/* 1 *\/$/;"	e	enum:altSpliceType
alt3PrimeSoft	hg/inc/altGraphX.h	/^    alt3PrimeSoft,   \/* 7 Alt Poly Adenlation sites *\/$/;"	e	enum:altSpliceType
alt5Prime	hg/inc/altGraphX.h	/^    alt5Prime,       \/* 0 *\/$/;"	e	enum:altSpliceType
alt5PrimeSoft	hg/inc/altGraphX.h	/^    alt5PrimeSoft,   \/* 8 Alt transcription start *\/$/;"	e	enum:altSpliceType
altCassette	hg/inc/altGraphX.h	/^    altCassette,     \/* 2 *\/$/;"	e	enum:altSpliceType
altColorB	hg/inc/trackDb.h	/^    unsigned char altColorB;	\/* Light color blue component 0-255 *\/$/;"	m	struct:trackDb
altColorB	hg/inc/trackTable.h	/^    unsigned char altColorB;	\/* Light color blue component 0-255 *\/$/;"	m	struct:trackTable
altColorG	hg/inc/trackDb.h	/^    unsigned char altColorG;	\/* Light color green component 0-255 *\/$/;"	m	struct:trackDb
altColorG	hg/inc/trackTable.h	/^    unsigned char altColorG;	\/* Light color green component 0-255 *\/$/;"	m	struct:trackTable
altColorLabels	lib/gifLabel.c	/^static struct memGfx *altColorLabels(char **labels, int labelCount, int width)$/;"	f	file:
altColorR	hg/inc/trackDb.h	/^    unsigned char altColorR;	\/* Light color red component 0-255 *\/$/;"	m	struct:trackDb
altColorR	hg/inc/trackTable.h	/^    unsigned char altColorR;	\/* Light color red component 0-255 *\/$/;"	m	struct:trackTable
altControl	hg/inc/altGraphX.h	/^    altControl,      \/* 6 *\/$/;"	e	enum:altSpliceType
altDefs	inc/vcf.h	/^    struct vcfInfoDef *altDefs;	\/\/ Header's defs of symbolic alternate alleles (e.g. DEL, INS)$/;"	m	struct:vcfFile	typeref:struct:vcfFile::vcfInfoDef
altGraph	hg/inc/altGraph.h	/^struct altGraph$/;"	s
altGraph	hg/inc/ggDbRep.h	/^struct altGraph$/;"	s
altGraphCassetteConfForEdge	hg/lib/altGraphX.c	/^float altGraphCassetteConfForEdge(struct altGraphX *ag, int eIx, float prior)$/;"	f
altGraphCommaIn	hg/lib/altGraph.c	/^struct altGraph *altGraphCommaIn(char **pS, struct altGraph *ret)$/;"	f
altGraphCommaIn	hg/lib/ggDbRep.c	/^struct altGraph *altGraphCommaIn(char **pS)$/;"	f
altGraphCommaOut	hg/inc/altGraph.h	82;"	d
altGraphCommaOut	hg/inc/ggDbRep.h	51;"	d
altGraphConfidenceForEdge	hg/lib/altGraphX.c	/^int altGraphConfidenceForEdge(struct altGraphX *ag, int eIx)$/;"	f
altGraphFree	hg/lib/altGraph.c	/^void altGraphFree(struct altGraph **pEl)$/;"	f
altGraphFree	hg/lib/ggDbRep.c	/^void altGraphFree(struct altGraph **pEl)$/;"	f
altGraphFreeList	hg/lib/altGraph.c	/^void altGraphFreeList(struct altGraph **pList)$/;"	f
altGraphFreeList	hg/lib/ggDbRep.c	/^void altGraphFreeList(struct altGraph **pList)$/;"	f
altGraphGetExonCassette	hg/lib/altGraphX.c	/^struct bed *altGraphGetExonCassette(struct altGraphX *ag, int eIx)$/;"	f
altGraphLoad	hg/lib/altGraph.c	/^struct altGraph *altGraphLoad(char **row)$/;"	f
altGraphLoad	hg/lib/ggDbRep.c	/^struct altGraph *altGraphLoad(char **row)$/;"	f
altGraphLoadAll	hg/lib/altGraph.c	/^struct altGraph *altGraphLoadAll(char *fileName) $/;"	f
altGraphLoadByQuery	hg/lib/altGraph.c	/^struct altGraph *altGraphLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
altGraphNumAltSplices	hg/lib/altGraph.c	/^int altGraphNumAltSplices(struct altGraph *ag)$/;"	f
altGraphOutput	hg/lib/altGraph.c	/^void altGraphOutput(struct altGraph *el, FILE *f, char sep, char lastSep) $/;"	f
altGraphOutput	hg/lib/ggDbRep.c	/^void altGraphOutput(struct altGraph *el, FILE *f, char sep, char lastSep) $/;"	f
altGraphSaveToDb	hg/lib/altGraph.c	/^void altGraphSaveToDb(struct sqlConnection *conn, struct altGraph *el, char *tableName, int updateSize)$/;"	f
altGraphSaveToDbEscaped	hg/lib/altGraph.c	/^void altGraphSaveToDbEscaped(struct sqlConnection *conn, struct altGraph *el, char *tableName, int updateSize)$/;"	f
altGraphTabOut	hg/inc/altGraph.h	79;"	d
altGraphTabOut	hg/inc/ggDbRep.h	48;"	d
altGraphTimesNotSeenEdge	hg/lib/altGraphX.c	/^int altGraphTimesNotSeenEdge(struct altGraphX *ag, int eIx) $/;"	f
altGraphTimesSeenEdge	hg/lib/altGraphX.c	/^int altGraphTimesSeenEdge(struct altGraphX *ag, int eIx) $/;"	f
altGraphX	hg/inc/altGraphX.h	/^struct altGraphX$/;"	s
altGraphXArrangeVertsByOrder	hg/lib/altGraphX.c	/^void altGraphXArrangeVertsByOrder(struct altGraphX *ag, int *translator)$/;"	f
altGraphXClone	hg/lib/altGraphX.c	/^struct altGraphX *altGraphXClone(struct altGraphX *ag)$/;"	f
altGraphXCommaIn	hg/lib/altGraphX.c	/^struct altGraphX *altGraphXCommaIn(char **pS, struct altGraphX *ret)$/;"	f
altGraphXCommaOut	hg/inc/altGraphX.h	154;"	d
altGraphXCreateEdgeMatrix	hg/lib/altGraphX.c	/^bool **altGraphXCreateEdgeMatrix(struct altGraphX *ag)$/;"	f
altGraphXCreateEdgeTypePlusOneMatrix	hg/lib/altGraphX.c	/^static UBYTE  **altGraphXCreateEdgeTypePlusOneMatrix(struct altGraphX *ag)$/;"	f	file:
altGraphXDrawPack	hg/lib/altGraphX.c	/^void altGraphXDrawPack(struct altGraphX *agList, struct spaceSaver *ssList, $/;"	f
altGraphXEdgeObserved	hg/lib/altGraphX.c	/^boolean altGraphXEdgeObserved(struct altGraphX *ag, int *seen, int *seenCount, int mrnaIx)$/;"	f
altGraphXEdgeSeen	hg/lib/altGraphX.c	/^boolean altGraphXEdgeSeen(struct altGraphX *ag, int *seen, int *seenCount, int mrnaIx)$/;"	f
altGraphXEdgeType	hg/lib/altGraphX.c	/^enum ggEdgeType altGraphXEdgeType(struct altGraphX *ag, int edge)$/;"	f
altGraphXEdgeVertexType	hg/lib/altGraphX.c	/^enum ggEdgeType altGraphXEdgeVertexType(struct altGraphX *ag, int v1, int v2)$/;"	f
altGraphXEnlargeExons	hg/lib/altGraphX.c	/^void altGraphXEnlargeExons(struct altGraphX *ag)$/;"	f
altGraphXFillInJunctions	hg/lib/altGraphX.c	/^void altGraphXFillInJunctions(struct spliceEdge *egList, struct altGraphX *ag, $/;"	f
altGraphXFree	hg/lib/altGraphX.c	/^void altGraphXFree(struct altGraphX **pEl)$/;"	f
altGraphXFreeEdgeMatrix	hg/lib/altGraphX.c	/^void altGraphXFreeEdgeMatrix(bool ***pEm, int vertCount)$/;"	f
altGraphXFreeList	hg/lib/altGraphX.c	/^void altGraphXFreeList(struct altGraphX **pList)$/;"	f
altGraphXGetEdgeNum	hg/lib/altGraphX.c	/^int altGraphXGetEdgeNum(struct altGraphX *ag, int v1, int v2)$/;"	f
altGraphXLayout	hg/lib/altGraphX.c	/^void altGraphXLayout(struct altGraphX *agList, int seqStart, int seqEnd, $/;"	f
altGraphXLayoutEdges	hg/lib/altGraphX.c	/^void altGraphXLayoutEdges(struct spliceEdge *egList, struct altGraphX *ag, int seqStart, int seqEnd,$/;"	f
altGraphXLoad	hg/lib/altGraphX.c	/^struct altGraphX *altGraphXLoad(char **row)$/;"	f
altGraphXLoadAll	hg/lib/altGraphX.c	/^struct altGraphX *altGraphXLoadAll(char *fileName) $/;"	f
altGraphXLoadByQuery	hg/lib/altGraphX.c	/^struct altGraphX *altGraphXLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
altGraphXNumAltSplices	hg/lib/altGraphX.c	/^int altGraphXNumAltSplices(struct altGraphX *ag)$/;"	f
altGraphXOutput	hg/lib/altGraphX.c	/^void altGraphXOutput(struct altGraphX *el, FILE *f, char sep, char lastSep) $/;"	f
altGraphXReverseComplement	hg/lib/altGraphX.c	/^void altGraphXReverseComplement(struct altGraphX *ag)$/;"	f
altGraphXSaveToDb	hg/lib/altGraphX.c	/^void altGraphXSaveToDb(struct sqlConnection *conn, struct altGraphX *el, char *tableName, int updateSize)$/;"	f
altGraphXSaveToDbEscaped	hg/lib/altGraphX.c	/^void altGraphXSaveToDbEscaped(struct sqlConnection *conn, struct altGraphX *el, char *tableName, int updateSize)$/;"	f
altGraphXTabOut	hg/inc/altGraphX.h	151;"	d
altGraphXToBed	hg/lib/altGraphX.c	/^struct bed *altGraphXToBed(struct altGraphX *ag)$/;"	f
altGraphXToEdges	hg/lib/altGraphX.c	/^struct spliceEdge *altGraphXToEdges(struct altGraphX *ag)$/;"	f
altGraphXToGG	hg/lib/geneGraph.c	/^struct geneGraph *altGraphXToGG(struct altGraphX *ag)$/;"	f
altGraphXTopologicalSort	hg/lib/altGraphX.c	/^void altGraphXTopologicalSort(struct altGraphX *ag)$/;"	f
altGraphXVertPosSort	hg/lib/altGraphX.c	/^void altGraphXVertPosSort(struct altGraphX *ag)$/;"	f
altGraphXoffset	hg/lib/altGraphX.c	/^void altGraphXoffset(struct altGraphX *ag, int offset)$/;"	f
altIdentity	hg/inc/altGraphX.h	/^    altIdentity,     \/* 4 *\/$/;"	e	enum:altSpliceType
altMutExclusive	hg/inc/altGraphX.h	/^    altMutExclusive  \/* 9 Mutally exlcusive. *\/$/;"	e	enum:altSpliceType
altOther	hg/inc/altGraphX.h	/^    altOther,        \/* 5 *\/$/;"	e	enum:altSpliceType
altRetInt	hg/inc/altGraphX.h	/^    altRetInt,       \/* 3 *\/$/;"	e	enum:altSpliceType
altSpliceType	hg/inc/altGraphX.h	/^enum altSpliceType$/;"	g
alternate	hg/inc/dbSnpRs.h	/^    char *alternate;	\/* the sequence of the alternate allele *\/$/;"	m	struct:dbSnpRs
alxSig	inc/sig.h	13;"	d
aminoAcidTable	lib/dnautil.c	/^struct aminoAcidTable aminoAcidTable[] = $/;"	v	typeref:struct:aminoAcidTable
aminoAcidTable	lib/dnautil.c	/^struct aminoAcidTable$/;"	s	file:
anInt	inc/annoFilter.h	/^    long long anInt;$/;"	m	union:aNumber
ancestralAllele	hg/inc/hgdpGeo.h	/^    char ancestralAllele;	\/* Ancestral allele on forward strand of reference genome assembly *\/$/;"	m	struct:hgdpGeo
anchorTermRegex	hg/lib/hgFindSpecCustom.c	/^static void anchorTermRegex(struct hgFindSpec *hfs)$/;"	f	file:
ancientRref	hg/inc/ancientRref.h	/^struct ancientRref$/;"	s
ancientRrefCommaIn	hg/lib/ancientRref.c	/^struct ancientRref *ancientRrefCommaIn(char **pS, struct ancientRref *ret)$/;"	f
ancientRrefCommaOut	hg/inc/ancientRref.h	50;"	d
ancientRrefFree	hg/lib/ancientRref.c	/^void ancientRrefFree(struct ancientRref **pEl)$/;"	f
ancientRrefFreeList	hg/lib/ancientRref.c	/^void ancientRrefFreeList(struct ancientRref **pList)$/;"	f
ancientRrefLoad	hg/lib/ancientRref.c	/^struct ancientRref *ancientRrefLoad(char **row)$/;"	f
ancientRrefLoadAll	hg/lib/ancientRref.c	/^struct ancientRref *ancientRrefLoadAll(char *fileName) $/;"	f
ancientRrefOutput	hg/lib/ancientRref.c	/^void ancientRrefOutput(struct ancientRref *el, FILE *f, char sep, char lastSep) $/;"	f
ancientRrefStaticLoad	hg/lib/ancientRref.c	/^void ancientRrefStaticLoad(char **row, struct ancientRref *ret)$/;"	f
ancientRrefTabOut	hg/inc/ancientRref.h	47;"	d
andHits	hg/lib/hgFind.c	/^static void andHits(struct hash *aHash, struct slName *aList, $/;"	f	file:
ann	inc/gff3.h	/^    struct gff3Ann *ann;       \/* reference to object *\/$/;"	m	struct:gff3AnnRef	typeref:struct:gff3AnnRef::gff3Ann
annName	hg/inc/affyAtlas.h	/^    char *annName;	\/* analysis name, array name? *\/$/;"	m	struct:affyAtlas
annoColumn	inc/annoColumn.h	/^struct annoColumn$/;"	s
annoColumnCloneList	lib/annoColumn.c	/^struct annoColumn *annoColumnCloneList(struct annoColumn *list)$/;"	f
annoColumnFreeList	lib/annoColumn.c	/^void annoColumnFreeList(struct annoColumn **pList)$/;"	f
annoColumnsFromAsObject	lib/annoColumn.c	/^struct annoColumn *annoColumnsFromAsObject(struct asObject *asObj)$/;"	f
annoFilter	inc/annoFilter.h	/^struct annoFilter$/;"	s
annoFilterCloneList	lib/annoFilter.c	/^struct annoFilter *annoFilterCloneList(struct annoFilter *list)$/;"	f
annoFilterDouble	lib/annoFilter.c	/^static boolean annoFilterDouble(struct annoFilter *filter, double val)$/;"	f	file:
annoFilterFreeList	lib/annoFilter.c	/^void annoFilterFreeList(struct annoFilter **pList)$/;"	f
annoFilterLongLong	lib/annoFilter.c	/^static boolean annoFilterLongLong(struct annoFilter *filter, long long val)$/;"	f	file:
annoFilterOp	inc/annoFilter.h	/^enum annoFilterOp$/;"	g
annoFilterRowFails	lib/annoFilter.c	/^boolean annoFilterRowFails(struct annoFilter *filterList, char **row, int rowSize,$/;"	f
annoFilterWigValueFails	lib/annoFilter.c	/^boolean annoFilterWigValueFails(struct annoFilter *filterList, double value,$/;"	f
annoFiltersFromAsObject	lib/annoFilter.c	/^struct annoFilter *annoFiltersFromAsObject(struct asObject *asObj)$/;"	f
annoFormatTab	lib/annoFormatTab.c	/^struct annoFormatTab$/;"	s	file:
annoFormatTabNew	lib/annoFormatTab.c	/^struct annoFormatter *annoFormatTabNew(char *fileName)$/;"	f
annoFormatter	inc/annoFormatter.h	/^struct annoFormatter$/;"	s
annoFormatterFree	lib/annoFormatter.c	/^void annoFormatterFree(struct annoFormatter **pSelf)$/;"	f
annoFormatterGetOptions	lib/annoFormatter.c	/^struct annoFormatterOption *annoFormatterGetOptions(struct annoFormatter *self)$/;"	f
annoFormatterOption	inc/annoFormatter.h	/^struct annoFormatterOption$/;"	s
annoFormatterOptionCloneList	lib/annoFormatter.c	/^static struct annoFormatterOption *annoFormatterOptionCloneList(struct annoFormatterOption *list)$/;"	f	file:
annoFormatterOptionFreeList	lib/annoFormatter.c	/^static void annoFormatterOptionFreeList(struct annoFormatterOption **pList)$/;"	f	file:
annoFormatterSetOptions	lib/annoFormatter.c	/^void annoFormatterSetOptions(struct annoFormatter *self, struct annoFormatterOption *newOptions)$/;"	f
annoGpVarAsObj	hg/lib/annoGratorGpVar.c	/^struct asObject *annoGpVarAsObj()$/;"	f
annoGpVarDataLineAutoSqlString	hg/lib/annoGratorGpVar.c	/^static char *annoGpVarDataLineAutoSqlString =$/;"	v	file:
annoGrateWigDbNew	hg/lib/annoGrateWig.c	/^struct annoGrator *annoGrateWigDbNew(char *db, char *table, int maxOutput)$/;"	f
annoGrator	inc/annoGrator.h	/^struct annoGrator$/;"	s
annoGratorClose	lib/annoGrator.c	/^void annoGratorClose(struct annoStreamer **pSelf)$/;"	f
annoGratorGpVarIntegrate	hg/lib/annoGratorGpVar.c	/^struct annoRow *annoGratorGpVarIntegrate(struct annoGrator *self, $/;"	f
annoGratorGpVarNew	hg/lib/annoGratorGpVar.c	/^struct annoGrator *annoGratorGpVarNew(struct annoStreamer *mySource)$/;"	f
annoGratorIntegrate	lib/annoGrator.c	/^struct annoRow *annoGratorIntegrate(struct annoGrator *self, struct annoRow *primaryRow,$/;"	f
annoGratorNew	lib/annoGrator.c	/^struct annoGrator *annoGratorNew(struct annoStreamer *mySource)$/;"	f
annoGratorQuery	inc/annoGratorQuery.h	/^struct annoGratorQuery$/;"	s
annoGratorQueryExecute	lib/annoGratorQuery.c	/^void annoGratorQueryExecute(struct annoGratorQuery *query)$/;"	f
annoGratorQueryFree	lib/annoGratorQuery.c	/^void annoGratorQueryFree(struct annoGratorQuery **pQuery)$/;"	f
annoGratorQueryNew	lib/annoGratorQuery.c	/^struct annoGratorQuery *annoGratorQueryNew(char *assemblyName, struct hash *chromSizes,$/;"	f
annoGratorQuerySetRegion	lib/annoGratorQuery.c	/^void annoGratorQuerySetRegion(struct annoGratorQuery *query, char *chrom, uint rStart, uint rEnd)$/;"	f
annoGratorSetQuery	lib/annoGrator.c	/^void annoGratorSetQuery(struct annoStreamer *vSelf, struct annoGratorQuery *query)$/;"	f
annoGratorSetRegion	lib/annoGrator.c	/^void annoGratorSetRegion(struct annoStreamer *vSelf, char *chrom, uint rStart, uint rEnd)$/;"	f
annoRow	inc/annoRow.h	/^struct annoRow$/;"	s
annoRowClone	lib/annoRow.c	/^struct annoRow *annoRowClone(struct annoRow *rowIn, struct annoStreamer *source)$/;"	f
annoRowFree	lib/annoRow.c	/^void annoRowFree(struct annoRow **pRow, struct annoStreamer *source)$/;"	f
annoRowFreeList	lib/annoRow.c	/^void annoRowFreeList(struct annoRow **pList, struct annoStreamer *source)$/;"	f
annoRowFromStringArray	lib/annoRow.c	/^struct annoRow *annoRowFromStringArray(char *chrom, uint start, uint end, boolean rightJoinFail,$/;"	f
annoRowType	inc/annoRow.h	/^enum annoRowType { arUnknown, arWords, arWig, arVcf };$/;"	g
annoRowWigAsText	hg/lib/annoStreamWig.c	/^char *annoRowWigAsText = $/;"	v
annoRowWigFree	lib/annoRow.c	/^static void annoRowWigFree(struct annoRow **pRow)$/;"	f	file:
annoRowWigNew	lib/annoRow.c	/^struct annoRow *annoRowWigNew(char *chrom, uint start, uint end, boolean rightJoinFail,$/;"	f
annoRowWordsFree	lib/annoRow.c	/^static void annoRowWordsFree(struct annoRow **pRow, int numCols)$/;"	f	file:
annoStreamDb	hg/lib/annoStreamDb.c	/^struct annoStreamDb$/;"	s	file:
annoStreamDbNew	hg/lib/annoStreamDb.c	/^struct annoStreamer *annoStreamDbNew(char *db, char *table, struct asObject *asObj)$/;"	f
annoStreamVcf	lib/annoStreamVcf.c	/^struct annoStreamVcf$/;"	s	file:
annoStreamVcfNew	lib/annoStreamVcf.c	/^struct annoStreamer *annoStreamVcfNew(char *fileOrUrl, boolean isTabix, int maxRecords)$/;"	f
annoStreamWig	hg/lib/annoStreamWig.c	/^struct annoStreamWig$/;"	s	file:
annoStreamWigDbNew	hg/lib/annoStreamWig.c	/^struct annoStreamer *annoStreamWigDbNew(char *db, char *table, int maxOutput)$/;"	f
annoStreamer	inc/annoStreamer.h	/^struct annoStreamer$/;"	s
annoStreamerFree	lib/annoStreamer.c	/^void annoStreamerFree(struct annoStreamer **pSelf)$/;"	f
annoStreamerGetAutoSqlObject	lib/annoStreamer.c	/^struct asObject *annoStreamerGetAutoSqlObject(struct annoStreamer *self)$/;"	f
annoStreamerGetColumns	lib/annoStreamer.c	/^struct annoColumn *annoStreamerGetColumns(struct annoStreamer *self)$/;"	f
annoStreamerGetFilters	lib/annoStreamer.c	/^struct annoFilter *annoStreamerGetFilters(struct annoStreamer *self)$/;"	f
annoStreamerInit	lib/annoStreamer.c	/^void annoStreamerInit(struct annoStreamer *self, struct asObject *asObj)$/;"	f
annoStreamerSetColumns	lib/annoStreamer.c	/^void annoStreamerSetColumns(struct annoStreamer *self, struct annoColumn *newColumns)$/;"	f
annoStreamerSetFilters	lib/annoStreamer.c	/^void annoStreamerSetFilters(struct annoStreamer *self, struct annoFilter *newFilters)$/;"	f
annoStreamerSetQuery	lib/annoStreamer.c	/^void annoStreamerSetQuery(struct annoStreamer *self, struct annoGratorQuery *query)$/;"	f
annoStreamerSetRegion	lib/annoStreamer.c	/^void annoStreamerSetRegion(struct annoStreamer *self, char *chrom, uint rStart, uint rEnd)$/;"	f
anns	inc/gff3.h	/^    struct gff3AnnRef *anns;   \/* all records in the file. Includes all parts of discontinuous features *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::gff3AnnRef
anotation	hg/inc/splignAlign.h	/^    char *anotation;	\/* anotation of misMatch, indel *\/$/;"	m	struct:splignAlign
answer_for_kg	lib/blastOut.c	/^int answer_for_kg;$/;"	v
anyIupac	lib/iupac.c	/^boolean anyIupac(char *s)$/;"	f
anyStartWith	hg/lib/hgFind.c	/^static boolean anyStartWith(char *prefix, char *words[], int wordCount)$/;"	f	file:
anyTwrDone	lib/trix.c	/^static boolean anyTwrDone(struct trixWordResult *twrList)$/;"	f	file:
anyWild	lib/wildcmp.c	/^boolean anyWild(const char *string)$/;"	f
anythingConnectsTo	hg/lib/ggGraph.c	/^static boolean anythingConnectsTo(struct geneGraph *gg, int vertIx)$/;"	f	file:
aorfTarget	hg/inc/rnaHybridization.h	/^    char *aorfTarget;	\/* AORF gene name for target or empty *\/$/;"	m	struct:rnaHybridization
apacheAccessLog	inc/apacheLog.h	/^struct apacheAccessLog$/;"	s
apacheAccessLogCmpTick	lib/apacheLog.c	/^int apacheAccessLogCmpTick(const void *va, const void *vb)$/;"	f
apacheAccessLogFree	lib/apacheLog.c	/^void apacheAccessLogFree(struct apacheAccessLog **pLl)$/;"	f
apacheAccessLogParse	lib/apacheLog.c	/^struct apacheAccessLog *apacheAccessLogParse(char *line, $/;"	f
apacheAccessLogTimeToTick	lib/apacheLog.c	/^time_t apacheAccessLogTimeToTick(char *timeStamp)$/;"	f
apiOut	hg/lib/api.c	/^void apiOut(char *text, char *jsonp)$/;"	f
apiWarnAbortHandler	hg/lib/api.c	/^void apiWarnAbortHandler(char *format, va_list args)$/;"	f
appendCgiVar	lib/htmlPage.c	/^static void appendCgiVar(struct dyString *dy, char *name, char *value)$/;"	f	file:
appendMatchHow	hg/lib/genePix.c	/^static void appendMatchHow(struct dyString *dy, char *pattern,$/;"	f	file:
appendMatchHow	hg/lib/visiGene.c	/^static void appendMatchHow(struct dyString *dy, char *pattern,$/;"	f	file:
appendMimeTerminus	lib/htmlPage.c	/^static void appendMimeTerminus(struct dyString *dy, char *boundary)$/;"	f	file:
appendMimeVar	lib/htmlPage.c	/^static void appendMimeVar(struct dyString *dy, char *name, char *value, char *varType, char *boundary)$/;"	f	file:
arCOGs	hg/inc/arCOGs.h	/^struct arCOGs$/;"	s
arCOGsCommaIn	hg/lib/arCOGs.c	/^struct arCOGs *arCOGsCommaIn(char **pS, struct arCOGs *ret)$/;"	f
arCOGsCommaOut	hg/inc/arCOGs.h	61;"	d
arCOGsFree	hg/lib/arCOGs.c	/^void arCOGsFree(struct arCOGs **pEl)$/;"	f
arCOGsFreeList	hg/lib/arCOGs.c	/^void arCOGsFreeList(struct arCOGs **pList)$/;"	f
arCOGsLoad	hg/lib/arCOGs.c	/^struct arCOGs *arCOGsLoad(char **row)$/;"	f
arCOGsLoadAll	hg/lib/arCOGs.c	/^struct arCOGs *arCOGsLoadAll(char *fileName) $/;"	f
arCOGsLoadAllByChar	hg/lib/arCOGs.c	/^struct arCOGs *arCOGsLoadAllByChar(char *fileName, char chopper) $/;"	f
arCOGsLoadAllByTab	hg/inc/arCOGs.h	39;"	d
arCOGsOutput	hg/lib/arCOGs.c	/^void arCOGsOutput(struct arCOGs *el, FILE *f, char sep, char lastSep) $/;"	f
arCOGsStaticLoad	hg/lib/arCOGs.c	/^void arCOGsStaticLoad(char **row, struct arCOGs *ret)$/;"	f
arCOGsTabOut	hg/inc/arCOGs.h	58;"	d
arUnknown	inc/annoRow.h	/^enum annoRowType { arUnknown, arWords, arWig, arVcf };$/;"	e	enum:annoRowType
arVcf	inc/annoRow.h	/^enum annoRowType { arUnknown, arWords, arWig, arVcf };$/;"	e	enum:annoRowType
arWig	inc/annoRow.h	/^enum annoRowType { arUnknown, arWords, arWig, arVcf };$/;"	e	enum:annoRowType
arWords	inc/annoRow.h	/^enum annoRowType { arUnknown, arWords, arWig, arVcf };$/;"	e	enum:annoRowType
archiveDbDbLoad	hg/lib/hdb.c	/^struct dbDb *archiveDbDbLoad(char **row)$/;"	f
arcogdesc	hg/inc/arcogdesc.h	/^struct arcogdesc$/;"	s
arcogdescCommaIn	hg/lib/arcogdesc.c	/^struct arcogdesc *arcogdescCommaIn(char **pS, struct arcogdesc *ret)$/;"	f
arcogdescCommaOut	hg/inc/arcogdesc.h	57;"	d
arcogdescFree	hg/lib/arcogdesc.c	/^void arcogdescFree(struct arcogdesc **pEl)$/;"	f
arcogdescFreeList	hg/lib/arcogdesc.c	/^void arcogdescFreeList(struct arcogdesc **pList)$/;"	f
arcogdescLoad	hg/lib/arcogdesc.c	/^struct arcogdesc *arcogdescLoad(char **row)$/;"	f
arcogdescLoadAll	hg/lib/arcogdesc.c	/^struct arcogdesc *arcogdescLoadAll(char *fileName) $/;"	f
arcogdescLoadAllByChar	hg/lib/arcogdesc.c	/^struct arcogdesc *arcogdescLoadAllByChar(char *fileName, char chopper) $/;"	f
arcogdescLoadAllByTab	hg/inc/arcogdesc.h	35;"	d
arcogdescOutput	hg/lib/arcogdesc.c	/^void arcogdescOutput(struct arcogdesc *el, FILE *f, char sep, char lastSep) $/;"	f
arcogdescStaticLoad	hg/lib/arcogdesc.c	/^void arcogdescStaticLoad(char **row, struct arcogdesc *ret)$/;"	f
arcogdescTabOut	hg/inc/arcogdesc.h	54;"	d
arcsForOverlaps	hg/lib/ggGraph.c	/^static boolean arcsForOverlaps(struct geneGraph *gg)$/;"	f	file:
arcsForSoftEndedExon	hg/lib/ggGraph.c	/^static boolean arcsForSoftEndedExon(struct geneGraph *gg, int startIx, int softEndIx)$/;"	f	file:
arcsForSoftStartedExon	hg/lib/ggGraph.c	/^static boolean arcsForSoftStartedExon(struct geneGraph *gg, int softStartIx, int endIx)$/;"	f	file:
arow	hg/inc/stanMad.h	/^    int arow;	\/* unknown *\/$/;"	m	struct:stanMad
array	hg/inc/wiggle.h	/^    struct wiggleArray *array;	\/*	one big in-memory array of data	*\/$/;"	m	struct:wiggleDataStream	typeref:struct:wiggleDataStream::wiggleArray
array	inc/bbiFile.h	/^    struct bbiSummaryOnDisk *array;$/;"	m	struct:bbiSumOutStream	typeref:struct:bbiSumOutStream::bbiSummaryOnDisk
array	inc/itsa.h	/^    bits32 *array;	\/* Alphabetized offsets into allDna.  The suffix array. *\/$/;"	m	struct:itsa
array	inc/sufa.h	/^    bits32 *array;	\/* Alphabetized offsets into allDna. *\/$/;"	m	struct:sufa
array	inc/sufx.h	/^    bits32 *array;	\/* Alphabetized offsets into allDna. *\/$/;"	m	struct:sufx
arrayDataCmp	hg/lib/wigDataStream.c	/^static int arrayDataCmp(const void *va, const void *vb)$/;"	f	file:
arraySize	inc/itsa.h	/^    bits64 arraySize;	 \/* Total number of bases actually indexed (non-N, unmasked). *\/$/;"	m	struct:itsaFileHeader
arraySize	inc/sufa.h	/^    bits64 arraySize;   \/* Total number of bases actually indexed (non-N, unmasked). *\/$/;"	m	struct:sufaFileHeader
arraySize	inc/sufx.h	/^    bits64 arraySize;	 \/* Total number of bases actually indexed (non-N, unmasked). *\/$/;"	m	struct:sufxFileHeader
asColNames	hg/lib/hui.c	/^struct slName *asColNames(struct asObject *as)$/;"	f
asColumn	inc/asParse.h	/^struct asColumn$/;"	s
asColumnFind	hg/lib/hui.c	/^struct asColumn *asColumnFind(struct asObject *asObj, char *name)$/;"	f
asColumnFind	lib/asParse.c	/^struct asColumn *asColumnFind(struct asObject *asObj, char *name)$/;"	f
asColumnFindIx	hg/lib/annoStreamDb.c	/^static int asColumnFindIx(struct asColumn *list, char *string)$/;"	f	file:
asColumnFree	lib/asParse.c	/^void asColumnFree(struct asColumn **pAs)$/;"	f
asColumnFreeList	lib/asParse.c	/^void asColumnFreeList(struct asColumn **pList)$/;"	f
asColumnToSqlType	lib/asParse.c	/^struct dyString *asColumnToSqlType(struct asColumn *col)$/;"	f
asCompareObjAgainstStandardBed	lib/basicBed.c	/^boolean asCompareObjAgainstStandardBed(struct asObject *asYours, int numColumnsToCheck, boolean abortOnDifference)$/;"	f
asCompareObjs	lib/asParse.c	/^boolean asCompareObjs(char *name1, struct asObject *as1, char *name2, struct asObject *as2, int numColumnsToCheck,$/;"	f
asFieldsGet	hg/lib/hui.c	/^static struct extraField *asFieldsGet(char *db, struct trackDb *tdb)$/;"	f	file:
asForTdb	hg/lib/hui.c	/^struct asObject *asForTdb(struct sqlConnection *conn, struct trackDb *tdb)$/;"	f
asForTdbOrDie	hg/lib/hui.c	/^static struct asObject *asForTdbOrDie(struct sqlConnection *conn, struct trackDb *tdb)$/;"	f	file:
asHasFields	hg/lib/annoStreamDb.c	/^static boolean asHasFields(struct annoStreamDb *self, char *chromField, char *startField,$/;"	f	file:
asLinkEmbeddedObjects	lib/asParse.c	/^static void asLinkEmbeddedObjects(struct asObject *obj, struct asObject *objList)$/;"	f	file:
asObj	inc/annoStreamer.h	/^    struct asObject *asObj;$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::asObject
asObject	inc/asParse.h	/^struct asObject$/;"	s
asObjectFree	lib/asParse.c	/^void asObjectFree(struct asObject **pAs)$/;"	f
asObjectFreeList	lib/asParse.c	/^void asObjectFreeList(struct asObject **pList)$/;"	f
asOffset	inc/bbiFile.h	/^    bits64 asOffset;		\/* Offset to embedded null-terminated AutoSQL file. *\/$/;"	m	struct:bbiFile
asParseColArraySpec	lib/asParse.c	/^static void asParseColArraySpec(struct tokenizer *tkz, struct asObject *obj,$/;"	f	file:
asParseColDef	lib/asParse.c	/^static void asParseColDef(struct tokenizer *tkz, struct asObject *obj)$/;"	f	file:
asParseColSymSpec	lib/asParse.c	/^static void asParseColSymSpec(struct tokenizer *tkz, struct asObject *obj,$/;"	f	file:
asParseFile	lib/asParse.c	/^struct asObject *asParseFile(char *fileName)$/;"	f
asParseLineFile	lib/asParse.c	/^static struct asObject *asParseLineFile(struct lineFile *lf)$/;"	f	file:
asParseTableDef	lib/asParse.c	/^static struct asObject *asParseTableDef(struct tokenizer *tkz)$/;"	f	file:
asParseText	lib/asParse.c	/^struct asObject *asParseText(char *text)$/;"	f
asParseTokens	lib/asParse.c	/^static struct asObject *asParseTokens(struct tokenizer *tkz)$/;"	f	file:
asTypeInfo	inc/asParse.h	/^struct asTypeInfo$/;"	s
asTypeNameFromSqlType	lib/asParse.c	/^char *asTypeNameFromSqlType(char *sqlType)$/;"	f
asTypes	inc/asParse.h	/^enum asTypes$/;"	g
asTypes	lib/asParse.c	/^struct asTypeInfo asTypes[] = {$/;"	v	typeref:struct:asTypeInfo
asTypesIntSize	lib/asParse.c	/^int asTypesIntSize(enum asTypes type)$/;"	f
asTypesIntSizeDescription	lib/asParse.c	/^char *asTypesIntSizeDescription(enum asTypes type)$/;"	f
asTypesIsFloating	lib/asParse.c	/^boolean asTypesIsFloating(enum asTypes type)$/;"	f
asTypesIsInt	lib/asParse.c	/^boolean asTypesIsInt(enum asTypes type)$/;"	f
asTypesIsUnsigned	lib/asParse.c	/^boolean asTypesIsUnsigned(enum asTypes type)$/;"	f
asWords	lib/annoStreamVcf.c	/^    char *asWords[VCF_NUM_COLS];	\/\/ Current row of VCF with genotypes squashed for autoSql$/;"	m	struct:annoStreamVcf	file:
asc_dist	lib/gemfont.h	/^WORD	asc_dist;	\/* Ascender to baseline?? *\/$/;"	m	struct:font_hdr
ascertainingMethod	hg/inc/dbRIP.h	/^    char *ascertainingMethod;	\/* Ascertaining Method *\/$/;"	m	struct:dbRIP
ascii	hg/inc/wiggle.h	/^    struct wigAsciiData *ascii;	\/*	list of wiggle data values *\/$/;"	m	struct:wiggleDataStream	typeref:struct:wiggleDataStream::wigAsciiData
asciiArtDumpDa	hg/lib/ggDump.c	/^void asciiArtDumpDa(struct ggAliInfo *da, int start, int end)$/;"	f
asciiDataCmp	hg/lib/wigDataStream.c	/^static int asciiDataCmp(const void *va, const void *vb)$/;"	f	file:
asciiDatum	hg/inc/wiggle.h	/^struct asciiDatum$/;"	s
asciiEntityDecode	lib/htmlPage.c	/^static void asciiEntityDecode(char *in, char *out, int inLength)$/;"	f	file:
asciiLine	inc/peakCluster.h	/^    char *asciiLine;		\/* Ascii representation of line. *\/$/;"	m	struct:peakItem
asciiOut	hg/inc/wiggle.h	/^    int (*asciiOut)(struct wiggleDataStream *wds,char *db, char *fileName, boolean sort,$/;"	m	struct:wiggleDataStream
asciiOut	hg/lib/wigDataStream.c	/^static int asciiOut(struct wiggleDataStream *wds, char *db, char *fileName, boolean sort,$/;"	f	file:
asciiToDataArray	hg/inc/wiggle.h	/^    float *(*asciiToDataArray)(struct wiggleDataStream *wds,$/;"	m	struct:wiggleDataStream
asciiToDataArray	hg/lib/wigDataStream.c	/^static float *asciiToDataArray(struct wiggleDataStream *wds,$/;"	f	file:
asdClose	hg/lib/annoStreamDb.c	/^static void asdClose(struct annoStreamer **pVSelf)$/;"	f	file:
asdDoQuery	hg/lib/annoStreamDb.c	/^static void asdDoQuery(struct annoStreamDb *self)$/;"	f	file:
asdInitBed3Fields	hg/lib/annoStreamDb.c	/^static boolean asdInitBed3Fields(struct annoStreamDb *self)$/;"	f	file:
asdNextRow	hg/lib/annoStreamDb.c	/^static struct annoRow *asdNextRow(struct annoStreamer *vSelf)$/;"	f	file:
asdSetRegion	hg/lib/annoStreamDb.c	/^static void asdSetRegion(struct annoStreamer *vSelf, char *chrom, uint regionStart, uint regionEnd)$/;"	f	file:
aspect	hg/inc/fbTables.h	/^    char *aspect;	\/* P (process), F (function) or C (cellular component) *\/$/;"	m	struct:fbGo
aspect	hg/inc/goa.h	/^    char *aspect;	\/*  P (process), F (function) or C (cellular component) *\/$/;"	m	struct:goa
aspect	hg/inc/goaPart.h	/^    char *aspect;	\/*  P (process), F (function) or C (cellular component) *\/$/;"	m	struct:goaPart
assayLSID	hg/inc/alleleFreqs.h	/^    char *assayLSID;	\/* assayLSID *\/$/;"	m	struct:alleleFreqs
assayLSID	hg/inc/genotype.h	/^    char *assayLSID;	\/*  assayLSID	# urn:LSID:illumina.hapmap.org:Assay:19660:1 *\/$/;"	m	struct:genotype
assayLSID	hg/inc/genotypeFreqs.h	/^    char *assayLSID;	\/* assayLSID *\/$/;"	m	struct:genotypeFreqs
assembly	hg/inc/alleleFreqs.h	/^    char *assembly;	\/*  build			ncbi_b34 *\/$/;"	m	struct:alleleFreqs
assembly	hg/inc/dbSnpRs.h	/^    char *assembly;	\/* the sequence in the assembly *\/$/;"	m	struct:dbSnpRs
assembly	hg/inc/genotype.h	/^    char *assembly;	\/*  genome_build	# ncbi_b34 *\/$/;"	m	struct:genotype
assembly	hg/inc/genotypeFreqs.h	/^    char *assembly;	\/* build		ncbi_34 *\/$/;"	m	struct:genotypeFreqs
assemblyGeneSuggestTrack	hg/lib/suggest.c	/^char *assemblyGeneSuggestTrack(char *database)$/;"	f
assemblyName	inc/annoGratorQuery.h	/^    char *assemblyName;			\/\/ Usually a UCSC db name like "hg19".$/;"	m	struct:annoGratorQuery
assemblySupportsGeneSuggest	hg/lib/suggest.c	/^boolean assemblySupportsGeneSuggest(char *database)$/;"	f
assertLocalUrl	lib/udc.c	/^static char *assertLocalUrl(char *url)$/;"	f	file:
assignBin	lib/rnautil.c	/^int assignBin(double val, double minVal, double maxVal, int binCount)$/;"	f
assignFrame	hg/lib/genePred.c	/^static void assignFrame(boolean isGtf, struct gffGroup *group, struct genePred *gp)$/;"	f	file:
assignFrameForCdsExon	hg/lib/genePred.c	/^static struct gffLine *assignFrameForCdsExon(int start, int end, int *framePtr,$/;"	f	file:
assignToArray	hg/lib/altGraphX.c	/^static void assignToArray(int *array, int arraySize, int count, int val)$/;"	f	file:
assignVal	hg/lib/rangeTreeFile.c	/^static void *assignVal(void *existing, void *new)$/;"	f	file:
assignedBy	hg/inc/goa.h	/^    char *assignedBy;	\/* Database that made the annotation. Like 'SPTR' *\/$/;"	m	struct:goa
asvClose	lib/annoStreamVcf.c	/^static void asvClose(struct annoStreamer **pVSelf)$/;"	f	file:
asvNextRow	lib/annoStreamVcf.c	/^static struct annoRow *asvNextRow(struct annoStreamer *vSelf)$/;"	f	file:
asvSetRegion	lib/annoStreamVcf.c	/^static void asvSetRegion(struct annoStreamer *vSelf, char *chrom, uint regionStart, uint regionEnd)$/;"	f	file:
aswClose	hg/lib/annoStreamWig.c	/^static void aswClose(struct annoStreamer **pVSelf)$/;"	f	file:
aswNextRow	hg/lib/annoStreamWig.c	/^static struct annoRow *aswNextRow(struct annoStreamer *vSelf)$/;"	f	file:
aswSetQuery	hg/lib/annoStreamWig.c	/^static void aswSetQuery(struct annoStreamer *vSelf, struct annoGratorQuery *query)$/;"	f	file:
aswSetRegion	hg/lib/annoStreamWig.c	/^static void aswSetRegion(struct annoStreamer *vSelf, char *chrom, uint regionStart, uint regionEnd)$/;"	f	file:
atEndTag	inc/xp.h	/^    void (*atEndTag)(void *userData, char *name, char *text);   \/* Got end. *\/$/;"	m	struct:xp
atStartTag	inc/xp.h	/^    void (*atStartTag)(void *userData, char *name, char **atts);  \/* Got start and attributes. *\/$/;"	m	struct:xp
atacIntrons	hg/inc/txInfo.h	/^    int atacIntrons;	\/* Count of number of at\/ac introns *\/$/;"	m	struct:txInfo
atccName	hg/inc/sgdClone.h	/^    char *atccName;	\/* ATCC clone name (optional) *\/$/;"	m	struct:sgdClone
atom	hg/inc/atomDb.h	/^struct atom$/;"	s
atom	lib/intExp.c	/^static double atom()$/;"	f	file:
atomCommaIn	hg/lib/atomDb.c	/^struct atom *atomCommaIn(char **pS, struct atom *ret)$/;"	f
atomCommaOut	hg/inc/atomDb.h	63;"	d
atomFree	hg/lib/atomDb.c	/^void atomFree(struct atom **pEl)$/;"	f
atomFreeList	hg/lib/atomDb.c	/^void atomFreeList(struct atom **pList)$/;"	f
atomLoad	hg/lib/atomDb.c	/^struct atom *atomLoad(char **row)$/;"	f
atomLoadAll	hg/lib/atomDb.c	/^struct atom *atomLoadAll(char *fileName) $/;"	f
atomLoadAllByChar	hg/lib/atomDb.c	/^struct atom *atomLoadAllByChar(char *fileName, char chopper) $/;"	f
atomLoadAllByTab	hg/inc/atomDb.h	41;"	d
atomOutput	hg/lib/atomDb.c	/^void atomOutput(struct atom *el, FILE *f, char sep, char lastSep) $/;"	f
atomStaticLoad	hg/lib/atomDb.c	/^void atomStaticLoad(char **row, struct atom *ret)$/;"	f
atomTabOut	hg/inc/atomDb.h	60;"	d
attBuf	inc/xp.h	/^    char *attBuf[128];    	        \/* Attribute buffer as regular string. *\/$/;"	m	struct:xp
attDyBuf	inc/xp.h	/^    struct dyString *attDyBuf[128];	\/* Attribute buffer as dynamic string. *\/$/;"	m	struct:xp	typeref:struct:xp::dyString
attatchQaInfo	hg/lib/qaSeq.c	/^static void attatchQaInfo(struct hash *hash, char *name, UBYTE *q, int size)$/;"	f	file:
attrAcc	hg/inc/landmark.h	/^    char *attrAcc;	\/* accession used by link *\/$/;"	m	struct:landmarkAttrLink
attrAcc	hg/inc/oreganno.h	/^    char *attrAcc;	\/* accession used by link *\/$/;"	m	struct:oregannoLink
attrAcc	hg/inc/oregannoOther.h	/^    char *attrAcc;	\/* accession used by link *\/$/;"	m	struct:oregannoOtherLink
attrCount	hg/inc/bed8Attrs.h	/^    int attrCount;	\/* Number of attributes *\/$/;"	m	struct:bed8Attrs
attrId	hg/inc/landmark.h	/^    unsigned attrId;	\/* key into the landmarkAttr table *\/$/;"	m	struct:landmarkAttrLink
attrTags	hg/inc/bed8Attrs.h	/^    char **attrTags;	\/* Attribute tags\/keys *\/$/;"	m	struct:bed8Attrs
attrType	hg/inc/gv.h	/^    char *attrType;	\/* attribute type *\/$/;"	m	struct:gvAttr
attrType	hg/inc/gv.h	/^    char *attrType;	\/* attribute type *\/$/;"	m	struct:gvAttrLong
attrType	hg/inc/gv.h	/^    char *attrType;	\/* attribute type *\/$/;"	m	struct:gvLink
attrType	hg/inc/omicia.h	/^    char *attrType;	\/* attribute type *\/$/;"	m	struct:omiciaLink
attrType	hg/inc/omicia.h	/^    char *attrType;	\/* attribute type, label *\/$/;"	m	struct:omiciaAttr
attrType	hg/inc/protVar.h	/^    char *attrType;	\/* attribute type *\/$/;"	m	struct:protVarAttr
attrType	hg/inc/protVar.h	/^    char *attrType;	\/* attribute type *\/$/;"	m	struct:protVarLink
attrVal	hg/inc/gv.h	/^    char *attrVal;	\/* value for this attribute *\/$/;"	m	struct:gvAttr
attrVal	hg/inc/gv.h	/^    char *attrVal;	\/* value for this attribute *\/$/;"	m	struct:gvAttrLong
attrVal	hg/inc/landmark.h	/^    char *attrVal;	\/* value of this landmark attribute *\/$/;"	m	struct:landmarkAttr
attrVal	hg/inc/omicia.h	/^    char *attrVal;	\/* value for this attribute *\/$/;"	m	struct:omiciaAttr
attrVal	hg/inc/oreganno.h	/^    char *attrVal;	\/* value of this oreganno attribute *\/$/;"	m	struct:oregannoAttr
attrVal	hg/inc/oregannoOther.h	/^    char *attrVal;	\/* value of this oreganno attribute *\/$/;"	m	struct:oregannoOtherAttr
attrVal	hg/inc/protVar.h	/^    char *attrVal;	\/* value for this attribute *\/$/;"	m	struct:protVarAttr
attrVals	hg/inc/bed8Attrs.h	/^    char **attrVals;	\/* Attribute values *\/$/;"	m	struct:bed8Attrs
attribute	hg/inc/landmark.h	/^    char *attribute;	\/* name of attribute being listed *\/$/;"	m	struct:landmarkAttr
attribute	hg/inc/oreganno.h	/^    char *attribute;	\/* name of attribute being listed *\/$/;"	m	struct:oregannoAttr
attribute	hg/inc/oreganno.h	/^    char *attribute;	\/* name of attribute being listed *\/$/;"	m	struct:oregannoLink
attribute	hg/inc/oregannoOther.h	/^    char *attribute;	\/* name of attribute being listed *\/$/;"	m	struct:oregannoOtherAttr
attribute	hg/inc/oregannoOther.h	/^    char *attribute;	\/* name of attribute being listed *\/$/;"	m	struct:oregannoOtherLink
attributeEncode	lib/htmshell.c	/^char *attributeEncode(char *str)$/;"	f
attributeOntologies	inc/gff3.h	/^    struct slName *attributeOntologies;  \/* attribute ontology URIs *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::slName
attributes	inc/dtdParse.h	/^    struct dtdAttribute *attributes; \/* Attributes. *\/$/;"	m	struct:dtdElement	typeref:struct:dtdElement::dtdAttribute
attributes	inc/htmlPage.h	/^    struct htmlAttribute *attributes;  \/* Attribute list. *\/$/;"	m	struct:htmlTag	typeref:struct:htmlTag::htmlAttribute
attrs	inc/gff3.h	/^    struct gff3Attr *attrs;  \/* attributes, both user-define and spec-defined,$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3Attr
author	hg/inc/gwasCatalog.h	/^    char *author;	\/* First author of publication *\/$/;"	m	struct:gwasCatalog
autoExpand	inc/hash.h	/^    boolean autoExpand;         \/* Automatically expand hash *\/$/;"	m	struct:hash
autoIncrement	hg/inc/mysqlTableStatus.h	/^    char *autoIncrement;	\/* Next autoincrement value (or NULL) *\/$/;"	m	struct:mysqlTableStatus
autoIncrement	hg/inc/tableStatus.h	/^    char *autoIncrement;	\/* Current value of autoincrement - rows+1 or NULL *\/$/;"	m	struct:tableStatus
autoScale	lib/histogram.c	/^static unsigned autoScale(float *values, size_t N, float *binSize,$/;"	f	file:
autoSqlDef	hg/inc/tableDescriptions.h	/^    char *autoSqlDef;	\/* Contents of autoSql (.as) table definition file *\/$/;"	m	struct:tableDescriptions
avHet	hg/inc/dbSnpRs.h	/^    float avHet;	\/* the average heterozygosity from all observations *\/$/;"	m	struct:dbSnpRs
avHet	hg/inc/snp.h	/^    float avHet;	\/* The average heterozygosity from all observations *\/$/;"	m	struct:snp
avHet	hg/inc/snp125.h	/^    float avHet;	\/* The average heterozygosity from all observations *\/$/;"	m	struct:snp125
avHet	hg/inc/snp125.h	/^    float avHet;	\/* The average heterozygosity from all observations *\/$/;"	m	struct:snp125Extended
avHet	hg/inc/snp132Ext.h	/^    float avHet;	\/* Average heterozygosity from all observations.  Note: may be computed on small number of samples. *\/$/;"	m	struct:snp132Ext
avHetSE	hg/inc/affy120KDetails.h	/^    float avHetSE;	\/* The Standard Error for the average heterozygosity (not used) *\/$/;"	m	struct:affy120KDetails
avHetSE	hg/inc/affyGenoDetails.h	/^    float avHetSE;	\/* The Standard Error for the average heterozygosity (not used) *\/$/;"	m	struct:affyGenoDetails
avHetSE	hg/inc/dbSnpRs.h	/^    float avHetSE;	\/* the Standard Error for the average heterozygosity *\/$/;"	m	struct:dbSnpRs
avHetSE	hg/inc/snp.h	/^    float avHetSE;	\/* The Standard Error for the average heterozygosity *\/$/;"	m	struct:snp
avHetSE	hg/inc/snp125.h	/^    float avHetSE;	\/* The Standard Error for the average heterozygosity *\/$/;"	m	struct:snp125
avHetSE	hg/inc/snp125.h	/^    float avHetSE;	\/* The Standard Error for the average heterozygosity *\/$/;"	m	struct:snp125Extended
avHetSE	hg/inc/snp132Ext.h	/^    float avHetSE;	\/* Standard Error for the average heterozygosity *\/$/;"	m	struct:snp132Ext
aveAlleleFreq	hg/inc/pgSiftPred.h	/^    char *aveAlleleFreq;	\/* Average allele frequencies *\/$/;"	m	struct:pgSiftPred
aveRowLength	hg/inc/tableStatus.h	/^    unsigned aveRowLength;	\/* Average length of row in bytes *\/$/;"	m	struct:tableStatus
averageRowLength	hg/inc/mysqlTableStatus.h	/^    int averageRowLength;	\/* Average row length *\/$/;"	m	struct:mysqlTableStatus
aves	hg/inc/sage.h	/^    float *aves;	\/* The average count of all tags for each experiment. *\/$/;"	m	struct:sage
avgDprime	hg/inc/ld2.h	/^    char avgDprime;	\/* Encoded average D' magnitude for dense display *\/$/;"	m	struct:ld2
avgLod	hg/inc/ld2.h	/^    char avgLod;	\/* Encoded average LOD value for dense display *\/$/;"	m	struct:ld2
avgRsquared	hg/inc/ld2.h	/^    char avgRsquared;	\/* Encoded average r^2 value for dense display *\/$/;"	m	struct:ld2
avoidFuzzyFindKludge	inc/supStitch.h	/^    boolean avoidFuzzyFindKludge;	\/* Temporary flag to avoid call to fuzzyFind. *\/$/;"	m	struct:ssBundle
axt	inc/axt.h	/^struct axt$/;"	s
axt	lib/blastOut.c	/^    struct axt *axt;$/;"	m	struct:axtRef	typeref:struct:axtRef::axt	file:
axtAddBlocksToBoxInList	lib/axt.c	/^void axtAddBlocksToBoxInList(struct cBlock **pList, struct axt *axt)$/;"	f
axtAffine	lib/axtAffine.c	/^struct axt *axtAffine(bioSeq *query, bioSeq *target, struct axtScoreScheme *ss)$/;"	f
axtAffine2Level	lib/axtAffine.c	/^struct axt *axtAffine2Level(bioSeq *query, bioSeq *target, struct axtScoreScheme *ss)$/;"	f
axtAffineSmallEnough	lib/axtAffine.c	/^boolean axtAffineSmallEnough(double querySize, double targetSize)$/;"	f
axtBlastOut	lib/blastOut.c	/^void axtBlastOut(struct axtBundle *abList, $/;"	f
axtBundle	inc/axt.h	/^struct axtBundle$/;"	s
axtBundleFree	lib/axt.c	/^void axtBundleFree(struct axtBundle **pObj)$/;"	f
axtBundleFreeList	lib/axt.c	/^void axtBundleFreeList(struct axtBundle **pList)$/;"	f
axtCheck	lib/axt.c	/^boolean axtCheck(struct axt *axt, struct lineFile *lf)$/;"	f
axtCmpQuery	lib/axt.c	/^int axtCmpQuery(const void *va, const void *vb)$/;"	f
axtCmpScore	lib/axt.c	/^int axtCmpScore(const void *va, const void *vb)$/;"	f
axtCmpTarget	lib/axt.c	/^int axtCmpTarget(const void *va, const void *vb)$/;"	f
axtCmpTargetScoreDesc	lib/axt.c	/^int axtCmpTargetScoreDesc(const void *va, const void *vb)$/;"	f
axtCoverage	lib/axt.c	/^double axtCoverage(struct axt *axt, int qSize, int tSize)$/;"	f
axtData	jkOwnLib/gfOut.c	/^struct axtData$/;"	s	file:
axtFillGap	hg/lib/axtLib.c	/^void axtFillGap(struct axt **aList, char *nibDir, char direction)$/;"	f
axtFree	lib/axt.c	/^void axtFree(struct axt **pEl)$/;"	f
axtFreeList	lib/axt.c	/^void axtFreeList(struct axt **pList)$/;"	f
axtFromBlocks	lib/chainToAxt.c	/^static struct axt *axtFromBlocks($/;"	f	file:
axtGetSubsetOnT	lib/axt.c	/^boolean axtGetSubsetOnT(struct axt *axt, struct axt *axtOut,$/;"	f
axtIdRatio	jkOwnLib/gfOut.c	/^static double axtIdRatio(struct axt *axt)$/;"	f	file:
axtIdWithGaps	lib/axt.c	/^double axtIdWithGaps(struct axt *axt)$/;"	f
axtInfo	hg/inc/axtInfo.h	/^struct axtInfo$/;"	s
axtInfoCommaIn	hg/lib/axtInfo.c	/^struct axtInfo *axtInfoCommaIn(char **pS, struct axtInfo *ret)$/;"	f
axtInfoCommaOut	hg/inc/axtInfo.h	57;"	d
axtInfoFree	hg/lib/axtInfo.c	/^void axtInfoFree(struct axtInfo **pEl)$/;"	f
axtInfoFreeList	hg/lib/axtInfo.c	/^void axtInfoFreeList(struct axtInfo **pList)$/;"	f
axtInfoLoad	hg/lib/axtInfo.c	/^struct axtInfo *axtInfoLoad(char **row)$/;"	f
axtInfoLoadAll	hg/lib/axtInfo.c	/^struct axtInfo *axtInfoLoadAll(char *fileName) $/;"	f
axtInfoLoadWhere	hg/lib/axtInfo.c	/^struct axtInfo *axtInfoLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
axtInfoOutput	hg/lib/axtInfo.c	/^void axtInfoOutput(struct axtInfo *el, FILE *f, char sep, char lastSep) $/;"	f
axtInfoStaticLoad	hg/lib/axtInfo.c	/^void axtInfoStaticLoad(char **row, struct axtInfo *ret)$/;"	f
axtInfoTabOut	hg/inc/axtInfo.h	54;"	d
axtList	inc/axt.h	/^    struct axt *axtList;	\/* List of alignments. *\/$/;"	m	struct:axtBundle	typeref:struct:axtBundle::axt
axtList	lib/blastOut.c	/^    struct axtRef *axtList; \/* List of axts, sorted by score. *\/$/;"	m	struct:targetHits	typeref:struct:targetHits::axtRef	file:
axtListReverse	hg/lib/axtLib.c	/^void axtListReverse(struct axt **axtList, char *queryDb)$/;"	f
axtLoadAsMafInRegion	hg/lib/hgMaf.c	/^struct mafAli *axtLoadAsMafInRegion(struct sqlConnection *conn, char *table,$/;"	f
axtOutPretty	lib/axt.c	/^void axtOutPretty(struct axt *axt, int lineSize, FILE *f)$/;"	f
axtPrintTraditional	lib/axt.c	/^void axtPrintTraditional(struct axt *axt, int maxLine, struct axtScoreScheme *ss, FILE *f)$/;"	f
axtPrintTraditionalExtra	lib/axt.c	/^void axtPrintTraditionalExtra(struct axt *axt, int maxLine,$/;"	f
axtQueryOut	jkOwnLib/gfOut.c	/^static void axtQueryOut(struct gfOutput *out, FILE *f)$/;"	f	file:
axtRead	lib/axt.c	/^struct axt *axtRead(struct lineFile *lf)$/;"	f
axtReadWithPos	lib/axt.c	/^struct axt *axtReadWithPos(struct lineFile *lf, off_t *retOffset)$/;"	f
axtRef	lib/blastOut.c	/^struct axtRef$/;"	s	file:
axtRefCmpScore	lib/blastOut.c	/^static int axtRefCmpScore(const void *va, const void *vb)$/;"	f	file:
axtScore	hg/inc/pseudoGeneLink.h	/^    int axtScore;	\/* blastz score, gene mrna aligned to pseudogene *\/$/;"	m	struct:pseudoGeneLink
axtScore	hg/inc/retroMrnaInfo.h	/^    int axtScore;	\/* blastz score, parent mrna aligned to pseudogene col14 *\/$/;"	m	struct:retroMrnaInfo
axtScore	hg/inc/ucscRetroInfo.h	/^    int axtScore;	\/* blastz score, parent mrna aligned to pseudogene col14 *\/$/;"	m	struct:ucscRetroInfo
axtScore	lib/axt.c	/^int axtScore(struct axt *axt, struct axtScoreScheme *ss)$/;"	f
axtScoreDnaDefault	lib/axt.c	/^int axtScoreDnaDefault(struct axt *axt)$/;"	f
axtScoreFilterRepeats	lib/axt.c	/^int axtScoreFilterRepeats(struct axt *axt, struct axtScoreScheme *ss)$/;"	f
axtScoreProteinDefault	lib/axt.c	/^int axtScoreProteinDefault(struct axt *axt)$/;"	f
axtScoreScheme	inc/axt.h	/^struct axtScoreScheme$/;"	s
axtScoreSchemeDefault	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeDefault()$/;"	f
axtScoreSchemeDnaWrite	lib/axt.c	/^void axtScoreSchemeDnaWrite(struct axtScoreScheme *ss, FILE *f, char *name)$/;"	f
axtScoreSchemeFree	lib/axt.c	/^void axtScoreSchemeFree(struct axtScoreScheme **pObj)$/;"	f
axtScoreSchemeFromBlastzMatrix	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeFromBlastzMatrix(char *text, int gapOpen, int gapExtend)$/;"	f
axtScoreSchemeFromProteinText	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeFromProteinText(char *text, char *fileName)$/;"	f
axtScoreSchemeProteinDefault	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeProteinDefault()$/;"	f
axtScoreSchemeProteinRead	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeProteinRead(char *fileName)$/;"	f
axtScoreSchemeRead	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeRead(char *fileName)$/;"	f
axtScoreSchemeReadLf	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeReadLf(struct lineFile *lf )$/;"	f
axtScoreSchemeRnaDefault	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeRnaDefault()$/;"	f
axtScoreSchemeRnaFill	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeRnaFill()$/;"	f
axtScoreSchemeSimpleDna	lib/axt.c	/^struct axtScoreScheme *axtScoreSchemeSimpleDna(int match, int misMatch, int gapOpen, int gapExtend)$/;"	f
axtScoreSym	lib/axt.c	/^int axtScoreSym(struct axtScoreScheme *ss, int symCount, char *qSym, char *tSym)$/;"	f
axtScoreSymFilterRepeats	lib/axt.c	/^int axtScoreSymFilterRepeats(struct axtScoreScheme *ss, int symCount, char *qSym, char *tSym)$/;"	f
axtScoreUngapped	lib/axt.c	/^int axtScoreUngapped(struct axtScoreScheme *ss, char *q, char *t, int size)$/;"	f
axtSubsetOnT	lib/axt.c	/^void axtSubsetOnT(struct axt *axt, int newStart, int newEnd, $/;"	f
axtSwap	lib/axt.c	/^void axtSwap(struct axt *axt, int tSize, int qSize)$/;"	f
axtTransPosToQ	lib/axt.c	/^int axtTransPosToQ(struct axt *axt, int tPos)$/;"	f
axtWrite	lib/axt.c	/^void axtWrite(struct axt *axt, FILE *f)$/;"	f
b	hg/inc/joiner.h	/^    struct joinerDtf *b;	\/* Field in another table *\/$/;"	m	struct:joinerPair	typeref:struct:joinerPair::joinerDtf
b	hg/inc/kgColor.h	/^    unsigned char b;	\/* Blue component 0-255 *\/$/;"	m	struct:kgColor
b	hg/lib/ensFace.c	/^   char *b;	\/* The other string *\/$/;"	m	struct:stringPair	file:
b	inc/diGraph.h	/^    struct dgNode *b;   \/* Node on outgoing side. *\/$/;"	m	struct:dgEdge	typeref:struct:dgEdge::dgNode
b	inc/memgfx.h	/^    unsigned char r, g, b;$/;"	m	struct:rgbColor
b	inc/rql.h	/^    boolean b;$/;"	m	union:rqlVal
b1	lib/gifdecomp.c	/^static UBYTE b1;                           \/* Current byte *\/$/;"	v	file:
bCmpSeqSource	jkOwnLib/genoFind.c	/^static int bCmpSeqSource(const void *vTarget, const void *vRange)$/;"	f	file:
bDeltaForParallelLine	lib/pscmGfx.c	/^double bDeltaForParallelLine(double d, double m)$/;"	f
bLastPos	lib/gapCalc.c	/^    int bLastPos;	\/* Maximum position we have data on in b. *\/$/;"	m	struct:gapCalc	file:
bLastPosVal	lib/gapCalc.c	/^    double bLastPosVal;	\/* Value at max pos. *\/$/;"	m	struct:gapCalc	file:
bLastSlope	lib/gapCalc.c	/^    double bLastSlope;	\/* What to add for each base after last. *\/$/;"	m	struct:gapCalc	file:
bLong	lib/gapCalc.c	/^    double *bLong; \/* Values to interpolate between for larger gaps in both. *\/$/;"	m	struct:gapCalc	file:
bPosCount	lib/gapCalc.c	/^    int bPosCount;	\/* Number of long positions in b. *\/$/;"	m	struct:gapCalc	file:
bSmall	lib/gapCalc.c	/^    int *bSmall;   \/* Table for small gaps in either. *\/$/;"	m	struct:gapCalc	file:
bac	hg/inc/cnpSharpSample.h	/^    char *bac;	\/* BAC Name *\/$/;"	m	struct:cnpSharpSample
bac	inc/hgap.h	/^    struct hgBac *bac;        \/* Bac this is in. *\/$/;"	m	struct:hgContig	typeref:struct:hgContig::hgBac
bacCloneAlias	hg/inc/bacCloneAlias.h	/^struct bacCloneAlias$/;"	s
bacCloneAliasCommaIn	hg/lib/bacCloneAlias.c	/^struct bacCloneAlias *bacCloneAliasCommaIn(char **pS, struct bacCloneAlias *ret)$/;"	f
bacCloneAliasCommaOut	hg/inc/bacCloneAlias.h	56;"	d
bacCloneAliasFree	hg/lib/bacCloneAlias.c	/^void bacCloneAliasFree(struct bacCloneAlias **pEl)$/;"	f
bacCloneAliasFreeList	hg/lib/bacCloneAlias.c	/^void bacCloneAliasFreeList(struct bacCloneAlias **pList)$/;"	f
bacCloneAliasLoad	hg/lib/bacCloneAlias.c	/^struct bacCloneAlias *bacCloneAliasLoad(char **row)$/;"	f
bacCloneAliasLoadAll	hg/lib/bacCloneAlias.c	/^struct bacCloneAlias *bacCloneAliasLoadAll(char *fileName) $/;"	f
bacCloneAliasLoadAllByChar	hg/lib/bacCloneAlias.c	/^struct bacCloneAlias *bacCloneAliasLoadAllByChar(char *fileName, char chopper) $/;"	f
bacCloneAliasLoadAllByTab	hg/inc/bacCloneAlias.h	34;"	d
bacCloneAliasOutput	hg/lib/bacCloneAlias.c	/^void bacCloneAliasOutput(struct bacCloneAlias *el, FILE *f, char sep, char lastSep) $/;"	f
bacCloneAliasStaticLoad	hg/lib/bacCloneAlias.c	/^void bacCloneAliasStaticLoad(char **row, struct bacCloneAlias *ret)$/;"	f
bacCloneAliasTabOut	hg/inc/bacCloneAlias.h	53;"	d
bacCloneXRef	hg/inc/bacCloneXRef.h	/^struct bacCloneXRef$/;"	s
bacCloneXRefCommaIn	hg/lib/bacCloneXRef.c	/^struct bacCloneXRef *bacCloneXRefCommaIn(char **pS, struct bacCloneXRef *ret)$/;"	f
bacCloneXRefCommaOut	hg/inc/bacCloneXRef.h	63;"	d
bacCloneXRefFree	hg/lib/bacCloneXRef.c	/^void bacCloneXRefFree(struct bacCloneXRef **pEl)$/;"	f
bacCloneXRefFreeList	hg/lib/bacCloneXRef.c	/^void bacCloneXRefFreeList(struct bacCloneXRef **pList)$/;"	f
bacCloneXRefLoad	hg/lib/bacCloneXRef.c	/^struct bacCloneXRef *bacCloneXRefLoad(char **row)$/;"	f
bacCloneXRefLoadAll	hg/lib/bacCloneXRef.c	/^struct bacCloneXRef *bacCloneXRefLoadAll(char *fileName) $/;"	f
bacCloneXRefLoadAllByChar	hg/lib/bacCloneXRef.c	/^struct bacCloneXRef *bacCloneXRefLoadAllByChar(char *fileName, char chopper) $/;"	f
bacCloneXRefLoadAllByTab	hg/inc/bacCloneXRef.h	41;"	d
bacCloneXRefOutput	hg/lib/bacCloneXRef.c	/^void bacCloneXRefOutput(struct bacCloneXRef *el, FILE *f, char sep, char lastSep) $/;"	f
bacCloneXRefStaticLoad	hg/lib/bacCloneXRef.c	/^void bacCloneXRefStaticLoad(char **row, struct bacCloneXRef *ret)$/;"	f
bacCloneXRefTabOut	hg/inc/bacCloneXRef.h	60;"	d
bacEndAlias	hg/inc/bacEndAlias.h	/^struct bacEndAlias$/;"	s
bacEndAliasCommaIn	hg/lib/bacEndAlias.c	/^struct bacEndAlias *bacEndAliasCommaIn(char **pS, struct bacEndAlias *ret)$/;"	f
bacEndAliasCommaOut	hg/inc/bacEndAlias.h	57;"	d
bacEndAliasFree	hg/lib/bacEndAlias.c	/^void bacEndAliasFree(struct bacEndAlias **pEl)$/;"	f
bacEndAliasFreeList	hg/lib/bacEndAlias.c	/^void bacEndAliasFreeList(struct bacEndAlias **pList)$/;"	f
bacEndAliasLoad	hg/lib/bacEndAlias.c	/^struct bacEndAlias *bacEndAliasLoad(char **row)$/;"	f
bacEndAliasLoadAll	hg/lib/bacEndAlias.c	/^struct bacEndAlias *bacEndAliasLoadAll(char *fileName) $/;"	f
bacEndAliasLoadAllByChar	hg/lib/bacEndAlias.c	/^struct bacEndAlias *bacEndAliasLoadAllByChar(char *fileName, char chopper) $/;"	f
bacEndAliasLoadAllByTab	hg/inc/bacEndAlias.h	35;"	d
bacEndAliasOutput	hg/lib/bacEndAlias.c	/^void bacEndAliasOutput(struct bacEndAlias *el, FILE *f, char sep, char lastSep) $/;"	f
bacEndAliasStaticLoad	hg/lib/bacEndAlias.c	/^void bacEndAliasStaticLoad(char **row, struct bacEndAlias *ret)$/;"	f
bacEndAliasTabOut	hg/inc/bacEndAlias.h	54;"	d
bacIx	inc/patSpace.h	/^    int bacIx;                 \/* Index of .fa file where hit occurs. *\/$/;"	m	struct:patClump
bacIx	jkOwnLib/patSpace.c	/^    bits16 bacIx;          \/* Which bac. *\/$/;"	m	struct:blockPos	file:
backd	lib/axtAffine.c	/^char backd;                         $/;"	m	struct:cell2L	file:
background	inc/gfWebLib.h	/^    char *background;	\/* Web page background if any. *\/$/;"	m	struct:gfWebConfig
backi	lib/axtAffine.c	/^char backi;                          $/;"	m	struct:cell2L	file:
backm	lib/axtAffine.c	/^char backm;   \/* back trace array *\/$/;"	m	struct:cell2L	file:
bactigPos	hg/inc/bactigPos.h	/^struct bactigPos$/;"	s
bactigPosCommaIn	hg/lib/bactigPos.c	/^struct bactigPos *bactigPosCommaIn(char **pS, struct bactigPos *ret)$/;"	f
bactigPosCommaOut	hg/inc/bactigPos.h	50;"	d
bactigPosFree	hg/lib/bactigPos.c	/^void bactigPosFree(struct bactigPos **pEl)$/;"	f
bactigPosFreeList	hg/lib/bactigPos.c	/^void bactigPosFreeList(struct bactigPos **pList)$/;"	f
bactigPosLoad	hg/lib/bactigPos.c	/^struct bactigPos *bactigPosLoad(char **row)$/;"	f
bactigPosLoadAll	hg/lib/bactigPos.c	/^struct bactigPos *bactigPosLoadAll(char *fileName) $/;"	f
bactigPosOutput	hg/lib/bactigPos.c	/^void bactigPosOutput(struct bactigPos *el, FILE *f, char sep, char lastSep) $/;"	f
bactigPosStaticLoad	hg/lib/bactigPos.c	/^void bactigPosStaticLoad(char **row, struct bactigPos *ret)$/;"	f
bactigPosTabOut	hg/inc/bactigPos.h	47;"	d
badFormat	lib/apacheLog.c	/^static void badFormat(struct apacheAccessLog **pLl, char *line, char *fileName, $/;"	f	file:
badGenomeStanza	hg/lib/trackHub.c	/^static void badGenomeStanza(struct lineFile *lf)$/;"	f	file:
badProteinMatrixLine	lib/axt.c	/^static void badProteinMatrixLine(int lineIx, char *fileName)$/;"	f	file:
badTimeStamp	lib/apacheLog.c	/^static void badTimeStamp(struct apacheAccessLog **pLl, char *line, $/;"	f	file:
bad_code_count	lib/gifdecomp.c	/^int bad_code_count;$/;"	v
baf	inc/seqOut.h	/^struct baf$/;"	s
bafFlushLine	lib/seqOut.c	/^void bafFlushLine(struct baf *baf)$/;"	f
bafFlushLineNoHr	lib/seqOut.c	/^void bafFlushLineNoHr(struct baf *baf)$/;"	f
bafInit	lib/seqOut.c	/^void bafInit(struct baf *baf, DNA *needle, int nNumOff,  boolean nCountDown,$/;"	f
bafOut	lib/seqOut.c	/^void bafOut(struct baf *baf, char n, char h)$/;"	f
bafSetAli	lib/seqOut.c	/^void bafSetAli(struct baf *baf, struct ffAli *ali)$/;"	f
bafSetPos	lib/seqOut.c	/^void bafSetPos(struct baf *baf, int nStart, int hStart)$/;"	f
bafStartLine	lib/seqOut.c	/^void bafStartLine(struct baf *baf)$/;"	f
bafWriteLine	lib/seqOut.c	/^void bafWriteLine(struct baf *baf)$/;"	f
bam1_t	inc/bamFile.h	/^typedef struct { } bam1_t;$/;"	t	typeref:struct:__anon5
bamAddOneSamAlignment	hg/lib/hgBam.c	/^int bamAddOneSamAlignment(const bam1_t *bam, void *data)$/;"	f
bamAsObj	hg/inc/samAlignment.h	75;"	d
bamCfgUi	hg/lib/hui.c	/^void bamCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed)$/;"	f
bamChromInfo	inc/bamFile.h	/^struct bamChromInfo$/;"	s
bamChromInfoFree	lib/bamFile.c	/^static void bamChromInfoFree(struct bamChromInfo **pInfo)$/;"	f	file:
bamChromInfoFreeList	lib/bamFile.c	/^void bamChromInfoFreeList(struct bamChromInfo **pList)$/;"	f
bamChromList	lib/bamFile.c	/^struct bamChromInfo *bamChromList(samfile_t *fh)$/;"	f
bamClone	lib/bamFile.c	/^bam1_t *bamClone(const bam1_t *bam)$/;"	f
bamClose	lib/bamFile.c	/^void bamClose(samfile_t **pSamFile)$/;"	f
bamFactory	hg/lib/customFactory.c	/^static struct customFactory bamFactory =$/;"	v	typeref:struct:customFactory	file:
bamFetch	lib/bamFile.c	/^void bamFetch(char *fileOrUrl, char *position, bam_fetch_f callbackFunc, void *callbackData,$/;"	f
bamFetchAlreadyOpen	lib/bamFile.c	/^void bamFetchAlreadyOpen(samfile_t *samfile, bam_index_t *idx, char *bamFileName, $/;"	f
bamFetchSamAlignment	hg/lib/hgBam.c	/^struct samAlignment *bamFetchSamAlignment(char *fileOrUrl, char *chrom, int start, int end,$/;"	f
bamFileExists	lib/bamFile.c	/^boolean bamFileExists(char *bamFileName)$/;"	f
bamFileExists	lib/bamFile.c	/^boolean bamFileExists(char *fileOrUrl)$/;"	f
bamFileNameFromTable	hg/lib/hgBam.c	/^char *bamFileNameFromTable(struct sqlConnection *conn, char *table, char *bamSeqName)$/;"	f
bamGetCigar	lib/bamFile.c	/^char *bamGetCigar(const bam1_t *bam)$/;"	f
bamGetQueryQuals	lib/bamFile.c	/^UBYTE *bamGetQueryQuals(const bam1_t *bam, boolean useStrand)$/;"	f
bamGetQuerySequence	lib/bamFile.c	/^char *bamGetQuerySequence(const bam1_t *bam, boolean useStrand)$/;"	f
bamGetSoftClipping	lib/bamFile.c	/^void bamGetSoftClipping(const bam1_t *bam, int *retLow, int *retHigh, int *retClippedQLen)$/;"	f
bamGetTagString	lib/bamFile.c	/^char *bamGetTagString(const bam1_t *bam, char *tag, char *buf, size_t bufSize)$/;"	f
bamGetTargetLength	lib/bamFile.c	/^int bamGetTargetLength(const bam1_t *bam)$/;"	f
bamIsRc	lib/bamFile.c	/^boolean bamIsRc(const bam1_t *bam)$/;"	f
bamLoader	hg/lib/customFactory.c	/^static struct customTrack *bamLoader(struct customFactory *fac, struct hash *chromHash,$/;"	f	file:
bamOpen	lib/bamFile.c	/^samfile_t *bamOpen(char *fileOrUrl, char **retBamFileName)$/;"	f
bamReadNextSamAlignments	hg/lib/hgBam.c	/^struct samAlignment *bamReadNextSamAlignments(samfile_t *fh, int count, struct lm *lm)$/;"	f
bamRecognizer	hg/lib/customFactory.c	/^static boolean bamRecognizer(struct customFactory *fac,	struct customPp *cpp, char *type,$/;"	f	file:
bamShowCigarEnglish	lib/bamFile.c	/^void bamShowCigarEnglish(const bam1_t *bam)$/;"	f
bamShowFlagsEnglish	lib/bamFile.c	/^void bamShowFlagsEnglish(const bam1_t *bam)$/;"	f
bamShowTags	lib/bamFile.c	/^void bamShowTags(const bam1_t *bam)$/;"	f
bamToFfAli	hg/lib/hgBam.c	/^struct ffAli *bamToFfAli(const bam1_t *bam, struct dnaSeq *target, int targetOffset,$/;"	f
bamToSamHelper	hg/lib/hgBam.c	/^struct bamToSamHelper$/;"	s	file:
bamUnpackAux	lib/bamFile.c	/^void bamUnpackAux(const bam1_t *bam, struct dyString *dy)$/;"	f
bamUnpackCigar	lib/bamFile.c	/^void bamUnpackCigar(const bam1_t *bam, struct dyString *dyCigar)$/;"	f
bamUnpackCigarElement	inc/bamFile.h	/^INLINE int bamUnpackCigarElement(unsigned int packed, char *retOp)$/;"	f
bamUnpackQuerySequence	lib/bamFile.c	/^void bamUnpackQuerySequence(const bam1_t *bam, boolean useStrand, char *qSeq)$/;"	f
bam_fetch_f	inc/bamFile.h	/^typedef int (*bam_fetch_f)(const bam1_t *b, void *data);$/;"	t
bam_index_t	inc/bamFile.h	/^typedef struct { } bam_index_t;$/;"	t	typeref:struct:__anon6
bandEnds	hg/inc/fishClones.h	/^    char **bandEnds;	\/* End FISH band *\/$/;"	m	struct:fishClones
bandExt	jkOwnLib/bandExt.c	/^boolean bandExt(boolean global, struct axtScoreScheme *ss, int maxInsert,$/;"	f
bandExtAfter	jkOwnLib/ffSeedExtend.c	/^static void bandExtAfter(struct axtScoreScheme *ss, struct ffAli *ff,$/;"	f	file:
bandExtBefore	jkOwnLib/ffSeedExtend.c	/^static void bandExtBefore(struct axtScoreScheme *ss, struct ffAli *ff,$/;"	f	file:
bandExtFf	jkOwnLib/bandExt.c	/^struct ffAli *bandExtFf($/;"	f
bandList	hg/lib/hgFind.c	/^static struct cytoBand *bandList = NULL;$/;"	v	typeref:struct:cytoBand	file:
bandStarts	hg/inc/fishClones.h	/^    char **bandStarts;	\/* Start FISH band *\/$/;"	m	struct:fishClones
bandedExtend	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *bandedExtend(struct dnaSeq *qSeq, struct dnaSeq *tSeq, struct ffAli *ffList)$/;"	f	file:
bands	hg/inc/geneBands.h	/^    char **bands;	\/* List of bands this maps to *\/$/;"	m	struct:geneBands
barbHeight	hg/inc/trackLayout.h	/^    int barbHeight;		\/* Height of arrows on introns. *\/$/;"	m	struct:trackLayout
barbSpacing	hg/inc/trackLayout.h	/^    int barbSpacing;		\/* Space between arrows on introns. *\/$/;"	m	struct:trackLayout
base64Decode	lib/base64.c	/^char *base64Decode(char *input, size_t *returnSize)$/;"	f
base64Encode	lib/base64.c	/^char *base64Encode(char *input, size_t inplen)$/;"	f
base64Validate	lib/base64.c	/^boolean base64Validate(char *input)$/;"	f
baseA	hg/inc/affy10KDetails.h	/^    char baseA[3];	\/* The first allele (A) *\/$/;"	m	struct:affy10KDetails
baseA	hg/inc/affy120KDetails.h	/^    char baseA[3];	\/* The first allele (A) *\/$/;"	m	struct:affy120KDetails
baseA	hg/inc/affyGenoDetails.h	/^    char baseA[3];	\/* The first allele (A) *\/$/;"	m	struct:affyGenoDetails
baseB	hg/inc/affy10KDetails.h	/^    char baseB[3];	\/* The second allele (B) *\/$/;"	m	struct:affy10KDetails
baseB	hg/inc/affy120KDetails.h	/^    char baseB[3];	\/* The second allele (B) *\/$/;"	m	struct:affy120KDetails
baseB	hg/inc/affyGenoDetails.h	/^    char baseB[3];	\/* The second allele (B) *\/$/;"	m	struct:affyGenoDetails
baseChangeType	hg/inc/gv.h	/^    char *baseChangeType;	\/* enum('insertion', 'deletion', 'substitution','duplication','complex','unknown') *\/$/;"	m	struct:gv
baseChangeType	hg/inc/protVar.h	/^    char *baseChangeType;	\/* enum('insertion', 'deletion', 'substitution','duplication','complex','unknown') *\/$/;"	m	struct:protVar
baseColorDrawAllOptionLabels	hg/lib/hui.c	/^static char *baseColorDrawAllOptionLabels[] =$/;"	v	file:
baseColorDrawAllOptionValues	hg/lib/hui.c	/^static char *baseColorDrawAllOptionValues[] =$/;"	v	file:
baseColorDrawCds	hg/inc/hui.h	/^    baseColorDrawCds = -1,        \/* not a selection option, a fall back when$/;"	e	enum:baseColorDrawOpt
baseColorDrawDiffBases	hg/inc/hui.h	/^    baseColorDrawDiffBases = 5,$/;"	e	enum:baseColorDrawOpt
baseColorDrawDiffCodons	hg/inc/hui.h	/^    baseColorDrawDiffCodons = 3,$/;"	e	enum:baseColorDrawOpt
baseColorDrawGenomicCodons	hg/inc/hui.h	/^    baseColorDrawGenomicCodons = 1,$/;"	e	enum:baseColorDrawOpt
baseColorDrawGenomicOptionLabels	hg/lib/hui.c	/^static char *baseColorDrawGenomicOptionLabels[] =$/;"	v	file:
baseColorDrawGenomicOptionValues	hg/lib/hui.c	/^static char *baseColorDrawGenomicOptionValues[] =$/;"	v	file:
baseColorDrawItemBases	hg/inc/hui.h	/^    baseColorDrawItemBases = 4,$/;"	e	enum:baseColorDrawOpt
baseColorDrawItemCodons	hg/inc/hui.h	/^    baseColorDrawItemCodons = 2,$/;"	e	enum:baseColorDrawOpt
baseColorDrawItemOptionLabels	hg/lib/hui.c	/^static char *baseColorDrawItemOptionLabels[] =$/;"	v	file:
baseColorDrawItemOptionValues	hg/lib/hui.c	/^static char *baseColorDrawItemOptionValues[] =$/;"	v	file:
baseColorDrawOff	hg/inc/hui.h	/^    baseColorDrawOff = 0,$/;"	e	enum:baseColorDrawOpt
baseColorDrawOpt	hg/inc/hui.h	/^enum baseColorDrawOpt$/;"	g
baseColorDrawOptDropDown	hg/lib/hui.c	/^void baseColorDrawOptDropDown(struct cart *cart, struct trackDb *tdb)$/;"	f
baseColorDrawOptEnabled	hg/lib/hui.c	/^enum baseColorDrawOpt baseColorDrawOptEnabled(struct cart *cart,$/;"	f
baseColorDrawOptStringToEnum	hg/lib/hui.c	/^enum baseColorDrawOpt baseColorDrawOptStringToEnum(char *string)$/;"	f
baseColorDropLists	hg/lib/hui.c	/^static void baseColorDropLists(struct cart *cart, struct trackDb *tdb, char *name)$/;"	f	file:
baseColorGotCds	hg/lib/hui.c	/^static boolean baseColorGotCds(struct trackDb *tdb)$/;"	f	file:
baseColorGotSequence	hg/lib/hui.c	/^static boolean baseColorGotSequence(struct trackDb *tdb)$/;"	f	file:
baseCount	hg/inc/ggMrnaAli.h	/^    unsigned baseCount;	\/* number of bases in query  *\/$/;"	m	struct:ggMrnaAli
baseCount	inc/cda.h	/^    int baseCount;$/;"	m	struct:cdaAli
baseCount	inc/nt4.h	/^    int baseCount;              \/* Number of bases. *\/$/;"	m	struct:nt4Seq
baseMaskCacheTrack	hg/lib/baseMaskCommon.c	/^char *baseMaskCacheTrack(char *cacheDir, char *chromDb, char *db, char *table, boolean quiet, boolean logUpdateTimes)$/;"	f
basedOn	hg/inc/pgPolyphenPred.h	/^    char *basedOn;	\/* prediction basis *\/$/;"	m	struct:pgPolyphenPred
bases	hg/inc/mrnaMisMatch.h	/^    char *bases;	\/* genomic bases for each misMatch *\/$/;"	m	struct:mrnaMisMatch
bases	inc/ace.h	/^    int bases;$/;"	m	struct:aceCO
bases	inc/ace.h	/^    int bases;$/;"	m	struct:aceRD
bases	inc/nt4.h	/^    bits32 *bases;              \/* Packed bases. *\/$/;"	m	struct:nt4Seq
basesIndexed	inc/splix.h	/^    bits64 basesIndexed;\/* Total number of bases actually indexed (non-N, unmasked). *\/$/;"	m	struct:splixFileHeader
basesPerPixel	hg/inc/genoLay.h	/^    double basesPerPixel;		\/* Bases per pixel *\/$/;"	m	struct:genoLay
basesToBits64	lib/dnautil.c	/^bits64 basesToBits64(char *dna, int size)$/;"	f
batch	hg/inc/cnpSharpCutoff.h	/^    unsigned batch;	\/* Batch number *\/$/;"	m	struct:cnpSharpCutoff
batch	hg/inc/cnpSharpSample.h	/^    unsigned batch;	\/* Batch number *\/$/;"	m	struct:cnpSharpSample
bbiAddRangeToSummary	lib/bbiWrite.c	/^void bbiAddRangeToSummary(bits32 chromId, bits32 chromSize, bits32 start, bits32 end, $/;"	f
bbiAddToSummary	lib/bbiWrite.c	/^void bbiAddToSummary(bits32 chromId, bits32 chromSize, bits32 start, bits32 end, $/;"	f
bbiAttachUnzoomedCir	lib/bbiRead.c	/^void bbiAttachUnzoomedCir(struct bbiFile *bbi)$/;"	f
bbiBestZoom	lib/bbiRead.c	/^struct bbiZoomLevel *bbiBestZoom(struct bbiZoomLevel *levelList, int desiredReduction)$/;"	f
bbiBoundsArray	inc/bbiFile.h	/^struct bbiBoundsArray$/;"	s
bbiBoundsArrayFetchKey	lib/bbiWrite.c	/^struct cirTreeRange bbiBoundsArrayFetchKey(const void *va, void *context)$/;"	f
bbiBoundsArrayFetchOffset	lib/bbiWrite.c	/^bits64 bbiBoundsArrayFetchOffset(const void *va, void *context)$/;"	f
bbiChrom	lib/lineFileOnBigBed.c	/^    struct bbiChromInfo *bbiChrom, *bbiChromList;         \/\/ BigBed chrom info$/;"	m	struct:lfBigBedData	typeref:struct:lfBigBedData::bbiChromInfo	file:
bbiChromId	lib/bbiRead.c	/^static int bbiChromId(struct bbiFile *bbi, char *chrom)$/;"	f	file:
bbiChromIdSize	inc/bbiFile.h	/^struct bbiChromIdSize$/;"	s
bbiChromInfo	inc/bbiFile.h	/^struct bbiChromInfo$/;"	s
bbiChromInfoCmp	lib/bbiWrite.c	/^static int bbiChromInfoCmp(const void *va, const void *vb)$/;"	f	file:
bbiChromInfoFree	lib/bbiRead.c	/^void bbiChromInfoFree(struct bbiChromInfo **pInfo)$/;"	f
bbiChromInfoFreeList	lib/bbiRead.c	/^void bbiChromInfoFreeList(struct bbiChromInfo **pList)$/;"	f
bbiChromInfoKey	lib/bbiWrite.c	/^void bbiChromInfoKey(const void *va, char *keyBuf)$/;"	f
bbiChromInfoVal	lib/bbiWrite.c	/^void *bbiChromInfoVal(const void *va)$/;"	f
bbiChromList	lib/bbiRead.c	/^struct bbiChromInfo *bbiChromList(struct bbiFile *bbi)$/;"	f
bbiChromList	lib/lineFileOnBigBed.c	/^    struct bbiChromInfo *bbiChrom, *bbiChromList;         \/\/ BigBed chrom info$/;"	m	struct:lfBigBedData	typeref:struct:lfBigBedData::	file:
bbiChromSize	lib/bbiRead.c	/^bits32 bbiChromSize(struct bbiFile *bbi, char *chrom)$/;"	f
bbiChromSizesFromFile	lib/bbiWrite.c	/^struct hash *bbiChromSizesFromFile(char *fileName)$/;"	f
bbiChromUsage	inc/bbiFile.h	/^struct bbiChromUsage$/;"	s
bbiChromUsageFree	lib/bbiWrite.c	/^void bbiChromUsageFree(struct bbiChromUsage **pUsage)$/;"	f
bbiChromUsageFreeList	lib/bbiWrite.c	/^void bbiChromUsageFreeList(struct bbiChromUsage **pList)$/;"	f
bbiChromUsageFromBedFile	lib/bbiWrite.c	/^struct bbiChromUsage *bbiChromUsageFromBedFile(struct lineFile *lf, $/;"	f
bbiCountSectionsNeeded	lib/bbiWrite.c	/^int bbiCountSectionsNeeded(struct bbiChromUsage *usageList, int itemsPerSlot)$/;"	f
bbiCurrentVersion	inc/bbiFile.h	59;"	d
bbiFile	hg/inc/customTrack.h	/^    struct bbiFile *bbiFile;	\/* Handle for bigWig\/bigBed file. *\/$/;"	m	struct:customTrack	typeref:struct:customTrack::bbiFile
bbiFile	inc/bbiFile.h	/^struct bbiFile $/;"	s
bbiFileCheckSigs	lib/bbiRead.c	/^boolean bbiFileCheckSigs(char *fileName, bits32 sig, char *typeName)$/;"	f
bbiFileClose	lib/bbiRead.c	/^void bbiFileClose(struct bbiFile **pBwf)$/;"	f
bbiFileOpen	lib/bbiRead.c	/^struct bbiFile *bbiFileOpen(char *fileName, bits32 sig, char *typeName)$/;"	f
bbiHandle	lib/lineFileOnBigBed.c	/^    struct bbiFile *bbiHandle;                            \/\/ BigBed handle$/;"	m	struct:lfBigBedData	typeref:struct:lfBigBedData::bbiFile	file:
bbiInterval	inc/bbiFile.h	/^struct bbiInterval$/;"	s
bbiInterval	lib/lineFileOnBigBed.c	/^    struct bigBedInterval *bbiInterval, *bbiIntervalList; \/\/ BigBed intervals$/;"	m	struct:lfBigBedData	typeref:struct:lfBigBedData::bigBedInterval	file:
bbiIntervalList	lib/lineFileOnBigBed.c	/^    struct bigBedInterval *bbiInterval, *bbiIntervalList; \/\/ BigBed intervals$/;"	m	struct:lfBigBedData	typeref:struct:lfBigBedData::	file:
bbiIntervalSlice	lib/bbiRead.c	/^static bits32 bbiIntervalSlice(struct bbiFile *bbi, bits32 baseStart, bits32 baseEnd, $/;"	f	file:
bbiLm	lib/lineFileOnBigBed.c	/^    struct lm *bbiLm;                                     \/\/ BigBed local memory$/;"	m	struct:lfBigBedData	typeref:struct:lfBigBedData::lm	file:
bbiMaxZoomLevels	inc/bbiFile.h	299;"	d
bbiNameFromSettingOrTable	hg/lib/hdb.c	/^char *bbiNameFromSettingOrTable(struct trackDb *tdb, struct sqlConnection *conn, char *table)$/;"	f
bbiOutputOneSummaryFurtherReduce	lib/bbiWrite.c	/^void bbiOutputOneSummaryFurtherReduce(struct bbiSummary *sum, $/;"	f
bbiOverlappingBlocks	lib/bbiRead.c	/^struct fileOffsetSize *bbiOverlappingBlocks(struct bbiFile *bbi, struct cirTreeFile *ctf,$/;"	f
bbiReduceSummaryList	lib/bbiWrite.c	/^struct bbiSummary *bbiReduceSummaryList(struct bbiSummary *inList, $/;"	f
bbiSumCoverage	inc/bbiFile.h	/^    bbiSumCoverage = 3,  \/* Bases in region containing actual data. *\/$/;"	e	enum:bbiSummaryType
bbiSumMax	inc/bbiFile.h	/^    bbiSumMax = 1,	\/* Maximum value *\/$/;"	e	enum:bbiSummaryType
bbiSumMean	inc/bbiFile.h	/^    bbiSumMean = 0,	\/* Average value *\/$/;"	e	enum:bbiSummaryType
bbiSumMin	inc/bbiFile.h	/^    bbiSumMin = 2,	\/* Minimum value *\/$/;"	e	enum:bbiSummaryType
bbiSumOutStream	inc/bbiFile.h	/^struct bbiSumOutStream$/;"	s
bbiSumOutStreamClose	lib/bbiWrite.c	/^void bbiSumOutStreamClose(struct bbiSumOutStream **pStream)$/;"	f
bbiSumOutStreamFlush	lib/bbiWrite.c	/^void bbiSumOutStreamFlush(struct bbiSumOutStream *stream)$/;"	f
bbiSumOutStreamOpen	lib/bbiWrite.c	/^struct bbiSumOutStream *bbiSumOutStreamOpen(int allocCount, FILE *f, boolean doCompress)$/;"	f
bbiSumOutStreamWrite	lib/bbiWrite.c	/^void bbiSumOutStreamWrite(struct bbiSumOutStream *stream, struct bbiSummary *sum)$/;"	f
bbiSumStandardDeviation	inc/bbiFile.h	/^    bbiSumStandardDeviation = 4, \/* Standard deviation in window. *\/$/;"	e	enum:bbiSummaryType
bbiSummariesInRegion	lib/bbiRead.c	/^static struct bbiSummary *bbiSummariesInRegion(struct bbiZoomLevel *zoom, struct bbiFile *bbi, $/;"	f	file:
bbiSummary	inc/bbiFile.h	/^struct bbiSummary$/;"	s
bbiSummaryArray	lib/bbiRead.c	/^boolean bbiSummaryArray(struct bbiFile *bbi, char *chrom, bits32 start, bits32 end,$/;"	f
bbiSummaryArrayExtended	lib/bbiRead.c	/^boolean bbiSummaryArrayExtended(struct bbiFile *bbi, char *chrom, bits32 start, bits32 end,$/;"	f
bbiSummaryArrayFromFull	lib/bbiRead.c	/^static boolean bbiSummaryArrayFromFull(struct bbiFile *bbi, $/;"	f	file:
bbiSummaryArrayFromZoom	lib/bbiRead.c	/^static boolean bbiSummaryArrayFromZoom(struct bbiZoomLevel *zoom, struct bbiFile *bbi, $/;"	f	file:
bbiSummaryElement	inc/bbiFile.h	/^struct bbiSummaryElement$/;"	s
bbiSummaryElementWrite	lib/bbiWrite.c	/^void bbiSummaryElementWrite(FILE *f, struct bbiSummaryElement *sum)$/;"	f
bbiSummaryFetchKey	lib/bbiWrite.c	/^static struct cirTreeRange bbiSummaryFetchKey(const void *va, void *context)$/;"	f	file:
bbiSummaryFetchOffset	lib/bbiWrite.c	/^static bits64 bbiSummaryFetchOffset(const void *va, void *context)$/;"	f	file:
bbiSummaryFreeList	inc/bbiFile.h	194;"	d
bbiSummaryFromOnDisk	lib/bbiRead.c	/^static struct bbiSummary *bbiSummaryFromOnDisk(struct bbiSummaryOnDisk *in)$/;"	f	file:
bbiSummaryOnDisk	inc/bbiFile.h	/^struct bbiSummaryOnDisk$/;"	s
bbiSummaryOnDiskRead	lib/bbiRead.c	/^static void bbiSummaryOnDiskRead(struct bbiFile *bbi, struct bbiSummaryOnDisk *sum)$/;"	f	file:
bbiSummarySimpleReduce	lib/bbiWrite.c	/^struct bbiSummary *bbiSummarySimpleReduce(struct bbiSummary *list, int reduction, struct lm *lm)$/;"	f
bbiSummarySlice	lib/bbiRead.c	/^static bits32 bbiSummarySlice(struct bbiFile *bbi, bits32 baseStart, bits32 baseEnd, $/;"	f	file:
bbiSummaryType	inc/bbiFile.h	/^enum bbiSummaryType$/;"	g
bbiSummaryTypeFromString	lib/bbiRead.c	/^enum bbiSummaryType bbiSummaryTypeFromString(char *string)$/;"	f
bbiSummaryTypeToString	lib/bbiRead.c	/^char *bbiSummaryTypeToString(enum bbiSummaryType type)$/;"	f
bbiTotalSummary	lib/bbiRead.c	/^struct bbiSummaryElement bbiTotalSummary(struct bbiFile *bbi)$/;"	f
bbiTotalSummarySize	lib/bbiWrite.c	/^bits64 bbiTotalSummarySize(struct bbiSummary *list)$/;"	f
bbiUpdateTime	lib/bbiRead.c	/^time_t bbiUpdateTime(struct bbiFile *bbi)$/;"	f
bbiWriteChromInfo	lib/bbiWrite.c	/^void bbiWriteChromInfo(struct bbiChromUsage *usageList, int blockSize, FILE *f)$/;"	f
bbiWriteDummyHeader	lib/bbiWrite.c	/^void bbiWriteDummyHeader(FILE *f)$/;"	f
bbiWriteDummyZooms	lib/bbiWrite.c	/^void bbiWriteDummyZooms(FILE *f)$/;"	f
bbiWriteFloat	lib/bbiWrite.c	/^void bbiWriteFloat(FILE *f, float val)$/;"	f
bbiWriteSummaryAndIndex	lib/bbiWrite.c	/^bits64 bbiWriteSummaryAndIndex(struct bbiSummary *summaryList, $/;"	f
bbiWriteSummaryAndIndexComp	lib/bbiWrite.c	/^static bits64 bbiWriteSummaryAndIndexComp(struct bbiSummary *summaryList, $/;"	f	file:
bbiWriteSummaryAndIndexUnc	lib/bbiWrite.c	/^static bits64 bbiWriteSummaryAndIndexUnc(struct bbiSummary *summaryList, $/;"	f	file:
bbiZoomLevel	inc/bbiFile.h	/^struct bbiZoomLevel$/;"	s
bdgpExprLink	hg/inc/bdgpExprLink.h	/^struct bdgpExprLink$/;"	s
bdgpExprLinkCommaIn	hg/lib/bdgpExprLink.c	/^struct bdgpExprLink *bdgpExprLinkCommaIn(char **pS, struct bdgpExprLink *ret)$/;"	f
bdgpExprLinkCommaOut	hg/inc/bdgpExprLink.h	63;"	d
bdgpExprLinkFree	hg/lib/bdgpExprLink.c	/^void bdgpExprLinkFree(struct bdgpExprLink **pEl)$/;"	f
bdgpExprLinkFreeList	hg/lib/bdgpExprLink.c	/^void bdgpExprLinkFreeList(struct bdgpExprLink **pList)$/;"	f
bdgpExprLinkLoad	hg/lib/bdgpExprLink.c	/^struct bdgpExprLink *bdgpExprLinkLoad(char **row)$/;"	f
bdgpExprLinkLoadAll	hg/lib/bdgpExprLink.c	/^struct bdgpExprLink *bdgpExprLinkLoadAll(char *fileName) $/;"	f
bdgpExprLinkLoadAllByChar	hg/lib/bdgpExprLink.c	/^struct bdgpExprLink *bdgpExprLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
bdgpExprLinkLoadAllByTab	hg/inc/bdgpExprLink.h	41;"	d
bdgpExprLinkOutput	hg/lib/bdgpExprLink.c	/^void bdgpExprLinkOutput(struct bdgpExprLink *el, FILE *f, char sep, char lastSep) $/;"	f
bdgpExprLinkStaticLoad	hg/lib/bdgpExprLink.c	/^void bdgpExprLinkStaticLoad(char **row, struct bdgpExprLink *ret)$/;"	f
bdgpExprLinkTabOut	hg/inc/bdgpExprLink.h	60;"	d
bdgpGeneInfo	hg/inc/bdgpGeneInfo.h	/^struct bdgpGeneInfo$/;"	s
bdgpGeneInfoCommaIn	hg/lib/bdgpGeneInfo.c	/^struct bdgpGeneInfo *bdgpGeneInfoCommaIn(char **pS, struct bdgpGeneInfo *ret)$/;"	f
bdgpGeneInfoCommaOut	hg/inc/bdgpGeneInfo.h	60;"	d
bdgpGeneInfoFree	hg/lib/bdgpGeneInfo.c	/^void bdgpGeneInfoFree(struct bdgpGeneInfo **pEl)$/;"	f
bdgpGeneInfoFreeList	hg/lib/bdgpGeneInfo.c	/^void bdgpGeneInfoFreeList(struct bdgpGeneInfo **pList)$/;"	f
bdgpGeneInfoLoad	hg/lib/bdgpGeneInfo.c	/^struct bdgpGeneInfo *bdgpGeneInfoLoad(char **row)$/;"	f
bdgpGeneInfoLoadAll	hg/lib/bdgpGeneInfo.c	/^struct bdgpGeneInfo *bdgpGeneInfoLoadAll(char *fileName) $/;"	f
bdgpGeneInfoLoadAllByChar	hg/lib/bdgpGeneInfo.c	/^struct bdgpGeneInfo *bdgpGeneInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
bdgpGeneInfoLoadAllByTab	hg/inc/bdgpGeneInfo.h	38;"	d
bdgpGeneInfoOutput	hg/lib/bdgpGeneInfo.c	/^void bdgpGeneInfoOutput(struct bdgpGeneInfo *el, FILE *f, char sep, char lastSep) $/;"	f
bdgpGeneInfoStaticLoad	hg/lib/bdgpGeneInfo.c	/^void bdgpGeneInfoStaticLoad(char **row, struct bdgpGeneInfo *ret)$/;"	f
bdgpGeneInfoTabOut	hg/inc/bdgpGeneInfo.h	57;"	d
bdgpName	hg/inc/bdgpExprLink.h	/^    char *bdgpName;	\/* BDGP gene ID *\/$/;"	m	struct:bdgpExprLink
bdgpName	hg/inc/bdgpGeneInfo.h	/^    char *bdgpName;	\/* BDGP annotation gene name *\/$/;"	m	struct:bdgpGeneInfo
bdgpName	hg/inc/bdgpSwissProt.h	/^    char *bdgpName;	\/* BDGP annotation gene name *\/$/;"	m	struct:bdgpSwissProt
bdgpSwissProt	hg/inc/bdgpSwissProt.h	/^struct bdgpSwissProt$/;"	s
bdgpSwissProtCommaIn	hg/lib/bdgpSwissProt.c	/^struct bdgpSwissProt *bdgpSwissProtCommaIn(char **pS, struct bdgpSwissProt *ret)$/;"	f
bdgpSwissProtCommaOut	hg/inc/bdgpSwissProt.h	62;"	d
bdgpSwissProtFree	hg/lib/bdgpSwissProt.c	/^void bdgpSwissProtFree(struct bdgpSwissProt **pEl)$/;"	f
bdgpSwissProtFreeList	hg/lib/bdgpSwissProt.c	/^void bdgpSwissProtFreeList(struct bdgpSwissProt **pList)$/;"	f
bdgpSwissProtLoad	hg/lib/bdgpSwissProt.c	/^struct bdgpSwissProt *bdgpSwissProtLoad(char **row)$/;"	f
bdgpSwissProtLoadAll	hg/lib/bdgpSwissProt.c	/^struct bdgpSwissProt *bdgpSwissProtLoadAll(char *fileName) $/;"	f
bdgpSwissProtLoadAllByChar	hg/lib/bdgpSwissProt.c	/^struct bdgpSwissProt *bdgpSwissProtLoadAllByChar(char *fileName, char chopper) $/;"	f
bdgpSwissProtLoadAllByTab	hg/inc/bdgpSwissProt.h	40;"	d
bdgpSwissProtOutput	hg/lib/bdgpSwissProt.c	/^void bdgpSwissProtOutput(struct bdgpSwissProt *el, FILE *f, char sep, char lastSep) $/;"	f
bdgpSwissProtStaticLoad	hg/lib/bdgpSwissProt.c	/^void bdgpSwissProtStaticLoad(char **row, struct bdgpSwissProt *ret)$/;"	f
bdgpSwissProtTabOut	hg/inc/bdgpSwissProt.h	59;"	d
beCount	hg/inc/fishClones.h	/^    unsigned beCount;	\/* Number of BAC end sequences associated with this clone *\/$/;"	m	struct:fishClones
beNames	hg/inc/fishClones.h	/^    char **beNames;	\/* Accessions of BAC ends *\/$/;"	m	struct:fishClones
beUnknown	inc/common.h	/^    beUnknown=0,              \/\/ Not yet set$/;"	e	enum:enumBool
bed	hg/inc/liftOver.h	/^    bed = 1,$/;"	e	enum:liftOverFileType
bed	hg/inc/wiggle.h	/^    struct bed *bed;		\/*	data in bed format	*\/$/;"	m	struct:wiggleDataStream	typeref:struct:wiggleDataStream::bed
bed	inc/basicBed.h	/^struct bed$/;"	s
bed12Source	hg/inc/bed12Source.h	/^struct bed12Source$/;"	s
bed12SourceCommaIn	hg/lib/bed12Source.c	/^struct bed12Source *bed12SourceCommaIn(char **pS, struct bed12Source *ret)$/;"	f
bed12SourceCommaOut	hg/inc/bed12Source.h	63;"	d
bed12SourceFree	hg/lib/bed12Source.c	/^void bed12SourceFree(struct bed12Source **pEl)$/;"	f
bed12SourceFreeList	hg/lib/bed12Source.c	/^void bed12SourceFreeList(struct bed12Source **pList)$/;"	f
bed12SourceLoad	hg/lib/bed12Source.c	/^struct bed12Source *bed12SourceLoad(char **row)$/;"	f
bed12SourceLoadAll	hg/lib/bed12Source.c	/^struct bed12Source *bed12SourceLoadAll(char *fileName) $/;"	f
bed12SourceLoadAllByChar	hg/lib/bed12Source.c	/^struct bed12Source *bed12SourceLoadAllByChar(char *fileName, char chopper) $/;"	f
bed12SourceLoadAllByTab	hg/inc/bed12Source.h	41;"	d
bed12SourceOutput	hg/lib/bed12Source.c	/^void bed12SourceOutput(struct bed12Source *el, FILE *f, char sep, char lastSep) $/;"	f
bed12SourceTabOut	hg/inc/bed12Source.h	60;"	d
bed12wSeq	hg/inc/bed12wSeq.h	/^struct bed12wSeq$/;"	s
bed12wSeqCommaIn	hg/lib/bed12wSeq.c	/^struct bed12wSeq *bed12wSeqCommaIn(char **pS, struct bed12wSeq *ret)$/;"	f
bed12wSeqCommaOut	hg/inc/bed12wSeq.h	90;"	d
bed12wSeqFree	hg/lib/bed12wSeq.c	/^void bed12wSeqFree(struct bed12wSeq **pEl)$/;"	f
bed12wSeqFreeList	hg/lib/bed12wSeq.c	/^void bed12wSeqFreeList(struct bed12wSeq **pList)$/;"	f
bed12wSeqLoad	hg/lib/bed12wSeq.c	/^struct bed12wSeq *bed12wSeqLoad(char **row)$/;"	f
bed12wSeqLoadAll	hg/lib/bed12wSeq.c	/^struct bed12wSeq *bed12wSeqLoadAll(char *fileName) $/;"	f
bed12wSeqLoadAllByChar	hg/lib/bed12wSeq.c	/^struct bed12wSeq *bed12wSeqLoadAllByChar(char *fileName, char chopper) $/;"	f
bed12wSeqLoadAllByTab	hg/inc/bed12wSeq.h	43;"	d
bed12wSeqLoadByQuery	hg/lib/bed12wSeq.c	/^struct bed12wSeq *bed12wSeqLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
bed12wSeqOutput	hg/lib/bed12wSeq.c	/^void bed12wSeqOutput(struct bed12wSeq *el, FILE *f, char sep, char lastSep) $/;"	f
bed12wSeqSaveToDb	hg/lib/bed12wSeq.c	/^void bed12wSeqSaveToDb(struct sqlConnection *conn, struct bed12wSeq *el, char *tableName, int updateSize)$/;"	f
bed12wSeqSaveToDbEscaped	hg/lib/bed12wSeq.c	/^void bed12wSeqSaveToDbEscaped(struct sqlConnection *conn, struct bed12wSeq *el, char *tableName, int updateSize)$/;"	f
bed12wSeqTabOut	hg/inc/bed12wSeq.h	87;"	d
bed3	inc/basicBed.h	/^struct bed3$/;"	s
bed3New	lib/basicBed.c	/^struct bed3 *bed3New(char *chrom, int start, int end)$/;"	f
bed4	inc/basicBed.h	/^struct bed4$/;"	s
bed5FloatScore	hg/inc/bed5FloatScore.h	/^struct bed5FloatScore$/;"	s
bed5FloatScoreCommaIn	hg/lib/bed5FloatScore.c	/^struct bed5FloatScore *bed5FloatScoreCommaIn(char **pS, struct bed5FloatScore *ret)$/;"	f
bed5FloatScoreCommaOut	hg/inc/bed5FloatScore.h	60;"	d
bed5FloatScoreFree	hg/lib/bed5FloatScore.c	/^void bed5FloatScoreFree(struct bed5FloatScore **pEl)$/;"	f
bed5FloatScoreFreeList	hg/lib/bed5FloatScore.c	/^void bed5FloatScoreFreeList(struct bed5FloatScore **pList)$/;"	f
bed5FloatScoreLoad	hg/lib/bed5FloatScore.c	/^struct bed5FloatScore *bed5FloatScoreLoad(char **row)$/;"	f
bed5FloatScoreLoadAll	hg/lib/bed5FloatScore.c	/^struct bed5FloatScore *bed5FloatScoreLoadAll(char *fileName) $/;"	f
bed5FloatScoreLoadAllByChar	hg/lib/bed5FloatScore.c	/^struct bed5FloatScore *bed5FloatScoreLoadAllByChar(char *fileName, char chopper) $/;"	f
bed5FloatScoreLoadAllByTab	hg/inc/bed5FloatScore.h	38;"	d
bed5FloatScoreOutput	hg/lib/bed5FloatScore.c	/^void bed5FloatScoreOutput(struct bed5FloatScore *el, FILE *f, char sep, char lastSep) $/;"	f
bed5FloatScoreStaticLoad	hg/lib/bed5FloatScore.c	/^void bed5FloatScoreStaticLoad(char **row, struct bed5FloatScore *ret)$/;"	f
bed5FloatScoreTabOut	hg/inc/bed5FloatScore.h	57;"	d
bed5Pval	hg/inc/bed5Pval.h	/^struct bed5Pval$/;"	s
bed5PvalCommaIn	hg/lib/bed5Pval.c	/^struct bed5Pval *bed5PvalCommaIn(char **pS, struct bed5Pval *ret)$/;"	f
bed5PvalCommaOut	hg/inc/bed5Pval.h	60;"	d
bed5PvalFree	hg/lib/bed5Pval.c	/^void bed5PvalFree(struct bed5Pval **pEl)$/;"	f
bed5PvalFreeList	hg/lib/bed5Pval.c	/^void bed5PvalFreeList(struct bed5Pval **pList)$/;"	f
bed5PvalLoad	hg/lib/bed5Pval.c	/^struct bed5Pval *bed5PvalLoad(char **row)$/;"	f
bed5PvalLoadAll	hg/lib/bed5Pval.c	/^struct bed5Pval *bed5PvalLoadAll(char *fileName) $/;"	f
bed5PvalLoadAllByChar	hg/lib/bed5Pval.c	/^struct bed5Pval *bed5PvalLoadAllByChar(char *fileName, char chopper) $/;"	f
bed5PvalLoadAllByTab	hg/inc/bed5Pval.h	38;"	d
bed5PvalOutput	hg/lib/bed5Pval.c	/^void bed5PvalOutput(struct bed5Pval *el, FILE *f, char sep, char lastSep) $/;"	f
bed5PvalStaticLoad	hg/lib/bed5Pval.c	/^void bed5PvalStaticLoad(char **row, struct bed5Pval *ret)$/;"	f
bed5PvalTabOut	hg/inc/bed5Pval.h	57;"	d
bed6FloatScore	hg/inc/bed6FloatScore.h	/^struct bed6FloatScore$/;"	s
bed6FloatScoreCommaIn	hg/lib/bed6FloatScore.c	/^struct bed6FloatScore *bed6FloatScoreCommaIn(char **pS, struct bed6FloatScore *ret)$/;"	f
bed6FloatScoreCommaOut	hg/inc/bed6FloatScore.h	60;"	d
bed6FloatScoreFree	hg/lib/bed6FloatScore.c	/^void bed6FloatScoreFree(struct bed6FloatScore **pEl)$/;"	f
bed6FloatScoreFreeList	hg/lib/bed6FloatScore.c	/^void bed6FloatScoreFreeList(struct bed6FloatScore **pList)$/;"	f
bed6FloatScoreLoad	hg/lib/bed6FloatScore.c	/^struct bed6FloatScore *bed6FloatScoreLoad(char **row)$/;"	f
bed6FloatScoreLoadAll	hg/lib/bed6FloatScore.c	/^struct bed6FloatScore *bed6FloatScoreLoadAll(char *fileName) $/;"	f
bed6FloatScoreLoadAllByChar	hg/lib/bed6FloatScore.c	/^struct bed6FloatScore *bed6FloatScoreLoadAllByChar(char *fileName, char chopper) $/;"	f
bed6FloatScoreLoadAllByTab	hg/inc/bed6FloatScore.h	38;"	d
bed6FloatScoreOutput	hg/lib/bed6FloatScore.c	/^void bed6FloatScoreOutput(struct bed6FloatScore *el, FILE *f, char sep, char lastSep) $/;"	f
bed6FloatScoreStaticLoad	hg/lib/bed6FloatScore.c	/^void bed6FloatScoreStaticLoad(char **row, struct bed6FloatScore *ret)$/;"	f
bed6FloatScoreTabOut	hg/inc/bed6FloatScore.h	57;"	d
bed8Attrs	hg/inc/bed8Attrs.h	/^struct bed8Attrs$/;"	s
bed8AttrsCommaIn	hg/lib/bed8Attrs.c	/^struct bed8Attrs *bed8AttrsCommaIn(char **pS, struct bed8Attrs *ret)$/;"	f
bed8AttrsCommaOut	hg/inc/bed8Attrs.h	61;"	d
bed8AttrsFree	hg/lib/bed8Attrs.c	/^void bed8AttrsFree(struct bed8Attrs **pEl)$/;"	f
bed8AttrsFreeList	hg/lib/bed8Attrs.c	/^void bed8AttrsFreeList(struct bed8Attrs **pList)$/;"	f
bed8AttrsLoad	hg/lib/bed8Attrs.c	/^struct bed8Attrs *bed8AttrsLoad(char **row)$/;"	f
bed8AttrsLoadAll	hg/lib/bed8Attrs.c	/^struct bed8Attrs *bed8AttrsLoadAll(char *fileName) $/;"	f
bed8AttrsLoadAllByChar	hg/lib/bed8Attrs.c	/^struct bed8Attrs *bed8AttrsLoadAllByChar(char *fileName, char chopper) $/;"	f
bed8AttrsLoadAllByTab	hg/inc/bed8Attrs.h	39;"	d
bed8AttrsOutput	hg/lib/bed8Attrs.c	/^void bed8AttrsOutput(struct bed8Attrs *el, FILE *f, char sep, char lastSep) $/;"	f
bed8AttrsTabOut	hg/inc/bed8Attrs.h	58;"	d
bedAsDef	lib/basicBed.c	/^char *bedAsDef(int bedFieldCount, int totalFieldCount)$/;"	f
bedBlockSizeInRange	lib/basicBed.c	/^int bedBlockSizeInRange(struct bed *bed, int rangeStart, int rangeEnd)$/;"	f
bedChromEnd	hg/lib/wigAsciiToBinary.c	/^static unsigned long long bedChromEnd = 0;	\/* for bed format *\/$/;"	v	file:
bedChromStart	hg/lib/wigAsciiToBinary.c	/^static unsigned long long bedChromStart = 0;	\/* for bed format *\/$/;"	v	file:
bedCmp	lib/basicBed.c	/^int bedCmp(const void *va, const void *vb)$/;"	f
bedCmpChromStrandStart	lib/basicBed.c	/^int bedCmpChromStrandStart(const void *va, const void *vb)$/;"	f
bedCmpEnd	lib/basicBed.c	/^int bedCmpEnd(const void *va, const void *vb)$/;"	f
bedCmpExtendedChr	hg/lib/hdb.c	/^int bedCmpExtendedChr(const void *va, const void *vb)$/;"	f
bedCmpPlusScore	lib/basicBed.c	/^int bedCmpPlusScore(const void *va, const void *vb)$/;"	f
bedCmpScore	lib/basicBed.c	/^int bedCmpScore(const void *va, const void *vb)$/;"	f
bedCmpSize	lib/basicBed.c	/^int bedCmpSize(const void *va, const void *vb)$/;"	f
bedCommaIn	lib/basicBed.c	/^struct bed *bedCommaIn(char **pS, struct bed *ret)$/;"	f
bedCommaInN	lib/basicBed.c	/^struct bed *bedCommaInN(char **pS, struct bed *ret, int fieldCount)$/;"	f
bedCommaOut	inc/basicBed.h	95;"	d
bedCommaOutN	inc/basicBed.h	187;"	d
bedCompatibleExtension	lib/basicBed.c	/^boolean bedCompatibleExtension(struct bed *oldBed, struct bed *newBed)$/;"	f
bedConstrained	hg/inc/wiggle.h	/^    boolean bedConstrained;	\/*	signal to output routines *\/$/;"	m	struct:wiggleDataStream
bedDataValue	hg/lib/wigAsciiToBinary.c	/^static double bedDataValue = 0.0;		\/* for bed format *\/$/;"	v	file:
bedDefaultFormat	hg/lib/hgFindSpecCustom.c	/^static char *bedDefaultFormat =$/;"	v	file:
bedDetail	hg/inc/bedDetail.h	/^struct bedDetail$/;"	s
bedDetailAsObj	hg/lib/bedDetail.c	/^struct asObject *bedDetailAsObj()$/;"	f
bedDetailAutoSqlString	hg/lib/bedDetail.c	/^static char *bedDetailAutoSqlString =$/;"	v	file:
bedDetailCommaIn	hg/lib/bedDetail.c	/^struct bedDetail *bedDetailCommaIn(char **pS, struct bedDetail *ret)$/;"	f
bedDetailCommaOut	hg/inc/bedDetail.h	66;"	d
bedDetailFactory	hg/lib/customFactory.c	/^static struct customFactory bedDetailFactory =$/;"	v	typeref:struct:customFactory	file:
bedDetailFinish	hg/lib/customFactory.c	/^static struct customTrack *bedDetailFinish(struct customTrack *track, struct bedDetail *itemList)$/;"	f	file:
bedDetailFree	hg/lib/bedDetail.c	/^void bedDetailFree(struct bedDetail **pEl)$/;"	f
bedDetailFreeList	hg/lib/bedDetail.c	/^void bedDetailFreeList(struct bedDetail **pList)$/;"	f
bedDetailLineFileLoad	hg/lib/bedDetail.c	/^struct bedDetail *bedDetailLineFileLoad (char **row, int size, struct lineFile *lf)$/;"	f
bedDetailLoad	hg/lib/bedDetail.c	/^struct bedDetail *bedDetailLoad(char **row)$/;"	f
bedDetailLoadAll	hg/lib/bedDetail.c	/^struct bedDetail *bedDetailLoadAll(char *fileName)$/;"	f
bedDetailLoadAllByChar	hg/lib/bedDetail.c	/^struct bedDetail *bedDetailLoadAllByChar(char *fileName, char chopper)$/;"	f
bedDetailLoadAllByTab	hg/inc/bedDetail.h	44;"	d
bedDetailLoadWithGaps	hg/lib/bedDetail.c	/^struct bedDetail *bedDetailLoadWithGaps(char **row, int size)$/;"	f
bedDetailLoader	hg/lib/customFactory.c	/^static struct customTrack *bedDetailLoader(struct customFactory *fac,$/;"	f	file:
bedDetailLoaderPipe	hg/lib/customFactory.c	/^static struct pipeline *bedDetailLoaderPipe(struct customTrack *track)$/;"	f	file:
bedDetailOutput	hg/lib/bedDetail.c	/^void bedDetailOutput(struct bedDetail *el, FILE *f, char sep, char lastSep, int size)$/;"	f
bedDetailRecognizer	hg/lib/customFactory.c	/^static boolean bedDetailRecognizer(struct customFactory *fac,$/;"	f	file:
bedDetailSizeFromType	hg/lib/trackDbCustom.c	/^int bedDetailSizeFromType(char *type)$/;"	f
bedDetailTabOut	hg/inc/bedDetail.h	63;"	d
bedElCount	hg/lib/wiggleUtils.c	/^    unsigned bedElCount;	\/*	bed element count	*\/$/;"	m	struct:wigStatsAcc	file:
bedElEnd	hg/lib/wiggleUtils.c	/^    unsigned bedElEnd;		\/*	bed element end coord	*\/$/;"	m	struct:wigStatsAcc	file:
bedElStart	hg/lib/wiggleUtils.c	/^    unsigned bedElStart;	\/*	bed element start coord	*\/$/;"	m	struct:wigStatsAcc	file:
bedElement	hg/lib/wigDataStream.c	/^static struct bed *bedElement(char *chrom, unsigned start, unsigned end,$/;"	f	file:
bedElement	hg/lib/wiggleUtils.c	/^static struct bed *bedElement(char *chrom, unsigned start, unsigned end,$/;"	f	file:
bedEndThinSize	lib/basicBed.c	/^int bedEndThinSize(struct bed *bed)$/;"	f
bedExactMatch	lib/basicBed.c	/^boolean bedExactMatch(struct bed *oldBed, struct bed *newBed)$/;"	f
bedFactory	hg/lib/customFactory.c	/^static struct customFactory bedFactory =$/;"	v	typeref:struct:customFactory	file:
bedFiltCfgUi	hg/lib/hui.c	/^void bedFiltCfgUi(struct cart *cart, struct trackDb *tdb, char *prefix, char *title, boolean boxed)$/;"	f
bedFilter	hg/inc/bed.h	/^struct bedFilter$/;"	s
bedFilterByNameHash	hg/lib/bed.c	/^struct bed *bedFilterByNameHash(struct bed *bedList, struct hash *nameHash)$/;"	f
bedFilterByWildNames	hg/lib/bed.c	/^struct bed *bedFilterByWildNames(struct bed *bedList, struct slName *wildNames)$/;"	f
bedFilterChar	hg/lib/bed.c	/^boolean bedFilterChar(char value, enum charFilterType cft,$/;"	f
bedFilterDouble	hg/lib/bed.c	/^boolean bedFilterDouble(double value, enum numericFilterType nft, double *filterValues)$/;"	f
bedFilterInt	hg/lib/bed.c	/^boolean bedFilterInt(int value, enum numericFilterType nft, int *filterValues)$/;"	f
bedFilterList	hg/lib/bed.c	/^struct bed *bedFilterList(struct bed *bedListIn, struct bedFilter *bf)$/;"	f
bedFilterListInRange	hg/lib/bed.c	/^struct bed *bedFilterListInRange(struct bed *bedListIn, struct bedFilter *bf,$/;"	f
bedFilterLong	hg/lib/bed.c	/^boolean bedFilterLong(long long value, enum numericFilterType nft, long long *filterValues)$/;"	f
bedFilterOne	hg/lib/bed.c	/^boolean bedFilterOne(struct bedFilter *bf, struct bed *bed)$/;"	f
bedFilterString	hg/lib/bed.c	/^boolean bedFilterString(char *value, enum stringFilterType sft, char **filterValues, boolean invert)$/;"	f
bedFinish	hg/lib/customFactory.c	/^static struct customTrack *bedFinish(struct customTrack *track,$/;"	f	file:
bedFree	lib/basicBed.c	/^void bedFree(struct bed **pEl)$/;"	f
bedFreeList	lib/basicBed.c	/^void bedFreeList(struct bed **pList)$/;"	f
bedFromGenePred	hg/lib/bed.c	/^struct bed *bedFromGenePred(struct genePred *genePred)$/;"	f
bedFromPsl	lib/basicBed.c	/^struct bed *bedFromPsl(struct psl *psl)$/;"	f
bedGraph	hg/inc/bedGraph.h	/^struct bedGraph$/;"	s
bedGraphChrom	lib/bwgCreate.c	/^struct bedGraphChrom$/;"	s	file:
bedGraphChromCmpName	lib/bwgCreate.c	/^static int bedGraphChromCmpName(const void *va, const void *vb)$/;"	f	file:
bedGraphFactory	hg/lib/customFactory.c	/^static struct customFactory bedGraphFactory =$/;"	v	typeref:struct:customFactory	file:
bedGraphList	inc/bwgInternal.h	/^    struct bwgBedGraphItem *bedGraphList;		\/* A linked list *\/$/;"	m	union:bwgItem	typeref:struct:bwgItem::bwgBedGraphItem
bedGraphLoader	hg/lib/customFactory.c	/^static struct customTrack *bedGraphLoader(struct customFactory *fac,$/;"	f	file:
bedGraphSectionToIntervals	lib/metaWig.c	/^static void bedGraphSectionToIntervals(struct bwgSection *section, struct lm *lm,$/;"	f	file:
bedIntoRangeTree	lib/basicBed.c	/^void bedIntoRangeTree(struct bed *bed, struct rbTree *rangeTree)$/;"	f
bedItemRgb	hg/lib/bedCart.c	/^boolean bedItemRgb(struct trackDb *tdb)$/;"	f
bedKnownFields	inc/basicBed.h	41;"	d
bedLine	inc/basicBed.h	/^struct bedLine$/;"	s
bedLineCmp	lib/basicBed.c	/^int bedLineCmp(const void *va, const void *vb)$/;"	f
bedLineFree	lib/basicBed.c	/^void bedLineFree(struct bedLine **pBl)$/;"	f
bedLineFreeList	lib/basicBed.c	/^void bedLineFreeList(struct bedLine **pList)$/;"	f
bedLineNew	lib/basicBed.c	/^struct bedLine *bedLineNew(char *line)$/;"	f
bedList	hg/inc/customTrack.h	/^    struct bed *bedList;	\/* List of beds. *\/$/;"	m	struct:customTrack	typeref:struct:customTrack::bed
bedListNextDifferentChrom	lib/basicBed.c	/^struct bed *bedListNextDifferentChrom(struct bed *bedList)$/;"	f
bedLoad	lib/basicBed.c	/^struct bed *bedLoad(char **row)$/;"	f
bedLoad12	lib/basicBed.c	/^struct bed *bedLoad12(char **row)$/;"	f
bedLoad3	lib/basicBed.c	/^struct bed *bedLoad3(char **row)$/;"	f
bedLoad5	lib/basicBed.c	/^struct bed *bedLoad5(char **row)$/;"	f
bedLoad6	lib/basicBed.c	/^struct bed *bedLoad6(char **row)$/;"	f
bedLoadAll	lib/basicBed.c	/^struct bed *bedLoadAll(char *fileName)$/;"	f
bedLoadAllReturnFieldCount	lib/basicBed.c	/^void bedLoadAllReturnFieldCount(char *fileName, struct bed **retList, int *retFieldCount)$/;"	f
bedLoadN	lib/basicBed.c	/^struct bed *bedLoadN(char *row[], int wordCount)$/;"	f
bedLoadNAll	lib/basicBed.c	/^struct bed *bedLoadNAll(char *fileName, int numFields) $/;"	f
bedLoadNAllChrom	lib/basicBed.c	/^struct bed *bedLoadNAllChrom(char *fileName, int numFields, char* chrom) $/;"	f
bedLoader	hg/lib/customFactory.c	/^static struct customTrack *bedLoader(struct customFactory *fac,$/;"	f	file:
bedLoaderPipe	hg/lib/customFactory.c	/^static struct pipeline *bedLoaderPipe(struct customTrack *track)$/;"	f	file:
bedOut	hg/inc/wiggle.h	/^    int (*bedOut)(struct wiggleDataStream *wds, char *fileName, boolean sort);$/;"	m	struct:wiggleDataStream
bedOut	hg/lib/wigDataStream.c	/^static int bedOut(struct wiggleDataStream *wds, char *fileName, boolean sort)$/;"	f	file:
bedOutput	lib/basicBed.c	/^void bedOutput(struct bed *el, FILE *f, char sep, char lastSep) $/;"	f
bedOutputN	lib/basicBed.c	/^void bedOutputN(struct bed *el, int wordCount, FILE *f, char sep, char lastSep)$/;"	f
bedOutputN_Opt	lib/basicBed.c	/^static void bedOutputN_Opt(struct bed *el, int wordCount, FILE *f,$/;"	f	file:
bedOutputNitemRgb	lib/basicBed.c	/^void bedOutputNitemRgb(struct bed *el, int wordCount, FILE *f,$/;"	f
bedOverBig	hg/lib/liftOver.c	/^static int bedOverBig(struct lineFile *lf, int refCount, $/;"	f	file:
bedOverSmall	hg/lib/liftOver.c	/^static int bedOverSmall(struct lineFile *lf, int fieldCount, $/;"	f	file:
bedParseRgb	lib/basicBed.c	/^int bedParseRgb(char *itemRgb)$/;"	f
bedRangeExp	hg/lib/hgFind.c	/^char *bedRangeExp = $/;"	v
bedRangeTreeOverlap	lib/basicBed.c	/^int bedRangeTreeOverlap(struct bed *bed, struct rbTree *rangeTree)$/;"	f
bedRecognizer	hg/lib/customFactory.c	/^static boolean bedRecognizer(struct customFactory *fac,$/;"	f	file:
bedSameStrandOverlap	lib/basicBed.c	/^int bedSameStrandOverlap(struct bed *a, struct bed *b)$/;"	f
bedScoreHasCfgUi	hg/lib/hui.c	/^boolean bedScoreHasCfgUi(struct trackDb *tdb)$/;"	f
bedSortFile	lib/basicBed.c	/^void bedSortFile(char *inFile, char *outFile)$/;"	f
bedStartThinSize	lib/basicBed.c	/^int bedStartThinSize(struct bed *bed)$/;"	f
bedStaticLoad	lib/basicBed.c	/^void bedStaticLoad(char **row, struct bed *ret)$/;"	f
bedTabOut	inc/basicBed.h	92;"	d
bedTabOutN	inc/basicBed.h	184;"	d
bedTabOutNitemRgb	inc/basicBed.h	180;"	d
bedThickOnly	lib/basicBed.c	/^struct bed *bedThickOnly(struct bed *in)$/;"	f
bedThickOnlyList	lib/basicBed.c	/^struct bed *bedThickOnlyList(struct bed *inList)$/;"	f
bedToGenePred	hg/lib/bed.c	/^struct genePred *bedToGenePred(struct bed *bed)$/;"	f
bedToRangeList	hg/lib/liftOver.c	/^static struct liftRange *bedToRangeList(struct bed *bed)$/;"	f	file:
bedToRangeTree	lib/basicBed.c	/^struct rbTree *bedToRangeTree(struct bed *bed)$/;"	f
bedTotalBlockSize	lib/basicBed.c	/^int bedTotalBlockSize(struct bed *bed)$/;"	f
bedTotalSize	lib/basicBed.c	/^long long bedTotalSize(struct bed *bedList)$/;"	f
bedTotalThickBlockSize	lib/basicBed.c	/^int bedTotalThickBlockSize(struct bed *bed)$/;"	f
bedsIntoKeeperHash	hg/lib/bed.c	/^struct hash *bedsIntoKeeperHash(struct bed *bedList)$/;"	f
begin	hg/inc/genbankBlackList.h	/^int begin;     \/* starting value to range *\/$/;"	m	struct:blackListRange
beginBand	hg/inc/stsMap.h	/^    char *beginBand;	\/* Beginning of range of bands on FISH map *\/$/;"	m	struct:stsMap
beginBand	hg/inc/stsMarker.h	/^    char *beginBand;	\/* Beginning of range of bands on FISH map *\/$/;"	m	struct:stsMarker
bestAliCount	hg/inc/pseudoGeneLink.h	/^    unsigned bestAliCount;	\/* number of good mrnas aligning *\/$/;"	m	struct:pseudoGeneLink
bestAliCount	hg/inc/retroMrnaInfo.h	/^    unsigned bestAliCount;	\/* number of good mrnas aligning col26 *\/$/;"	m	struct:retroMrnaInfo
bestAliCount	hg/inc/ucscRetroInfo.h	/^    unsigned bestAliCount;	\/* number of good mrnas aligning col26 *\/$/;"	m	struct:ucscRetroInfo
bestHist	hg/inc/mammalPsg.h	/^    unsigned bestHist;	\/* Most likely history (Bayesian analysis) *\/$/;"	m	struct:mammalPsg
bestHistPP	hg/inc/mammalPsg.h	/^    float bestHistPP;	\/* Probability of the most likely history *\/$/;"	m	struct:mammalPsg
bestMerger	jkOwnLib/fuzzyFind.c	/^boolean bestMerger(struct protoGene *list, enum ffStringency stringency,$/;"	f
bestPred	lib/chainBlock.c	/^    struct kdBranch *bestPred;	\/* Best predecessor. *\/$/;"	m	struct:kdLeaf	typeref:struct:kdLeaf::kdBranch	file:
bestPredecessor	lib/chainBlock.c	/^static struct predScore bestPredecessor($/;"	f	file:
bestWayIn	jkOwnLib/supStitch.c	/^    struct ssEdge *bestWayIn;   \/* Dynamic programming best edge in. *\/$/;"	m	struct:ssNode	typeref:struct:ssNode::ssEdge	file:
bestd	lib/axtAffine.c	/^int  bestd;                         $/;"	m	struct:cell2L	file:
besti	lib/axtAffine.c	/^int  besti;                          $/;"	m	struct:cell2L	file:
bestm	lib/axtAffine.c	/^int  bestm;   \/* best score array *\/$/;"	m	struct:cell2L	file:
betweenChromHeight	hg/inc/genoLay.h	/^    int betweenChromHeight;		\/* Height between chromosomes. *\/$/;"	m	struct:genoLay
betweenChromOffsetY	hg/inc/genoLay.h	/^    int betweenChromOffsetY;		\/* Start of area between chroms. *\/$/;"	m	struct:genoLay
bfBadHeader	lib/blastParse.c	/^static void bfBadHeader(struct blastFile *bf)$/;"	f	file:
bfCheckGraph	lib/dgRange.c	/^static boolean bfCheckGraph(struct bfGraph *graph)$/;"	f	file:
bfEdge	lib/dgRange.c	/^struct bfEdge$/;"	s	file:
bfError	lib/blastParse.c	/^static void bfError(struct blastFile *bf, char *message)$/;"	f	file:
bfFind	jkOwnLib/patSpace.c	/^void bfFind(struct patSpace *ps, int block, struct blockPos *ret)$/;"	f
bfGraph	lib/dgRange.c	/^struct bfGraph$/;"	s	file:
bfGraphFree	lib/dgRange.c	/^static void bfGraphFree(struct bfGraph **pGraph)$/;"	f	file:
bfGraphFromRangeGraph	lib/dgRange.c	/^static struct bfGraph *bfGraphFromRangeGraph(struct diGraph *rangeGraph, $/;"	f	file:
bfNeedNextLine	lib/blastParse.c	/^static char *bfNeedNextLine(struct blastFile *bf)$/;"	f	file:
bfNextLine	lib/blastParse.c	/^static char *bfNextLine(struct blastFile *bf)$/;"	f	file:
bfRange	lib/dgRange.c	/^struct bfRange $/;"	s	file:
bfSearchForLine	lib/blastParse.c	/^static char *bfSearchForLine(struct blastFile *bf, char *start)$/;"	f	file:
bfSkipBlankLines	lib/blastParse.c	/^static boolean bfSkipBlankLines(struct blastFile *bf)$/;"	f	file:
bfSyntax	lib/blastParse.c	/^static void bfSyntax(struct blastFile *bf)$/;"	f	file:
bfUnexpectedEof	lib/blastParse.c	/^static void bfUnexpectedEof(struct blastFile *bf)$/;"	f	file:
bfVertex	lib/dgRange.c	/^struct bfVertex$/;"	s	file:
bfWarn	lib/blastParse.c	/^static void bfWarn(struct blastFile *bf, char *message)$/;"	f	file:
bgcolor	lib/gifcodes.h	/^	unsigned char bgcolor;$/;"	m	struct:gif_header
bgiGeneInfo	hg/inc/bgiGeneInfo.h	/^struct bgiGeneInfo$/;"	s
bgiGeneInfoCommaIn	hg/lib/bgiGeneInfo.c	/^struct bgiGeneInfo *bgiGeneInfoCommaIn(char **pS, struct bgiGeneInfo *ret)$/;"	f
bgiGeneInfoCommaOut	hg/inc/bgiGeneInfo.h	58;"	d
bgiGeneInfoFree	hg/lib/bgiGeneInfo.c	/^void bgiGeneInfoFree(struct bgiGeneInfo **pEl)$/;"	f
bgiGeneInfoFreeList	hg/lib/bgiGeneInfo.c	/^void bgiGeneInfoFreeList(struct bgiGeneInfo **pList)$/;"	f
bgiGeneInfoLoad	hg/lib/bgiGeneInfo.c	/^struct bgiGeneInfo *bgiGeneInfoLoad(char **row)$/;"	f
bgiGeneInfoLoadAll	hg/lib/bgiGeneInfo.c	/^struct bgiGeneInfo *bgiGeneInfoLoadAll(char *fileName) $/;"	f
bgiGeneInfoLoadAllByChar	hg/lib/bgiGeneInfo.c	/^struct bgiGeneInfo *bgiGeneInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
bgiGeneInfoLoadAllByTab	hg/inc/bgiGeneInfo.h	36;"	d
bgiGeneInfoOutput	hg/lib/bgiGeneInfo.c	/^void bgiGeneInfoOutput(struct bgiGeneInfo *el, FILE *f, char sep, char lastSep) $/;"	f
bgiGeneInfoStaticLoad	hg/lib/bgiGeneInfo.c	/^void bgiGeneInfoStaticLoad(char **row, struct bgiGeneInfo *ret)$/;"	f
bgiGeneInfoTabOut	hg/inc/bgiGeneInfo.h	55;"	d
bgiGeneSnp	hg/inc/bgiGeneSnp.h	/^struct bgiGeneSnp$/;"	s
bgiGeneSnpCommaIn	hg/lib/bgiGeneSnp.c	/^struct bgiGeneSnp *bgiGeneSnpCommaIn(char **pS, struct bgiGeneSnp *ret)$/;"	f
bgiGeneSnpCommaOut	hg/inc/bgiGeneSnp.h	60;"	d
bgiGeneSnpFree	hg/lib/bgiGeneSnp.c	/^void bgiGeneSnpFree(struct bgiGeneSnp **pEl)$/;"	f
bgiGeneSnpFreeList	hg/lib/bgiGeneSnp.c	/^void bgiGeneSnpFreeList(struct bgiGeneSnp **pList)$/;"	f
bgiGeneSnpLoad	hg/lib/bgiGeneSnp.c	/^struct bgiGeneSnp *bgiGeneSnpLoad(char **row)$/;"	f
bgiGeneSnpLoadAll	hg/lib/bgiGeneSnp.c	/^struct bgiGeneSnp *bgiGeneSnpLoadAll(char *fileName) $/;"	f
bgiGeneSnpLoadAllByChar	hg/lib/bgiGeneSnp.c	/^struct bgiGeneSnp *bgiGeneSnpLoadAllByChar(char *fileName, char chopper) $/;"	f
bgiGeneSnpLoadAllByTab	hg/inc/bgiGeneSnp.h	38;"	d
bgiGeneSnpOutput	hg/lib/bgiGeneSnp.c	/^void bgiGeneSnpOutput(struct bgiGeneSnp *el, FILE *f, char sep, char lastSep) $/;"	f
bgiGeneSnpStaticLoad	hg/lib/bgiGeneSnp.c	/^void bgiGeneSnpStaticLoad(char **row, struct bgiGeneSnp *ret)$/;"	f
bgiGeneSnpTabOut	hg/inc/bgiGeneSnp.h	57;"	d
bgiSnp	hg/inc/bgiSnp.h	/^struct bgiSnp$/;"	s
bgiSnpCommaIn	hg/lib/bgiSnp.c	/^struct bgiSnp *bgiSnpCommaIn(char **pS, struct bgiSnp *ret)$/;"	f
bgiSnpCommaOut	hg/inc/bgiSnp.h	73;"	d
bgiSnpFree	hg/lib/bgiSnp.c	/^void bgiSnpFree(struct bgiSnp **pEl)$/;"	f
bgiSnpFreeList	hg/lib/bgiSnp.c	/^void bgiSnpFreeList(struct bgiSnp **pList)$/;"	f
bgiSnpLoad	hg/lib/bgiSnp.c	/^struct bgiSnp *bgiSnpLoad(char **row)$/;"	f
bgiSnpLoadAll	hg/lib/bgiSnp.c	/^struct bgiSnp *bgiSnpLoadAll(char *fileName) $/;"	f
bgiSnpLoadAllByChar	hg/lib/bgiSnp.c	/^struct bgiSnp *bgiSnpLoadAllByChar(char *fileName, char chopper) $/;"	f
bgiSnpLoadAllByTab	hg/inc/bgiSnp.h	51;"	d
bgiSnpOutput	hg/lib/bgiSnp.c	/^void bgiSnpOutput(struct bgiSnp *el, FILE *f, char sep, char lastSep) $/;"	f
bgiSnpStaticLoad	hg/lib/bgiSnp.c	/^void bgiSnpStaticLoad(char **row, struct bgiSnp *ret)$/;"	f
bgiSnpTabOut	hg/inc/bgiSnp.h	70;"	d
bigBedAs	lib/bigBed.c	/^struct asObject *bigBedAs(struct bbiFile *bbi)$/;"	f
bigBedAsOrDefault	lib/bigBed.c	/^struct asObject *bigBedAsOrDefault(struct bbiFile *bbi)$/;"	f
bigBedAutoSqlText	lib/bigBed.c	/^char *bigBedAutoSqlText(struct bbiFile *bbi)$/;"	f
bigBedCoverageIntervals	lib/bigBed.c	/^static struct bbiInterval *bigBedCoverageIntervals(struct bbiFile *bbi,$/;"	f	file:
bigBedFactory	hg/lib/customFactory.c	/^static struct customFactory bigBedFactory =$/;"	v	typeref:struct:customFactory	file:
bigBedFileAsObjOrDefault	lib/bigBed.c	/^struct asObject *bigBedFileAsObjOrDefault(char *fileName)$/;"	f
bigBedFileCheckSigs	lib/bigBed.c	/^boolean bigBedFileCheckSigs(char *fileName)$/;"	f
bigBedFileClose	inc/bigBed.h	37;"	d
bigBedFileOpen	lib/bigBed.c	/^struct bbiFile *bigBedFileOpen(char *fileName)$/;"	f
bigBedInterval	inc/bigBed.h	/^struct bigBedInterval$/;"	s
bigBedIntervalQuery	lib/bigBed.c	/^struct bigBedInterval *bigBedIntervalQuery(struct bbiFile *bbi, char *chrom,$/;"	f
bigBedIntervalToRow	lib/bigBed.c	/^int bigBedIntervalToRow(struct bigBedInterval *interval, char *chrom, char *startBuf, char *endBuf,$/;"	f
bigBedItemCount	lib/bigBed.c	/^bits64 bigBedItemCount(struct bbiFile *bbi)$/;"	f
bigBedLoader	hg/lib/customFactory.c	/^static struct customTrack *bigBedLoader(struct customFactory *fac,$/;"	f	file:
bigBedRecognizer	hg/lib/customFactory.c	/^static boolean bigBedRecognizer(struct customFactory *fac,$/;"	f	file:
bigBedSig	inc/sig.h	93;"	d
bigBedSummaryArray	lib/bigBed.c	/^boolean bigBedSummaryArray(struct bbiFile *bbi, char *chrom, bits32 start, bits32 end,$/;"	f
bigBedSummaryArrayExtended	lib/bigBed.c	/^boolean bigBedSummaryArrayExtended(struct bbiFile *bbi, char *chrom, bits32 start, bits32 end,$/;"	f
bigBuffer	hg/lib/mafGene.c	/^static char bigBuffer[100 * 1024];$/;"	v	file:
bigInsert	hg/inc/chromInserts.h	/^struct bigInsert$/;"	s
bigInsertBeforeContig	hg/lib/chromInserts.c	/^struct bigInsert *bigInsertBeforeContig(struct chromInserts *chromInserts, $/;"	f
bigWigBlockDumpIntersectingRange	lib/bwgQuery.c	/^static int bigWigBlockDumpIntersectingRange(boolean isSwapped, char *blockPt, char *blockEnd, $/;"	f	file:
bigWigFactory	hg/lib/customFactory.c	/^static struct customFactory bigWigFactory =$/;"	v	typeref:struct:customFactory	file:
bigWigFileCheckSigs	lib/bwgQuery.c	/^boolean bigWigFileCheckSigs(char *fileName)$/;"	f
bigWigFileClose	inc/bigWig.h	44;"	d
bigWigFileCreate	lib/bwgCreate.c	/^void bigWigFileCreate($/;"	f
bigWigFileOpen	lib/bwgQuery.c	/^struct bbiFile *bigWigFileOpen(char *fileName)$/;"	f
bigWigIntervalDump	lib/bwgQuery.c	/^int bigWigIntervalDump(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end, int maxCount,$/;"	f
bigWigIntervalQuery	lib/bwgQuery.c	/^struct bbiInterval *bigWigIntervalQuery(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end,$/;"	f
bigWigLoader	hg/lib/customFactory.c	/^static struct customTrack *bigWigLoader(struct customFactory *fac,$/;"	f	file:
bigWigRecognizer	hg/lib/customFactory.c	/^static boolean bigWigRecognizer(struct customFactory *fac,$/;"	f	file:
bigWigSig	inc/sig.h	90;"	d
bigWigSingleSummary	lib/bwgQuery.c	/^double bigWigSingleSummary(struct bbiFile *bwf, char *chrom, int start, int end,$/;"	f
bigWigSummaryArray	lib/bwgQuery.c	/^boolean bigWigSummaryArray(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end,$/;"	f
bigWigSummaryArrayExtended	lib/bwgQuery.c	/^boolean bigWigSummaryArrayExtended(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end,$/;"	f
bigWigValsOnChrom	inc/bigWig.h	/^struct bigWigValsOnChrom$/;"	s
bigWigValsOnChromFetchData	lib/bwgValsOnChrom.c	/^boolean bigWigValsOnChromFetchData(struct bigWigValsOnChrom *chromVals, char *chrom, $/;"	f
bigWigValsOnChromFree	lib/bwgValsOnChrom.c	/^void bigWigValsOnChromFree(struct bigWigValsOnChrom **pChromVals)$/;"	f
bigWigValsOnChromNew	lib/bwgValsOnChrom.c	/^struct bigWigValsOnChrom *bigWigValsOnChromNew()$/;"	f
bin	hg/inc/codeBlast.h	/^    short bin;	\/* bin for browser speed up *\/$/;"	m	struct:codeBlast
bin	hg/inc/fosEndPairs.h	/^    short bin;	\/* Bin number for browser speedup *\/$/;"	m	struct:fosEndPairs
bin	hg/inc/gv.h	/^    unsigned short bin; \/* A field to speed indexing *\/$/;"	m	struct:gvPos
bin	hg/inc/landmark.h	/^    unsigned short bin; \/* A field to speed indexing *\/$/;"	m	struct:landmark
bin	hg/inc/lfs.h	/^    short bin;	\/* Bin number for browser speedup *\/$/;"	m	struct:lfs
bin	hg/inc/makeItemsItem.h	/^    unsigned bin;	\/* Bin for range index *\/$/;"	m	struct:makeItemsItem
bin	hg/inc/ncRna.h	/^    short bin;	\/* bin for browser speed up *\/$/;"	m	struct:ncRna
bin	hg/inc/omicia.h	/^    unsigned short bin;	\/* A field to speed indexing *\/$/;"	m	struct:omiciaAuto
bin	hg/inc/omicia.h	/^    unsigned short bin;	\/* A field to speed indexing *\/$/;"	m	struct:omiciaHand
bin	hg/inc/oreganno.h	/^    unsigned short bin; \/* A field to speed indexing *\/$/;"	m	struct:oreganno
bin	hg/inc/oregannoOther.h	/^    unsigned short bin;	\/* A field to speed indexing *\/$/;"	m	struct:oregannoOther
bin	hg/inc/pgSnp.h	/^    unsigned short bin; \/* A field to speed indexing *\/$/;"	m	struct:pgSnp
bin	hg/inc/plasEndPairs.h	/^    short bin;	\/* Bin number for browser speedup *\/$/;"	m	struct:plasEndPairs
bin	hg/inc/protVar.h	/^    unsigned short bin; \/* A field to speed indexing *\/$/;"	m	struct:protVarPos
bin	hg/inc/rgdQtl.h	/^    short bin;	\/* bin for browser speed up *\/$/;"	m	struct:rgdQtl
bin	hg/inc/tigrCmrGene.h	/^    short bin;	\/* Bin number for browser speedup *\/$/;"	m	struct:tigrCmrGene
bin	hg/inc/variome.h	/^    unsigned short bin;	\/* used for efficient position indexing *\/$/;"	m	struct:variome
bin	hg/inc/wgRna.h	/^    short bin;	\/* Bin number for browser speedup *\/$/;"	m	struct:wgRna
bin	hg/inc/wikiTrack.h	/^    unsigned short bin;	\/* used for efficient position indexing *\/$/;"	m	struct:wikiTrack
binCount	inc/binRange.h	/^    int binCount;	\/* Count of bins. *\/$/;"	m	struct:binKeeper
binCount	inc/histogram.h	/^    unsigned binCount;		\/*	number of bins	*\/$/;"	m	struct:histoResult
binCounts	inc/histogram.h	/^    unsigned *binCounts;	\/*	array binCounts[binCount]	*\/$/;"	m	struct:histoResult
binElement	inc/binRange.h	/^struct binElement$/;"	s
binElementCmpStart	lib/binRange.c	/^int binElementCmpStart(const void *va, const void *vb)$/;"	f
binFieldSql	hg/lib/genePred.c	/^static char *binFieldSql = $/;"	v	file:
binFirstShift	lib/binRange.c	/^int binFirstShift()$/;"	f
binFromRange	lib/binRange.c	/^int binFromRange(int start, int end)$/;"	f
binFromRangeBinKeeperExtended	lib/binRange.c	/^static int binFromRangeBinKeeperExtended(int start, int end)$/;"	f	file:
binFromRangeExtended	lib/binRange.c	/^static int binFromRangeExtended(int start, int end)$/;"	f	file:
binFromRangeStandard	lib/binRange.c	/^static int binFromRangeStandard(int start, int end)$/;"	f	file:
binKeeper	inc/binRange.h	/^struct binKeeper$/;"	s
binKeeperAdd	lib/binRange.c	/^void binKeeperAdd(struct binKeeper *bk, int start, int end, void *val)$/;"	f
binKeeperAnyOverlap	lib/binRange.c	/^boolean binKeeperAnyOverlap(struct binKeeper *bk, int start, int end)$/;"	f
binKeeperCookie	inc/binRange.h	/^struct binKeeperCookie$/;"	s
binKeeperFind	lib/binRange.c	/^struct binElement *binKeeperFind(struct binKeeper *bk, int start, int end)$/;"	f
binKeeperFindAll	lib/binRange.c	/^struct binElement *binKeeperFindAll(struct binKeeper *bk)$/;"	f
binKeeperFindLowest	lib/binRange.c	/^struct binElement *binKeeperFindLowest(struct binKeeper *bk, int start, int end)$/;"	f
binKeeperFindSorted	lib/binRange.c	/^struct binElement *binKeeperFindSorted(struct binKeeper *bk, int start, int end)$/;"	f
binKeeperFirst	lib/binRange.c	/^struct binKeeperCookie binKeeperFirst(struct binKeeper *bk)$/;"	f
binKeeperFree	lib/binRange.c	/^void binKeeperFree(struct binKeeper **pBk)$/;"	f
binKeeperNew	lib/binRange.c	/^struct binKeeper *binKeeperNew(int minPos, int maxPos)$/;"	f
binKeeperNext	lib/binRange.c	/^struct binElement* binKeeperNext(struct binKeeperCookie *cookie)$/;"	f
binKeeperRemove	lib/binRange.c	/^void binKeeperRemove(struct binKeeper *bk, int start, int end, void *val)$/;"	f
binKeeperReplaceVal	lib/binRange.c	/^void binKeeperReplaceVal(struct binKeeper *bk, int start, int end,$/;"	f
binLevels	lib/binRange.c	/^int binLevels()$/;"	f
binLevelsExtended	lib/binRange.c	/^int binLevelsExtended()$/;"	f
binLists	inc/binRange.h	/^    struct binElement **binLists; \/* A list for each bin. *\/$/;"	m	struct:binKeeper	typeref:struct:binKeeper::binElement
binNextShift	lib/binRange.c	/^int binNextShift()$/;"	f
binOffset	lib/binRange.c	/^int binOffset(int level)$/;"	f
binOffsetExtended	lib/binRange.c	/^int binOffsetExtended(int level)$/;"	f
binOffsets	lib/binRange.c	/^static int binOffsets[] = {512+64+8+1, 64+8+1, 8+1, 1, 0};$/;"	v	file:
binOffsetsExtended	lib/binRange.c	/^static int binOffsetsExtended[] =$/;"	v	file:
binSize	inc/histogram.h	/^    float binSize;		\/*	size of a bin	*\/$/;"	m	struct:histoResult
binZero	inc/histogram.h	/^    float binZero;		\/*	bin 0 starts at this value	*\/$/;"	m	struct:histoResult
binary	inc/mime.h	/^    boolean binary; \/* if contains 0 chars, cannot store as a c-string *\/$/;"	m	struct:mimePart
binaryFile	hg/inc/metaChromGraph.h	/^    char *binaryFile;	\/* Location of binary data point file if any *\/$/;"	m	struct:metaChromGraph
bincount	hg/lib/wigAsciiToBinary.c	/^static unsigned long long bincount = 0;	\/* to count binsize for wig file *\/$/;"	v	file:
bindVals	hg/inc/transRegCodeProbe.h	/^    float *bindVals;	\/* E values for factor binding (lower is better) *\/$/;"	m	struct:transRegCodeProbe
binout	hg/lib/wigAsciiToBinary.c	/^static FILE *binout = (FILE *)NULL;	\/* file handle for binary data file *\/$/;"	v	file:
binsize	hg/lib/wigAsciiToBinary.c	/^static long long binsize = 1024;	\/* # of data points per table row *\/$/;"	v	file:
bioImageAccession	hg/lib/bioImage.c	/^char *bioImageAccession(struct sqlConnection *conn, int id)$/;"	f
bioImageBodyPart	hg/lib/bioImage.c	/^char *bioImageBodyPart(struct sqlConnection *conn, int id)$/;"	f
bioImageContributors	hg/lib/bioImage.c	/^char *bioImageContributors(struct sqlConnection *conn, int id)$/;"	f
bioImageFullSizePath	hg/lib/bioImage.c	/^char *bioImageFullSizePath(struct sqlConnection *conn, int id)$/;"	f
bioImageGeneName	hg/lib/bioImage.c	/^char *bioImageGeneName(struct sqlConnection *conn, int id)$/;"	f
bioImageItemUrl	hg/lib/bioImage.c	/^char *bioImageItemUrl(struct sqlConnection *conn, int id)$/;"	f
bioImageOnSameGene	hg/lib/bioImage.c	/^struct slInt *bioImageOnSameGene(struct sqlConnection *conn, int id)$/;"	f
bioImageOrganism	hg/lib/bioImage.c	/^char *bioImageOrganism(struct sqlConnection *conn, int id)$/;"	f
bioImagePubUrl	hg/lib/bioImage.c	/^char *bioImagePubUrl(struct sqlConnection *conn, int id)$/;"	f
bioImagePublication	hg/lib/bioImage.c	/^char *bioImagePublication(struct sqlConnection *conn, int id)$/;"	f
bioImageScreenSizePath	hg/lib/bioImage.c	/^char *bioImageScreenSizePath(struct sqlConnection *conn, int id)$/;"	f
bioImageSetUrl	hg/lib/bioImage.c	/^char *bioImageSetUrl(struct sqlConnection *conn, int id)$/;"	f
bioImageSliceType	hg/lib/bioImage.c	/^char *bioImageSliceType(struct sqlConnection *conn, int id)$/;"	f
bioImageStage	hg/lib/bioImage.c	/^char *bioImageStage(struct sqlConnection *conn, int id, boolean doLong)$/;"	f
bioImageSubmitId	hg/lib/bioImage.c	/^char *bioImageSubmitId(struct sqlConnection *conn, int id)$/;"	f
bioImageThumbSizePath	hg/lib/bioImage.c	/^char *bioImageThumbSizePath(struct sqlConnection *conn, int id)$/;"	f
bioImageTreatment	hg/lib/bioImage.c	/^char *bioImageTreatment(struct sqlConnection *conn, int id)$/;"	f
bioImageType	hg/lib/bioImage.c	/^char *bioImageType(struct sqlConnection *conn, int id)$/;"	f
bioScoreMatch	jkOwnLib/supStitch.c	/^static int bioScoreMatch(boolean isProt, char *a, char *b, int size)$/;"	f	file:
bioSeq	inc/dnaseq.h	/^typedef struct dnaSeq bioSeq;	\/* Preferred use if either DNA or protein. *\/$/;"	t	typeref:struct:dnaSeq
bitAlloc	lib/bits.c	/^Bits *bitAlloc(int bitCount)$/;"	f
bitAnd	lib/bits.c	/^void bitAnd(Bits *a, Bits *b, int bitCount)$/;"	f
bitClear	lib/bits.c	/^void bitClear(Bits *b, int bitCount)$/;"	f
bitClearOne	lib/bits.c	/^void bitClearOne(Bits *b, int bitIx)$/;"	f
bitClearRange	lib/bits.c	/^void bitClearRange(Bits *b, int startIx, int bitCount)$/;"	f
bitClone	lib/bits.c	/^Bits *bitClone(Bits* orig, int bitCount)$/;"	f
bitCountRange	lib/bits.c	/^int bitCountRange(Bits *b, int startIx, int bitCount)$/;"	f
bitFind	lib/bits.c	/^int bitFind(Bits *b, int startIx, boolean val, int bitCount)$/;"	f
bitFindClear	lib/bits.c	/^int bitFindClear(Bits *b, int startIx, int bitCount)$/;"	f
bitFindSet	lib/bits.c	/^int bitFindSet(Bits *b, int startIx, int bitCount)$/;"	f
bitFree	lib/bits.c	/^void bitFree(Bits **pB)$/;"	f
bitNot	lib/bits.c	/^void bitNot(Bits *a, int bitCount)$/;"	f
bitOr	lib/bits.c	/^void bitOr(Bits *a, Bits *b, int bitCount)$/;"	f
bitPrint	lib/bits.c	/^void bitPrint(Bits *a, int startIx, int bitCount, FILE* out)$/;"	f
bitReadOne	lib/bits.c	/^boolean bitReadOne(Bits *b, int bitIx)$/;"	f
bitRealDataSize	lib/udc.c	/^static long bitRealDataSize(char *fileName)$/;"	f	file:
bitRealloc	lib/bits.c	/^Bits *bitRealloc(Bits *b, int bitCount, int newBitCount)$/;"	f
bitScore	hg/inc/blastTab.h	/^    double bitScore;	\/* Bit score *\/$/;"	m	struct:blastTab
bitScore	inc/blastParse.h	/^    double bitScore;                    \/* About 2 bits per aligning nucleotide. *\/$/;"	m	struct:blastBlock
bitSetOne	lib/bits.c	/^void bitSetOne(Bits *b, int bitIx)$/;"	f
bitSetRange	lib/bits.c	/^void bitSetRange(Bits *b, int startIx, int bitCount)$/;"	f
bitToByteSize	inc/bits.h	11;"	d
bitXor	lib/bits.c	/^void bitXor(Bits *a, Bits *b, int bitCount)$/;"	f
bit_offset	lib/gifcomp.c	/^static short bit_offset;$/;"	v	file:
bitfields	hg/inc/snp132Ext.h	/^    char *bitfields;	\/* SNP attributes extracted from dbSNP's SNP_bitfield table *\/$/;"	m	struct:snp132Ext
bitmapFileName	lib/udc.c	/^    char *bitmapFileName;	\/* Name of bitmap file. *\/$/;"	m	struct:udcFile	file:
bitmapName	lib/udc.c	/^static char *bitmapName = "bitmap";$/;"	v	file:
bitmapVersion	lib/udc.c	/^    bits32 bitmapVersion;	\/* Version of associated bitmap we were opened with. *\/$/;"	m	struct:udcFile	file:
bits	lib/udc.c	/^    struct udcBitmap *bits;     \/* udcBitMap *\/$/;"	m	struct:udcFile	typeref:struct:udcFile::udcBitmap	file:
bits16	inc/common.h	112;"	d
bits32	inc/common.h	111;"	d
bits32PaddedSize	lib/nt4.c	/^static size_t bits32PaddedSize(size_t size)$/;"	f	file:
bits64	inc/common.h	110;"	d
bits8	inc/common.h	113;"	d
bits8	inc/common.h	115;"	d
bitsClear	hg/lib/altGraphX.c	/^static boolean bitsClear(struct spaceSaver *ss, struct spliceEdge *eg, int currentPos, double scale)$/;"	f	file:
bitsInByte	lib/bits.c	/^int bitsInByte[256];$/;"	v
bitsInByteInit	lib/bits.c	/^void bitsInByteInit()$/;"	f
bitsToBed	hg/lib/featureBits.c	/^void bitsToBed(char *db, Bits *bits, char *chrom, int chromSize, FILE *bed, FILE *fa, $/;"	f
bk	hg/lib/liftOver.c	/^    struct binKeeper *bk;       \/* Keyed by old position, values are chains. *\/$/;"	m	struct:chromMap	typeref:struct:chromMap::binKeeper	file:
bk	inc/binRange.h	/^    struct binKeeper *bk;       \/* binKeeper we are associated with *\/$/;"	m	struct:binKeeperCookie	typeref:struct:binKeeperCookie::binKeeper
blIdx	inc/binRange.h	/^    int blIdx;                  \/* current bin list index *\/$/;"	m	struct:binKeeperCookie
blackListRange	hg/inc/genbankBlackList.h	/^struct blackListRange  \/* a range of extensions with a common prefix *\/$/;"	s
blankIfNull	hg/lib/annoGratorGpVar.c	/^static char *blankIfNull(char *input)$/;"	f	file:
blastAnnot	hg/inc/chicken13kInfo.h	/^    char *blastAnnot;	\/* BLAST determined annotation *\/$/;"	m	struct:chicken13kInfo
blastBlock	inc/blastParse.h	/^struct blastBlock$/;"	s
blastBlockFree	lib/blastParse.c	/^void blastBlockFree(struct blastBlock **pBb)$/;"	f
blastBlockFreeList	lib/blastParse.c	/^void blastBlockFreeList(struct blastBlock **pList)$/;"	f
blastBlockPrint	lib/blastParse.c	/^void blastBlockPrint(struct blastBlock* bb, FILE* out)$/;"	f
blastFile	inc/blastParse.h	/^struct blastFile$/;"	s
blastFileFree	lib/blastParse.c	/^void blastFileFree(struct blastFile **pBf)$/;"	f
blastFileFreeList	lib/blastParse.c	/^void blastFileFreeList(struct blastFile **pList)$/;"	f
blastFileNextBlock	lib/blastParse.c	/^struct blastBlock *blastFileNextBlock(struct blastFile *bf, $/;"	f
blastFileNextGapped	lib/blastParse.c	/^struct blastGappedAli *blastFileNextGapped(struct blastFile *bf, struct blastQuery *bq)$/;"	f
blastFileNextQuery	lib/blastParse.c	/^struct blastQuery *blastFileNextQuery(struct blastFile *bf)$/;"	f
blastFileOpenVerify	lib/blastParse.c	/^struct blastFile *blastFileOpenVerify(char *fileName)$/;"	f
blastFileReadAll	lib/blastParse.c	/^struct blastFile *blastFileReadAll(char *fileName)$/;"	f
blastGappedAli	inc/blastParse.h	/^struct blastGappedAli$/;"	s
blastGappedAliFree	lib/blastParse.c	/^void blastGappedAliFree(struct blastGappedAli **pBga)$/;"	f
blastGappedAliFreeList	lib/blastParse.c	/^void blastGappedAliFreeList(struct blastGappedAli **pList)$/;"	f
blastGappedAliPrint	lib/blastParse.c	/^void blastGappedAliPrint(struct blastGappedAli* ba, FILE* out)$/;"	f
blastQuery	inc/blastParse.h	/^struct blastQuery$/;"	s
blastQueryFree	lib/blastParse.c	/^void blastQueryFree(struct blastQuery **pBq)$/;"	f
blastQueryFreeList	lib/blastParse.c	/^void blastQueryFreeList(struct blastQuery **pList)$/;"	f
blastQueryOut	jkOwnLib/gfOut.c	/^static void blastQueryOut(struct gfOutput *out, FILE *f)$/;"	f	file:
blastQueryPrint	lib/blastParse.c	/^void blastQueryPrint(struct blastQuery *bq, FILE* out)$/;"	f
blastTab	hg/inc/blastTab.h	/^struct blastTab$/;"	s
blastTabCommaIn	hg/lib/blastTab.c	/^struct blastTab *blastTabCommaIn(char **pS, struct blastTab *ret)$/;"	f
blastTabCommaOut	hg/inc/blastTab.h	61;"	d
blastTabFree	hg/lib/blastTab.c	/^void blastTabFree(struct blastTab **pEl)$/;"	f
blastTabFreeList	hg/lib/blastTab.c	/^void blastTabFreeList(struct blastTab **pList)$/;"	f
blastTabLoad	hg/lib/blastTab.c	/^struct blastTab *blastTabLoad(char **row)$/;"	f
blastTabLoadAll	hg/lib/blastTab.c	/^struct blastTab *blastTabLoadAll(char *fileName) $/;"	f
blastTabNext	hg/lib/blastTab.c	/^struct blastTab *blastTabNext(struct lineFile *lf) $/;"	f
blastTabOutput	hg/lib/blastTab.c	/^void blastTabOutput(struct blastTab *el, FILE *f, char sep, char lastSep) $/;"	f
blastTabStaticLoad	hg/lib/blastTab.c	/^void blastTabStaticLoad(char **row, struct blastTab *ret)$/;"	f
blastTabTabOut	hg/inc/blastTab.h	58;"	d
blastType	jkOwnLib/gfOut.c	/^    char *blastType;	\/* 'blast' or 'wublast' or 'xml' or 'blast8' or 'blast9' *\/$/;"	m	struct:axtData	file:
blast_hlines	lib/mgPolygon.c	/^static void blast_hlines(struct memGfx *mg, $/;"	f	file:
blastiodAxtOutput	lib/blastOut.c	/^static void blastiodAxtOutput(FILE *f, struct axt *axt, int tSize, int qSize, $/;"	f	file:
blastzNet	hg/inc/blastzNet.h	/^struct blastzNet$/;"	s
blastzNetCommaIn	hg/lib/blastzNet.c	/^struct blastzNet *blastzNetCommaIn(char **pS, struct blastzNet *ret)$/;"	f
blastzNetCommaOut	hg/inc/blastzNet.h	57;"	d
blastzNetFree	hg/lib/blastzNet.c	/^void blastzNetFree(struct blastzNet **pEl)$/;"	f
blastzNetFreeList	hg/lib/blastzNet.c	/^void blastzNetFreeList(struct blastzNet **pList)$/;"	f
blastzNetLoad	hg/lib/blastzNet.c	/^struct blastzNet *blastzNetLoad(char **row)$/;"	f
blastzNetLoadAll	hg/lib/blastzNet.c	/^struct blastzNet *blastzNetLoadAll(char *fileName) $/;"	f
blastzNetLoadWhere	hg/lib/blastzNet.c	/^struct blastzNet *blastzNetLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
blastzNetOutput	hg/lib/blastzNet.c	/^void blastzNetOutput(struct blastzNet *el, FILE *f, char sep, char lastSep) $/;"	f
blastzNetStaticLoad	hg/lib/blastzNet.c	/^void blastzNetStaticLoad(char **row, struct blastzNet *ret)$/;"	f
blastzNetTabOut	hg/inc/blastzNet.h	54;"	d
blastzScoreToNcbiBits	lib/blastOut.c	/^static int blastzScoreToNcbiBits(int bzScore)$/;"	f	file:
blastzScoreToNcbiExpectation	lib/blastOut.c	/^static double blastzScoreToNcbiExpectation(int bzScore)$/;"	f	file:
blastzScoreToNcbiScore	lib/blastOut.c	/^static int blastzScoreToNcbiScore(int bzScore)$/;"	f	file:
blastzScoreToWuBits	lib/blastOut.c	/^static double blastzScoreToWuBits(int bzScore, boolean isProt)$/;"	f	file:
blastzScoreToWuExpectation	lib/blastOut.c	/^static double blastzScoreToWuExpectation(int bzScore, double databaseSize)$/;"	f	file:
blastzToWublastScore	lib/blastOut.c	/^static int blastzToWublastScore(int bzScore)$/;"	f	file:
blat	hg/inc/chicken13kInfo.h	/^    char *blat;	\/* BLAT alignments *\/$/;"	m	struct:chicken13kInfo
blatScore	hg/inc/dnaProbe.h	/^    int blatScore;	\/* blat score of the second greatest region of homology *\/$/;"	m	struct:dnaProbe
blatServerTable	hg/inc/hdb.h	/^struct blatServerTable$/;"	s
blatServers	hg/inc/blatServers.h	/^struct blatServers$/;"	s
blatServersCommaIn	hg/lib/blatServers.c	/^struct blatServers *blatServersCommaIn(char **pS, struct blatServers *ret)$/;"	f
blatServersCommaOut	hg/inc/blatServers.h	53;"	d
blatServersFree	hg/lib/blatServers.c	/^void blatServersFree(struct blatServers **pEl)$/;"	f
blatServersFreeList	hg/lib/blatServers.c	/^void blatServersFreeList(struct blatServers **pList)$/;"	f
blatServersLoad	hg/lib/blatServers.c	/^struct blatServers *blatServersLoad(char **row)$/;"	f
blatServersLoadAll	hg/lib/blatServers.c	/^struct blatServers *blatServersLoadAll(char *fileName) $/;"	f
blatServersLoadWhere	hg/lib/blatServers.c	/^struct blatServers *blatServersLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
blatServersOutput	hg/lib/blatServers.c	/^void blatServersOutput(struct blatServers *el, FILE *f, char sep, char lastSep) $/;"	f
blatServersStaticLoad	hg/lib/blatServers.c	/^void blatServersStaticLoad(char **row, struct blatServers *ret)$/;"	f
blatServersTabOut	hg/inc/blatServers.h	50;"	d
bleedIntoIntron	hg/inc/txInfo.h	/^    int bleedIntoIntron;	\/* If nonzero number of bases start or end of tx bleeds into intron *\/$/;"	m	struct:txInfo
blen	inc/mime.h	/^    int  blen;              \/* boundary pattern length (strlen) *\/$/;"	m	struct:mimeBuf
block	lib/pslTransMap.c	/^struct block$/;"	s	file:
blockCount	hg/inc/bed12Source.h	/^    int blockCount;	\/* Number of blocks *\/$/;"	m	struct:bed12Source
blockCount	hg/inc/bed12wSeq.h	/^    int blockCount;	\/* Number of blocks *\/$/;"	m	struct:bed12wSeq
blockCount	hg/inc/bedDetail.h	/^    int blockCount;	\/* Number of blocks *\/$/;"	m	struct:bedDetail
blockCount	hg/inc/ggMrnaAli.h	/^    short blockCount;	\/* Number of blocks.  *\/$/;"	m	struct:ggMrnaAli
blockCount	hg/inc/mammalPsg.h	/^    int blockCount;	\/* Number of blocks *\/$/;"	m	struct:mammalPsg
blockCount	hg/inc/pseudoGeneLink.h	/^    int blockCount;	\/* Number of blocks *\/$/;"	m	struct:pseudoGeneLink
blockCount	hg/inc/pslWQueryID.h	/^    unsigned blockCount;	\/* Number of blocks in alignment *\/$/;"	m	struct:pslWQueryID
blockCount	hg/inc/pslWScore.h	/^    unsigned blockCount;	\/* Number of blocks in alignment *\/$/;"	m	struct:pslWScore
blockCount	hg/inc/putaInfo.h	/^    unsigned blockCount;	\/* total stamper blocks *\/$/;"	m	struct:putaInfo
blockCount	hg/inc/retroMrnaInfo.h	/^    int blockCount;	\/* Number of blocks *\/$/;"	m	struct:retroMrnaInfo
blockCount	hg/inc/ucscRetroInfo.h	/^    int blockCount;	\/* Number of blocks *\/$/;"	m	struct:ucscRetroInfo
blockCount	hg/inc/zdobnovSynt.h	/^    int blockCount;	\/* Number of blocks (syntenic genes) *\/$/;"	m	struct:zdobnovSynt
blockCount	inc/basicBed.h	/^    unsigned blockCount; \/* Number of blocks. *\/$/;"	m	struct:bed
blockCount	inc/cda.h	/^    short blockCount;               \/* Number of blocks. *\/$/;"	m	struct:cdaAli
blockCount	inc/maDbRep.h	/^    unsigned blockCount;	\/* Number of aligned blocks *\/$/;"	m	struct:mrnaAli
blockCount	inc/psl.h	/^    unsigned blockCount;	\/* Number of blocks in alignment *\/$/;"	m	struct:psl
blockCount	inc/xAli.h	/^    unsigned blockCount;	\/* Number of blocks in alignment *\/$/;"	m	struct:xAli
blockCountFilter	hg/inc/bed.h	/^    enum numericFilterType blockCountFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
blockCountVals	hg/inc/bed.h	/^    int *blockCountVals;$/;"	m	struct:bedFilter
blockFromPslBlock	lib/pslTransMap.c	/^static struct block blockFromPslBlock(struct psl* psl, int iBlock)$/;"	f	file:
blockList	hg/inc/chainView.h	/^    struct boxIn *blockList;      \/* List of blocks. *\/$/;"	m	struct:chainView	typeref:struct:chainView::boxIn
blockList	inc/chain.h	/^    struct cBlock *blockList;      \/* List of blocks. *\/$/;"	m	struct:chain	typeref:struct:chain::cBlock
blockPos	jkOwnLib/patSpace.c	/^    struct blockPos blockPos[maxBlockCount]; \/* Relates block to sequence. *\/$/;"	m	struct:patSpace	typeref:struct:patSpace::blockPos	file:
blockPos	jkOwnLib/patSpace.c	/^struct blockPos$/;"	s	file:
blockSize	inc/bPlusTree.h	/^    bits32 blockSize;		\/* Size of block. *\/$/;"	m	struct:bptFile
blockSize	inc/cirTree.h	/^    bits32 blockSize;		\/* Size of block. *\/$/;"	m	struct:cirTreeFile
blockSize	jkOwnLib/patSpace.c	11;"	d	file:
blockSize	lib/gifwrite.c	/^    unsigned char extensionIntroducer, graphicControlLabel, blockSize;$/;"	m	struct:gif_gce	file:
blockSize	lib/localmem.c	/^    size_t blockSize;$/;"	m	struct:lm	file:
blockSize	lib/udc.c	/^    bits32 blockSize;		\/* Number of bytes per block of file. *\/$/;"	m	struct:udcBitmap	file:
blockSizes	hg/inc/bed12Source.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:bed12Source
blockSizes	hg/inc/bed12wSeq.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:bed12wSeq
blockSizes	hg/inc/bedDetail.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:bedDetail
blockSizes	hg/inc/mammalPsg.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:mammalPsg
blockSizes	hg/inc/pseudoGeneLink.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:pseudoGeneLink
blockSizes	hg/inc/pslWQueryID.h	/^    unsigned *blockSizes;	\/* Size of each block *\/$/;"	m	struct:pslWQueryID
blockSizes	hg/inc/pslWScore.h	/^    unsigned *blockSizes;	\/* Size of each block *\/$/;"	m	struct:pslWScore
blockSizes	hg/inc/retroMrnaInfo.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:retroMrnaInfo
blockSizes	hg/inc/ucscRetroInfo.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:ucscRetroInfo
blockSizes	hg/inc/zdobnovSynt.h	/^    int *blockSizes;	\/* Comma separated list of block sizes *\/$/;"	m	struct:zdobnovSynt
blockSizes	inc/basicBed.h	/^    int *blockSizes;     \/* Comma separated list of block sizes.  *\/$/;"	m	struct:bed
blockSizes	inc/maDbRep.h	/^    unsigned *blockSizes;	\/* Size of each block *\/$/;"	m	struct:mrnaAli
blockSizes	inc/psl.h	/^    unsigned *blockSizes;	\/* Size of each block *\/$/;"	m	struct:psl
blockSizes	inc/xAli.h	/^    unsigned *blockSizes;	\/* Size of each block *\/$/;"	m	struct:xAli
blockString	hg/inc/softPromoter.h	/^    char *blockString;	\/* From original file.  I'm not sure how to interpret. *\/$/;"	m	struct:softPromoter
blockTerminator	lib/gifwrite.c	/^    unsigned char blockTerminator;$/;"	m	struct:gif_gce	file:
blocks	hg/inc/ggMrnaAli.h	/^    struct ggMrnaBlock *blocks;	\/* Dynamically allocated array.  *\/$/;"	m	struct:ggMrnaAli	typeref:struct:ggMrnaAli::ggMrnaBlock
blocks	inc/blastParse.h	/^    struct blastBlock *blocks;          \/* List of aligning blocks (no big gaps). *\/$/;"	m	struct:blastGappedAli	typeref:struct:blastGappedAli::blastBlock
blocks	inc/cda.h	/^    struct cdaBlock *blocks;        \/* Dynamically allocated array. *\/$/;"	m	struct:cdaAli	typeref:struct:cdaAli::cdaBlock
blocks	inc/seg.h	/^	struct segBlock *blocks;	\/* Possibly empty list of segment blocks. *\/$/;"	m	struct:segFile	typeref:struct:segFile::segBlock
blocks	lib/localmem.c	/^    struct lmBlock *blocks;$/;"	m	struct:lm	typeref:struct:lm::lmBlock	file:
blocksOverlap	hg/lib/ggGraph.c	/^int blocksOverlap(struct ggMrnaBlock *block1, struct ggMrnaBlock *block2)$/;"	f
blocksUsed	jkOwnLib/patSpace.c	/^    int    blocksUsed;			 \/* Number of blocks used, <= maxBlockCount *\/$/;"	m	struct:patSpace	file:
blosumText	lib/axt.c	/^char blosumText[] = {$/;"	v
bodyNesters	lib/htmlPage.c	/^static char *bodyNesters[] = $/;"	v	file:
bodyPartCount	hg/inc/bdgpExprLink.h	/^    int bodyPartCount;	\/* Number of body parts *\/$/;"	m	struct:bdgpExprLink
bogusMacEmptyChars	hg/lib/customTrack.c	/^boolean bogusMacEmptyChars(char *s)$/;"	f
bold	inc/seqOut.h	/^    bool bold;		\/* Font in bold. *\/$/;"	m	struct:cfm
bool	inc/common.h	101;"	d
boolean	inc/common.h	98;"	d
booleanCastOp	lib/rqlParse.c	/^static enum rqlOp booleanCastOp(enum rqlType oldType)$/;"	f	file:
borf	hg/inc/borf.h	/^struct borf$/;"	s
borfCommaIn	hg/lib/borf.c	/^struct borf *borfCommaIn(char **pS, struct borf *ret)$/;"	f
borfCommaOut	hg/inc/borf.h	71;"	d
borfFree	hg/lib/borf.c	/^void borfFree(struct borf **pEl)$/;"	f
borfFreeList	hg/lib/borf.c	/^void borfFreeList(struct borf **pList)$/;"	f
borfFromBestorfOutput	hg/lib/borf.c	/^struct borf *borfFromBestorfOutput(char *fileName)$/;"	f
borfFromGenomeBed	hg/lib/borf.c	/^struct borf *borfFromGenomeBed(char *db, struct bed *bed)$/;"	f
borfLoad	hg/lib/borf.c	/^struct borf *borfLoad(char **row)$/;"	f
borfLoadAll	hg/lib/borf.c	/^struct borf *borfLoadAll(char *fileName) $/;"	f
borfLoadWhere	hg/lib/borf.c	/^struct borf *borfLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
borfMustFindLine	hg/lib/borf.c	/^static char *borfMustFindLine(struct lineFile *lf, char *pat)$/;"	f	file:
borfOutput	hg/lib/borf.c	/^void borfOutput(struct borf *el, FILE *f, char sep, char lastSep) $/;"	f
borfSetExeAndParam	hg/lib/borf.c	/^void borfSetExeAndParam(char *exePath, char *paramPath)$/;"	f
borfStaticLoad	hg/lib/borf.c	/^void borfStaticLoad(char **row, struct borf *ret)$/;"	f
borfTabOut	hg/inc/borf.h	68;"	d
borkPseudoHom	hg/inc/borkPseudoHom.h	/^struct borkPseudoHom$/;"	s
borkPseudoHomCommaIn	hg/lib/borkPseudoHom.c	/^struct borkPseudoHom *borkPseudoHomCommaIn(char **pS, struct borkPseudoHom *ret)$/;"	f
borkPseudoHomCommaOut	hg/inc/borkPseudoHom.h	52;"	d
borkPseudoHomFree	hg/lib/borkPseudoHom.c	/^void borkPseudoHomFree(struct borkPseudoHom **pEl)$/;"	f
borkPseudoHomFreeList	hg/lib/borkPseudoHom.c	/^void borkPseudoHomFreeList(struct borkPseudoHom **pList)$/;"	f
borkPseudoHomLoad	hg/lib/borkPseudoHom.c	/^struct borkPseudoHom *borkPseudoHomLoad(char **row)$/;"	f
borkPseudoHomLoadAll	hg/lib/borkPseudoHom.c	/^struct borkPseudoHom *borkPseudoHomLoadAll(char *fileName) $/;"	f
borkPseudoHomLoadWhere	hg/lib/borkPseudoHom.c	/^struct borkPseudoHom *borkPseudoHomLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
borkPseudoHomOutput	hg/lib/borkPseudoHom.c	/^void borkPseudoHomOutput(struct borkPseudoHom *el, FILE *f, char sep, char lastSep) $/;"	f
borkPseudoHomStaticLoad	hg/lib/borkPseudoHom.c	/^void borkPseudoHomStaticLoad(char **row, struct borkPseudoHom *ret)$/;"	f
borkPseudoHomTabOut	hg/inc/borkPseudoHom.h	49;"	d
bot	hg/inc/stanMad.h	/^    int bot;	\/* The bottom coordinate of the spot. *\/$/;"	m	struct:stanMad
botDelayCgi	hg/lib/botDelay.c	/^void botDelayCgi(char *host, int port)$/;"	f
botDelayMessage	hg/lib/botDelay.c	/^void botDelayMessage(char *ip, int millis)$/;"	f
botDelayTime	hg/lib/botDelay.c	/^int botDelayTime(char *host, int port, char *botCheckString)$/;"	f
botTerminateMessage	hg/lib/botDelay.c	/^void botTerminateMessage(char *ip, int millis)$/;"	f
bot_dist	lib/gemfont.h	/^WORD	bot_dist;$/;"	m	struct:font_hdr
bottomList	hg/inc/genoLay.h	/^    struct slRef *bottomList;		\/* Sex chromosomes are on bottom. *\/$/;"	m	struct:genoLay	typeref:struct:genoLay::slRef
boundary	inc/mime.h	/^    char *boundary;         \/* boundary pattern for marking end of mime part *\/$/;"	m	struct:mimeBuf
bounded	hg/inc/affyAllExonProbe.h	/^    unsigned bounded;	\/* ??? Yes or No *\/$/;"	m	struct:affyAllExonProbe
box	inc/vGfx.h	/^    void (*box)(void *v, int x, int y, $/;"	m	struct:vGfx
box	lib/boxClump.c	/^    struct box *box;$/;"	m	struct:boxRef	typeref:struct:boxRef::box	file:
box	lib/boxClump.c	/^struct box$/;"	s	file:
boxClump	inc/boxClump.h	/^struct boxClump$/;"	s
boxClumpCmpCount	lib/boxClump.c	/^int boxClumpCmpCount(const void *va, const void *vb)$/;"	f
boxClumpFree	lib/boxClump.c	/^void boxClumpFree(struct boxClump **pClump)$/;"	f
boxClumpFreeList	lib/boxClump.c	/^void boxClumpFreeList(struct boxClump **pList)$/;"	f
boxCount	inc/boxClump.h	/^    int boxCount;		 \/* Count of boxes in this clump. *\/$/;"	m	struct:boxClump
boxFindClumps	lib/boxClump.c	/^struct boxClump *boxFindClumps(struct boxIn **pBoxList)$/;"	f
boxIn	inc/boxClump.h	/^struct boxIn$/;"	s
boxInCmpQuery	lib/boxLump.c	/^int boxInCmpQuery(const void *va, const void *vb)$/;"	f
boxInCmpTarget	lib/boxLump.c	/^int boxInCmpTarget(const void *va, const void *vb)$/;"	f
boxList	inc/boxClump.h	/^    struct boxIn *boxList;	 \/* List of boxes in this clump. *\/$/;"	m	struct:boxClump	typeref:struct:boxClump::boxIn
boxList	lib/boxClump.c	/^    struct box *boxList;	\/* List of boxes. *\/$/;"	m	struct:cluster	typeref:struct:cluster::box	file:
boxLump	lib/boxLump.c	/^struct boxClump *boxLump(struct boxIn **pBoxList)$/;"	f
boxPscm	lib/pscmGfx.c	/^static struct pscmGfx *boxPscm;	 \/* Used to keep from drawing the same box again$/;"	v	typeref:struct:pscmGfx	file:
boxRef	lib/boxClump.c	/^struct boxRef$/;"	s	file:
bpAlign	hg/inc/celeraDupPositive.h	/^    float bpAlign;	\/* K-value calculated with Jukes-Cantor *\/$/;"	m	struct:celeraDupPositive
bpId	hg/inc/mcnBreakpoints.h	/^    char *bpId;	\/* MCN Breakpoint ID *\/$/;"	m	struct:mcnBreakpoints
bpt	inc/twoBit.h	/^    struct bptFile *bpt;	\/* Alternative index. *\/$/;"	m	struct:twoBitFile	typeref:struct:twoBitFile::bptFile
bptBlockHeaderSize	inc/bPlusTree.h	112;"	d
bptCountLevels	lib/bPlusTree.c	/^static int bptCountLevels(int maxBlockSize, int itemCount)$/;"	f	file:
bptFile	inc/bPlusTree.h	/^struct bptFile$/;"	s
bptFileAttach	lib/bPlusTree.c	/^struct bptFile *bptFileAttach(char *fileName, struct udcFile *udc)$/;"	f
bptFileBulkIndexToOpenFile	lib/bPlusTree.c	/^void bptFileBulkIndexToOpenFile(void *itemArray, int itemSize, bits64 itemCount, bits32 blockSize,$/;"	f
bptFileClose	lib/bPlusTree.c	/^void bptFileClose(struct bptFile **pBpt)$/;"	f
bptFileCreate	lib/bPlusTree.c	/^void bptFileCreate($/;"	f
bptFileDetach	lib/bPlusTree.c	/^void bptFileDetach(struct bptFile **pBpt)$/;"	f
bptFileFind	lib/bPlusTree.c	/^boolean bptFileFind(struct bptFile *bpt, void *key, int keySize, void *val, int valSize)$/;"	f
bptFileHeaderSize	inc/bPlusTree.h	111;"	d
bptFileOpen	lib/bPlusTree.c	/^struct bptFile *bptFileOpen(char *fileName)$/;"	f
bptFileTraverse	lib/bPlusTree.c	/^void bptFileTraverse(struct bptFile *bpt, void *context,$/;"	f
bptSig	inc/sig.h	78;"	d
bptSwapped	inc/sig.h	81;"	d
branch	hg/inc/dless.h	/^    char *branch;	\/* Branch on which element was gained or lost *\/$/;"	m	struct:dless
bridge	hg/inc/agpGap.h	/^    char *bridge;	\/* yes, no, mrna, bacEndPair, etc. *\/$/;"	m	struct:agpGap
browserLength	inc/unfin.h	/^    int browserLength; \/* Size including padding. *\/$/;"	m	struct:contigTree
browserLinePosition	hg/lib/customFactory.c	/^static char *browserLinePosition(struct slName *browserLines)$/;"	f	file:
browserLines	hg/inc/customPp.h	/^    struct slName *browserLines; \/* Lines seen so far that start w\/ browser *\/$/;"	m	struct:customPp	typeref:struct:customPp::slName
browserLinesToSetting	hg/lib/customFactory.c	/^char *browserLinesToSetting(struct slName *browserLines)$/;"	f
browserName	hg/inc/hgFind.h	/^     char *browserName;		\/* name as in hgTracks tg->itemName(). *\/$/;"	m	struct:hgPos
browserOffset	inc/unfin.h	/^    int browserOffset; \/* Offset relative to parent for browser, ordered by ensemble, with$/;"	m	struct:contigTree
browserType	inc/cheapcgi.h	/^enum browserType$/;"	g
btChrome	inc/cheapcgi.h	/^    btChrome=4,  \/\/ Google Chrome$/;"	e	enum:browserType
btFF	inc/cheapcgi.h	/^    btFF=3,      \/\/ Firefox$/;"	e	enum:browserType
btIE	inc/cheapcgi.h	/^    btIE=2,      \/\/ MS Internet Explorer$/;"	e	enum:browserType
btOpera	inc/cheapcgi.h	/^    btOpera=1,   \/\/ Opera$/;"	e	enum:browserType
btOther	inc/cheapcgi.h	/^    btOther=6    \/\/ Anything else$/;"	e	enum:browserType
btSafari	inc/cheapcgi.h	/^    btSafari=5,  \/\/ Safari$/;"	e	enum:browserType
btUnknown	inc/cheapcgi.h	/^    btUnknown=0, \/\/ Not yet known$/;"	e	enum:browserType
bucketLen	lib/hash.c	/^static int bucketLen(struct hashEl *hel)$/;"	f	file:
buf	inc/apacheLog.h	/^    char *buf;		\/* All memory for apacheAccessLog fields is allocated at once here. *\/$/;"	m	struct:apacheAccessLog
buf	inc/linefile.h	/^    char *buf;			\/* Buffer. *\/$/;"	m	struct:lineFile
buf	inc/mime.h	/^    char buf[MIMEBUFSIZE];  \/* actual buffer *\/$/;"	m	struct:mimeBuf
buf	inc/oldGff.h	/^    char buf[256];$/;"	m	struct:gff
bufOffsetInFile	inc/linefile.h	/^    off_t bufOffsetInFile;	\/* Offset in file of first buffer byte. *\/$/;"	m	struct:lineFile
bufSize	inc/bigWig.h	/^     long bufSize;	\/* Size of allocated buffer *\/$/;"	m	struct:bigWigValsOnChrom
bufSize	inc/dystring.h	/^    int bufSize;		\/* Size of buffer. *\/$/;"	m	struct:dyString
bufSize	inc/linefile.h	/^    int bufSize;		\/* Size of buffer. *\/$/;"	m	struct:lineFile
bufSize	inc/oldGff.h	/^    int bufSize;$/;"	m	struct:gff
buffer	inc/md5.h	/^    uint8 buffer[64];$/;"	m	struct:md5_context
buildDate	inc/blastParse.h	/^    char *buildDate;                    \/* Build date of program. *\/$/;"	m	struct:blastFile
buildGIList	hg/lib/mafGene.c	/^static struct exonInfo *buildGIList(char *database, struct genePred *pred, $/;"	f	file:
buildResultFieldMap	hg/lib/genePredReader.c	/^static void buildResultFieldMap(struct genePredReader* gpr)$/;"	f	file:
buildSymHash	lib/sqlList.c	/^static struct hash *buildSymHash(char **values, boolean isEnum)$/;"	f	file:
builtIns	hg/lib/trackTable.c	/^static struct trackTable builtIns[] = $/;"	v	typeref:struct:trackTable	file:
bundleIntoTargets	lib/blastOut.c	/^static struct targetHits *bundleIntoTargets(struct axtBundle *abList)$/;"	f	file:
bundleList	jkOwnLib/gfOut.c	/^    struct axtBundle *bundleList;	\/* List of bundles. *\/$/;"	m	struct:axtData	typeref:struct:axtData::axtBundle	file:
buttonsForAll	hg/lib/hui.c	/^static void buttonsForAll()$/;"	f	file:
buttonsForOne	hg/lib/hui.c	/^static void buttonsForOne(char *name,char *class,boolean vertical)$/;"	f	file:
bwf	inc/metaWig.h	/^    struct bbiFile *bwf;$/;"	m	struct:metaWig	typeref:struct:metaWig::bbiFile
bwgAverageResolution	lib/bwgCreate.c	/^int bwgAverageResolution(struct bwgSection *sectionList)$/;"	f
bwgBedGraphItem	inc/bwgInternal.h	/^struct bwgBedGraphItem$/;"	s
bwgBedGraphItemCmp	lib/bwgCreate.c	/^static int bwgBedGraphItemCmp(const void *va, const void *vb)$/;"	f	file:
bwgCreate	lib/bwgCreate.c	/^static void bwgCreate(struct bwgSection *sectionList, struct hash *chromSizeHash, $/;"	f	file:
bwgDumpSummary	lib/bwgCreate.c	/^void bwgDumpSummary(struct bbiSummary *sum, FILE *f)$/;"	f
bwgFixedStepItem	inc/bwgInternal.h	/^struct bwgFixedStepItem$/;"	s
bwgFixedStepPacked	inc/bwgInternal.h	/^struct bwgFixedStepPacked$/;"	s
bwgItem	inc/bwgInternal.h	/^union bwgItem$/;"	u
bwgItemSize	lib/bwgCreate.c	/^static int bwgItemSize(enum bwgSectionType type)$/;"	f	file:
bwgMakeChromInfo	lib/bwgCreate.c	/^void bwgMakeChromInfo(struct bwgSection *sectionList, struct hash *chromSizeHash,$/;"	f
bwgParseWig	lib/bwgCreate.c	/^struct bwgSection *bwgParseWig($/;"	f
bwgReduceBedGraph	lib/bwgCreate.c	/^static void bwgReduceBedGraph(struct bwgSection *section, bits32 chromSize, int reduction, $/;"	f	file:
bwgReduceFixedStep	lib/bwgCreate.c	/^static void bwgReduceFixedStep(struct bwgSection *section, bits32 chromSize, int reduction, $/;"	f	file:
bwgReduceSectionList	lib/bwgCreate.c	/^struct bbiSummary *bwgReduceSectionList(struct bwgSection *sectionList, $/;"	f
bwgReduceVariableStep	lib/bwgCreate.c	/^static void bwgReduceVariableStep(struct bwgSection *section, bits32 chromSize, int reduction, $/;"	f	file:
bwgSection	inc/bwgInternal.h	/^struct bwgSection$/;"	s
bwgSectionCmp	lib/bwgCreate.c	/^int bwgSectionCmp(const void *va, const void *vb)$/;"	f
bwgSectionFetchKey	lib/bwgCreate.c	/^static struct cirTreeRange bwgSectionFetchKey(const void *va, void *context)$/;"	f	file:
bwgSectionFetchOffset	lib/bwgCreate.c	/^static bits64 bwgSectionFetchOffset(const void *va, void *context)$/;"	f	file:
bwgSectionHead	inc/bwgInternal.h	/^struct bwgSectionHead$/;"	s
bwgSectionHeadFromMem	lib/bwgQuery.c	/^void bwgSectionHeadFromMem(char **pPt, struct bwgSectionHead *head, boolean isSwapped)$/;"	f
bwgSectionHeadRead	lib/bwgQuery.c	/^static void bwgSectionHeadRead(struct bbiFile *bwf, struct bwgSectionHead *head)$/;"	f	file:
bwgSectionHeaderSize	lib/bwgCreate.c	689;"	d	file:
bwgSectionSize	lib/bwgCreate.c	/^static int bwgSectionSize(struct bwgSection *section)$/;"	f	file:
bwgSectionType	inc/bwgInternal.h	/^enum bwgSectionType $/;"	g
bwgSectionWrite	lib/bwgCreate.c	/^static int bwgSectionWrite(struct bwgSection *section, boolean doCompress, FILE *f)$/;"	f	file:
bwgTotalSectionSize	lib/bwgCreate.c	/^static bits64 bwgTotalSectionSize(struct bwgSection *sectionList)$/;"	f	file:
bwgTypeBedGraph	inc/bwgInternal.h	/^    bwgTypeBedGraph=1,$/;"	e	enum:bwgSectionType
bwgTypeFixedStep	inc/bwgInternal.h	/^    bwgTypeFixedStep=3,$/;"	e	enum:bwgSectionType
bwgTypeVariableStep	inc/bwgInternal.h	/^    bwgTypeVariableStep=2,$/;"	e	enum:bwgSectionType
bwgVariableStepItem	inc/bwgInternal.h	/^struct bwgVariableStepItem$/;"	s
bwgVariableStepItemCmp	lib/bwgCreate.c	/^static int bwgVariableStepItemCmp(const void *va, const void *vb)$/;"	f	file:
bwgVariableStepPacked	inc/bwgInternal.h	/^struct bwgVariableStepPacked$/;"	s
byId	inc/gff3.h	/^    struct hash *byId;    \/* index of gff3Ann object by id.  Links to first object of link discontinuous features *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::hash
byName	inc/vcf.h	/^    struct hash *byName;		\/\/ Hash records by name -- not populated until needed.$/;"	m	struct:vcfFile	typeref:struct:vcfFile::hash
byte	lib/nib.c	/^    UBYTE byte;		\/* Two nibble's worth of data. *\/$/;"	m	struct:nibStream	file:
byteRangeEnd	inc/net.h	/^   ssize_t byteRangeEnd;   \/* End of byte range use -1 for none *\/$/;"	m	struct:netParsedUrl
byteRangeStart	inc/net.h	/^   ssize_t byteRangeStart; \/* Start of byte range, use -1 for none *\/$/;"	m	struct:netParsedUrl
byteSwap16	lib/common.c	/^bits16 byteSwap16(bits16 a)$/;"	f
byteSwap32	lib/common.c	/^bits32 byteSwap32(bits32 a)$/;"	f
byteSwap64	lib/common.c	/^bits64 byteSwap64(bits64 a)$/;"	f
byteSwapDouble	lib/common.c	/^double byteSwapDouble(double a)$/;"	f
byteSwapFloat	lib/common.c	/^float byteSwapFloat(float a)$/;"	f
bytes	lib/gemfont.c	/^    char bytes[2];$/;"	m	union:__anon1	file:
bytesInBuf	inc/linefile.h	/^    int bytesInBuf;		\/* Bytes read into buffer. *\/$/;"	m	struct:lineFile
bytesInBuf	inc/oldGff.h	/^    int bytesInBuf;$/;"	m	struct:gff
bytesRead	hg/inc/wiggle.h	/^    unsigned long long bytesRead;    \/* reading stats, total wib bytes *\/$/;"	m	struct:wiggleDataStream
bytesSkipped	hg/inc/wiggle.h	/^    unsigned long long bytesSkipped; \/* reading stats, bytes not examined *\/$/;"	m	struct:wiggleDataStream
c1Ix	jkOwnLib/xensmall.c	/^    c1Ix,$/;"	e	enum:sevenStateIx	file:
c1c2MatchTable	jkOwnLib/xensmall.c	/^static int c1c2MatchTable[26*32];$/;"	v	file:
c2Ix	jkOwnLib/xensmall.c	/^    c2Ix,$/;"	e	enum:sevenStateIx	file:
c3Ix	jkOwnLib/xensmall.c	/^    c3Ix,$/;"	e	enum:sevenStateIx	file:
c3MatchTable	jkOwnLib/xensmall.c	/^static int c3MatchTable[26*32];$/;"	v	file:
cBlock	inc/chain.h	/^struct cBlock$/;"	s
cBlockCmpBoth	lib/chain.c	/^int cBlockCmpBoth(const void *va, const void *vb)$/;"	f
cBlockCmpDiagQuery	lib/chain.c	/^int cBlockCmpDiagQuery(const void *va, const void *vb)$/;"	f
cBlockCmpQuery	lib/chain.c	/^int cBlockCmpQuery(const void *va, const void *vb)$/;"	f
cBlockCmpTarget	lib/chain.c	/^int cBlockCmpTarget(const void *va, const void *vb)$/;"	f
cBlockFindCrossover	lib/chainConnect.c	/^void cBlockFindCrossover(struct cBlock *left, struct cBlock *right,$/;"	f
cBlocksAddOffset	lib/chain.c	/^void cBlocksAddOffset(struct cBlock *blockList, int qOff, int tOff)$/;"	f
cBlocksFromAliSym	lib/chain.c	/^struct cBlock *cBlocksFromAliSym(int symCount, char *qSym, char *tSym, $/;"	f
cBox	hg/inc/snoRNAs.h	/^    char *cBox;	\/* C box feature *\/$/;"	m	struct:snoRNAs
cBox	hg/lib/snoRNAs.h	/^    char *cBox;	\/* C box feature *\/$/;"	m	struct:snoRNAs
cDnaPosition	hg/inc/soterm.h	/^	    uint cDnaPosition;$/;"	m	struct:soCall::__anon12::codingChange
cInfo	hg/lib/chromGraph.c	/^struct cInfo$/;"	s	file:
cInfoMake	hg/lib/chromGraph.c	/^struct cInfo *cInfoMake(struct chromGraph *cgList, char *fileName)$/;"	f
cMscore	hg/inc/jaxQTL.h	/^    float cMscore;	\/* cM position of marker associated with peak LOD score *\/$/;"	m	struct:jaxQTL
cMscore	hg/inc/jaxQTL2.h	/^    float cMscore;	\/* cM position of marker associated with peak LOD score *\/$/;"	m	struct:jaxQTL2
cMscore	hg/inc/jaxQTL3.h	/^    float cMscore;	\/* cM position of marker associated with peak LOD score *\/$/;"	m	struct:jaxQTL3
cName	inc/asParse.h	/^    char *cName;                   \/* C type name. *\/$/;"	m	struct:asTypeInfo
cProb	inc/dnaMotif.h	/^    float *cProb;       \/* Probability of C's in each column. *\/$/;"	m	struct:dnaMotif
caIsCdna	jkOwnLib/crudeali.c	/^static boolean caIsCdna = TRUE;$/;"	v	file:
caTileSize	jkOwnLib/crudeali.c	/^static int caTileSize = 16;$/;"	v	file:
cacheDir	lib/udc.c	/^    char *cacheDir;		\/* Directory for cached file parts. *\/$/;"	m	struct:udcFile	file:
cacheFile	hg/lib/baseMaskCommon.c	/^static char *cacheFile(char *cacheDir, char *db, char *table, char *suffix)$/;"	f	file:
cacheTimeout	lib/udc.c	/^static int cacheTimeout = 0;$/;"	v	file:
calcCostBenefit	jkOwnLib/xensmall.c	/^static void calcCostBenefit(double gcRatio)$/;"	f	file:
calcDigitCount	lib/blastOut.c	/^static int calcDigitCount(struct axt *axt, int tSize, int qSize)$/;"	f	file:
calcGcRatio	jkOwnLib/xensmall.c	/^static double calcGcRatio(DNA *a, int aSize, DNA *b, int bSize)$/;"	f	file:
calcHet	hg/lib/hapmapSnpsCombined.c	/^int calcHet(struct hapmapSnpsCombined *thisItem)$/;"	f
calcLevelSizes	lib/cirTree.c	/^void calcLevelSizes(struct rTree *tree, int *levelSizes, int level, int maxLevel)$/;"	f
calcLooseGap	lib/ffScore.c	/^static int calcLooseGap(int hGap, int nGap)$/;"	f	file:
calcSlope	lib/gapCalc.c	/^static double calcSlope(double y2, double y1, double x2, double x1)$/;"	f	file:
calcSpliceScore	jkOwnLib/ffSeedExtend.c	/^static int calcSpliceScore(struct axtScoreScheme *ss, $/;"	f	file:
calcStdFromSums	lib/hmmstats.c	/^double calcStdFromSums(double sum, double sumSquares, bits64 n)$/;"	f
calcTightGap	lib/ffScore.c	/^static int calcTightGap(int hGap, int nGap)$/;"	f	file:
calcVarianceFromSums	lib/hmmstats.c	/^double calcVarianceFromSums(double sum, double sumSquares, bits64 n)$/;"	f
canAdd	jkOwnLib/fuzzyFind.c	/^boolean canAdd(struct protoGene *a, struct protoGene *b)$/;"	f
canPack	hg/inc/trackDb.h	/^    unsigned char canPack;	\/* 1 if can pack track display, 0 otherwise *\/$/;"	m	struct:trackDb
canonicalRangeExp	hg/lib/hgFind.c	/^char *canonicalRangeExp = $/;"	v
caqSig	inc/sig.h	56;"	d
carefulAlignAdd	lib/memalloc.c	/^static int carefulAlignAdd;     \/* Do aliSize = *(unaliSize+carefulAlignAdd)&carefulAlignMask); *\/$/;"	v	file:
carefulAlignMask	lib/memalloc.c	/^static bits32 carefulAlignMask;    \/* to make sure requests are aligned. *\/$/;"	v	file:
carefulAlignMask	lib/memalloc.c	/^static bits64 carefulAlignMask;    \/* to make sure requests are aligned. *\/$/;"	v	file:
carefulAlignSize	lib/memalloc.c	/^static int carefulAlignSize;    \/* Alignment size for machine - 8 bytes for DEC alpha, 4 for Sparc. *\/$/;"	v	file:
carefulAlloc	lib/memalloc.c	/^static void *carefulAlloc(size_t size)$/;"	f	file:
carefulAlloced	lib/memalloc.c	/^static size_t carefulAlloced;$/;"	v	file:
carefulCheckHeap	lib/memalloc.c	/^void carefulCheckHeap()$/;"	f
carefulClose	lib/common.c	/^void carefulClose(FILE **pFile)$/;"	f
carefulCloseWarn	lib/common.c	/^boolean carefulCloseWarn(FILE **pFile)$/;"	f
carefulCountBlocksAllocated	lib/memalloc.c	/^int carefulCountBlocksAllocated()$/;"	f
carefulFree	lib/memalloc.c	/^static void carefulFree(void *vpt)$/;"	f	file:
carefulMaxToAlloc	lib/memalloc.c	/^static size_t carefulMaxToAlloc;$/;"	v	file:
carefulMemBlock	lib/memalloc.c	/^struct carefulMemBlock$/;"	s	file:
carefulMemHandler	lib/memalloc.c	/^static struct memHandler carefulMemHandler = $/;"	v	typeref:struct:memHandler	file:
carefulMemInit	lib/memalloc.c	/^static void carefulMemInit(size_t maxToAlloc)$/;"	f	file:
carefulParent	lib/memalloc.c	/^static struct memHandler *carefulParent;$/;"	v	typeref:struct:memHandler	file:
carefulRealloc	lib/memalloc.c	/^static void *carefulRealloc(void *vpt, size_t size)$/;"	f	file:
carefulSlog	lib/slog.c	/^int carefulSlog(double val)$/;"	f
carefulTotalAllocated	lib/memalloc.c	/^long carefulTotalAllocated()$/;"	f
cart	hg/inc/cart.h	/^struct cart$/;"	s
cartAddString	hg/lib/cart.c	/^void cartAddString(struct cart *cart, char *var, char *val)$/;"	f
cartAndCookie	hg/lib/cart.c	/^struct cart *cartAndCookie(char *cookieName, char **exclude,$/;"	f
cartAndCookieNoContent	hg/lib/cart.c	/^struct cart *cartAndCookieNoContent(char *cookieName, char **exclude,$/;"	f
cartAndCookieWithHtml	hg/lib/cart.c	/^struct cart *cartAndCookieWithHtml(char *cookieName, char **exclude,$/;"	f
cartBoolean	hg/lib/cart.c	/^boolean cartBoolean(struct cart *cart, char *var)$/;"	f
cartBooleanClosestToHome	hg/lib/cart.c	/^boolean cartBooleanClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix)$/;"	f
cartBooleanDb	hg/inc/cart.h	/^INLINE boolean cartBooleanDb(struct cart *cart, char *db, char *var)$/;"	f
cartCc	hg/lib/hdb.c	/^static struct sqlConnCache *cartCc = NULL;  \/* cache for cart; normally same as centralCc *\/$/;"	v	typeref:struct:sqlConnCache	file:
cartCgiUsualBoolean	hg/lib/cart.c	/^boolean cartCgiUsualBoolean(struct cart *cart, char *var, boolean usual)$/;"	f
cartCgiUsualDouble	hg/lib/cart.c	/^double cartCgiUsualDouble(struct cart *cart, char *var, double usual)$/;"	f
cartCgiUsualInt	hg/lib/cart.c	/^int cartCgiUsualInt(struct cart *cart, char *var, int usual)$/;"	f
cartCgiUsualString	hg/lib/cart.c	/^char *cartCgiUsualString(struct cart *cart, char *var, char *usual)$/;"	f
cartCheckout	hg/lib/cart.c	/^void cartCheckout(struct cart **pCart)$/;"	f
cartCopyCustomTracks	hg/lib/cart.c	/^static void cartCopyCustomTracks(struct cart *cart, struct hash *oldVars)$/;"	f	file:
cartDb	hg/inc/cartDb.h	/^struct cartDb$/;"	s
cartDb	hg/lib/hdb.c	/^static char *cartDb = NULL;$/;"	v	file:
cartDbCommaIn	hg/lib/cartDb.c	/^struct cartDb *cartDbCommaIn(char **pS, struct cartDb *ret)$/;"	f
cartDbCommaOut	hg/inc/cartDb.h	59;"	d
cartDbFree	hg/lib/cartDb.c	/^void cartDbFree(struct cartDb **pEl)$/;"	f
cartDbFreeList	hg/lib/cartDb.c	/^void cartDbFreeList(struct cartDb **pList)$/;"	f
cartDbLoad	hg/lib/cartDb.c	/^struct cartDb *cartDbLoad(char **row)$/;"	f
cartDbLoadAll	hg/lib/cartDb.c	/^struct cartDb *cartDbLoadAll(char *fileName) $/;"	f
cartDbLoadFromId	hg/lib/cart.c	/^struct cartDb *cartDbLoadFromId(struct sqlConnection *conn, char *table, int id)$/;"	f
cartDbLoadWhere	hg/lib/cartDb.c	/^struct cartDb *cartDbLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
cartDbOutput	hg/lib/cartDb.c	/^void cartDbOutput(struct cartDb *el, FILE *f, char sep, char lastSep) $/;"	f
cartDbStaticLoad	hg/lib/cartDb.c	/^void cartDbStaticLoad(char **row, struct cartDb *ret)$/;"	f
cartDbTabOut	hg/inc/cartDb.h	56;"	d
cartDefaultConnector	hg/lib/cart.c	/^DbConnector cartDefaultConnector = hConnectCart;$/;"	v
cartDefaultDisconnector	hg/lib/cart.c	/^DbDisconnect cartDefaultDisconnector = hDisconnectCart;$/;"	v
cartDouble	hg/lib/cart.c	/^double cartDouble(struct cart *cart, char *var)$/;"	f
cartDoubleDb	hg/inc/cart.h	/^INLINE double cartDoubleDb(struct cart *cart, char *db, char *var)$/;"	f
cartDump	hg/lib/cart.c	/^void cartDump(struct cart *cart)$/;"	f
cartDumpItem	hg/lib/cart.c	/^static void cartDumpItem(struct hashEl *hel,boolean asTable)$/;"	f	file:
cartDumpLike	hg/lib/cart.c	/^void cartDumpLike(struct cart *cart, char *wildcard)$/;"	f
cartDumpList	hg/lib/cart.c	/^void cartDumpList(struct hashEl *elList,boolean asTable)$/;"	f
cartDumpPrefix	hg/lib/cart.c	/^void cartDumpPrefix(struct cart *cart, char *prefix)$/;"	f
cartEarlyWarningHandler	hg/lib/cart.c	/^void cartEarlyWarningHandler(char *format, va_list args)$/;"	f
cartEmptyShell	hg/lib/cart.c	/^void cartEmptyShell(void (*doMiddle)(struct cart *cart), char *cookieName,$/;"	f
cartEncodeState	hg/lib/cart.c	/^void cartEncodeState(struct cart *cart, struct dyString *dy)$/;"	f
cartErrorCatcher	hg/lib/cart.c	/^static void cartErrorCatcher(void (*doMiddle)(struct cart *cart),$/;"	f	file:
cartExclude	hg/lib/cart.c	/^void cartExclude(struct cart *cart, char *var)$/;"	f
cartFindFirstLike	hg/lib/cart.c	/^char *cartFindFirstLike(struct cart *cart, char *wildCard)$/;"	f
cartFindLike	hg/lib/cart.c	/^struct hashEl *cartFindLike(struct cart *cart, char *wildCard)$/;"	f
cartFindPrefix	hg/lib/cart.c	/^struct hashEl *cartFindPrefix(struct cart *cart, char *prefix)$/;"	f
cartFindSome	hg/lib/cart.c	/^static struct hashEl *cartFindSome(struct cart *cart, char *pattern,$/;"	f	file:
cartFooter	hg/lib/cart.c	/^void cartFooter(void)$/;"	f
cartForSession	hg/lib/cart.c	/^struct cart *cartForSession(char *cookieName, char **exclude,$/;"	f
cartFromCgiOnly	hg/lib/cart.c	/^struct cart *cartFromCgiOnly(unsigned int userId, unsigned int sessionId,$/;"	f
cartFromHash	hg/lib/cart.c	/^struct cart *cartFromHash(struct hash *hash)$/;"	f
cartGetOrderFromFile	hg/lib/cart.c	/^char *cartGetOrderFromFile(char *genomeDb, struct cart *cart, char *speciesUseFile)$/;"	f
cartGetOrderFromFileAndMsaTable	hg/lib/cart.c	/^char *cartGetOrderFromFileAndMsaTable(char *genomeDb, struct cart *cart, char *speciesUseFile, char *msaTable)$/;"	f
cartHtmlEnd	hg/lib/cart.c	/^void cartHtmlEnd()$/;"	f
cartHtmlShell	hg/lib/cart.c	/^void cartHtmlShell(char *title, void (*doMiddle)(struct cart *cart),$/;"	f
cartHtmlShellPB	hg/lib/cart.c	/^void cartHtmlShellPB(char *title, void (*doMiddle)(struct cart *cart),$/;"	f
cartHtmlShellPbGlobal	hg/lib/cart.c	/^void cartHtmlShellPbGlobal(char *title, void (*doMiddle)(struct cart *cart),$/;"	f
cartHtmlShellWithHead	hg/lib/cart.c	/^void cartHtmlShellWithHead(char *head, char *title, void (*doMiddle)(struct cart *cart),$/;"	f
cartHtmlStart	hg/lib/cart.c	/^void cartHtmlStart(char *title)$/;"	f
cartInt	hg/lib/cart.c	/^int cartInt(struct cart *cart, char *var)$/;"	f
cartIntDb	hg/inc/cart.h	/^INLINE int cartIntDb(struct cart *cart, char *db, char *var)$/;"	f
cartIntExp	hg/lib/cart.c	/^int cartIntExp(struct cart *cart, char *var)$/;"	f
cartJustify	hg/lib/cart.c	/^static void cartJustify(struct cart *cart, struct hash *oldVars)$/;"	f	file:
cartListVarExists	hg/lib/cart.c	/^boolean cartListVarExists(struct cart *cart, char *var)$/;"	f
cartListVarExistsAnyLevel	hg/lib/cart.c	/^boolean cartListVarExistsAnyLevel(struct cart *cart, struct trackDb *tdb,$/;"	f
cartLoadSettings	hg/lib/cart.c	/^void cartLoadSettings(struct lineFile *lf, struct cart *cart,$/;"	f
cartLoadUserSession	hg/lib/cart.c	/^void cartLoadUserSession(struct sqlConnection *conn, char *sessionOwner,$/;"	f
cartLookUpVariableClosestToHome	hg/lib/cart.c	/^char *cartLookUpVariableClosestToHome(struct cart *cart, struct trackDb *tdb,$/;"	f
cartMakeCheckBox	hg/lib/cart.c	/^void cartMakeCheckBox(struct cart *cart, char *var, boolean defaultVal)$/;"	f
cartMakeDoubleVar	hg/lib/cart.c	/^void cartMakeDoubleVar(struct cart *cart, char *var, double defaultVal, int maxDigits)$/;"	f
cartMakeIntVar	hg/lib/cart.c	/^void cartMakeIntVar(struct cart *cart, char *var, int defaultVal, int maxDigits)$/;"	f
cartMakeRadioButton	hg/lib/cart.c	/^void cartMakeRadioButton(struct cart *cart, char *var, char *val, char *defaultVal)$/;"	f
cartMakeTextVar	hg/lib/cart.c	/^void cartMakeTextVar(struct cart *cart, char *var, char *defaultVal, int charSize)$/;"	f
cartMultShadowVar	hg/lib/cart.c	/^static char *cartMultShadowVar(struct cart *cart, char *var)$/;"	f	file:
cartNamesPruneChanged	hg/lib/cart.c	/^static int cartNamesPruneChanged(struct cart *newCart,struct hash *oldVars,$/;"	f	file:
cartNew	hg/lib/cart.c	/^struct cart *cartNew(unsigned int userId, unsigned int sessionId,$/;"	f
cartNonemptyString	hg/lib/cart.c	/^char *cartNonemptyString(struct cart *cart, char *name)$/;"	f
cartNonemptyStringDb	hg/inc/cart.h	/^INLINE char *cartNonemptyStringDb(struct cart *cart, char *db, char *name)$/;"	f
cartOfNothing	hg/lib/cart.c	/^struct cart *cartOfNothing()$/;"	f
cartOptionalSlNameList	hg/lib/cart.c	/^struct slName *cartOptionalSlNameList(struct cart *cart, char *var)$/;"	f
cartOptionalSlNameListClosestToHome	hg/lib/cart.c	/^struct slName *cartOptionalSlNameListClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix)$/;"	f
cartOptionalString	hg/lib/cart.c	/^char *cartOptionalString(struct cart *cart, char *var)$/;"	f
cartOptionalStringClosestToHome	hg/inc/cart.h	484;"	d
cartOptionalStringDb	hg/inc/cart.h	/^INLINE char *cartOptionalStringDb(struct cart *cart, char *db, char *var)$/;"	f
cartOrTdbDouble	hg/lib/cart.c	/^double cartOrTdbDouble(struct cart *cart, struct trackDb *tdb, char *var, double defaultVal)$/;"	f
cartOrTdbInt	hg/lib/cart.c	/^int cartOrTdbInt(struct cart *cart, struct trackDb *tdb, char *var, int defaultVal)$/;"	f
cartOrTdbString	hg/lib/cart.c	/^char *cartOrTdbString(struct cart *cart, struct trackDb *tdb, char *var, char *defaultVal)$/;"	f
cartParseOverHash	hg/lib/cart.c	/^static void cartParseOverHash(struct cart *cart, char *contents)$/;"	f	file:
cartRemove	hg/lib/cart.c	/^void cartRemove(struct cart *cart, char *var)$/;"	f
cartRemoveAllForTdb	hg/lib/cart.c	/^void cartRemoveAllForTdb(struct cart *cart, struct trackDb *tdb)$/;"	f
cartRemoveAllForTdbAndChildren	hg/lib/cart.c	/^void cartRemoveAllForTdbAndChildren(struct cart *cart, struct trackDb *tdb)$/;"	f
cartRemoveAndCount	hg/lib/cart.c	/^static int cartRemoveAndCount(struct cart *cart, char *var)$/;"	f	file:
cartRemoveAndCountNoShadow	hg/lib/cart.c	/^static int cartRemoveAndCountNoShadow(struct cart *cart, char *var)$/;"	f	file:
cartRemoveExcept	hg/lib/cart.c	/^void cartRemoveExcept(struct cart *cart, char **except)$/;"	f
cartRemoveFromTdbTree	hg/lib/cart.c	/^int cartRemoveFromTdbTree(struct cart *cart,struct trackDb *tdb,char *suffix,boolean skipParent)$/;"	f
cartRemoveLike	hg/lib/cart.c	/^void cartRemoveLike(struct cart *cart, char *wildCard)$/;"	f
cartRemoveOldFromTdbTree	hg/lib/cart.c	/^static int cartRemoveOldFromTdbTree(struct cart *newCart,struct hash *oldVars,struct trackDb *tdb,char *suffix,char *parentVal,boolean skipParent)$/;"	f	file:
cartRemovePrefix	hg/lib/cart.c	/^void cartRemovePrefix(struct cart *cart, char *prefix)$/;"	f
cartRemoveVariableClosestToHome	hg/lib/cart.c	/^void cartRemoveVariableClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix)$/;"	f
cartResetInDb	hg/lib/cart.c	/^void cartResetInDb(char *cookieName)$/;"	f
cartSaveSession	hg/lib/cart.c	/^void cartSaveSession(struct cart *cart)$/;"	f
cartSessionId	hg/lib/cart.c	/^unsigned int cartSessionId(struct cart *cart)$/;"	f
cartSessionVarName	hg/lib/cart.c	/^char *cartSessionVarName()$/;"	f
cartSetBoolean	hg/lib/cart.c	/^void cartSetBoolean(struct cart *cart, char *var, boolean val)$/;"	f
cartSetBooleanDb	hg/inc/cart.h	/^INLINE void cartSetBooleanDb(struct cart *cart, char *db, char *var, boolean val)$/;"	f
cartSetDbConnector	hg/lib/cart.c	/^void cartSetDbConnector(DbConnector connector)$/;"	f
cartSetDbDisconnector	hg/lib/cart.c	/^void cartSetDbDisconnector(DbDisconnect disconnector)$/;"	f
cartSetDouble	hg/lib/cart.c	/^void cartSetDouble(struct cart *cart, char *var, double val)$/;"	f
cartSetDoubleDb	hg/inc/cart.h	/^INLINE void cartSetDoubleDb(struct cart *cart, char *db, char *var, double val)$/;"	f
cartSetInt	hg/lib/cart.c	/^void cartSetInt(struct cart *cart, char *var, int val)$/;"	f
cartSetIntDb	hg/inc/cart.h	/^INLINE void cartSetIntDb(struct cart *cart, char *db, char *var, int val)$/;"	f
cartSetString	hg/lib/cart.c	/^void cartSetString(struct cart *cart, char *var, char *val)$/;"	f
cartSetStringDb	hg/inc/cart.h	/^INLINE void cartSetStringDb(struct cart *cart, char *db, char *var, char *val)$/;"	f
cartSidUrlString	hg/lib/cart.c	/^char *cartSidUrlString(struct cart *cart)$/;"	f
cartString	hg/lib/cart.c	/^char *cartString(struct cart *cart, char *var)$/;"	f
cartStringClosestToHome	hg/lib/cart.c	/^char *cartStringClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix)$/;"	f
cartStringDb	hg/inc/cart.h	/^INLINE char *cartStringDb(struct cart *cart, char *db, char *var)$/;"	f
cartTablesOk	hg/lib/cart.c	/^boolean cartTablesOk(struct sqlConnection *conn)$/;"	f
cartTdbOverrideSuperTracks	hg/lib/cart.c	/^static boolean cartTdbOverrideSuperTracks(struct cart *cart,struct trackDb *tdb,boolean ifJustSelected)$/;"	f	file:
cartTdbParentShapeVis	hg/lib/cart.c	/^static int cartTdbParentShapeVis(struct cart *cart,struct trackDb *parent,char *view,struct hash *subVisHash,boolean reshapeFully)$/;"	f	file:
cartTdbTreeCleanupOverrides	hg/lib/cart.c	/^boolean cartTdbTreeCleanupOverrides(struct trackDb *tdb,struct cart *newCart,struct hash *oldVars, struct lm *lm)$/;"	f
cartTdbTreeReshapeIfNeeded	hg/lib/cart.c	/^boolean cartTdbTreeReshapeIfNeeded(struct cart *cart,struct trackDb *tdbContainer)$/;"	f
cartTrace	hg/lib/cart.c	/^void cartTrace(struct cart *cart, char *when, struct sqlConnection *conn)$/;"	f
cartUserId	hg/lib/cart.c	/^unsigned int cartUserId(struct cart *cart)$/;"	f
cartUsualBoolean	hg/lib/cart.c	/^boolean cartUsualBoolean(struct cart *cart, char *var, boolean usual)$/;"	f
cartUsualBooleanClosestToHome	hg/lib/cart.c	/^boolean cartUsualBooleanClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix,boolean usual)$/;"	f
cartUsualBooleanDb	hg/inc/cart.h	/^INLINE boolean cartUsualBooleanDb(struct cart *cart, char *db, char *var, boolean usual)$/;"	f
cartUsualDouble	hg/lib/cart.c	/^double cartUsualDouble(struct cart *cart, char *var, double usual)$/;"	f
cartUsualDoubleClosestToHome	hg/lib/cart.c	/^double cartUsualDoubleClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix, double usual)$/;"	f
cartUsualDoubleDb	hg/inc/cart.h	/^INLINE double cartUsualDoubleDb(struct cart *cart, char *db, char *var, double usual)$/;"	f
cartUsualInt	hg/lib/cart.c	/^int cartUsualInt(struct cart *cart, char *var, int usual)$/;"	f
cartUsualIntClipped	hg/lib/cart.c	/^int cartUsualIntClipped(struct cart *cart, char *var, int usual,$/;"	f
cartUsualIntClosestToHome	hg/lib/cart.c	/^int cartUsualIntClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix, int usual)$/;"	f
cartUsualIntDb	hg/inc/cart.h	/^INLINE int cartUsualIntDb(struct cart *cart, char *db, char *var, int usual)$/;"	f
cartUsualString	hg/lib/cart.c	/^char *cartUsualString(struct cart *cart, char *var, char *usual)$/;"	f
cartUsualStringClosestToHome	hg/lib/cart.c	/^char *cartUsualStringClosestToHome(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix, char *usual)$/;"	f
cartUsualStringDb	hg/inc/cart.h	/^INLINE char *cartUsualStringDb(struct cart *cart, char *db, char *var, char *usual)$/;"	f
cartVaWebStart	hg/lib/cart.c	/^void cartVaWebStart(struct cart *cart, char *db, char *format, va_list args)$/;"	f
cartValueHasChanged	hg/lib/cart.c	/^boolean cartValueHasChanged(struct cart *newCart,struct hash *oldVars,char *setting,boolean ignoreRemoved,boolean ignoreCreated)$/;"	f
cartVarExists	hg/lib/cart.c	/^boolean cartVarExists(struct cart *cart, char *var)$/;"	f
cartVarExistsAnyLevel	hg/lib/cart.c	/^boolean cartVarExistsAnyLevel(struct cart *cart, struct trackDb *tdb, boolean parentLevel, char *suffix)$/;"	f
cartVarExistsDb	hg/inc/cart.h	/^INLINE boolean cartVarExistsDb(struct cart *cart, char *db, char *var)$/;"	f
cartVarsLike	hg/lib/cart.c	/^struct slPair *cartVarsLike(struct cart *cart, char *wildCard)$/;"	f
cartVarsWithPrefix	hg/lib/cart.c	/^struct slPair *cartVarsWithPrefix(struct cart *cart, char *prefix)$/;"	f
cartVarsWithPrefixLm	hg/lib/cart.c	/^struct slPair *cartVarsWithPrefixLm(struct cart *cart, char *prefix, struct lm *lm)$/;"	f
cartWarnCatcher	hg/lib/cart.c	/^void cartWarnCatcher(void (*doMiddle)(struct cart *cart), struct cart *cart, WarnHandler warner)$/;"	f
cartWebEnd	hg/lib/cart.c	/^void cartWebEnd()$/;"	f
cartWebStart	hg/lib/cart.c	/^void cartWebStart(struct cart *cart, char *db, char *format, ...)$/;"	f
cartWriteCookie	hg/lib/cart.c	/^void cartWriteCookie(struct cart *cart, char *cookieName)$/;"	f
caseId	hg/inc/mcnBreakpoints.h	/^    char *caseId;	\/* MCN Case ID *\/$/;"	m	struct:mcnBreakpoints
catTwoStrings	lib/common.c	/^char *catTwoStrings(char *a, char *b)$/;"	f
catchSignal	lib/cheapcgi.c	/^static void catchSignal(int sigNum)$/;"	f	file:
category	hg/inc/txInfo.h	/^    char *category;	\/* coding\/nearCoding\/noncoding for now *\/$/;"	m	struct:txInfo
causes	hg/inc/geneCheck.h	/^    char *causes;	\/* comma separated string with list of causes (for easy matching) *\/$/;"	m	struct:geneCheck
cb	lib/chainBlock.c	/^    struct cBlock *cb;	        \/* Start position and score from user. *\/$/;"	m	struct:kdLeaf	typeref:struct:kdLeaf::cBlock	file:
ccds	hg/inc/ccdsInfo.h	/^    char ccds[13];	\/* CCDS id *\/$/;"	m	struct:ccdsInfo
ccds	hg/inc/ccdsNotes.h	/^    char ccds[13];	\/* CCDS id *\/$/;"	m	struct:ccdsNotes
ccds	hg/inc/cdsPick.h	/^    char *ccds;	\/* CCDS accession if available. *\/$/;"	m	struct:cdsPick
ccdsGeneMap	hg/inc/ccdsGeneMap.h	/^struct ccdsGeneMap$/;"	s
ccdsGeneMapCcdsIdCmp	hg/lib/ccdsGeneMap.c	/^int ccdsGeneMapCcdsIdCmp(const void *va, const void *vb)$/;"	f
ccdsGeneMapCommaIn	hg/lib/ccdsGeneMap.c	/^struct ccdsGeneMap *ccdsGeneMapCommaIn(char **pS, struct ccdsGeneMap *ret)$/;"	f
ccdsGeneMapCommaOut	hg/inc/ccdsGeneMap.h	60;"	d
ccdsGeneMapFree	hg/lib/ccdsGeneMap.c	/^void ccdsGeneMapFree(struct ccdsGeneMap **pEl)$/;"	f
ccdsGeneMapFreeList	hg/lib/ccdsGeneMap.c	/^void ccdsGeneMapFreeList(struct ccdsGeneMap **pList)$/;"	f
ccdsGeneMapGeneIdCmp	hg/lib/ccdsGeneMap.c	/^int ccdsGeneMapGeneIdCmp(const void *va, const void *vb)$/;"	f
ccdsGeneMapGetCreateSql	hg/lib/ccdsGeneMap.c	/^char *ccdsGeneMapGetCreateSql(char *table)$/;"	f
ccdsGeneMapLoad	hg/lib/ccdsGeneMap.c	/^struct ccdsGeneMap *ccdsGeneMapLoad(char **row)$/;"	f
ccdsGeneMapLoadAll	hg/lib/ccdsGeneMap.c	/^struct ccdsGeneMap *ccdsGeneMapLoadAll(char *fileName) $/;"	f
ccdsGeneMapLoadAllByChar	hg/lib/ccdsGeneMap.c	/^struct ccdsGeneMap *ccdsGeneMapLoadAllByChar(char *fileName, char chopper) $/;"	f
ccdsGeneMapLoadAllByTab	hg/inc/ccdsGeneMap.h	38;"	d
ccdsGeneMapOutput	hg/lib/ccdsGeneMap.c	/^void ccdsGeneMapOutput(struct ccdsGeneMap *el, FILE *f, char sep, char lastSep) $/;"	f
ccdsGeneMapSelectByCcds	hg/lib/ccdsGeneMap.c	/^struct ccdsGeneMap *ccdsGeneMapSelectByCcds(struct sqlConnection *conn, char *mapTable,$/;"	f
ccdsGeneMapSelectByGene	hg/lib/ccdsGeneMap.c	/^struct ccdsGeneMap *ccdsGeneMapSelectByGene(struct sqlConnection *conn, char *mapTable,$/;"	f
ccdsGeneMapSelectByGeneOver	hg/lib/ccdsGeneMap.c	/^struct ccdsGeneMap *ccdsGeneMapSelectByGeneOver(struct sqlConnection *conn, char *mapTable,$/;"	f
ccdsGeneMapSimilarityCmp	hg/lib/ccdsGeneMap.c	/^int ccdsGeneMapSimilarityCmp(const void *va, const void *vb)$/;"	f
ccdsGeneMapStaticLoad	hg/lib/ccdsGeneMap.c	/^void ccdsGeneMapStaticLoad(char **row, struct ccdsGeneMap *ret)$/;"	f
ccdsGeneMapTabOut	hg/inc/ccdsGeneMap.h	57;"	d
ccdsId	hg/inc/ccdsGeneMap.h	/^    char *ccdsId;	\/* CCDS id with version  *\/$/;"	m	struct:ccdsGeneMap
ccdsId	hg/inc/hgnc.h	/^    char *ccdsId;	\/* CCDS ID *\/$/;"	m	struct:hgnc
ccdsInfo	hg/inc/ccdsInfo.h	/^struct ccdsInfo$/;"	s
ccdsInfoCcdsMRnaSort	hg/lib/ccdsInfo.c	/^void ccdsInfoCcdsMRnaSort(struct ccdsInfo **ccdsInfos)$/;"	f
ccdsInfoCommaIn	hg/lib/ccdsInfo.c	/^struct ccdsInfo *ccdsInfoCommaIn(char **pS, struct ccdsInfo *ret)$/;"	f
ccdsInfoCommaOut	hg/inc/ccdsInfo.h	67;"	d
ccdsInfoEnsembl	hg/inc/ccdsInfo.h	/^    ccdsInfoEnsembl = 2,$/;"	e	enum:ccdsInfoSrcDb
ccdsInfoFree	hg/lib/ccdsInfo.c	/^void ccdsInfoFree(struct ccdsInfo **pEl)$/;"	f
ccdsInfoFreeList	hg/lib/ccdsInfo.c	/^void ccdsInfoFreeList(struct ccdsInfo **pList)$/;"	f
ccdsInfoGetCreateSql	hg/lib/ccdsInfo.c	/^char *ccdsInfoGetCreateSql(char *table)$/;"	f
ccdsInfoLoad	hg/lib/ccdsInfo.c	/^struct ccdsInfo *ccdsInfoLoad(char **row)$/;"	f
ccdsInfoLoadAll	hg/lib/ccdsInfo.c	/^struct ccdsInfo *ccdsInfoLoadAll(char *fileName) $/;"	f
ccdsInfoLoadAllByChar	hg/lib/ccdsInfo.c	/^struct ccdsInfo *ccdsInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
ccdsInfoLoadAllByTab	hg/inc/ccdsInfo.h	45;"	d
ccdsInfoMRnaSort	hg/lib/ccdsInfo.c	/^void ccdsInfoMRnaSort(struct ccdsInfo **ccdsInfos)$/;"	f
ccdsInfoNcbi	hg/inc/ccdsInfo.h	/^    ccdsInfoNcbi = 1,$/;"	e	enum:ccdsInfoSrcDb
ccdsInfoNull	hg/inc/ccdsInfo.h	/^    ccdsInfoNull = 0,  \/* used for no src db *\/$/;"	e	enum:ccdsInfoSrcDb
ccdsInfoOutput	hg/lib/ccdsInfo.c	/^void ccdsInfoOutput(struct ccdsInfo *el, FILE *f, char sep, char lastSep) $/;"	f
ccdsInfoSelectByCcds	hg/lib/ccdsInfo.c	/^struct ccdsInfo *ccdsInfoSelectByCcds(struct sqlConnection *conn, char *ccdsId,$/;"	f
ccdsInfoSelectByMrna	hg/lib/ccdsInfo.c	/^struct ccdsInfo *ccdsInfoSelectByMrna(struct sqlConnection *conn, char *mrnaAcc)$/;"	f
ccdsInfoSrcDb	hg/inc/ccdsInfo.h	/^enum ccdsInfoSrcDb$/;"	g
ccdsInfoStaticLoad	hg/lib/ccdsInfo.c	/^void ccdsInfoStaticLoad(char **row, struct ccdsInfo *ret)$/;"	f
ccdsInfoTabOut	hg/inc/ccdsInfo.h	64;"	d
ccdsInfoVega	hg/inc/ccdsInfo.h	/^    ccdsInfoVega = 3$/;"	e	enum:ccdsInfoSrcDb
ccdsNotes	hg/inc/ccdsNotes.h	/^struct ccdsNotes$/;"	s
ccdsNotesCommaIn	hg/lib/ccdsNotes.c	/^struct ccdsNotes *ccdsNotesCommaIn(char **pS, struct ccdsNotes *ret)$/;"	f
ccdsNotesCommaOut	hg/inc/ccdsNotes.h	57;"	d
ccdsNotesFree	hg/lib/ccdsNotes.c	/^void ccdsNotesFree(struct ccdsNotes **pEl)$/;"	f
ccdsNotesFreeList	hg/lib/ccdsNotes.c	/^void ccdsNotesFreeList(struct ccdsNotes **pList)$/;"	f
ccdsNotesGetCreateSql	hg/lib/ccdsNotes.c	/^char *ccdsNotesGetCreateSql(char *table)$/;"	f
ccdsNotesLoad	hg/lib/ccdsNotes.c	/^struct ccdsNotes *ccdsNotesLoad(char **row)$/;"	f
ccdsNotesLoadAll	hg/lib/ccdsNotes.c	/^struct ccdsNotes *ccdsNotesLoadAll(char *fileName) $/;"	f
ccdsNotesLoadAllByChar	hg/lib/ccdsNotes.c	/^struct ccdsNotes *ccdsNotesLoadAllByChar(char *fileName, char chopper) $/;"	f
ccdsNotesLoadAllByTab	hg/inc/ccdsNotes.h	35;"	d
ccdsNotesOutput	hg/lib/ccdsNotes.c	/^void ccdsNotesOutput(struct ccdsNotes *el, FILE *f, char sep, char lastSep) $/;"	f
ccdsNotesStaticLoad	hg/lib/ccdsNotes.c	/^void ccdsNotesStaticLoad(char **row, struct ccdsNotes *ret)$/;"	f
ccdsNotesTabOut	hg/inc/ccdsNotes.h	54;"	d
ccov	hg/inc/genomicSuperDups.h	/^    char *ccov;	\/* clone coverage celera screened *\/$/;"	m	struct:genomicSuperDups
cdEnd	hg/inc/pgSnp.h	/^    int cdEnd;$/;"	m	struct:pgCodon
cdStart	hg/inc/pgSnp.h	/^    int cdStart;$/;"	m	struct:pgCodon
cdaAli	inc/cda.h	/^struct cdaAli$/;"	s
cdaAliFromFfAli	lib/cda.c	/^struct cdaAli *cdaAliFromFfAli(struct ffAli *aliList, $/;"	f
cdaBlock	inc/cda.h	/^struct cdaBlock$/;"	s
cdaCloneIsReverse	lib/cda.c	/^boolean cdaCloneIsReverse(struct cdaAli *cda)$/;"	f
cdaCloneStrand	lib/cda.c	/^char cdaCloneStrand(struct cdaAli *cda)$/;"	f
cdaCoalesceAll	lib/cda.c	/^void cdaCoalesceAll(struct cdaAli *ca, boolean updateScore)$/;"	f
cdaCoalesceBlocks	lib/cda.c	/^void cdaCoalesceBlocks(struct cdaAli *ca)$/;"	f
cdaCoalesceFast	lib/cda.c	/^void cdaCoalesceFast(struct cdaAli *ca)$/;"	f
cdaCoalesceOne	lib/cda.c	/^static void cdaCoalesceOne(struct cdaAli *ca, boolean updateScore)$/;"	f	file:
cdaCreate	lib/cda.c	/^static FILE *cdaCreate(char *fileName)$/;"	f	file:
cdaDirChar	lib/cda.c	/^char cdaDirChar(struct cdaAli *cda, char chromStrand)$/;"	f
cdaFixChromStartEnd	lib/cda.c	/^void cdaFixChromStartEnd(struct cdaAli *cda)$/;"	f
cdaFreeAli	lib/cda.c	/^void cdaFreeAli(struct cdaAli *ca)$/;"	f
cdaFreeAliList	lib/cda.c	/^void cdaFreeAliList(struct cdaAli **pList)$/;"	f
cdaLoadOne	lib/cda.c	/^struct cdaAli *cdaLoadOne(FILE *f)$/;"	f
cdaLoadString	lib/cda.c	/^char *cdaLoadString(FILE *f)$/;"	f
cdaOpenVerify	lib/cda.c	/^FILE *cdaOpenVerify(char *fileName)$/;"	f
cdaRcList	lib/cda.c	/^void cdaRcList(struct cdaAli *cdaList, int dnaStart, int baseCount)$/;"	f
cdaRcOne	lib/cda.c	/^void cdaRcOne(struct cdaAli *cda, int dnaStart, int baseCount)$/;"	f
cdaReadBlock	lib/cda.c	/^void cdaReadBlock(FILE *f, struct cdaBlock *block)$/;"	f
cdaShowAlignmentTrack	lib/cda.c	/^void cdaShowAlignmentTrack(struct memGfx *mg, $/;"	f
cdaWrite	lib/cda.c	/^void cdaWrite(char *fileName, struct cdaAli *cdaList)$/;"	f
cdaWriteBlock	lib/cda.c	/^static void cdaWriteBlock(FILE *f, struct cdaBlock *block)$/;"	f	file:
cdaWriteOne	lib/cda.c	/^static void cdaWriteOne(FILE *f, struct cdaAli *ca)$/;"	f	file:
cdaWriteString	lib/cda.c	/^static void cdaWriteString(FILE *f, char *s)$/;"	f	file:
cddDesc	hg/inc/cddDesc.h	/^struct cddDesc$/;"	s
cddDescCommaIn	hg/lib/cddDesc.c	/^struct cddDesc *cddDescCommaIn(char **pS, struct cddDesc *ret)$/;"	f
cddDescCommaOut	hg/inc/cddDesc.h	60;"	d
cddDescFree	hg/lib/cddDesc.c	/^void cddDescFree(struct cddDesc **pEl)$/;"	f
cddDescFreeList	hg/lib/cddDesc.c	/^void cddDescFreeList(struct cddDesc **pList)$/;"	f
cddDescLoad	hg/lib/cddDesc.c	/^struct cddDesc *cddDescLoad(char **row)$/;"	f
cddDescLoadAll	hg/lib/cddDesc.c	/^struct cddDesc *cddDescLoadAll(char *fileName) $/;"	f
cddDescLoadAllByChar	hg/lib/cddDesc.c	/^struct cddDesc *cddDescLoadAllByChar(char *fileName, char chopper) $/;"	f
cddDescLoadAllByTab	hg/inc/cddDesc.h	38;"	d
cddDescOutput	hg/lib/cddDesc.c	/^void cddDescOutput(struct cddDesc *el, FILE *f, char sep, char lastSep) $/;"	f
cddDescStaticLoad	hg/lib/cddDesc.c	/^void cddDescStaticLoad(char **row, struct cddDesc *ret)$/;"	f
cddDescTabOut	hg/inc/cddDesc.h	57;"	d
cddInfo	hg/inc/cddInfo.h	/^struct cddInfo$/;"	s
cddInfoCommaIn	hg/lib/cddInfo.c	/^struct cddInfo *cddInfoCommaIn(char **pS, struct cddInfo *ret)$/;"	f
cddInfoCommaOut	hg/inc/cddInfo.h	65;"	d
cddInfoFree	hg/lib/cddInfo.c	/^void cddInfoFree(struct cddInfo **pEl)$/;"	f
cddInfoFreeList	hg/lib/cddInfo.c	/^void cddInfoFreeList(struct cddInfo **pList)$/;"	f
cddInfoLoad	hg/lib/cddInfo.c	/^struct cddInfo *cddInfoLoad(char **row)$/;"	f
cddInfoLoadAll	hg/lib/cddInfo.c	/^struct cddInfo *cddInfoLoadAll(char *fileName) $/;"	f
cddInfoLoadAllByChar	hg/lib/cddInfo.c	/^struct cddInfo *cddInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
cddInfoLoadAllByTab	hg/inc/cddInfo.h	43;"	d
cddInfoOutput	hg/lib/cddInfo.c	/^void cddInfoOutput(struct cddInfo *el, FILE *f, char sep, char lastSep) $/;"	f
cddInfoStaticLoad	hg/lib/cddInfo.c	/^void cddInfoStaticLoad(char **row, struct cddInfo *ret)$/;"	f
cddInfoTabOut	hg/inc/cddInfo.h	62;"	d
cdddesc	hg/inc/cddDesc.h	/^    char *cdddesc;	\/* descriptive name *\/$/;"	m	struct:cddDesc
cddid	hg/inc/cddDesc.h	/^    unsigned cddid;	\/* identifier *\/$/;"	m	struct:cddDesc
cddlength	hg/inc/cddDesc.h	/^    unsigned cddlength;	\/* length *\/$/;"	m	struct:cddDesc
cddname	hg/inc/cddDesc.h	/^    char *cddname;	\/* Name of domain *\/$/;"	m	struct:cddDesc
cdna	hg/inc/ispyTables.h	/^struct cdna$/;"	s
cdnaCommaIn	hg/lib/ispyTables.c	/^struct cdna *cdnaCommaIn(char **pS, struct cdna *ret)$/;"	f
cdnaCommaOut	hg/inc/ispyTables.h	763;"	d
cdnaDir	lib/wormdna.c	/^static char *cdnaDir = NULL;$/;"	v	file:
cdnaFa	lib/wormdna.c	/^static FILE *cdnaFa = NULL;$/;"	v	file:
cdnaFree	hg/lib/ispyTables.c	/^void cdnaFree(struct cdna **pEl)$/;"	f
cdnaFreeList	hg/lib/ispyTables.c	/^void cdnaFreeList(struct cdna **pList)$/;"	f
cdnaLoadAll	hg/lib/ispyTables.c	/^struct cdna *cdnaLoadAll(char *fileName) $/;"	f
cdnaLoadAllByChar	hg/lib/ispyTables.c	/^struct cdna *cdnaLoadAllByChar(char *fileName, char chopper) $/;"	f
cdnaLoadAllByTab	hg/inc/ispyTables.h	716;"	d
cdnaLoadByQuery	hg/lib/ispyTables.c	/^struct cdna *cdnaLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
cdnaLoadWithNull	hg/lib/ispyTables.c	/^struct cdna *cdnaLoadWithNull(char **row)$/;"	f
cdnaOutput	hg/lib/ispyTables.c	/^void cdnaOutput(struct cdna *el, FILE *f, char sep, char lastSep) $/;"	f
cdnaSaveToDb	hg/lib/ispyTables.c	/^void cdnaSaveToDb(struct sqlConnection *conn, struct cdna *el, char *tableName, int updateSize)$/;"	f
cdnaSaveToDbEscaped	hg/lib/ispyTables.c	/^void cdnaSaveToDbEscaped(struct sqlConnection *conn, struct cdna *el, char *tableName, int updateSize)$/;"	f
cdnaSnof	lib/wormdna.c	/^static struct snof *cdnaSnof = NULL;$/;"	v	typeref:struct:snof	file:
cdnaStaticLoadWithNull	hg/lib/ispyTables.c	/^void cdnaStaticLoadWithNull(char **row, struct cdna *ret)$/;"	f
cdnaTabOut	hg/inc/ispyTables.h	760;"	d
cdna_clone	hg/inc/bdgpGeneInfo.h	/^    char *cdna_clone;	\/* comma-sep list of cdna clone IDs *\/$/;"	m	struct:bdgpGeneInfo
cdoSig	inc/sig.h	19;"	d
cds	hg/inc/affyAllExonProbe.h	/^    unsigned cds;	\/* ??? Yes or No *\/$/;"	m	struct:affyAllExonProbe
cds	hg/inc/cdsSpec.h	/^    char *cds;	\/* CDS specification, in NCBI format. *\/$/;"	m	struct:cdsSpec
cds	hg/inc/transMapGene.h	/^    char *cds;	\/* CDS specification, in NCBI format. *\/$/;"	m	struct:transMapGene
cdsComplete	hg/inc/genePred.h	/^    cdsComplete,    \/* "cmpl" - CDS is complete at this end  *\/$/;"	e	enum:cdsStatus
cdsCount	hg/inc/cdsEvidence.h	/^    int cdsCount;	\/* Number of CDS blocks *\/$/;"	m	struct:cdsEvidence
cdsEnd	hg/inc/borf.h	/^    int cdsEnd;	\/* End of cds (non-exclusive) *\/$/;"	m	struct:borf
cdsEnd	hg/inc/genePred.h	/^    unsigned cdsEnd;	\/* Coding region end *\/$/;"	m	struct:genePred
cdsEnd	hg/inc/sangerGene.h	/^    unsigned cdsEnd;	\/* Coding region end *\/$/;"	m	struct:sangerGene
cdsEnd	inc/wormdna.h	/^    int cdsStart, cdsEnd;       \/* Start and stop of coding region within cDNA. *\/$/;"	m	struct:wormCdnaInfo
cdsEndBac	hg/inc/hgGene.h	/^    unsigned cdsEndBac;	\/* End of coding region. *\/$/;"	m	struct:hgTranscript
cdsEndBac	inc/hgGene.h	/^    unsigned cdsEndBac;	\/* End of coding region. *\/$/;"	m	struct:hgTranscript
cdsEndField	hg/inc/hdb.h	/^    char cdsEndField[HDB_MAX_FIELD_STRING];	\/* Name of cds(thick)End field. *\/$/;"	m	struct:hTableInfo
cdsEndPos	hg/inc/hgGene.h	/^    unsigned cdsEndPos;	\/* End of coding region. *\/$/;"	m	struct:hgTranscript
cdsEndPos	inc/hgGene.h	/^    unsigned cdsEndPos;	\/* End of coding region. *\/$/;"	m	struct:hgTranscript
cdsEndStat	hg/inc/genePred.h	/^    enum cdsStatus cdsEndStat;    \/* Status of cdsEnd annotation *\/$/;"	m	struct:genePred	typeref:enum:genePred::cdsStatus
cdsEvidence	hg/inc/cdsEvidence.h	/^struct cdsEvidence$/;"	s
cdsEvidenceCmpScore	hg/lib/cdsEvidence.c	/^int cdsEvidenceCmpScore(const void *va, const void *vb)$/;"	f
cdsEvidenceCommaIn	hg/lib/cdsEvidence.c	/^struct cdsEvidence *cdsEvidenceCommaIn(char **pS, struct cdsEvidence *ret)$/;"	f
cdsEvidenceCommaOut	hg/inc/cdsEvidence.h	65;"	d
cdsEvidenceFree	hg/lib/cdsEvidence.c	/^void cdsEvidenceFree(struct cdsEvidence **pEl)$/;"	f
cdsEvidenceFreeList	hg/lib/cdsEvidence.c	/^void cdsEvidenceFreeList(struct cdsEvidence **pList)$/;"	f
cdsEvidenceLoad	hg/lib/cdsEvidence.c	/^struct cdsEvidence *cdsEvidenceLoad(char **row)$/;"	f
cdsEvidenceLoadAll	hg/lib/cdsEvidence.c	/^struct cdsEvidence *cdsEvidenceLoadAll(char *fileName) $/;"	f
cdsEvidenceLoadAllByChar	hg/lib/cdsEvidence.c	/^struct cdsEvidence *cdsEvidenceLoadAllByChar(char *fileName, char chopper) $/;"	f
cdsEvidenceLoadAllByTab	hg/inc/cdsEvidence.h	43;"	d
cdsEvidenceOutput	hg/lib/cdsEvidence.c	/^void cdsEvidenceOutput(struct cdsEvidence *el, FILE *f, char sep, char lastSep) $/;"	f
cdsEvidenceReadAllIntoHash	hg/lib/cdsEvidence.c	/^struct hash *cdsEvidenceReadAllIntoHash(char *fileName)$/;"	f
cdsEvidenceSetBedThick	hg/lib/cdsEvidence.c	/^void cdsEvidenceSetBedThick(struct cdsEvidence *cds, struct bed *bed,$/;"	f
cdsEvidenceTabOut	hg/inc/cdsEvidence.h	62;"	d
cdsGap	hg/inc/geneCheck.h	/^    unsigned cdsGap;	\/* number of gaps in CDS *\/$/;"	m	struct:geneCheck
cdsIncomplete	hg/inc/genePred.h	/^    cdsIncomplete,  \/* "incmpl" - CDS is not complete at this end  *\/$/;"	e	enum:cdsStatus
cdsMult3Gap	hg/inc/geneCheck.h	/^    unsigned cdsMult3Gap;	\/* number of CDS gaps that are a multiple of 3 *\/$/;"	m	struct:geneCheck
cdsNone	hg/inc/genePred.h	/^    cdsNone,        \/* "none" - No CDS (non-coding)  *\/$/;"	e	enum:cdsStatus
cdsOrtho	hg/inc/cdsOrtho.h	/^struct cdsOrtho$/;"	s
cdsOrthoCommaIn	hg/lib/cdsOrtho.c	/^struct cdsOrtho *cdsOrthoCommaIn(char **pS, struct cdsOrtho *ret)$/;"	f
cdsOrthoCommaOut	hg/inc/cdsOrtho.h	62;"	d
cdsOrthoFree	hg/lib/cdsOrtho.c	/^void cdsOrthoFree(struct cdsOrtho **pEl)$/;"	f
cdsOrthoFreeList	hg/lib/cdsOrtho.c	/^void cdsOrthoFreeList(struct cdsOrtho **pList)$/;"	f
cdsOrthoLoad	hg/lib/cdsOrtho.c	/^struct cdsOrtho *cdsOrthoLoad(char **row)$/;"	f
cdsOrthoLoadAll	hg/lib/cdsOrtho.c	/^struct cdsOrtho *cdsOrthoLoadAll(char *fileName) $/;"	f
cdsOrthoLoadAllByChar	hg/lib/cdsOrtho.c	/^struct cdsOrtho *cdsOrthoLoadAllByChar(char *fileName, char chopper) $/;"	f
cdsOrthoLoadAllByTab	hg/inc/cdsOrtho.h	40;"	d
cdsOrthoOutput	hg/lib/cdsOrtho.c	/^void cdsOrthoOutput(struct cdsOrtho *el, FILE *f, char sep, char lastSep) $/;"	f
cdsOrthoStaticLoad	hg/lib/cdsOrtho.c	/^void cdsOrthoStaticLoad(char **row, struct cdsOrtho *ret)$/;"	f
cdsOrthoTabOut	hg/inc/cdsOrtho.h	59;"	d
cdsPick	hg/inc/cdsPick.h	/^struct cdsPick$/;"	s
cdsPickCommaIn	hg/lib/cdsPick.c	/^struct cdsPick *cdsPickCommaIn(char **pS, struct cdsPick *ret)$/;"	f
cdsPickCommaOut	hg/inc/cdsPick.h	66;"	d
cdsPickFree	hg/lib/cdsPick.c	/^void cdsPickFree(struct cdsPick **pEl)$/;"	f
cdsPickFreeList	hg/lib/cdsPick.c	/^void cdsPickFreeList(struct cdsPick **pList)$/;"	f
cdsPickLoad	hg/lib/cdsPick.c	/^struct cdsPick *cdsPickLoad(char **row)$/;"	f
cdsPickLoadAll	hg/lib/cdsPick.c	/^struct cdsPick *cdsPickLoadAll(char *fileName) $/;"	f
cdsPickLoadAllByChar	hg/lib/cdsPick.c	/^struct cdsPick *cdsPickLoadAllByChar(char *fileName, char chopper) $/;"	f
cdsPickLoadAllByTab	hg/inc/cdsPick.h	44;"	d
cdsPickOutput	hg/lib/cdsPick.c	/^void cdsPickOutput(struct cdsPick *el, FILE *f, char sep, char lastSep) $/;"	f
cdsPickStaticLoad	hg/lib/cdsPick.c	/^void cdsPickStaticLoad(char **row, struct cdsPick *ret)$/;"	f
cdsPickTabOut	hg/inc/cdsPick.h	63;"	d
cdsPosition	hg/inc/soterm.h	/^	    uint cdsPosition;$/;"	m	struct:soCall::__anon12::codingChange
cdsQualifier	hg/lib/featureBits.c	/^static boolean cdsQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
cdsRefSyn	hg/lib/snp125Ui.c	/^static char *cdsRefSyn[] =$/;"	v	file:
cdsScore	hg/inc/txInfo.h	/^    double cdsScore;	\/* Score of best CDS according to txCdsPredict *\/$/;"	m	struct:txInfo
cdsSim	hg/inc/geneSimilarities.h	/^    boolean cdsSim;                \/\/ CDS or exon similarity?$/;"	m	struct:geneSimilarities
cdsSimilarity	hg/inc/ccdsGeneMap.h	/^    float cdsSimilarity;	\/* CDS similarity by genomic overlap *\/$/;"	m	struct:ccdsGeneMap
cdsSingleInIntron	hg/inc/txInfo.h	/^    unsigned char cdsSingleInIntron;	\/* True if CDS is single exon and in intron of other transcript. *\/$/;"	m	struct:txInfo
cdsSingleInUtr3	hg/inc/txInfo.h	/^    unsigned char cdsSingleInUtr3;	\/* True if CDS is single exon and in 3' UTR of other transcript. *\/$/;"	m	struct:txInfo
cdsSize	hg/inc/borf.h	/^    int cdsSize;	\/* Size of cds in bases *\/$/;"	m	struct:borf
cdsSizes	hg/inc/cdsEvidence.h	/^    int *cdsSizes;	\/* Sizes of CDS blocks *\/$/;"	m	struct:cdsEvidence
cdsSpec	hg/inc/cdsSpec.h	/^struct cdsSpec$/;"	s
cdsSpecCommaIn	hg/lib/cdsSpec.c	/^struct cdsSpec *cdsSpecCommaIn(char **pS, struct cdsSpec *ret)$/;"	f
cdsSpecCommaOut	hg/inc/cdsSpec.h	56;"	d
cdsSpecFree	hg/lib/cdsSpec.c	/^void cdsSpecFree(struct cdsSpec **pEl)$/;"	f
cdsSpecFreeList	hg/lib/cdsSpec.c	/^void cdsSpecFreeList(struct cdsSpec **pList)$/;"	f
cdsSpecLoad	hg/lib/cdsSpec.c	/^struct cdsSpec *cdsSpecLoad(char **row)$/;"	f
cdsSpecLoadAll	hg/lib/cdsSpec.c	/^struct cdsSpec *cdsSpecLoadAll(char *fileName) $/;"	f
cdsSpecLoadAllByChar	hg/lib/cdsSpec.c	/^struct cdsSpec *cdsSpecLoadAllByChar(char *fileName, char chopper) $/;"	f
cdsSpecLoadAllByTab	hg/inc/cdsSpec.h	34;"	d
cdsSpecOutput	hg/lib/cdsSpec.c	/^void cdsSpecOutput(struct cdsSpec *el, FILE *f, char sep, char lastSep) $/;"	f
cdsSpecStaticLoad	hg/lib/cdsSpec.c	/^void cdsSpecStaticLoad(char **row, struct cdsSpec *ret)$/;"	f
cdsSpecTabOut	hg/inc/cdsSpec.h	53;"	d
cdsSplice	hg/inc/geneCheck.h	/^    unsigned cdsSplice;	\/* number of CDS introns with unknown splice sites *\/$/;"	m	struct:geneCheck
cdsStart	hg/inc/borf.h	/^    int cdsStart;	\/* Start of cds (starting with 0) *\/$/;"	m	struct:borf
cdsStart	hg/inc/genePred.h	/^    unsigned cdsStart;	\/* Coding region start *\/$/;"	m	struct:genePred
cdsStart	hg/inc/sangerGene.h	/^    unsigned cdsStart;	\/* Coding region start *\/$/;"	m	struct:sangerGene
cdsStart	inc/wormdna.h	/^    int cdsStart, cdsEnd;       \/* Start and stop of coding region within cDNA. *\/$/;"	m	struct:wormCdnaInfo
cdsStartBac	hg/inc/hgGene.h	/^    unsigned cdsStartBac;	\/* Start of coding region. *\/$/;"	m	struct:hgTranscript
cdsStartBac	inc/hgGene.h	/^    unsigned cdsStartBac;	\/* Start of coding region. *\/$/;"	m	struct:hgTranscript
cdsStartField	hg/inc/hdb.h	/^    char cdsStartField[HDB_MAX_FIELD_STRING];	\/* Name of cds(thick)Start field. *\/$/;"	m	struct:hTableInfo
cdsStartPos	hg/inc/hgGene.h	/^    unsigned cdsStartPos;	\/* Start of coding region. *\/$/;"	m	struct:hgTranscript
cdsStartPos	inc/hgGene.h	/^    unsigned cdsStartPos;	\/* Start of coding region. *\/$/;"	m	struct:hgTranscript
cdsStartStat	hg/inc/genePred.h	/^    enum cdsStatus cdsStartStat;  \/* Status of cdsStart annotation *\/$/;"	m	struct:genePred	typeref:enum:genePred::cdsStatus
cdsStarts	hg/inc/cdsEvidence.h	/^    int *cdsStarts;	\/* Start positions of CDS blocks *\/$/;"	m	struct:cdsEvidence
cdsStatFieldSql	hg/lib/genePred.c	/^static char *cdsStatFieldSql = $/;"	v	file:
cdsStatus	hg/inc/genePred.h	/^enum cdsStatus$/;"	g
cdsType	hg/inc/sanger22extra.h	/^    char *cdsType;	\/* Type field from Sanger CDS GFFs *\/$/;"	m	struct:sanger22extra
cdsUnknown	hg/inc/genePred.h	/^    cdsUnknown,     \/* "unk" - CDS is unknown (coding, but not known)  *\/$/;"	e	enum:cdsStatus
celeraCoverage	hg/inc/celeraCoverage.h	/^struct celeraCoverage$/;"	s
celeraCoverageCommaIn	hg/lib/celeraCoverage.c	/^struct celeraCoverage *celeraCoverageCommaIn(char **pS, struct celeraCoverage *ret)$/;"	f
celeraCoverageCommaOut	hg/inc/celeraCoverage.h	53;"	d
celeraCoverageFree	hg/lib/celeraCoverage.c	/^void celeraCoverageFree(struct celeraCoverage **pEl)$/;"	f
celeraCoverageFreeList	hg/lib/celeraCoverage.c	/^void celeraCoverageFreeList(struct celeraCoverage **pList)$/;"	f
celeraCoverageLoad	hg/lib/celeraCoverage.c	/^struct celeraCoverage *celeraCoverageLoad(char **row)$/;"	f
celeraCoverageLoadAll	hg/lib/celeraCoverage.c	/^struct celeraCoverage *celeraCoverageLoadAll(char *fileName) $/;"	f
celeraCoverageLoadWhere	hg/lib/celeraCoverage.c	/^struct celeraCoverage *celeraCoverageLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
celeraCoverageOutput	hg/lib/celeraCoverage.c	/^void celeraCoverageOutput(struct celeraCoverage *el, FILE *f, char sep, char lastSep) $/;"	f
celeraCoverageStaticLoad	hg/lib/celeraCoverage.c	/^void celeraCoverageStaticLoad(char **row, struct celeraCoverage *ret)$/;"	f
celeraCoverageTabOut	hg/inc/celeraCoverage.h	50;"	d
celeraDupPositive	hg/inc/celeraDupPositive.h	/^struct celeraDupPositive$/;"	s
celeraDupPositiveCommaIn	hg/lib/celeraDupPositive.c	/^struct celeraDupPositive *celeraDupPositiveCommaIn(char **pS, struct celeraDupPositive *ret)$/;"	f
celeraDupPositiveCommaOut	hg/inc/celeraDupPositive.h	48;"	d
celeraDupPositiveFree	hg/lib/celeraDupPositive.c	/^void celeraDupPositiveFree(struct celeraDupPositive **pEl)$/;"	f
celeraDupPositiveFreeList	hg/lib/celeraDupPositive.c	/^void celeraDupPositiveFreeList(struct celeraDupPositive **pList)$/;"	f
celeraDupPositiveLoad	hg/lib/celeraDupPositive.c	/^struct celeraDupPositive *celeraDupPositiveLoad(char **row)$/;"	f
celeraDupPositiveOutput	hg/lib/celeraDupPositive.c	/^void celeraDupPositiveOutput(struct celeraDupPositive *el, FILE *f, char sep, char lastSep)$/;"	f
celeraDupPositiveStaticLoad	hg/lib/celeraDupPositive.c	/^void celeraDupPositiveStaticLoad(char **row, struct celeraDupPositive *ret)$/;"	f
celeraDupPositiveTabOut	hg/inc/celeraDupPositive.h	45;"	d
cell2L	lib/axtAffine.c	/^struct cell2L $/;"	s	file:
cells	inc/pairHmm.h	/^    struct phmmMommy *cells;	\/* The 2-D array containing traceback info. *\/$/;"	m	struct:phmmState	typeref:struct:phmmState::phmmMommy
cellsInRow	inc/spaceSaver.h	/^    int cellsInRow;           \/* Number of cells per row. *\/$/;"	m	struct:spaceSaver
center	hg/inc/alleleFreqs.h	/^    char *center;	\/*  center		bcm *\/$/;"	m	struct:alleleFreqs
center	hg/inc/genotype.h	/^    char *center;	\/*  center	# illumina *\/$/;"	m	struct:genotype
center	hg/inc/genotypeFreqs.h	/^    char *center;	\/* center		bcm *\/$/;"	m	struct:genotypeFreqs
center	hg/inc/hapmapAlleleFreq.h	/^    char *center;	\/* Sequencing center *\/$/;"	m	struct:hapmapAlleleFreq
centralArchiveCc	hg/lib/hdb.c	/^static struct sqlConnCache *centralArchiveCc = NULL;$/;"	v	typeref:struct:sqlConnCache	file:
centralArchiveDb	hg/lib/hdb.c	/^static char *centralArchiveDb = NULL;$/;"	v	file:
centralCc	hg/lib/hdb.c	/^static struct sqlConnCache *centralCc = NULL;$/;"	v	typeref:struct:sqlConnCache	file:
centralDb	hg/lib/hdb.c	/^static char *centralDb = NULL;$/;"	v	file:
ceuAlleleFreq	hg/inc/pgSiftPred.h	/^    char *ceuAlleleFreq;	\/* Caucasian allele frequencies *\/$/;"	m	struct:pgSiftPred
cfgBam	hg/inc/trackDb.h	/^    cfgBam      =9,$/;"	e	enum:_eCfgType
cfgBedFilt	hg/inc/trackDb.h	/^    cfgBedFilt  =8,$/;"	e	enum:_eCfgType
cfgBedScore	hg/inc/trackDb.h	/^    cfgBedScore =1,$/;"	e	enum:_eCfgType
cfgBeginBoxAndTitle	hg/lib/hui.c	/^boolean cfgBeginBoxAndTitle(struct trackDb *tdb, boolean boxed, char *title)$/;"	f
cfgByCfgType	hg/lib/hui.c	/^void cfgByCfgType(eCfgType cType,char *db, struct cart *cart, struct trackDb *tdb,char *prefix, char *title, boolean boxed)$/;"	f
cfgChain	hg/inc/trackDb.h	/^    cfgChain    =6,$/;"	e	enum:_eCfgType
cfgEndBox	hg/lib/hui.c	/^void cfgEndBox(boolean boxed)$/;"	f
cfgGenePred	hg/inc/trackDb.h	/^    cfgGenePred =5,$/;"	e	enum:_eCfgType
cfgLinkToDependentCfgs	hg/lib/hui.c	/^static void cfgLinkToDependentCfgs(struct cart *cart, struct trackDb *tdb,char *prefix)$/;"	f	file:
cfgModTime	hg/lib/hgConfig.c	/^unsigned long cfgModTime()$/;"	f
cfgNames	hg/lib/hgConfig.c	/^struct slName *cfgNames()$/;"	f
cfgNamesWithPrefix	hg/lib/hgConfig.c	/^struct slName *cfgNamesWithPrefix(char* prefix)$/;"	f
cfgNetAlign	hg/inc/trackDb.h	/^    cfgNetAlign =7,$/;"	e	enum:_eCfgType
cfgNone	hg/inc/trackDb.h	/^    cfgNone     =0,$/;"	e	enum:_eCfgType
cfgOption	hg/lib/hgConfig.c	/^char* cfgOption(char* name)$/;"	f
cfgOption2	hg/lib/hgConfig.c	/^char *cfgOption2(char *prefix, char *suffix)$/;"	f
cfgOptionBooleanDefault	hg/lib/hgConfig.c	/^boolean cfgOptionBooleanDefault(char* name, boolean def)$/;"	f
cfgOptionDefault	hg/lib/hgConfig.c	/^char *cfgOptionDefault(char* name, char* def)$/;"	f
cfgOptionDefault2	hg/lib/hgConfig.c	/^char* cfgOptionDefault2(char *prefix, char *suffix, char* def)$/;"	f
cfgOptionEnv	hg/lib/hgConfig.c	/^char *cfgOptionEnv(char *envName, char* name)$/;"	f
cfgOptionEnvDefault	hg/lib/hgConfig.c	/^char *cfgOptionEnvDefault(char *envName, char* name, char *def)$/;"	f
cfgOptionsHash	hg/lib/hgConfig.c	/^static struct hash* cfgOptionsHash = NULL;$/;"	v	typeref:struct:hash	file:
cfgPeak	hg/inc/trackDb.h	/^    cfgPeak     =4,$/;"	e	enum:_eCfgType
cfgPsl	hg/inc/trackDb.h	/^    cfgPsl      =10,$/;"	e	enum:_eCfgType
cfgTypeFromTdb	hg/lib/trackDbCustom.c	/^eCfgType cfgTypeFromTdb(struct trackDb *tdb, boolean warnIfNecessary)$/;"	f
cfgUndetermined	hg/inc/trackDb.h	/^    cfgUndetermined \/\/ Not specifically denied, but not determinable in lib code$/;"	e	enum:_eCfgType
cfgVal	hg/lib/hgConfig.c	/^char *cfgVal(char *name)$/;"	f
cfgVcf	hg/inc/trackDb.h	/^    cfgVcf      =11,$/;"	e	enum:_eCfgType
cfgWig	hg/inc/trackDb.h	/^    cfgWig      =2,$/;"	e	enum:_eCfgType
cfgWigMaf	hg/inc/trackDb.h	/^    cfgWigMaf   =3,$/;"	e	enum:_eCfgType
cfm	inc/seqOut.h	/^struct cfm$/;"	s
cfmFree	lib/seqOut.c	/^void cfmFree(struct cfm **pCfm)$/;"	f
cfmNew	lib/seqOut.c	/^struct cfm *cfmNew(int wordLen, int lineLen,$/;"	f
cfmOut	lib/seqOut.c	/^void cfmOut(struct cfm *cfm, char c, int color)$/;"	f
cfmOutExt	lib/seqOut.c	/^void cfmOutExt(struct cfm *cfm, char c, int color, boolean underline, boolean bold, boolean italic)$/;"	f
cfmPopFormat	lib/seqOut.c	/^static void cfmPopFormat(struct cfm *cfm)$/;"	f	file:
cfmPushFormat	lib/seqOut.c	/^static void cfmPushFormat(struct cfm *cfm)$/;"	f	file:
cftIgnore	hg/inc/bed.h	/^    cftIgnore = 0,$/;"	e	enum:charFilterType
cftMultiLiteral	hg/inc/bed.h	/^    cftMultiLiteral = 2,$/;"	e	enum:charFilterType
cftSingleLiteral	hg/inc/bed.h	/^    cftSingleLiteral = 1,$/;"	e	enum:charFilterType
cgList	hg/lib/chromGraphFactory.c	/^    struct chromGraph *cgList;	\/* List of associated chrom graphs *\/$/;"	m	struct:labeledFile	typeref:struct:labeledFile::chromGraph	file:
cgbChrom	hg/inc/chromGraph.h	/^struct cgbChrom$/;"	s
cgbChromFree	hg/lib/chromGraph.c	/^void cgbChromFree(struct cgbChrom **pChrom)$/;"	f
cgbChromFreeList	hg/lib/chromGraph.c	/^void cgbChromFreeList(struct cgbChrom **pList)$/;"	f
cgfColLabelFirstRow	hg/inc/chromGraphFactory.h	43;"	d
cgfColLabelGuess	hg/inc/chromGraphFactory.h	41;"	d
cgfColLabelNumbered	hg/inc/chromGraphFactory.h	42;"	d
cgfFormatComma	hg/inc/chromGraphFactory.h	37;"	d
cgfFormatGuess	hg/inc/chromGraphFactory.h	35;"	d
cgfFormatSpace	hg/inc/chromGraphFactory.h	38;"	d
cgfFormatTab	hg/inc/chromGraphFactory.h	36;"	d
cgfMarkerAffy100	hg/inc/chromGraphFactory.h	22;"	d
cgfMarkerAffy500	hg/inc/chromGraphFactory.h	23;"	d
cgfMarkerAffy6	hg/inc/chromGraphFactory.h	24;"	d
cgfMarkerAffy6SV	hg/inc/chromGraphFactory.h	25;"	d
cgfMarkerAgilentCgh244A	hg/inc/chromGraphFactory.h	32;"	d
cgfMarkerGenomic	hg/inc/chromGraphFactory.h	19;"	d
cgfMarkerGuess	hg/inc/chromGraphFactory.h	18;"	d
cgfMarkerHumanHap1M	hg/inc/chromGraphFactory.h	30;"	d
cgfMarkerHumanHap300	hg/inc/chromGraphFactory.h	27;"	d
cgfMarkerHumanHap550	hg/inc/chromGraphFactory.h	28;"	d
cgfMarkerHumanHap650	hg/inc/chromGraphFactory.h	29;"	d
cgfMarkerSnp	hg/inc/chromGraphFactory.h	21;"	d
cgfMarkerSts	hg/inc/chromGraphFactory.h	20;"	d
cgh	hg/inc/cgh.h	/^struct cgh$/;"	s
cghCommaIn	hg/lib/cgh.c	/^struct cgh *cghCommaIn(char **pS, struct cgh *ret)$/;"	f
cghCommaOut	hg/inc/cgh.h	53;"	d
cghFree	hg/lib/cgh.c	/^void cghFree(struct cgh **pEl)$/;"	f
cghFreeList	hg/lib/cgh.c	/^void cghFreeList(struct cgh **pList)$/;"	f
cghLoad	hg/lib/cgh.c	/^struct cgh *cghLoad(char **row)$/;"	f
cghLoadAll	hg/lib/cgh.c	/^struct cgh *cghLoadAll(char *fileName) $/;"	f
cghNci60OptEnum	hg/inc/hui.h	/^enum cghNci60OptEnum {$/;"	g
cghNci60Options	hg/lib/hui.c	/^static char *cghNci60Options[] = {$/;"	v	file:
cghOutput	hg/lib/cgh.c	/^void cghOutput(struct cgh *el, FILE *f, char sep, char lastSep) $/;"	f
cghStaticLoad	hg/lib/cgh.c	/^void cghStaticLoad(char **row, struct cgh *ret)$/;"	f
cghTabOut	hg/inc/cgh.h	50;"	d
cghoeAll	hg/inc/hui.h	/^   cghoeAll = 10,$/;"	e	enum:cghNci60OptEnum
cghoeBreast	hg/inc/hui.h	/^   cghoeBreast = 1,$/;"	e	enum:cghNci60OptEnum
cghoeCns	hg/inc/hui.h	/^   cghoeCns = 2,$/;"	e	enum:cghNci60OptEnum
cghoeColon	hg/inc/hui.h	/^   cghoeColon = 3,$/;"	e	enum:cghNci60OptEnum
cghoeDropDown	hg/lib/hui.c	/^void cghoeDropDown(char *var, char *curVal)$/;"	f
cghoeEnumToString	hg/lib/hui.c	/^char *cghoeEnumToString(enum cghNci60OptEnum x)$/;"	f
cghoeLeukemia	hg/inc/hui.h	/^   cghoeLeukemia = 4,$/;"	e	enum:cghNci60OptEnum
cghoeLung	hg/inc/hui.h	/^   cghoeLung = 5,$/;"	e	enum:cghNci60OptEnum
cghoeMelanoma	hg/inc/hui.h	/^   cghoeMelanoma = 6,$/;"	e	enum:cghNci60OptEnum
cghoeOvary	hg/inc/hui.h	/^   cghoeOvary = 7,$/;"	e	enum:cghNci60OptEnum
cghoeProstate	hg/inc/hui.h	/^   cghoeProstate = 8,$/;"	e	enum:cghNci60OptEnum
cghoeRenal	hg/inc/hui.h	/^   cghoeRenal = 9,$/;"	e	enum:cghNci60OptEnum
cghoeStringToEnum	hg/lib/hui.c	/^enum cghNci60OptEnum cghoeStringToEnum(char *string)$/;"	f
cghoeTissue	hg/inc/hui.h	/^   cghoeTissue = 0,$/;"	e	enum:cghNci60OptEnum
cgiApoptosis	hg/lib/web.c	/^static void cgiApoptosis(int status)$/;"	f	file:
cgiBadVar	lib/cheapcgi.c	/^void cgiBadVar(char *varName)$/;"	f
cgiBoolean	lib/cheapcgi.c	/^boolean cgiBoolean(char *varName)$/;"	f
cgiBooleanDefined	lib/cheapcgi.c	/^boolean cgiBooleanDefined(char *name)$/;"	f
cgiBooleanShadowPrefix	lib/cheapcgi.c	/^char *cgiBooleanShadowPrefix()$/;"	f
cgiBrowser	inc/cheapcgi.h	120;"	d
cgiChoice	inc/cheapcgi.h	/^struct cgiChoice$/;"	s
cgiClientBrowser	lib/cheapcgi.c	/^enum browserType cgiClientBrowser(char **browserQualifier, enum osType *clientOs, char **clientOsQualifier)$/;"	f
cgiContinueAllVars	lib/cheapcgi.c	/^void cgiContinueAllVars()$/;"	f
cgiContinueHiddenVar	lib/cheapcgi.c	/^void cgiContinueHiddenVar(char *varName)$/;"	f
cgiDecode	lib/cheapcgi.c	/^void cgiDecode(char *in, char *out, int inLength)$/;"	f
cgiDir	lib/portimpl.c	/^char *cgiDir()$/;"	f
cgiDir	lib/portimpl.h	/^    char * (*cgiDir)();$/;"	m	struct:webServerSpecific
cgiDouble	lib/cheapcgi.c	/^double cgiDouble(char *varName)$/;"	f
cgiDown	lib/cheapcgi.c	/^void cgiDown(float lines)$/;"	f
cgiDropDownWithTextValsAndExtra	lib/cheapcgi.c	/^void cgiDropDownWithTextValsAndExtra(char *name, char *text[], char *values[],$/;"	f
cgiEncode	lib/cheapcgi.c	/^char *cgiEncode(char *inString)$/;"	f
cgiEncodeFull	lib/cheapcgi.c	/^char *cgiEncodeFull(char *inString)$/;"	f
cgiFromCommandLine	lib/cheapcgi.c	/^boolean cgiFromCommandLine(int *pArgc, char *argv[], boolean preferWeb)$/;"	f
cgiFromFile	lib/cheapcgi.c	/^boolean cgiFromFile(char *fileName)$/;"	f
cgiInputSource	lib/cheapcgi.c	/^static char *cgiInputSource(char *s)$/;"	f	file:
cgiInt	lib/cheapcgi.c	/^int cgiInt(char *varName)$/;"	f
cgiIntExp	lib/cheapcgi.c	/^int cgiIntExp(char *varName)$/;"	f
cgiIsOnWeb	lib/cheapcgi.c	/^boolean cgiIsOnWeb()$/;"	f
cgiMakeButton	lib/cheapcgi.c	/^void cgiMakeButton(char *name, char *value)$/;"	f
cgiMakeButtonWithMsg	lib/cheapcgi.c	/^void cgiMakeButtonWithMsg(char *name, char *value, char *msg)$/;"	f
cgiMakeButtonWithOnClick	lib/cheapcgi.c	/^void cgiMakeButtonWithOnClick(char *name, char *value, char *msg, char *onClick)$/;"	f
cgiMakeCheckAllSubmitButton	hg/lib/jsHelper.c	/^void cgiMakeCheckAllSubmitButton(char *name, char *value, char *id, char *idPrefix, boolean state)$/;"	f
cgiMakeCheckBox	lib/cheapcgi.c	/^void cgiMakeCheckBox(char *name, boolean checked)$/;"	f
cgiMakeCheckBox2Bool	lib/cheapcgi.c	/^static void cgiMakeCheckBox2Bool(char *name, boolean checked, boolean enabled, char *id, char *moreHtml)$/;"	f	file:
cgiMakeCheckBoxFourWay	lib/cheapcgi.c	/^void cgiMakeCheckBoxFourWay(char *name, boolean checked, boolean enabled, char *id, char *classes, char *moreHtml)$/;"	f
cgiMakeCheckBoxIdAndJS	lib/cheapcgi.c	/^void cgiMakeCheckBoxIdAndJS(char *name, boolean checked, char *id, char *javascript)$/;"	f
cgiMakeCheckBoxJS	lib/cheapcgi.c	/^void cgiMakeCheckBoxJS(char *name, boolean checked, char *javascript)$/;"	f
cgiMakeCheckBoxUtil	lib/cheapcgi.c	/^void cgiMakeCheckBoxUtil(char *name, boolean checked, char *msg, char *id)$/;"	f
cgiMakeCheckBoxWithId	lib/cheapcgi.c	/^void cgiMakeCheckBoxWithId(char *name, boolean checked, char *id)$/;"	f
cgiMakeCheckBoxWithMsg	lib/cheapcgi.c	/^void cgiMakeCheckBoxWithMsg(char *name, boolean checked, char *msg)$/;"	f
cgiMakeCheckboxGroup	lib/cheapcgi.c	/^void cgiMakeCheckboxGroup(char *name, char *menu[], int menuSize, struct slName *checked,$/;"	f
cgiMakeCheckboxGroupWithVals	lib/cheapcgi.c	/^void cgiMakeCheckboxGroupWithVals(char *name, char *menu[], char *values[], int menuSize,$/;"	f
cgiMakeClearButton	lib/cheapcgi.c	/^void cgiMakeClearButton(char *form, char *field)$/;"	f
cgiMakeDoubleVar	lib/cheapcgi.c	/^void cgiMakeDoubleVar(char *varName, double initialVal, int maxDigits)$/;"	f
cgiMakeDoubleVarInRange	lib/cheapcgi.c	/^void cgiMakeDoubleVarInRange(char *varName, double initialVal, char *title, int width, char *min, char *max)$/;"	f
cgiMakeDoubleVarNoLimits	inc/cheapcgi.h	306;"	d
cgiMakeDoubleVarWithLimits	lib/cheapcgi.c	/^void cgiMakeDoubleVarWithLimits(char *varName, double initialVal, char *title, int width, double min, double max)$/;"	f
cgiMakeDoubleVarWithMax	lib/cheapcgi.c	/^void cgiMakeDoubleVarWithMax(char *varName, double initialVal, char *title, int width, double max)$/;"	f
cgiMakeDoubleVarWithMin	lib/cheapcgi.c	/^void cgiMakeDoubleVarWithMin(char *varName, double initialVal, char *title, int width, double min)$/;"	f
cgiMakeDropList	lib/cheapcgi.c	/^void cgiMakeDropList(char *name, char *menu[], int menuSize, char *checked)$/;"	f
cgiMakeDropListClass	lib/cheapcgi.c	/^void cgiMakeDropListClass(char *name, char *menu[],$/;"	f
cgiMakeDropListClassWithStyle	lib/cheapcgi.c	/^void cgiMakeDropListClassWithStyle(char *name, char *menu[],$/;"	f
cgiMakeDropListClassWithStyleAndJavascript	lib/cheapcgi.c	/^void cgiMakeDropListClassWithStyleAndJavascript(char *name, char *menu[],$/;"	f
cgiMakeDropListFull	lib/cheapcgi.c	/^void cgiMakeDropListFull(char *name, char *menu[], char *values[],$/;"	f
cgiMakeDropListWithVals	lib/cheapcgi.c	/^void cgiMakeDropListWithVals(char *name, char *menu[], char *values[],$/;"	f
cgiMakeFileEntry	lib/cheapcgi.c	/^void cgiMakeFileEntry(char *name)$/;"	f
cgiMakeHiddenBoolean	lib/cheapcgi.c	/^void cgiMakeHiddenBoolean(char *name, boolean on)$/;"	f
cgiMakeHiddenVar	inc/cheapcgi.h	362;"	d
cgiMakeHiddenVarWithExtra	lib/cheapcgi.c	/^void cgiMakeHiddenVarWithExtra(char *varName, char *string,char *extra)$/;"	f
cgiMakeIntVar	lib/cheapcgi.c	/^void cgiMakeIntVar(char *varName, int initialVal, int maxDigits)$/;"	f
cgiMakeIntVarInRange	lib/cheapcgi.c	/^void cgiMakeIntVarInRange(char *varName, int initialVal, char *title, int width, char *min, char *max)$/;"	f
cgiMakeIntVarNoLimits	inc/cheapcgi.h	293;"	d
cgiMakeIntVarWithLimits	lib/cheapcgi.c	/^void cgiMakeIntVarWithLimits(char *varName, int initialVal, char *title, int width, int min, int max)$/;"	f
cgiMakeIntVarWithMax	lib/cheapcgi.c	/^void cgiMakeIntVarWithMax(char *varName, int initialVal, char *title, int width, int max)$/;"	f
cgiMakeIntVarWithMin	lib/cheapcgi.c	/^void cgiMakeIntVarWithMin(char *varName, int initialVal, char *title, int width, int min)$/;"	f
cgiMakeMultList	lib/cheapcgi.c	/^void cgiMakeMultList(char *name, char *menu[], int menuSize, struct slName *checked, int length)$/;"	f
cgiMakeMultiSelectDropList	inc/cheapcgi.h	342;"	d
cgiMakeOnClickButton	lib/cheapcgi.c	/^void cgiMakeOnClickButton(char *command, char *value)$/;"	f
cgiMakeOnClickRadioButton	lib/cheapcgi.c	/^void cgiMakeOnClickRadioButton(char *name, char *value, boolean checked,$/;"	f
cgiMakeOnClickSubmitButton	lib/cheapcgi.c	/^void cgiMakeOnClickSubmitButton(char *command, char *name, char *value)$/;"	f
cgiMakeOnKeypressTextVar	lib/cheapcgi.c	/^void cgiMakeOnKeypressTextVar(char *varName, char *initialVal, int charSize,$/;"	f
cgiMakeOptionalButton	lib/cheapcgi.c	/^void cgiMakeOptionalButton(char *name, char *value, boolean disabled)$/;"	f
cgiMakeRadioButton	lib/cheapcgi.c	/^void cgiMakeRadioButton(char *name, char *value, boolean checked)$/;"	f
cgiMakeResetButton	lib/cheapcgi.c	/^void cgiMakeResetButton()$/;"	f
cgiMakeSelectDropList	lib/cheapcgi.c	/^char *cgiMakeSelectDropList(boolean multiple, char *name, struct slPair *valsAndLabels,char *selected, char *anyAll,char *extraClasses, char *extraHtml)$/;"	f
cgiMakeSingleSelectDropList	inc/cheapcgi.h	343;"	d
cgiMakeSubmitButton	lib/cheapcgi.c	/^void cgiMakeSubmitButton()$/;"	f
cgiMakeTextArea	lib/cheapcgi.c	/^void cgiMakeTextArea(char *varName, char *initialVal, int rowCount, int columnCount)$/;"	f
cgiMakeTextAreaDisableable	lib/cheapcgi.c	/^void cgiMakeTextAreaDisableable(char *varName, char *initialVal, int rowCount, int columnCount, boolean disabled)$/;"	f
cgiMakeTextVar	lib/cheapcgi.c	/^void cgiMakeTextVar(char *varName, char *initialVal, int charSize)$/;"	f
cgiMakeTextVarWithExtraHtml	lib/cheapcgi.c	/^void cgiMakeTextVarWithExtraHtml(char *varName, char *initialVal, int width, char *extra)$/;"	f
cgiMultListShadowPrefix	lib/cheapcgi.c	/^char *cgiMultListShadowPrefix()$/;"	f
cgiOneChoice	lib/cheapcgi.c	/^int cgiOneChoice(char *varName, struct cgiChoice *choices, int choiceSize)$/;"	f
cgiOptionalDouble	lib/cheapcgi.c	/^double cgiOptionalDouble(char *varName, double defaultVal)$/;"	f
cgiOptionalInt	lib/cheapcgi.c	/^int cgiOptionalInt(char *varName, int defaultVal)$/;"	f
cgiOptionalString	lib/cheapcgi.c	/^char *cgiOptionalString(char *varName)$/;"	f
cgiParagraph	lib/cheapcgi.c	/^void cgiParagraph(char *text)$/;"	f
cgiParseAbort	lib/cheapcgi.c	/^static void cgiParseAbort()$/;"	f	file:
cgiParseInput	lib/cheapcgi.c	/^boolean cgiParseInput(char *input, struct hash **retHash,$/;"	f
cgiParseInputAbort	lib/cheapcgi.c	/^static void cgiParseInputAbort(char *input, struct hash **retHash,$/;"	f	file:
cgiParseMultipart	lib/cheapcgi.c	/^static void cgiParseMultipart(struct hash **retHash, struct cgiVar **retList)$/;"	f	file:
cgiParseRecover	lib/cheapcgi.c	/^static jmp_buf cgiParseRecover;$/;"	v	file:
cgiRemoteAddr	lib/cheapcgi.c	/^char *cgiRemoteAddr()$/;"	f
cgiRequestContentLength	lib/cheapcgi.c	/^char *cgiRequestContentLength()$/;"	f
cgiRequestMethod	lib/cheapcgi.c	/^char *cgiRequestMethod()$/;"	f
cgiRequestUri	lib/cheapcgi.c	/^char *cgiRequestUri()$/;"	f
cgiResetState	lib/cheapcgi.c	/^void cgiResetState()$/;"	f
cgiScriptName	lib/cheapcgi.c	/^char *cgiScriptName()$/;"	f
cgiServerName	lib/cheapcgi.c	/^char *cgiServerName()$/;"	f
cgiServerNamePort	lib/cheapcgi.c	/^char *cgiServerNamePort()$/;"	f
cgiServerPort	lib/cheapcgi.c	/^char *cgiServerPort()$/;"	f
cgiSimpleTableFieldStart	lib/cheapcgi.c	/^void cgiSimpleTableFieldStart()$/;"	f
cgiSimpleTableRowStart	lib/cheapcgi.c	/^void cgiSimpleTableRowStart()$/;"	f
cgiSimpleTableStart	lib/cheapcgi.c	/^void cgiSimpleTableStart()$/;"	f
cgiSpoof	lib/cheapcgi.c	/^boolean cgiSpoof(int *pArgc, char *argv[])$/;"	f
cgiString	lib/cheapcgi.c	/^char *cgiString(char *varName)$/;"	f
cgiStringList	lib/cheapcgi.c	/^struct slName *cgiStringList(char *varName)$/;"	f
cgiSuffix	lib/portimpl.h	/^    char * (*cgiSuffix)();$/;"	m	struct:webServerSpecific
cgiTableEnd	lib/cheapcgi.c	/^void cgiTableEnd()$/;"	f
cgiTableField	lib/cheapcgi.c	/^void cgiTableField(char *text)$/;"	f
cgiTableFieldEnd	lib/cheapcgi.c	/^void cgiTableFieldEnd()$/;"	f
cgiTableFieldStartAlignRight	lib/cheapcgi.c	/^void cgiTableFieldStartAlignRight()$/;"	f
cgiTableFieldWithMsg	lib/cheapcgi.c	/^void cgiTableFieldWithMsg(char *text, char *msg)$/;"	f
cgiTableRowEnd	lib/cheapcgi.c	/^void cgiTableRowEnd()$/;"	f
cgiUrlString	lib/cheapcgi.c	/^struct dyString *cgiUrlString()$/;"	f
cgiUserAgent	lib/cheapcgi.c	/^char *cgiUserAgent()$/;"	f
cgiUsualDouble	inc/cheapcgi.h	173;"	d
cgiUsualInt	inc/cheapcgi.h	172;"	d
cgiUsualString	lib/cheapcgi.c	/^char *cgiUsualString(char *varName, char *usual)$/;"	f
cgiVar	inc/cheapcgi.h	/^struct cgiVar$/;"	s
cgiVarExclude	lib/cheapcgi.c	/^void cgiVarExclude(char *varName)$/;"	f
cgiVarExcludeExcept	lib/cheapcgi.c	/^void cgiVarExcludeExcept(char **varNames)$/;"	f
cgiVarExists	lib/cheapcgi.c	/^boolean cgiVarExists(char *varName)$/;"	f
cgiVarList	lib/cheapcgi.c	/^struct cgiVar *cgiVarList()$/;"	f
cgiVarSet	lib/cheapcgi.c	/^void cgiVarSet(char *varName, char *val)$/;"	f
ch1b	hg/inc/stanMad.h	/^    int ch1b;	\/* The local background calculated for each spot for Cy3 *\/$/;"	m	struct:stanMad
ch1d	hg/inc/stanMad.h	/^    int ch1d;	\/* The difference between the total and background for each element. *\/$/;"	m	struct:stanMad
ch1i	hg/inc/stanMad.h	/^    int ch1i;	\/* The average total signal for each spot for Cy3 *\/$/;"	m	struct:stanMad
ch2b	hg/inc/stanMad.h	/^    int ch2b;	\/* The local background calculated for each spot for Cy5 *\/$/;"	m	struct:stanMad
ch2bn	hg/inc/stanMad.h	/^    int ch2bn;	\/* The local background calculated for each spot for Cy5 normalized so that the average log ratio of all well measured spots is equal to 0. *\/$/;"	m	struct:stanMad
ch2d	hg/inc/stanMad.h	/^    int ch2d;	\/* The difference between the total and background for each element. *\/$/;"	m	struct:stanMad
ch2dn	hg/inc/stanMad.h	/^    int ch2dn;	\/* The difference between the total and background for each element normalized so that the average log ratio of all well measured spots is equal to 0. *\/$/;"	m	struct:stanMad
ch2i	hg/inc/stanMad.h	/^    int ch2i;	\/* The average total signal for each spot for Cy5. *\/$/;"	m	struct:stanMad
ch2in	hg/inc/stanMad.h	/^    int ch2in;	\/* The average total signal for each spot for Cy5 normalized so that the average log ratio of all well measured spots is equal to 0. *\/$/;"	m	struct:stanMad
ch_ofst	lib/gemfont.h	/^WORD	*ch_ofst;	\/* On disk byte offset to beginning of ?? kerning ?? data. *\/$/;"	m	struct:font_hdr
chain	hg/inc/lsSnpPdb.h	/^    char chain;	\/* PDB chain id *\/$/;"	m	struct:lsSnpPdb
chain	inc/chain.h	/^struct chain$/;"	s
chainAliSize	hg/lib/liftOver.c	/^static int chainAliSize(struct chain *chain)$/;"	f	file:
chainBlocks	lib/chainBlock.c	/^struct chain *chainBlocks($/;"	f
chainCalcBounds	lib/chainConnect.c	/^void chainCalcBounds(struct chain *chain)$/;"	f
chainCalcScore	lib/chainConnect.c	/^double chainCalcScore(struct chain *chain, struct axtScoreScheme *ss, $/;"	f
chainCalcScoreSubChain	lib/chainConnect.c	/^double chainCalcScoreSubChain(struct chain *chain, struct axtScoreScheme *ss, $/;"	f
chainCfgUi	hg/lib/hui.c	/^void chainCfgUi(char *db, struct cart *cart, struct trackDb *tdb, char *prefix, char *title, boolean boxed, char *chromosome)$/;"	f
chainCmpQuery	lib/chain.c	/^int chainCmpQuery(const void *va, const void *vb)$/;"	f
chainCmpScore	lib/chain.c	/^int chainCmpScore(const void *va, const void *vb)$/;"	f
chainCmpScoreDesc	lib/chain.c	/^int chainCmpScoreDesc(const void *va, const void *vb)$/;"	f
chainCmpTarget	lib/chain.c	/^int chainCmpTarget(const void *va, const void *vb)$/;"	f
chainColorChromColors	hg/inc/hui.h	/^   chainColorChromColors = 0,$/;"	e	enum:chainColorEnum
chainColorDropDown	hg/lib/hui.c	/^void chainColorDropDown(char *var, char *curVal)$/;"	f
chainColorEnum	hg/inc/hui.h	/^enum chainColorEnum {$/;"	g
chainColorEnumToString	hg/lib/hui.c	/^char *chainColorEnumToString(enum chainColorEnum x)$/;"	f
chainColorNoColors	hg/inc/hui.h	/^   chainColorNoColors = 2,$/;"	e	enum:chainColorEnum
chainColorOptions	hg/lib/hui.c	/^static char *chainColorOptions[] = {$/;"	v	file:
chainColorScoreColors	hg/inc/hui.h	/^   chainColorScoreColors = 1,$/;"	e	enum:chainColorEnum
chainColorStringToEnum	hg/lib/hui.c	/^enum chainColorEnum chainColorStringToEnum(char *string)$/;"	f
chainConnect	inc/chainConnect.h	/^struct chainConnect$/;"	s
chainConnectCost	lib/chainConnect.c	/^int chainConnectCost(struct cBlock *a, struct cBlock *b, $/;"	f
chainConnectGapCost	lib/chainConnect.c	/^int chainConnectGapCost(int dq, int dt, struct chainConnect *cc)$/;"	f
chainDbAddBlocks	hg/lib/chainDb.c	/^void chainDbAddBlocks(struct chain *chain, char *track, struct sqlConnection *conn)$/;"	f
chainDbNormScoreAvailable	hg/lib/hui.c	/^boolean chainDbNormScoreAvailable(struct trackDb *tdb)$/;"	f
chainFastSubsetOnT	lib/chain.c	/^void chainFastSubsetOnT(struct chain *chain, struct cBlock *firstBlock,$/;"	f
chainFetchColorOption	hg/lib/chainCart.c	/^enum chainColorEnum chainFetchColorOption(struct cart *cart,$/;"	f
chainFind	lib/chain.c	/^struct chain *chainFind(struct hash *hash, int id)$/;"	f
chainFree	lib/chain.c	/^void chainFree(struct chain **pChain)$/;"	f
chainFreeList	lib/chain.c	/^void chainFreeList(struct chain **pList)$/;"	f
chainGap	hg/inc/chainGap.h	/^struct chainGap$/;"	s
chainGapCommaIn	hg/lib/chainGap.c	/^struct chainGap *chainGapCommaIn(char **pS, struct chainGap *ret)$/;"	f
chainGapCommaOut	hg/inc/chainGap.h	49;"	d
chainGapFree	hg/lib/chainGap.c	/^void chainGapFree(struct chainGap **pEl)$/;"	f
chainGapFreeList	hg/lib/chainGap.c	/^void chainGapFreeList(struct chainGap **pList)$/;"	f
chainGapLoad	hg/lib/chainGap.c	/^struct chainGap *chainGapLoad(char **row)$/;"	f
chainGapLoadAll	hg/lib/chainGap.c	/^struct chainGap *chainGapLoadAll(char *fileName) $/;"	f
chainGapOutput	hg/lib/chainGap.c	/^void chainGapOutput(struct chainGap *el, FILE *f, char sep, char lastSep) $/;"	f
chainGapStaticLoad	hg/lib/chainGap.c	/^void chainGapStaticLoad(char **row, struct chainGap *ret)$/;"	f
chainGapTabOut	hg/inc/chainGap.h	46;"	d
chainHeadCommaIn	hg/lib/chainDb.c	/^struct chain *chainHeadCommaIn(char **pS, struct chain *ret)$/;"	f
chainHeadCommaOut	hg/inc/chainDb.h	40;"	d
chainHeadLoad	hg/lib/chainDb.c	/^struct chain *chainHeadLoad(char **row)$/;"	f
chainHeadLoadAll	hg/lib/chainDb.c	/^struct chain *chainHeadLoadAll(char *fileName) $/;"	f
chainHeadOutput	hg/lib/chainDb.c	/^void chainHeadOutput(struct chain *el, FILE *f, char sep, char lastSep) $/;"	f
chainHeadStaticLoad	hg/lib/chainDb.c	/^void chainHeadStaticLoad(char **row, struct chain *ret)$/;"	f
chainHeadTabOut	hg/inc/chainDb.h	37;"	d
chainId	hg/inc/chainGap.h	/^    unsigned chainId;	\/* chain id in chain table *\/$/;"	m	struct:chainGap
chainId	hg/inc/chainLink.h	/^    unsigned chainId;	\/* chain id in chain table *\/$/;"	m	struct:chainLink
chainId	hg/inc/chainNet.h	/^    int chainId;   \/* Chain id.  0 for a gap. *\/$/;"	m	struct:cnFill
chainId	hg/inc/chainView.h	/^    unsigned chainId;	\/* chain id in chain table *\/$/;"	m	struct:chainView
chainId	hg/inc/netAlign.h	/^    unsigned chainId;	\/* Associated chain Id with alignment details *\/$/;"	m	struct:netAlign
chainIdNext	lib/chain.c	/^void chainIdNext(struct chain *chain)$/;"	f
chainIdReset	lib/chain.c	/^void chainIdReset()$/;"	f
chainIdSet	lib/chain.c	/^void chainIdSet(int id)$/;"	f
chainLink	hg/inc/chainLink.h	/^struct chainLink$/;"	s
chainLinkAddResult	hg/lib/chainNetDbLoad.c	/^static void chainLinkAddResult(struct sqlResult *sr, int rowOffset, struct chain *chain)$/;"	f	file:
chainLinkCommaIn	hg/lib/chainLink.c	/^struct chainLink *chainLinkCommaIn(char **pS, struct chainLink *ret)$/;"	f
chainLinkCommaOut	hg/inc/chainLink.h	53;"	d
chainLinkFree	hg/lib/chainLink.c	/^void chainLinkFree(struct chainLink **pEl)$/;"	f
chainLinkFreeList	hg/lib/chainLink.c	/^void chainLinkFreeList(struct chainLink **pList)$/;"	f
chainLinkLoad	hg/lib/chainLink.c	/^struct chainLink *chainLinkLoad(char **row)$/;"	f
chainLinkLoadAll	hg/lib/chainLink.c	/^struct chainLink *chainLinkLoadAll(char *fileName) $/;"	f
chainLinkOutput	hg/lib/chainLink.c	/^void chainLinkOutput(struct chainLink *el, FILE *f, char sep, char lastSep) $/;"	f
chainLinkStaticLoad	hg/lib/chainLink.c	/^void chainLinkStaticLoad(char **row, struct chainLink *ret)$/;"	f
chainLinkTabOut	hg/inc/chainLink.h	50;"	d
chainLoadId	hg/lib/chainNetDbLoad.c	/^struct chain *chainLoadId(char *database, char *track, char *chrom, int id)$/;"	f
chainLoadIdRange	hg/lib/chainNetDbLoad.c	/^struct chain *chainLoadIdRange(char *database, char *track, char *chrom, $/;"	f
chainLoadIdSome	hg/lib/chainNetDbLoad.c	/^static struct chain *chainLoadIdSome(char *database, char *track, char *chrom, $/;"	f	file:
chainLookup	lib/chain.c	/^struct chain *chainLookup(struct hash *hash, int id)$/;"	f
chainMergeAbutting	lib/chainConnect.c	/^void chainMergeAbutting(struct chain *chain)$/;"	f
chainNet	hg/inc/chainNet.h	/^struct chainNet$/;"	s
chainNetFree	hg/lib/chainNet.c	/^void chainNetFree(struct chainNet **pNet)$/;"	f
chainNetFreeList	hg/lib/chainNet.c	/^void chainNetFreeList(struct chainNet **pList)$/;"	f
chainNetLoadChrom	hg/lib/chainNetDbLoad.c	/^struct chainNet *chainNetLoadChrom(char *database, char *track,$/;"	f
chainNetLoadRange	hg/lib/chainNetDbLoad.c	/^struct chainNet *chainNetLoadRange(char *database, char *track,$/;"	f
chainNetLoadResult	hg/lib/chainNetDbLoad.c	/^struct chainNet *chainNetLoadResult(struct sqlResult *sr, int rowOffset)$/;"	f
chainNetMarkUsed	hg/lib/chainNet.c	/^void chainNetMarkUsed(struct chainNet *net, Bits *bits, int bitCount)$/;"	f
chainNetRead	hg/lib/chainNet.c	/^struct chainNet *chainNetRead(struct lineFile *lf)$/;"	f
chainNetWrite	hg/lib/chainNet.c	/^void chainNetWrite(struct chainNet *net, FILE *f)$/;"	f
chainRangeIntersection	hg/lib/liftOver.c	/^static int chainRangeIntersection(struct chain *chain, struct liftRange *rangeList)$/;"	f	file:
chainRangeQPlusStrand	lib/chain.c	/^void chainRangeQPlusStrand(struct chain *chain, int *retQs, int *retQe)$/;"	f
chainRead	lib/chain.c	/^struct chain *chainRead(struct lineFile *lf)$/;"	f
chainReadAll	lib/chain.c	/^struct hash *chainReadAll(char *fileName)$/;"	f
chainReadAllSwap	lib/chain.c	/^struct hash *chainReadAllSwap(char *fileName, boolean swapQ)$/;"	f
chainReadAllWithMeta	lib/chain.c	/^struct hash *chainReadAllWithMeta(char *fileName, FILE *f)$/;"	f
chainReadBlocks	lib/chain.c	/^void chainReadBlocks(struct lineFile *lf, struct chain *chain)$/;"	f
chainReadChainLine	lib/chain.c	/^struct chain *chainReadChainLine(struct lineFile *lf)$/;"	f
chainReadUsedSwap	lib/chain.c	/^struct hash *chainReadUsedSwap(char *fileName, boolean swapQ, Bits *bits)$/;"	f
chainReadUsedSwapLf	lib/chain.c	/^struct hash *chainReadUsedSwapLf(char *fileName, boolean swapQ, Bits *bits, struct lineFile *lf)$/;"	f
chainRemovePartialOverlaps	lib/chainConnect.c	/^void chainRemovePartialOverlaps(struct chain *chain, $/;"	f
chainScoreBlock	lib/chainConnect.c	/^double chainScoreBlock(char *q, char *t, int size, int matrix[256][256])$/;"	f
chainSubset	hg/inc/transMapInfo.h	/^    enum transMapInfoChainSubset chainSubset;	\/* chain subset used *\/$/;"	m	struct:transMapInfo	typeref:enum:transMapInfo::transMapInfoChainSubset
chainSubsetOnQ	lib/chain.c	/^void chainSubsetOnQ(struct chain *chain, int subStart, int subEnd, $/;"	f
chainSubsetOnT	lib/chain.c	/^void chainSubsetOnT(struct chain *chain, int subStart, int subEnd, $/;"	f
chainSwap	lib/chain.c	/^void chainSwap(struct chain *chain)$/;"	f
chainToAxt	lib/chainToAxt.c	/^struct axt *chainToAxt(struct chain *chain, $/;"	f
chainToFullPsl	lib/chainToPsl.c	/^struct psl *chainToFullPsl(struct chain *chain, $/;"	f
chainToPsl	lib/chainToPsl.c	/^struct psl *chainToPsl(struct chain *chain)$/;"	f
chainView	hg/inc/chainView.h	/^struct chainView$/;"	s
chainWrite	lib/chain.c	/^void chainWrite(struct chain *chain, FILE *f)$/;"	f
chainWriteAll	lib/chain.c	/^void chainWriteAll(struct chain *chainList, FILE *f)$/;"	f
chainWriteHead	lib/chain.c	/^void chainWriteHead(struct chain *chain, FILE *f)$/;"	f
chainWriteLong	lib/chain.c	/^void chainWriteLong(struct chain *chain, FILE *f)$/;"	f
charCount	inc/seqOut.h	/^    long charCount;     \/* Number of characters written total. *\/$/;"	m	struct:cfm
charFilterType	hg/inc/bed.h	/^enum charFilterType$/;"	g
charForType	hg/lib/ggDump.c	/^static char charForType(int type)$/;"	f	file:
charSepToSlNames	lib/obscure.c	/^struct slName *charSepToSlNames(char *string, char c)$/;"	f
cheapGapCosts	lib/gapCalc.c	/^static char *cheapGapCosts = $/;"	v	file:
checkAccLen	hg/lib/genbank.c	/^static void checkAccLen(char *acc)$/;"	f	file:
checkAllPresent	hg/lib/qaSeq.c	/^static void checkAllPresent(struct qaSeq *qaList)$/;"	f	file:
checkAllowedBigDataUrlProtocols	hg/lib/customFactory.c	/^static void checkAllowedBigDataUrlProtocols(char *url)$/;"	f	file:
checkAttrTag	lib/gff3.c	/^static boolean checkAttrTag(struct gff3Ann *g3a, char *tag)$/;"	f	file:
checkBigBedSupport	lib/lineFileOnBigBed.c	/^void checkBigBedSupport(struct lineFile *lf, char *where)$/;"	f
checkBoxIdFree	hg/lib/hui.c	/^static void checkBoxIdFree(char**id)$/;"	f	file:
checkBoxIdMakeForTrack	hg/lib/hui.c	/^static char *checkBoxIdMakeForTrack(struct trackDb *tdb,members_t** dims,int dimMax,membership_t *membership)$/;"	f	file:
checkCdsBounds	hg/lib/genePred.c	/^static void checkCdsBounds(char *desc, FILE* out, struct genePred* gp)$/;"	f	file:
checkChainGaps	lib/chainConnect.c	/^static void checkChainGaps(struct chain *chain, char *message)$/;"	f	file:
checkChainIncreases	lib/chainConnect.c	/^static void checkChainIncreases(struct chain *chain, char *message)$/;"	f	file:
checkComplete	jkOwnLib/xenbig.c	/^static void checkComplete(struct dlList *contigList)$/;"	f	file:
checkConfigPerms	hg/lib/hgConfig.c	/^static void checkConfigPerms(char *filename)$/;"	f	file:
checkEvidenceMatrix	hg/lib/geneGraph.c	/^boolean checkEvidenceMatrix(struct geneGraph *gg)$/;"	f
checkExactlyOne	lib/htmlPage.c	/^static void checkExactlyOne(struct htmlTag *tagList, char *type)$/;"	f	file:
checkExon	hg/lib/genePred.c	/^static void checkExon(char *desc, struct genePred* gp, int iExon)$/;"	f	file:
checkForNoFrames	hg/lib/genePred.c	/^static void checkForNoFrames(struct genePred *gp)$/;"	f	file:
checkIfInTable	hg/lib/hdb.c	/^static boolean checkIfInTable(struct sqlConnection *conn, char *acc,$/;"	f	file:
checkIgnoreBalance	hg/lib/joiner.c	/^static void checkIgnoreBalance(struct joiner *joiner)$/;"	f	file:
checkNest	lib/htmlPage.c	/^static void checkNest(struct htmlPage *page,$/;"	f	file:
checkOpts	lib/pipeline.c	/^static void checkOpts(unsigned opts)$/;"	f	file:
checkPcAndTranslateCoordinates	hg/lib/coordConv.c	/^void checkPcAndTranslateCoordinates(struct coordConvRep *ccr, struct possibleCoord *pc)$/;"	f
checkQueryFormat	hg/lib/hgFindSpecCustom.c	/^static void checkQueryFormat(struct hgFindSpec *hfs)$/;"	f	file:
checkSingleValAttr	lib/gff3.c	/^static void checkSingleValAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
checkSizeTypes	lib/dnautil.c	/^static void checkSizeTypes()$/;"	f	file:
checkStartBeforeEnd	lib/chainConnect.c	/^static void checkStartBeforeEnd(struct chain *chain, char *message)$/;"	f	file:
checkStartEnd	hg/lib/customFactory.c	/^static boolean checkStartEnd(char *sSize, char *sStart, char *sEnd)$/;"	f	file:
checkSupport	inc/linefile.h	/^    void(*checkSupport)(struct lineFile *lf, char *where); \/\/ check if operation supported $/;"	m	struct:lineFile
checkTagIsInside	lib/htmlPage.c	/^static void checkTagIsInside(struct htmlPage *page, char *outsiders, char *insiders,  $/;"	f	file:
checkTermRegex	hg/lib/hgFindSpecCustom.c	/^static void checkTermRegex(struct hgFindSpec *hfs)$/;"	f	file:
checkTime	hg/inc/mysqlTableStatus.h	/^    char *checkTime;	\/* Table last checked time (or NULL) *\/$/;"	m	struct:mysqlTableStatus
checkTime	hg/inc/tableStatus.h	/^    char *checkTime;	\/* YYYY-MM-DD HH:MM:SS format last check (not query) time *\/$/;"	m	struct:tableStatus
checkUniqueNames	jkOwnLib/genoFind.c	/^static void checkUniqueNames(bioSeq *seqList)$/;"	f	file:
checkVariantList	hg/lib/gpFx.c	/^static void checkVariantList(struct variant *variant)$/;"	f	file:
checkWibFile	hg/lib/annoStreamWig.c	/^static void checkWibFile(struct annoStreamWig *self, char *wibFile)$/;"	f	file:
checkWordCount	lib/oldGff.c	/^static boolean checkWordCount(struct gff *gff, int wordCount)$/;"	f	file:
checkXrefQueryFormat	hg/lib/hgFindSpecCustom.c	/^static void checkXrefQueryFormat(struct hgFindSpec *hfs)$/;"	f	file:
checkedDotsEnabled	lib/verbose.c	/^static boolean checkedDotsEnabled = FALSE;  \/* have we check for dot output$/;"	v	file:
checkedTags	hg/lib/hui.c	/^    char* checkedTags[27];  \/\/ FIXME: Should move checkedTags into membersForAll->members[ix]->selected;$/;"	m	struct:_membersForAll	file:
chemo	hg/inc/ispyTables.h	/^struct chemo$/;"	s
chemoCommaIn	hg/lib/ispyTables.c	/^struct chemo *chemoCommaIn(char **pS, struct chemo *ret)$/;"	f
chemoCommaOut	hg/inc/ispyTables.h	249;"	d
chemoFree	hg/lib/ispyTables.c	/^void chemoFree(struct chemo **pEl)$/;"	f
chemoFreeList	hg/lib/ispyTables.c	/^void chemoFreeList(struct chemo **pList)$/;"	f
chemoLoadAll	hg/lib/ispyTables.c	/^struct chemo *chemoLoadAll(char *fileName) $/;"	f
chemoLoadAllByChar	hg/lib/ispyTables.c	/^struct chemo *chemoLoadAllByChar(char *fileName, char chopper) $/;"	f
chemoLoadAllByTab	hg/inc/ispyTables.h	202;"	d
chemoLoadByQuery	hg/lib/ispyTables.c	/^struct chemo *chemoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
chemoLoadWithNull	hg/lib/ispyTables.c	/^struct chemo *chemoLoadWithNull(char **row)$/;"	f
chemoOutput	hg/lib/ispyTables.c	/^void chemoOutput(struct chemo *el, FILE *f, char sep, char lastSep) $/;"	f
chemoSaveToDb	hg/lib/ispyTables.c	/^void chemoSaveToDb(struct sqlConnection *conn, struct chemo *el, char *tableName, int updateSize)$/;"	f
chemoSaveToDbEscaped	hg/lib/ispyTables.c	/^void chemoSaveToDbEscaped(struct sqlConnection *conn, struct chemo *el, char *tableName, int updateSize)$/;"	f
chemoStaticLoadWithNull	hg/lib/ispyTables.c	/^void chemoStaticLoadWithNull(char **row, struct chemo *ret)$/;"	f
chemoTabOut	hg/inc/ispyTables.h	246;"	d
chicken13kInfo	hg/inc/chicken13kInfo.h	/^struct chicken13kInfo$/;"	s
chicken13kInfoCommaIn	hg/lib/chicken13kInfo.c	/^struct chicken13kInfo *chicken13kInfoCommaIn(char **pS, struct chicken13kInfo *ret)$/;"	f
chicken13kInfoCommaOut	hg/inc/chicken13kInfo.h	95;"	d
chicken13kInfoFree	hg/lib/chicken13kInfo.c	/^void chicken13kInfoFree(struct chicken13kInfo **pEl)$/;"	f
chicken13kInfoFreeList	hg/lib/chicken13kInfo.c	/^void chicken13kInfoFreeList(struct chicken13kInfo **pList)$/;"	f
chicken13kInfoLoad	hg/lib/chicken13kInfo.c	/^struct chicken13kInfo *chicken13kInfoLoad(char **row)$/;"	f
chicken13kInfoLoadAll	hg/lib/chicken13kInfo.c	/^struct chicken13kInfo *chicken13kInfoLoadAll(char *fileName) $/;"	f
chicken13kInfoLoadAllByChar	hg/lib/chicken13kInfo.c	/^struct chicken13kInfo *chicken13kInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
chicken13kInfoLoadAllByTab	hg/inc/chicken13kInfo.h	48;"	d
chicken13kInfoLoadByQuery	hg/lib/chicken13kInfo.c	/^struct chicken13kInfo *chicken13kInfoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
chicken13kInfoOutput	hg/lib/chicken13kInfo.c	/^void chicken13kInfoOutput(struct chicken13kInfo *el, FILE *f, char sep, char lastSep) $/;"	f
chicken13kInfoSaveToDb	hg/lib/chicken13kInfo.c	/^void chicken13kInfoSaveToDb(struct sqlConnection *conn, struct chicken13kInfo *el, char *tableName, int updateSize)$/;"	f
chicken13kInfoSaveToDbEscaped	hg/lib/chicken13kInfo.c	/^void chicken13kInfoSaveToDbEscaped(struct sqlConnection *conn, struct chicken13kInfo *el, char *tableName, int updateSize)$/;"	f
chicken13kInfoStaticLoad	hg/lib/chicken13kInfo.c	/^void chicken13kInfoStaticLoad(char **row, struct chicken13kInfo *ret)$/;"	f
chicken13kInfoTabOut	hg/inc/chicken13kInfo.h	92;"	d
childDistance	inc/hacTree.h	/^    double childDistance;       \/\/ Result of distance function on left and right kids$/;"	m	struct:hacTree
children	hg/inc/chainNet.h	/^    struct cnFill *children; \/* List of child gaps. *\/$/;"	m	struct:cnFill	typeref:struct:cnFill::cnFill
children	hg/inc/joiner.h	/^    struct slRef *children;		\/* References to children if any. *\/$/;"	m	struct:joinerSet	typeref:struct:joinerSet::slRef
children	hg/inc/trackDb.h	/^    struct slRef *children;     \/* children of folders (superTracks) only.  Needed as slRef since these children are on the main trackList and can't be in 2 sl's at once *\/$/;"	m	struct:trackDb	typeref:struct:trackDb::slRef
children	inc/dtdParse.h	/^    struct dtdElChild *children;     \/* Child elements. *\/$/;"	m	struct:dtdElement	typeref:struct:dtdElement::dtdElChild
children	inc/gff3.h	/^    struct gff3AnnRef *children;  \/* child nodes *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3AnnRef
children	inc/hgap.h	/^    struct hgNest *children;	\/* Children. *\/$/;"	m	struct:hgNest	typeref:struct:hgNest::hgNest
children	inc/rql.h	/^    struct rqlParse *children;	\/* Points to oldest child if any. *\/$/;"	m	struct:rqlParse	typeref:struct:rqlParse::rqlParse
children	inc/unfin.h	/^    struct contigTree *children; \/* Sub-contigs. *\/$/;"	m	struct:contigTree	typeref:struct:contigTree::contigTree
children	lib/cirTree.c	/^    struct rTree *children;	\/* Child list. *\/$/;"	m	struct:rTree	typeref:struct:rTree::rTree	file:
chimeraxBegin	hg/lib/lsSnpPdbChimera.c	/^static FILE *chimeraxBegin(char *outName)$/;"	f	file:
chimeraxEnd	hg/lib/lsSnpPdbChimera.c	/^static void chimeraxEnd(FILE **xfhPtr)$/;"	f	file:
chimeraxGen	hg/lib/lsSnpPdbChimera.c	/^static void chimeraxGen(struct sqlConnection *conn,$/;"	f	file:
chimeraxHead	hg/lib/lsSnpPdbChimera.c	/^static char *chimeraxHead =$/;"	v	file:
chimeraxPythonFile	hg/lib/lsSnpPdbChimera.c	/^static char *chimeraxPythonFile = "lsSnpPdbChimera.py";$/;"	v	file:
chimeraxTail	hg/lib/lsSnpPdbChimera.c	/^static char *chimeraxTail =$/;"	v	file:
chimpAllele	hg/inc/hapmapAllelesSummary.h	/^    char *chimpAllele;	\/* chimp allele *\/$/;"	m	struct:hapmapAllelesSummary
chimpAllele	hg/inc/hapmapPrimateAlleles.h	/^    char *chimpAllele;	\/* A, C, G, T, a, c, g, t, or . *\/$/;"	m	struct:hapmapPrimateAlleles
chimpAlleleQuality	hg/inc/hapmapAllelesSummary.h	/^    unsigned chimpAlleleQuality;	\/* quality score (0-100) *\/$/;"	m	struct:hapmapAllelesSummary
chimpChrom	hg/inc/hapmapPrimateAlleles.h	/^    char *chimpChrom;	\/* Chimp Chromosome *\/$/;"	m	struct:hapmapPrimateAlleles
chimpDropDown	hg/lib/hui.c	/^void chimpDropDown(char *var, char *curVal)$/;"	f
chimpEnumToString	hg/lib/hui.c	/^char *chimpEnumToString(enum chimpOptEnum x)$/;"	f
chimpLinearInterpolation	hg/inc/hui.h	/^   chimpLinearInterpolation = 1,$/;"	e	enum:chimpOptEnum
chimpNoInterpolation	hg/inc/hui.h	/^   chimpNoInterpolation = 0,$/;"	e	enum:chimpOptEnum
chimpOptEnum	hg/inc/hui.h	/^enum chimpOptEnum {$/;"	g
chimpOptions	hg/lib/hui.c	/^static char *chimpOptions[] = {$/;"	v	file:
chimpPos	hg/inc/hapmapPrimateAlleles.h	/^    unsigned chimpPos;	\/* End position in himpChrom *\/$/;"	m	struct:hapmapPrimateAlleles
chimpQual	hg/inc/hapmapPrimateAlleles.h	/^    unsigned chimpQual;	\/* Chimp quality score *\/$/;"	m	struct:hapmapPrimateAlleles
chimpStrand	hg/inc/hapmapPrimateAlleles.h	/^    char chimpStrand;	\/* + or - or . *\/$/;"	m	struct:hapmapPrimateAlleles
chimpStringToEnum	hg/lib/hui.c	/^enum chimpOptEnum chimpStringToEnum(char *string)$/;"	f
chipEvidence	hg/inc/transRegCode.h	/^    char *chipEvidence;	\/* Evidence strength from CHIP\/CHIP assay *\/$/;"	m	struct:transRegCode
chits	hg/inc/genomicSuperDups.h	/^    char *chits;	\/* dup positive coverage *\/$/;"	m	struct:genomicSuperDups
chkBlkRanges	lib/psl.c	/^static void chkBlkRanges(char* pslDesc, FILE* out, struct psl* psl,$/;"	f	file:
chkError	lib/psl.c	/^static void chkError(char* pslDesc, FILE* out, struct psl* psl, int* errCount, char* format, ...)$/;"	f	file:
chkGroupLine	hg/lib/genePred.c	/^static void chkGroupLine(struct gffGroup *group, struct gffLine *gl, struct genePred *gp)$/;"	f	file:
chkRanges	lib/psl.c	/^static void chkRanges(char* pslDesc, FILE* out, struct psl* psl,$/;"	f	file:
chopAfter	hg/inc/joiner.h	/^    struct slName *chopAfter;	\/* Chop after strings *\/$/;"	m	struct:joinerField	typeref:struct:joinerField::slName
chopBefore	hg/inc/joiner.h	/^    struct slName *chopBefore;	\/* Chop before strings *\/$/;"	m	struct:joinerField	typeref:struct:joinerField::slName
chopByChar	lib/common.c	/^int chopByChar(char *in, char chopper, char *outArray[], int outSize)$/;"	f
chopByWhite	lib/common.c	/^int chopByWhite(char *in, char *outArray[], int outSize)$/;"	f
chopByWhiteRespectDoubleQuotes	lib/common.c	/^int chopByWhiteRespectDoubleQuotes(char *in, char *outArray[], int outSize)$/;"	f
chopCommas	inc/common.h	921;"	d
chopLine	inc/common.h	903;"	d
chopLineBin	hg/lib/liftOver.c	/^int chopLineBin(char *line, char *words[], int maxWord, $/;"	f
chopPrefix	lib/common.c	/^char *chopPrefix(char *s)$/;"	f
chopPrefixAt	lib/common.c	/^char *chopPrefixAt(char *s, char c)$/;"	f
chopString	lib/common.c	/^int chopString(char *in, char *sep, char *outArray[], int outSize)$/;"	f
chopSuffix	lib/common.c	/^void chopSuffix(char *s)$/;"	f
chopSuffixAt	lib/common.c	/^void chopSuffixAt(char *s, char c)$/;"	f
chopTabs	inc/common.h	918;"	d
chr	hg/inc/geneCheck.h	/^    char *chr;	\/* chromosome *\/$/;"	m	struct:geneCheck
chr	hg/inc/geneCheckDetails.h	/^    char *chr;	\/* chromosome *\/$/;"	m	struct:geneCheckDetails
chr18deletions	hg/inc/chr18deletions.h	/^struct chr18deletions$/;"	s
chr18deletionsCommaIn	hg/lib/chr18deletions.c	/^struct chr18deletions *chr18deletionsCommaIn(char **pS, struct chr18deletions *ret)$/;"	f
chr18deletionsCommaOut	hg/inc/chr18deletions.h	59;"	d
chr18deletionsFree	hg/lib/chr18deletions.c	/^void chr18deletionsFree(struct chr18deletions **pEl)$/;"	f
chr18deletionsFreeList	hg/lib/chr18deletions.c	/^void chr18deletionsFreeList(struct chr18deletions **pList)$/;"	f
chr18deletionsLoad	hg/lib/chr18deletions.c	/^struct chr18deletions *chr18deletionsLoad(char **row)$/;"	f
chr18deletionsLoadAll	hg/lib/chr18deletions.c	/^struct chr18deletions *chr18deletionsLoadAll(char *fileName) $/;"	f
chr18deletionsLoadWhere	hg/lib/chr18deletions.c	/^struct chr18deletions *chr18deletionsLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
chr18deletionsOutput	hg/lib/chr18deletions.c	/^void chr18deletionsOutput(struct chr18deletions *el, FILE *f, char sep, char lastSep) $/;"	f
chr18deletionsTabOut	hg/inc/chr18deletions.h	56;"	d
chrEnd	hg/inc/geneCheck.h	/^    unsigned chrEnd;	\/* chromosome end *\/$/;"	m	struct:geneCheck
chrEnd	hg/inc/geneCheckDetails.h	/^    unsigned chrEnd;	\/* chromosome end *\/$/;"	m	struct:geneCheckDetails
chrName	hg/inc/wiggle.h	/^    char *chrName;		\/*	for chrom==chrName on file reads *\/$/;"	m	struct:wiggleDataStream
chrNameCmp	hg/lib/hdb.c	/^int chrNameCmp(char *str1, char *str2)$/;"	f
chrSlNameCmp	hg/lib/hdb.c	/^int chrSlNameCmp(const void *el1, const void *el2)$/;"	f
chrStart	hg/inc/geneCheck.h	/^    unsigned chrStart;	\/* chromosome start *\/$/;"	m	struct:geneCheck
chrStart	hg/inc/geneCheckDetails.h	/^    unsigned chrStart;	\/* chromosome start *\/$/;"	m	struct:geneCheckDetails
chrStrippedCmp	hg/lib/hdb.c	/^int chrStrippedCmp(char *chrA, char *chrB)$/;"	f
chrom	hg/inc/affy10K.h	/^    char *chrom;	\/*   *\/$/;"	m	struct:affy10K
chrom	hg/inc/affyTransLifted.h	/^    char *chrom;	\/* Chromosome in hs.NCBIfreeze.chrom fomat originally *\/$/;"	m	struct:affyTransLifted
chrom	hg/inc/affyTranscriptome.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:affyTranscriptome
chrom	hg/inc/agpFrag.h	/^    char *chrom;	\/* which chromosome *\/$/;"	m	struct:agpFrag
chrom	hg/inc/agpGap.h	/^    char *chrom;	\/* which chromosome *\/$/;"	m	struct:agpGap
chrom	hg/inc/alignInfo.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:alignInfo
chrom	hg/inc/alleleFreqs.h	/^    char *chrom;	\/*  chrom			Chr1 *\/$/;"	m	struct:alleleFreqs
chrom	hg/inc/allpredictions.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:allpredictions
chrom	hg/inc/arCOGs.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:arCOGs
chrom	hg/inc/atomDb.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:atom
chrom	hg/inc/axtInfo.h	/^    char *chrom;	\/* chromosome name *\/$/;"	m	struct:axtInfo
chrom	hg/inc/bactigPos.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:bactigPos
chrom	hg/inc/bed12Source.h	/^    char *chrom;	\/* Chromosome (or contig, scaffold, etc.) *\/$/;"	m	struct:bed12Source
chrom	hg/inc/bed12wSeq.h	/^    char *chrom;	\/* Chromosome (or contig, scaffold, etc.) *\/$/;"	m	struct:bed12wSeq
chrom	hg/inc/bed5FloatScore.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:bed5FloatScore
chrom	hg/inc/bed5Pval.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:bed5Pval
chrom	hg/inc/bed6FloatScore.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:bed6FloatScore
chrom	hg/inc/bed8Attrs.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:bed8Attrs
chrom	hg/inc/bedDetail.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:bedDetail
chrom	hg/inc/bedGraph.h	/^    char *chrom;	\/* Chromosome or FPC contig *\/$/;"	m	struct:bedGraph
chrom	hg/inc/bgiSnp.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:bgiSnp
chrom	hg/inc/blastzNet.h	/^    char *chrom;	\/* Human Chrom *\/$/;"	m	struct:blastzNet
chrom	hg/inc/ccdsGeneMap.h	/^    char *chrom;	\/* chromosome of other gene *\/$/;"	m	struct:ccdsGeneMap
chrom	hg/inc/cddInfo.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:cddInfo
chrom	hg/inc/celeraCoverage.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:celeraCoverage
chrom	hg/inc/celeraDupPositive.h	/^    char *chrom;	\/* Human chromosome *\/$/;"	m	struct:celeraDupPositive
chrom	hg/inc/cgh.h	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:cgh
chrom	hg/inc/chr18deletions.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:chr18deletions
chrom	hg/inc/chromGraph.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:chromGraph
chrom	hg/inc/chromGraph.h	/^    char chrom[256];	\/* Current chromosome. *\/$/;"	m	struct:chromGraphBin
chrom	hg/inc/chromInfo.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:chromInfo
chrom	hg/inc/chromInserts.h	/^    char *chrom;		  \/* Chromosome name, allocated in hash. *\/$/;"	m	struct:chromInserts
chrom	hg/inc/chromInserts.h	/^    struct chromInserts *chrom; \/* Pointer to associated chromosome. *\/$/;"	m	struct:bigInsert	typeref:struct:bigInsert::chromInserts
chrom	hg/inc/clonePos.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:clonePos
chrom	hg/inc/cnpIafrate.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:cnpIafrate
chrom	hg/inc/cnpIafrate2.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:cnpIafrate2
chrom	hg/inc/cnpLocke.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:cnpLocke
chrom	hg/inc/cnpRedon.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:cnpRedon
chrom	hg/inc/cnpSebat.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:cnpSebat
chrom	hg/inc/cnpSebat2.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:cnpSebat2
chrom	hg/inc/cnpSharp.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:cnpSharp
chrom	hg/inc/cnpSharp2.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:cnpSharp2
chrom	hg/inc/codeBlast.h	/^    char *chrom;	\/* Chromosome or FPC contig *\/$/;"	m	struct:codeBlast
chrom	hg/inc/coordConv.h	/^    char *chrom;	\/** Chromosome Name *\/$/;"	m	struct:coordConv
chrom	hg/inc/cpgIsland.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:cpgIsland
chrom	hg/inc/cpgIslandExt.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:cpgIslandExt
chrom	hg/inc/ctgPos.h	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:ctgPos
chrom	hg/inc/ctgPos2.h	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:ctgPos2
chrom	hg/inc/cytoBand.h	/^    char *chrom;	\/* Human chromosome number *\/$/;"	m	struct:cytoBand
chrom	hg/inc/dbRIP.h	/^    char *chrom;	\/* Chromosome (or contig, scaffold, etc.) *\/$/;"	m	struct:dbRIP
chrom	hg/inc/delConrad2.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:delConrad2
chrom	hg/inc/delHinds2.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:delHinds2
chrom	hg/inc/dgv.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:dgv
chrom	hg/inc/dless.h	/^    char *chrom;	\/* Chromosome or FPC contig *\/$/;"	m	struct:dless
chrom	hg/inc/dnaProbe.h	/^    char *chrom;	\/* chromosome that sequence is from *\/$/;"	m	struct:dnaProbe
chrom	hg/inc/dvBed.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:dvBed
chrom	hg/inc/easyGene.h	/^    char *chrom;	\/* Chromosome or FPC contig *\/$/;"	m	struct:easyGene
chrom	hg/inc/ensPhusionBlast.h	/^    char *chrom;	\/* $Organism chromosome *\/$/;"	m	struct:ensPhusionBlast
chrom	hg/inc/est3.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:est3
chrom	hg/inc/estOrientInfo.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:estOrientInfo
chrom	hg/inc/estPair.h	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:estPair
chrom	hg/inc/exoFish.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:exoFish
chrom	hg/inc/exprBed.h	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:exprBed
chrom	hg/inc/featureBits.h	/^    char *chrom;	\/* Chromosome name. *\/$/;"	m	struct:featureBits
chrom	hg/inc/fishClones.h	/^    char *chrom;	\/* Human chromosome number *\/$/;"	m	struct:fishClones
chrom	hg/inc/flyreg.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:flyreg
chrom	hg/inc/flyreg2.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:flyreg2
chrom	hg/inc/fosEndPairs.h	/^    char *chrom;	\/* Human chromosome *\/$/;"	m	struct:fosEndPairs
chrom	hg/inc/gbProtAnn.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:gbProtAnn
chrom	hg/inc/gbRNAs.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:gbRNAs
chrom	hg/inc/gcPercent.h	/^    char *chrom;	\/* Human chromosome number *\/$/;"	m	struct:gcPercent
chrom	hg/inc/genMapDb.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:genMapDb
chrom	hg/inc/gencodeIntron.h	/^    char *chrom;	\/* Chromosome or FPC contig *\/$/;"	m	struct:gencodeIntron
chrom	hg/inc/genePred.h	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:genePred
chrom	hg/inc/genomicDups.h	/^    char *chrom;	\/* Human chromosome *\/$/;"	m	struct:genomicDups
chrom	hg/inc/genomicSuperDups.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:genomicSuperDups
chrom	hg/inc/genotype.h	/^    char *chrom;	\/*  chrom		# Chr7 *\/$/;"	m	struct:genotype
chrom	hg/inc/genotypeFreqs.h	/^    char *chrom;	\/* chrom		Chr1 *\/$/;"	m	struct:genotypeFreqs
chrom	hg/inc/gv.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:gvPos
chrom	hg/inc/gwasCatalog.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:gwasCatalog
chrom	hg/inc/hapmapAlleleFreq.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:hapmapAlleleFreq
chrom	hg/inc/hapmapAlleles.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapAlleles
chrom	hg/inc/hapmapAllelesCombined.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapAllelesCombined
chrom	hg/inc/hapmapAllelesOrtho.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapAllelesOrtho
chrom	hg/inc/hapmapAllelesSummary.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapAllelesSummary
chrom	hg/inc/hapmapLd.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapLd
chrom	hg/inc/hapmapPhaseIIISummary.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapPhaseIIISummary
chrom	hg/inc/hapmapPrimateAlleles.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapPrimateAlleles
chrom	hg/inc/hapmapSnps.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapSnps
chrom	hg/inc/hapmapSnpsCombined.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:hapmapSnpsCombined
chrom	hg/inc/hgFind.h	/^     char *chrom;		\/* Chromosome.  Not allocated here. *\/$/;"	m	struct:hgPos
chrom	hg/inc/hgdpGeo.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:hgdpGeo
chrom	hg/inc/hgnc.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:hgnc
chrom	hg/inc/humanParalog.h	/^    char *chrom;	\/* Human Chrom *\/$/;"	m	struct:humanParalog
chrom	hg/inc/isochores.h	/^    char *chrom;	\/* Human chromosome number *\/$/;"	m	struct:isochores
chrom	hg/inc/itemAttr.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:itemAttr
chrom	hg/inc/jaxQTL.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:jaxQTL
chrom	hg/inc/jaxQTL2.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:jaxQTL2
chrom	hg/inc/jaxQTL3.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:jaxQTL3
chrom	hg/inc/jgiGene.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:jgiGene
chrom	hg/inc/landmark.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:landmark
chrom	hg/inc/ld.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:ld
chrom	hg/inc/ld2.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:ld2
chrom	hg/inc/lfs.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:lfs
chrom	hg/inc/lowelabPfamHit.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:lowelabPfamHits
chrom	hg/inc/mafFrames.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:mafFrames
chrom	hg/inc/mafSummary.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:mafSummary
chrom	hg/inc/makeItemsItem.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:makeItemsItem
chrom	hg/inc/mammalPsg.h	/^    char *chrom;	\/* Chromosome (or contig, scaffold, etc.) *\/$/;"	m	struct:mammalPsg
chrom	hg/inc/mapSts.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:mapSts
chrom	hg/inc/mcnBreakpoints.h	/^    char *chrom;	\/* Human chromosome number *\/$/;"	m	struct:mcnBreakpoints
chrom	hg/inc/megablastInfo.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:megablastInfo
chrom	hg/inc/minChromSize.h	/^    char *chrom;	\/* Chromosome name, Not alloced here *\/$/;"	m	struct:minChromSize
chrom	hg/inc/mouseOrtho.h	/^    char *chrom;	\/* Human Chrom *\/$/;"	m	struct:mouseOrtho
chrom	hg/inc/mouseSyn.h	/^    char *chrom;	\/* Name of chromosome *\/$/;"	m	struct:mouseSyn
chrom	hg/inc/mouseSynWhd.h	/^    char *chrom;	\/* Human chromosome *\/$/;"	m	struct:mouseSynWhd
chrom	hg/inc/ncRna.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:ncRna
chrom	hg/inc/omicia.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:omiciaAuto
chrom	hg/inc/omicia.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:omiciaHand
chrom	hg/inc/oreganno.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:oreganno
chrom	hg/inc/oregannoOther.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:oregannoOther
chrom	hg/inc/orthoAlleles.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:orthoAlleles
chrom	hg/inc/pairedTagAlign.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:pairedTagAlign
chrom	hg/inc/peptideMapping.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:peptideMapping
chrom	hg/inc/pgPhenoAssoc.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:pgPhenoAssoc
chrom	hg/inc/pgPolyphenPred.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:pgPolyphenPred
chrom	hg/inc/pgSiftPred.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:pgSiftPred
chrom	hg/inc/pgSnp.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:pgSnp
chrom	hg/inc/plasEndPairs.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:plasEndPairs
chrom	hg/inc/protVar.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:protVarPos
chrom	hg/inc/pscreen.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:pscreen
chrom	hg/inc/pseudoGeneLink.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:pseudoGeneLink
chrom	hg/inc/putaInfo.h	/^    char *chrom;	\/* stamp's chrom *\/$/;"	m	struct:putaInfo
chrom	hg/inc/recombRate.h	/^    char *chrom;	\/* Human chromosome number *\/$/;"	m	struct:recombRate
chrom	hg/inc/recombRateMouse.h	/^    char *chrom;	\/* chromosome number *\/$/;"	m	struct:recombRateMouse
chrom	hg/inc/recombRateRat.h	/^    char *chrom;	\/* chromosome number *\/$/;"	m	struct:recombRateRat
chrom	hg/inc/retroMrnaInfo.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold col1 *\/$/;"	m	struct:retroMrnaInfo
chrom	hg/inc/rgdQtl.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:rgdQtl
chrom	hg/inc/rikenCluster.h	/^    char *chrom;	\/* Chomosome *\/$/;"	m	struct:rikenUcscCluster
chrom	hg/inc/rnaGene.h	/^    char *chrom;	\/* Chromosome gene is on *\/$/;"	m	struct:rnaGene
chrom	hg/inc/rnaGenes.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:rnaGenes
chrom	hg/inc/rnaGroup.h	/^    char *chrom;	\/* Chomosome *\/$/;"	m	struct:rnaGroup
chrom	hg/inc/rnaHybridization.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:rnaHybridization
chrom	hg/inc/rnaPLFold.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:rnaPLFold
chrom	hg/inc/rnaSecStr.h	/^    char *chrom;	\/* Chromosome or FPC contig *\/$/;"	m	struct:rnaSecStr
chrom	hg/inc/roughAli.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:roughAli
chrom	hg/inc/sample.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:sample
chrom	hg/inc/sangerGene.h	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:sangerGene
chrom	hg/inc/scoredRef.h	/^    char *chrom;	\/* Chromosome (this species) *\/$/;"	m	struct:scoredRef
chrom	hg/inc/sgdClone.h	/^    char *chrom;	\/* Chromosome in chrN format *\/$/;"	m	struct:sgdClone
chrom	hg/inc/sgdOther.h	/^    char *chrom;	\/* Chromosome in chrNN format *\/$/;"	m	struct:sgdOther
chrom	hg/inc/simpleNucDiff.h	/^    char *chrom;	\/* Target species chromosome *\/$/;"	m	struct:simpleNucDiff
chrom	hg/inc/simpleRepeat.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:simpleRepeat
chrom	hg/inc/snoRNAs.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:snoRNAs
chrom	hg/inc/snp.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:snp
chrom	hg/inc/snp125.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:snp125
chrom	hg/inc/snp125.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:snp125Extended
chrom	hg/inc/snp125Exceptions.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:snp125Exceptions
chrom	hg/inc/snp132Ext.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:snp132Ext
chrom	hg/inc/snpExtFile.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:snpExtFile
chrom	hg/inc/snpFasta.h	/^    char *chrom;	\/* Chromosome (can be 'multi') *\/$/;"	m	struct:snpFasta
chrom	hg/inc/snpMap.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:snpMap
chrom	hg/inc/snpTmp.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:snpTmp
chrom	hg/inc/softPromoter.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:softPromoter
chrom	hg/inc/stsMap.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:stsMap
chrom	hg/inc/stsMapMouse.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:stsMapMouse
chrom	hg/inc/stsMapMouseNew.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:stsMapMouseNew
chrom	hg/inc/stsMapRat.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:stsMapRat
chrom	hg/inc/stsMarker.h	/^    char *chrom;	\/* Chromosome or 'unknown' *\/$/;"	m	struct:stsMarker
chrom	hg/inc/switchDbTss.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:switchDbTss
chrom	hg/inc/synteny100000.h	/^    char *chrom;	\/* Human Chrom *\/$/;"	m	struct:synteny100000
chrom	hg/inc/syntenyBerk.h	/^    char *chrom;	\/* Human Chrom *\/$/;"	m	struct:syntenyBerk
chrom	hg/inc/syntenySanger.h	/^    char *chrom;	\/* Human Chrom *\/$/;"	m	struct:syntenySanger
chrom	hg/inc/tRNAs.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:tRNAs
chrom	hg/inc/tagAlign.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:tagAlign
chrom	hg/inc/tfbsCons.h	/^    char *chrom;	\/* Human chromosome *\/$/;"	m	struct:tfbsCons
chrom	hg/inc/tfbsConsSites.h	/^    char *chrom;	\/* Human chromosome *\/$/;"	m	struct:tfbsConsSites
chrom	hg/inc/tigrCmrGene.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:tigrCmrGene
chrom	hg/inc/tilingPath.h	/^    char *chrom;	\/* Chromosome name: chr1, chr2, etc. *\/$/;"	m	struct:tilingPath
chrom	hg/inc/transMapSrc.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:transMapSrc
chrom	hg/inc/transRegCode.h	/^    char *chrom;	\/* Chromosome binding site is on *\/$/;"	m	struct:transRegCode
chrom	hg/inc/transRegCodeProbe.h	/^    char *chrom;	\/* Chromosome binding site is on *\/$/;"	m	struct:transRegCodeProbe
chrom	hg/inc/txCluster.h	/^    char *chrom;	\/* Chromosome (or contig) *\/$/;"	m	struct:txCluster
chrom	hg/inc/txEdgeBed.h	/^    char *chrom;	\/* Chromosome or contig name *\/$/;"	m	struct:txEdgeBed
chrom	hg/inc/txEdgeOrtho.h	/^    char *chrom;	\/* Chromosome or contig name *\/$/;"	m	struct:txEdgeOrtho
chrom	hg/inc/ucscRetroInfo.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold col1 *\/$/;"	m	struct:ucscRetroInfo
chrom	hg/inc/variant.h	/^    char *chrom;	\/* Chromosome *\/$/;"	m	struct:variant
chrom	hg/inc/variome.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:variome
chrom	hg/inc/vntr.h	/^    char *chrom;	\/* chrom *\/$/;"	m	struct:vntr
chrom	hg/inc/wabAli.h	/^    char *chrom;	\/* Chromosome (current species). *\/$/;"	m	struct:wabAli
chrom	hg/inc/wgRna.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:wgRna
chrom	hg/inc/wiggle.h	/^    char *chrom;		\/*	chrom name for this set of data *\/$/;"	m	struct:wigAsciiData
chrom	hg/inc/wiggle.h	/^    char *chrom;		\/*	chrom name for this set of data *\/$/;"	m	struct:wiggleArray
chrom	hg/inc/wiggle.h	/^    char *chrom;		\/* Human chromosome or FPC contig *\/$/;"	m	struct:wiggle
chrom	hg/inc/wiggle.h	/^    char *chrom;	\/* chromosome or contig *\/$/;"	m	struct:wiggleData
chrom	hg/inc/wiggle.h	/^    char *chrom;	\/* chromosome or contig *\/$/;"	m	struct:wiggleStats
chrom	hg/inc/wikiTrack.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:wikiTrack
chrom	hg/inc/zdobnovSynt.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:zdobnovSynt
chrom	hg/lib/chromGraphFactory.c	/^    char *chrom;	\/* Not allocated here *\/$/;"	m	struct:chromPos	file:
chrom	hg/lib/genePredReader.c	/^    char* chrom;            \/* chrom restriction for files *\/$/;"	m	struct:genePredReader	file:
chrom	hg/lib/hgBam.c	/^    char *chrom;	\/* Chromosome name *\/$/;"	m	struct:bamToSamHelper	file:
chrom	hg/lib/lowelabPfamHit.h	/^    char *chrom;	\/* chromosome *\/$/;"	m	struct:lowelabPfamHits
chrom	hg/lib/mafGene.c	/^    char *chrom;$/;"	m	struct:speciesInfo	file:
chrom	hg/lib/pslReader.c	/^    char* chrom;            \/* chrom restriction for files *\/$/;"	m	struct:pslReader	file:
chrom	hg/lib/snoRNAs.h	/^    char *chrom;	\/* Reference sequence chromosome or scaffold *\/$/;"	m	struct:snoRNAs
chrom	inc/annoRow.h	/^    char *chrom;$/;"	m	struct:annoRow
chrom	inc/annoStreamer.h	/^    char *chrom;$/;"	m	struct:annoStreamer
chrom	inc/basicBed.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:bed
chrom	inc/basicBed.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:bed3
chrom	inc/basicBed.h	/^    char *chrom;	\/* Human chromosome or FPC contig *\/$/;"	m	struct:bed4
chrom	inc/basicBed.h	/^    char *chrom;                \/* Chromosome parsed out. *\/$/;"	m	struct:bedLine
chrom	inc/bigBed.h	/^    char *chrom;		\/* Chromosome name (not allocated here) *\/$/;"	m	struct:ppBed
chrom	inc/bigWig.h	/^     char *chrom;	\/* Current chromosome. *\/$/;"	m	struct:bigWigValsOnChrom
chrom	inc/bwgInternal.h	/^    char *chrom;			\/* Chromosome name. *\/$/;"	m	struct:bwgSection
chrom	inc/crTree.h	/^    char *chrom;	\/* Name of chromosome not allocated here. *\/$/;"	m	struct:crTreeItem
chrom	inc/peakCluster.h	/^    char *chrom;		\/* Chromosome.  Not allocated here. *\/$/;"	m	struct:peakCluster
chrom	inc/peakCluster.h	/^    char *chrom;		\/* Chromosome. Not allocated here. *\/$/;"	m	struct:peakItem
chrom	inc/splatAli.h	/^    char *chrom;	\/* Chromosome mapped to *\/$/;"	m	struct:splatAli
chrom	inc/vcf.h	/^    char *chrom;		\/\/ Reference assembly sequence name$/;"	m	struct:vcfRecord
chrom	inc/wormdna.h	/^    char *chrom;    \/* One of names returned by *\/$/;"	m	struct:wormFeature
chrom	lib/crTree.c	/^    char *chrom;	\/* Chromosome id. String memory owned in hash. *\/$/;"	m	struct:crTreeRange	file:
chromA	hg/inc/synMap.h	/^    char *chromA;	\/* chromosome in organism A *\/$/;"	m	struct:synMap
chromB	hg/inc/synMap.h	/^    char *chromB;	\/* chromosome in organism B *\/$/;"	m	struct:synMap
chromBins	hg/inc/chromBins.h	/^struct chromBins$/;"	s
chromBinsAdd	hg/lib/chromBins.c	/^void chromBinsAdd(struct chromBins *chromBins, char *chrom, int start, int end,$/;"	f
chromBinsFind	hg/lib/chromBins.c	/^struct binElement *chromBinsFind(struct chromBins *chromBins, char *chrom,$/;"	f
chromBinsFree	hg/lib/chromBins.c	/^void chromBinsFree(struct chromBins **chromBinsPtr)$/;"	f
chromBinsFreeFunc	hg/inc/chromBins.h	/^typedef void (chromBinsFreeFunc)();$/;"	t
chromBinsGet	hg/lib/chromBins.c	/^struct binKeeper *chromBinsGet(struct chromBins* chromBins, char *chrom,$/;"	f
chromBinsGetChroms	hg/lib/chromBins.c	/^struct slName *chromBinsGetChroms(struct chromBins *chromBins)$/;"	f
chromBinsNew	hg/lib/chromBins.c	/^struct chromBins *chromBinsNew(chromBinsFreeFunc *freeFunc)$/;"	f
chromBpt	inc/bbiFile.h	/^    struct bptFile *chromBpt;	\/* Index of chromosomes. *\/$/;"	m	struct:bbiFile	typeref:struct:bbiFile::bptFile
chromBpt	inc/crTree.h	/^    struct bptFile *chromBpt;	\/* Index of chromosomes. *\/$/;"	m	struct:crTreeFile	typeref:struct:crTreeFile::bptFile
chromColIx	inc/peakCluster.h	/^    int chromColIx;		\/* Chromosome column index. *\/$/;"	m	struct:peakSource
chromCount	hg/lib/chromKeeper.c	/^static int chromCount=0;$/;"	v	file:
chromCount	inc/itsa.h	/^    bits32 chromCount;	 \/* Total count of chromosomes\/contigs in file. *\/$/;"	m	struct:itsaFileHeader
chromCount	inc/splix.h	/^    bits32 chromCount;	\/* Total count of chromosomes\/contigs in file. *\/$/;"	m	struct:splixFileHeader
chromCount	inc/sufa.h	/^    bits32 chromCount;	\/* Total count of chromosomes\/contigs in file. *\/$/;"	m	struct:sufaFileHeader
chromCount	inc/sufx.h	/^    bits32 chromCount;	 \/* Total count of chromosomes\/contigs in file. *\/$/;"	m	struct:sufxFileHeader
chromEnd	hg/inc/affy10K.h	/^    unsigned chromEnd;	\/*   *\/$/;"	m	struct:affy10K
chromEnd	hg/inc/affyTranscriptome.h	/^    unsigned chromEnd;	\/* End in Chromosome *\/$/;"	m	struct:affyTranscriptome
chromEnd	hg/inc/agpFrag.h	/^    unsigned chromEnd;	\/* end position in chromosome *\/$/;"	m	struct:agpFrag
chromEnd	hg/inc/agpGap.h	/^    unsigned chromEnd;	\/* end position in chromosome *\/$/;"	m	struct:agpGap
chromEnd	hg/inc/alignInfo.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:alignInfo
chromEnd	hg/inc/allpredictions.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:allpredictions
chromEnd	hg/inc/arCOGs.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:arCOGs
chromEnd	hg/inc/bactigPos.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bactigPos
chromEnd	hg/inc/bed12Source.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed12Source
chromEnd	hg/inc/bed12wSeq.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed12wSeq
chromEnd	hg/inc/bed5FloatScore.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed5FloatScore
chromEnd	hg/inc/bed5Pval.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed5Pval
chromEnd	hg/inc/bed6FloatScore.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed6FloatScore
chromEnd	hg/inc/bed8Attrs.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed8Attrs
chromEnd	hg/inc/bedDetail.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bedDetail
chromEnd	hg/inc/bedGraph.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bedGraph
chromEnd	hg/inc/bgiSnp.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bgiSnp
chromEnd	hg/inc/blastzNet.h	/^    unsigned chromEnd;	\/* End on Human *\/$/;"	m	struct:blastzNet
chromEnd	hg/inc/ccdsGeneMap.h	/^    unsigned chromEnd;	\/* chromosome end of other gene *\/$/;"	m	struct:ccdsGeneMap
chromEnd	hg/inc/cddInfo.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:cddInfo
chromEnd	hg/inc/celeraCoverage.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:celeraCoverage
chromEnd	hg/inc/celeraDupPositive.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:celeraDupPositive
chromEnd	hg/inc/cgh.h	/^    unsigned chromEnd;	\/* position in nucleotides where featrure stops on chromsome *\/$/;"	m	struct:cgh
chromEnd	hg/inc/chr18deletions.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:chr18deletions
chromEnd	hg/inc/clonePos.h	/^    unsigned chromEnd;	\/* End in chromosome *\/$/;"	m	struct:clonePos
chromEnd	hg/inc/cnpIafrate.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpIafrate
chromEnd	hg/inc/cnpIafrate2.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpIafrate2
chromEnd	hg/inc/cnpLocke.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpLocke
chromEnd	hg/inc/cnpRedon.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpRedon
chromEnd	hg/inc/cnpSebat.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpSebat
chromEnd	hg/inc/cnpSebat2.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpSebat2
chromEnd	hg/inc/cnpSharp.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpSharp
chromEnd	hg/inc/cnpSharp2.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:cnpSharp2
chromEnd	hg/inc/codeBlast.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:codeBlast
chromEnd	hg/inc/coordConv.h	/^    unsigned chromEnd;	\/** End in Chromosome *\/$/;"	m	struct:coordConv
chromEnd	hg/inc/cpgIsland.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:cpgIsland
chromEnd	hg/inc/cpgIslandExt.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:cpgIslandExt
chromEnd	hg/inc/ctgPos.h	/^    unsigned chromEnd;	\/* End in chromosome *\/$/;"	m	struct:ctgPos
chromEnd	hg/inc/ctgPos2.h	/^    unsigned chromEnd;	\/* End in chromosome *\/$/;"	m	struct:ctgPos2
chromEnd	hg/inc/cytoBand.h	/^    unsigned chromEnd;	\/* End position in genoSeq *\/$/;"	m	struct:cytoBand
chromEnd	hg/inc/dbRIP.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:dbRIP
chromEnd	hg/inc/delConrad2.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:delConrad2
chromEnd	hg/inc/delHinds2.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:delHinds2
chromEnd	hg/inc/dgv.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:dgv
chromEnd	hg/inc/dless.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:dless
chromEnd	hg/inc/dvBed.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:dvBed
chromEnd	hg/inc/easyGene.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:easyGene
chromEnd	hg/inc/ensPhusionBlast.h	/^    unsigned chromEnd;	\/* End position in $Organism chromosome *\/$/;"	m	struct:ensPhusionBlast
chromEnd	hg/inc/est3.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:est3
chromEnd	hg/inc/estOrientInfo.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:estOrientInfo
chromEnd	hg/inc/estPair.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:estPair
chromEnd	hg/inc/exoFish.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:exoFish
chromEnd	hg/inc/exprBed.h	/^    unsigned chromEnd;	\/* position in nucleotides where featrure stops on chromsome *\/$/;"	m	struct:exprBed
chromEnd	hg/inc/fishClones.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:fishClones
chromEnd	hg/inc/flyreg.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:flyreg
chromEnd	hg/inc/flyreg2.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:flyreg2
chromEnd	hg/inc/fosEndPairs.h	/^    unsigned chromEnd;	\/* End position of fosmid in chromosome *\/$/;"	m	struct:fosEndPairs
chromEnd	hg/inc/gbProtAnn.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:gbProtAnn
chromEnd	hg/inc/gbRNAs.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:gbRNAs
chromEnd	hg/inc/gcPercent.h	/^    unsigned chromEnd;	\/* End position in genoSeq *\/$/;"	m	struct:gcPercent
chromEnd	hg/inc/genMapDb.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:genMapDb
chromEnd	hg/inc/gencodeIntron.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:gencodeIntron
chromEnd	hg/inc/genomicDups.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:genomicDups
chromEnd	hg/inc/genomicSuperDups.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:genomicSuperDups
chromEnd	hg/inc/gv.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:gvPos
chromEnd	hg/inc/gwasCatalog.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:gwasCatalog
chromEnd	hg/inc/hapmapAlleleFreq.h	/^    unsigned chromEnd;	\/* End position *\/$/;"	m	struct:hapmapAlleleFreq
chromEnd	hg/inc/hapmapAlleles.h	/^    unsigned chromEnd;	\/* End position in chrom (1 based) *\/$/;"	m	struct:hapmapAlleles
chromEnd	hg/inc/hapmapAllelesCombined.h	/^    unsigned chromEnd;	\/* End position in chrom (1 based) *\/$/;"	m	struct:hapmapAllelesCombined
chromEnd	hg/inc/hapmapAllelesOrtho.h	/^    unsigned chromEnd;	\/* End position in chrom (1 based) *\/$/;"	m	struct:hapmapAllelesOrtho
chromEnd	hg/inc/hapmapAllelesSummary.h	/^    unsigned chromEnd;	\/* End position in chrom (1 based) *\/$/;"	m	struct:hapmapAllelesSummary
chromEnd	hg/inc/hapmapLd.h	/^    unsigned chromEnd;	\/* chromEnd for last marker in list *\/$/;"	m	struct:hapmapLd
chromEnd	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned chromEnd;	\/* End position in chrom (1 based) *\/$/;"	m	struct:hapmapPhaseIIISummary
chromEnd	hg/inc/hapmapPrimateAlleles.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:hapmapPrimateAlleles
chromEnd	hg/inc/hapmapSnps.h	/^    unsigned chromEnd;	\/* End position in chrom (1 based) *\/$/;"	m	struct:hapmapSnps
chromEnd	hg/inc/hapmapSnpsCombined.h	/^    unsigned chromEnd;	\/* End position in chrom (1 based) *\/$/;"	m	struct:hapmapSnpsCombined
chromEnd	hg/inc/hgFind.h	/^     int chromEnd;		\/* End position in chromosome. *\/$/;"	m	struct:hgPos
chromEnd	hg/inc/hgdpGeo.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:hgdpGeo
chromEnd	hg/inc/humanParalog.h	/^    unsigned chromEnd;	\/* End on Human *\/$/;"	m	struct:humanParalog
chromEnd	hg/inc/isochores.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:isochores
chromEnd	hg/inc/itemAttr.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:itemAttr
chromEnd	hg/inc/jaxQTL.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:jaxQTL
chromEnd	hg/inc/jaxQTL2.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:jaxQTL2
chromEnd	hg/inc/jaxQTL3.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:jaxQTL3
chromEnd	hg/inc/jgiGene.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:jgiGene
chromEnd	hg/inc/landmark.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:landmark
chromEnd	hg/inc/ld.h	/^    unsigned chromEnd;	\/* chromEnd for last marker in list *\/$/;"	m	struct:ld
chromEnd	hg/inc/ld2.h	/^    unsigned chromEnd;	\/* chromEnd for last marker in list *\/$/;"	m	struct:ld2
chromEnd	hg/inc/lfs.h	/^    unsigned chromEnd;	\/* End position of clone in chromosome *\/$/;"	m	struct:lfs
chromEnd	hg/inc/lowelabPfamHit.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:lowelabPfamHits
chromEnd	hg/inc/mafFrames.h	/^    unsigned chromEnd;	\/* End range in chromosome *\/$/;"	m	struct:mafFrames
chromEnd	hg/inc/mafSummary.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:mafSummary
chromEnd	hg/inc/makeItemsItem.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:makeItemsItem
chromEnd	hg/inc/mammalPsg.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:mammalPsg
chromEnd	hg/inc/mapSts.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:mapSts
chromEnd	hg/inc/mcnBreakpoints.h	/^    unsigned chromEnd;	\/* End position in genoSeq *\/$/;"	m	struct:mcnBreakpoints
chromEnd	hg/inc/megablastInfo.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:megablastInfo
chromEnd	hg/inc/mouseOrtho.h	/^    unsigned chromEnd;	\/* End on Human *\/$/;"	m	struct:mouseOrtho
chromEnd	hg/inc/mouseSyn.h	/^    unsigned chromEnd;	\/* End in chromosome *\/$/;"	m	struct:mouseSyn
chromEnd	hg/inc/mouseSynWhd.h	/^    unsigned chromEnd;	\/* End position in human chromosome *\/$/;"	m	struct:mouseSynWhd
chromEnd	hg/inc/ncRna.h	/^    unsigned chromEnd;	\/* gnomic end position *\/$/;"	m	struct:ncRna
chromEnd	hg/inc/omicia.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:omiciaAuto
chromEnd	hg/inc/omicia.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:omiciaHand
chromEnd	hg/inc/oreganno.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:oreganno
chromEnd	hg/inc/oregannoOther.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:oregannoOther
chromEnd	hg/inc/orthoAlleles.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:orthoAlleles
chromEnd	hg/inc/pairedTagAlign.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:pairedTagAlign
chromEnd	hg/inc/peptideMapping.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:peptideMapping
chromEnd	hg/inc/pgPhenoAssoc.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:pgPhenoAssoc
chromEnd	hg/inc/pgPolyphenPred.h	/^    unsigned *chromEnd;	\/* End position in chrom *\/$/;"	m	struct:pgPolyphenPred
chromEnd	hg/inc/pgSiftPred.h	/^    unsigned *chromEnd;	\/* End position in chrom *\/$/;"	m	struct:pgSiftPred
chromEnd	hg/inc/pgSnp.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:pgSnp
chromEnd	hg/inc/plasEndPairs.h	/^    unsigned chromEnd;	\/* End position of clone in chromosome *\/$/;"	m	struct:plasEndPairs
chromEnd	hg/inc/protVar.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:protVarPos
chromEnd	hg/inc/pscreen.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:pscreen
chromEnd	hg/inc/pseudoGeneLink.h	/^    unsigned chromEnd;	\/* pseudogene alignment end position *\/$/;"	m	struct:pseudoGeneLink
chromEnd	hg/inc/putaInfo.h	/^    unsigned chromEnd;	\/* stamp's chromEnd *\/$/;"	m	struct:putaInfo
chromEnd	hg/inc/recombRate.h	/^    unsigned chromEnd;	\/* End position in genoSeq *\/$/;"	m	struct:recombRate
chromEnd	hg/inc/recombRateMouse.h	/^    unsigned chromEnd;	\/* End position in genoSeq *\/$/;"	m	struct:recombRateMouse
chromEnd	hg/inc/recombRateRat.h	/^    unsigned chromEnd;	\/* End position in genoSeq *\/$/;"	m	struct:recombRateRat
chromEnd	hg/inc/retroMrnaInfo.h	/^    unsigned chromEnd;	\/* pseudogene alignment end position col3 *\/$/;"	m	struct:retroMrnaInfo
chromEnd	hg/inc/rgdQtl.h	/^    unsigned chromEnd;	\/* End in chromosome *\/$/;"	m	struct:rgdQtl
chromEnd	hg/inc/rikenCluster.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:rikenUcscCluster
chromEnd	hg/inc/rnaGene.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:rnaGene
chromEnd	hg/inc/rnaGenes.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:rnaGenes
chromEnd	hg/inc/rnaGroup.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:rnaGroup
chromEnd	hg/inc/rnaHybridization.h	/^    unsigned chromEnd;	\/* End position in chromosome for pattern region *\/$/;"	m	struct:rnaHybridization
chromEnd	hg/inc/rnaPLFold.h	/^    unsigned chromEnd;	\/* chromEnd for last marker in list *\/$/;"	m	struct:rnaPLFold
chromEnd	hg/inc/rnaSecStr.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:rnaSecStr
chromEnd	hg/inc/roughAli.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:roughAli
chromEnd	hg/inc/sample.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:sample
chromEnd	hg/inc/scoredRef.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:scoredRef
chromEnd	hg/inc/sgdClone.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:sgdClone
chromEnd	hg/inc/sgdOther.h	/^    int chromEnd;	\/* End (non-inclusive) *\/$/;"	m	struct:sgdOther
chromEnd	hg/inc/simpleNucDiff.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:simpleNucDiff
chromEnd	hg/inc/simpleRepeat.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:simpleRepeat
chromEnd	hg/inc/snoRNAs.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:snoRNAs
chromEnd	hg/inc/snp.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:snp
chromEnd	hg/inc/snp125.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:snp125
chromEnd	hg/inc/snp125.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:snp125Extended
chromEnd	hg/inc/snp125Exceptions.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:snp125Exceptions
chromEnd	hg/inc/snp132Ext.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:snp132Ext
chromEnd	hg/inc/snpMap.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:snpMap
chromEnd	hg/inc/snpTmp.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:snpTmp
chromEnd	hg/inc/softPromoter.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:softPromoter
chromEnd	hg/inc/stsMap.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:stsMap
chromEnd	hg/inc/stsMapMouse.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:stsMapMouse
chromEnd	hg/inc/stsMapMouseNew.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:stsMapMouseNew
chromEnd	hg/inc/stsMapRat.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:stsMapRat
chromEnd	hg/inc/stsMarker.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:stsMarker
chromEnd	hg/inc/switchDbTss.h	/^    unsigned chromEnd;	\/* End in Chromosome *\/$/;"	m	struct:switchDbTss
chromEnd	hg/inc/synteny100000.h	/^    unsigned chromEnd;	\/* End on Human *\/$/;"	m	struct:synteny100000
chromEnd	hg/inc/syntenyBerk.h	/^    unsigned chromEnd;	\/* End on Human *\/$/;"	m	struct:syntenyBerk
chromEnd	hg/inc/syntenySanger.h	/^    unsigned chromEnd;	\/* End on Human *\/$/;"	m	struct:syntenySanger
chromEnd	hg/inc/tRNAs.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:tRNAs
chromEnd	hg/inc/tagAlign.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:tagAlign
chromEnd	hg/inc/tfbsCons.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:tfbsCons
chromEnd	hg/inc/tfbsConsSites.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:tfbsConsSites
chromEnd	hg/inc/tigrCmrGene.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:tigrCmrGene
chromEnd	hg/inc/transMapSrc.h	/^    unsigned chromEnd;	\/* chrom end location *\/$/;"	m	struct:transMapSrc
chromEnd	hg/inc/transRegCode.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:transRegCode
chromEnd	hg/inc/transRegCodeProbe.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:transRegCodeProbe
chromEnd	hg/inc/txCluster.h	/^    int chromEnd;	\/* End coordinate, non inclusive. *\/$/;"	m	struct:txCluster
chromEnd	hg/inc/txEdgeBed.h	/^    int chromEnd;	\/* End position, non-inclusive *\/$/;"	m	struct:txEdgeBed
chromEnd	hg/inc/txEdgeOrtho.h	/^    int chromEnd;	\/* End position, non-inclusive *\/$/;"	m	struct:txEdgeOrtho
chromEnd	hg/inc/ucscRetroInfo.h	/^    unsigned chromEnd;	\/* pseudogene alignment end position col3 *\/$/;"	m	struct:ucscRetroInfo
chromEnd	hg/inc/variant.h	/^    unsigned chromEnd;	\/* End position in chrom *\/$/;"	m	struct:variant
chromEnd	hg/inc/variome.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:variome
chromEnd	hg/inc/vntr.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:vntr
chromEnd	hg/inc/wabAli.h	/^    unsigned chromEnd;	\/* End in chromosome. *\/$/;"	m	struct:wabAli
chromEnd	hg/inc/wgRna.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:wgRna
chromEnd	hg/inc/wiggle.h	/^    unsigned chromEnd;		\/* End position in chromosome *\/$/;"	m	struct:wiggle
chromEnd	hg/inc/wiggle.h	/^    unsigned chromEnd;      \/* End position, last value *\/$/;"	m	struct:wiggleData
chromEnd	hg/inc/wiggle.h	/^    unsigned chromEnd;      \/* End position, last value *\/$/;"	m	struct:wiggleStats
chromEnd	hg/inc/wikiTrack.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:wikiTrack
chromEnd	hg/inc/zdobnovSynt.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:zdobnovSynt
chromEnd	hg/lib/lowelabPfamHit.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:lowelabPfamHits
chromEnd	hg/lib/mafGene.c	/^    int chromEnd;$/;"	m	struct:exonInfo	file:
chromEnd	hg/lib/snoRNAs.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:snoRNAs
chromEnd	hg/lib/wigAsciiToBinary.c	/^static unsigned long long chromEnd = 0;	\/* for table row data *\/$/;"	v	file:
chromEnd	inc/basicBed.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed
chromEnd	inc/basicBed.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed3
chromEnd	inc/basicBed.h	/^    unsigned chromEnd;	\/* End position in chromosome *\/$/;"	m	struct:bed4
chromEnd	inc/cda.h	/^    int chromStart, chromEnd;$/;"	m	struct:cdaAli
chromEnd	inc/peakCluster.h	/^    int chromStart, chromEnd;	\/* Half open coordinates. *\/$/;"	m	struct:peakCluster
chromEnd	inc/peakCluster.h	/^    int chromStart,chromEnd;	\/* Half open coordinates. *\/$/;"	m	struct:peakItem
chromEnd	inc/splatAli.h	/^    int chromEnd;	\/* End position in genome (one based) *\/$/;"	m	struct:splatAli
chromEnd	inc/vcf.h	/^    unsigned int chromEnd;	\/\/ End offset in chrom$/;"	m	struct:vcfRecord
chromEndA	hg/inc/synMap.h	/^    unsigned chromEndA;	\/* chromosome end in orgainsm A *\/$/;"	m	struct:synMap
chromEndB	hg/inc/synMap.h	/^    unsigned chromEndB;	\/* chromosome end in orgainsm B *\/$/;"	m	struct:synMap
chromEndFilter	hg/inc/bed.h	/^    enum numericFilterType chromEndFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
chromEndTarget	hg/inc/rnaHybridization.h	/^    unsigned chromEndTarget;	\/* End position in chromosome for target region *\/$/;"	m	struct:rnaHybridization
chromEndVals	hg/inc/bed.h	/^    int *chromEndVals;$/;"	m	struct:bedFilter
chromField	hg/inc/hdb.h	/^    char chromField[HDB_MAX_FIELD_STRING];	\/* Name of chromosome field. *\/$/;"	m	struct:hTableInfo
chromField	hg/lib/annoStreamDb.c	/^    char *chromField;			\/\/ Name of chrom-ish column in table$/;"	m	struct:annoStreamDb	file:
chromFilter	hg/inc/bed.h	/^    enum stringFilterType chromFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::stringFilterType
chromGraph	hg/inc/chromGraph.h	/^struct chromGraph$/;"	s
chromGraphBin	hg/inc/chromGraph.h	/^struct chromGraphBin$/;"	s
chromGraphBinFree	hg/lib/chromGraph.c	/^void chromGraphBinFree(struct chromGraphBin **pCgb)$/;"	f
chromGraphBinNextChrom	hg/lib/chromGraph.c	/^boolean chromGraphBinNextChrom(struct chromGraphBin *cgb)$/;"	f
chromGraphBinNextVal	hg/lib/chromGraph.c	/^boolean chromGraphBinNextVal(struct chromGraphBin *cgb)$/;"	f
chromGraphBinOpen	hg/lib/chromGraph.c	/^struct chromGraphBin *chromGraphBinOpen(char *path)$/;"	f
chromGraphBinRewind	hg/lib/chromGraph.c	/^void chromGraphBinRewind(struct chromGraphBin *cgb)$/;"	f
chromGraphBinSeekToChrom	hg/lib/chromGraph.c	/^boolean chromGraphBinSeekToChrom(struct chromGraphBin *cgb, char *chromName)$/;"	f
chromGraphBinToBed3	hg/lib/chromGraph.c	/^struct bed3 *chromGraphBinToBed3(char *fileName, double threshold)$/;"	f
chromGraphBinaryFileName	hg/lib/chromGraph.c	/^char *chromGraphBinaryFileName(char *trackName, struct sqlConnection *conn)$/;"	f
chromGraphCmp	hg/lib/chromGraph.c	/^int chromGraphCmp(const void *va, const void *vb)$/;"	f
chromGraphCommaIn	hg/lib/chromGraph.c	/^struct chromGraph *chromGraphCommaIn(char **pS, struct chromGraph *ret)$/;"	f
chromGraphCommaOut	hg/inc/chromGraph.h	66;"	d
chromGraphDataRange	hg/lib/chromGraph.c	/^void chromGraphDataRange(char *trackName, struct sqlConnection *conn,$/;"	f
chromGraphDefaultGapToFill	hg/inc/chromGraph.h	77;"	d
chromGraphFactory	hg/lib/chromGraphFactory.c	/^struct customFactory chromGraphFactory = $/;"	v	typeref:struct:customFactory
chromGraphFree	hg/lib/chromGraph.c	/^void chromGraphFree(struct chromGraph **pEl)$/;"	f
chromGraphFreeList	hg/lib/chromGraph.c	/^void chromGraphFreeList(struct chromGraph **pList)$/;"	f
chromGraphGetMinMax	hg/lib/chromGraph.c	/^void chromGraphGetMinMax(struct chromGraph *list, double *pMin, double *pMax)$/;"	f
chromGraphListAll	hg/lib/chromGraph.c	/^struct slName *chromGraphListAll(struct sqlConnection *conn)$/;"	f
chromGraphLoad	hg/lib/chromGraph.c	/^struct chromGraph *chromGraphLoad(char **row)$/;"	f
chromGraphLoadAll	hg/lib/chromGraph.c	/^struct chromGraph *chromGraphLoadAll(char *fileName) $/;"	f
chromGraphLoadAllByChar	hg/lib/chromGraph.c	/^struct chromGraph *chromGraphLoadAllByChar(char *fileName, char chopper) $/;"	f
chromGraphLoadAllByTab	hg/inc/chromGraph.h	44;"	d
chromGraphLoader	hg/lib/chromGraphFactory.c	/^static struct customTrack *chromGraphLoader(struct customFactory *fac,  $/;"	f	file:
chromGraphOutput	hg/lib/chromGraph.c	/^void chromGraphOutput(struct chromGraph *el, FILE *f, char sep, char lastSep) $/;"	f
chromGraphParseMinMax	hg/lib/chromGraph.c	/^void chromGraphParseMinMax(char *trackName, char *text, $/;"	f
chromGraphParser	hg/lib/chromGraphFactory.c	/^struct customTrack *chromGraphParser(char *genomeDb, struct customPp *cpp,$/;"	f
chromGraphRecognizer	hg/lib/chromGraphFactory.c	/^static boolean chromGraphRecognizer(struct customFactory *fac,$/;"	f	file:
chromGraphSettings	hg/inc/chromGraph.h	/^struct chromGraphSettings$/;"	s
chromGraphSettingsFillFromHash	hg/lib/chromGraph.c	/^void chromGraphSettingsFillFromHash(struct chromGraphSettings *cgs, $/;"	f
chromGraphSettingsGet	hg/lib/chromGraph.c	/^struct chromGraphSettings *chromGraphSettingsGet(char *trackName,$/;"	f
chromGraphSig	inc/sig.h	66;"	d
chromGraphStaticLoad	hg/lib/chromGraph.c	/^void chromGraphStaticLoad(char **row, struct chromGraph *ret)$/;"	f
chromGraphSwapSig	inc/sig.h	69;"	d
chromGraphTabOut	hg/inc/chromGraph.h	63;"	d
chromGraphToBin	hg/lib/chromGraph.c	/^void chromGraphToBin(struct chromGraph *list, char *fileName)$/;"	f
chromGraphToBinGetMinMax	hg/lib/chromGraph.c	/^void chromGraphToBinGetMinMax(struct chromGraph *list, char *fileName,$/;"	f
chromGraphVarName	hg/lib/chromGraph.c	/^void chromGraphVarName(char *track, char *var, $/;"	f
chromGraphVarNameMaxSize	hg/inc/chromGraph.h	104;"	d
chromHash	hg/inc/chromGraph.h	/^    struct hash *chromHash;	\/* Hash of all chromosomes\/positions *\/$/;"	m	struct:chromGraphBin	typeref:struct:chromGraphBin::hash
chromHash	hg/inc/genoLay.h	/^    struct hash *chromHash;		\/* Hash of chromosomes. *\/$/;"	m	struct:genoLay	typeref:struct:genoLay::hash
chromHash	inc/metaWig.h	/^    struct hash *chromHash; 		\/* Hash value is first section in that chrom *\/$/;"	m	struct:metaWig	typeref:struct:metaWig::hash
chromHash	inc/peakCluster.h	/^    struct hash *chromHash;	   \/* Key is chromosome, value is a rbTree of items. *\/$/;"	m	struct:peakClusterMaker	typeref:struct:peakClusterMaker::hash
chromHashFromDatabase	hg/lib/chromInfo.c	/^struct hash *chromHashFromDatabase(char *db) $/;"	f
chromHashFromFile	hg/lib/chromInfo.c	/^struct hash *chromHashFromFile(char *fileName) $/;"	f
chromHeight	hg/inc/genoLay.h	/^    int chromHeight;			\/* Height of chromosome ideograms. *\/$/;"	m	struct:genoLay
chromId	inc/bbiFile.h	/^    bits32 chromId;		\/* ID of associated chromosome. *\/$/;"	m	struct:bbiSummary
chromId	inc/bbiFile.h	/^    bits32 chromId;		\/* ID of associated chromosome. *\/$/;"	m	struct:bbiSummaryOnDisk
chromId	inc/bbiFile.h	/^    bits32 chromId;	\/* Chromosome ID *\/$/;"	m	struct:bbiChromIdSize
chromId	inc/bigBed.h	/^    bits32 chromId;		\/* Chromosome ID. *\/$/;"	m	struct:ppBed
chromId	inc/bwgInternal.h	/^    bits32 chromId;			\/* Unique small integer value for chromosome. *\/$/;"	m	struct:bwgSection
chromId	inc/bwgInternal.h	/^    bits32 chromId;	\/* Chromosome short identifier. *\/$/;"	m	struct:bwgSectionHead
chromIds	lib/wormdna.c	/^static char *chromIds[] = {"i", "ii", "iii", "iv", "v", "x", "m", };$/;"	v	file:
chromInfo	hg/inc/chromInfo.h	/^struct chromInfo$/;"	s
chromInfoAddOneFromFile	hg/lib/chromInfo.c	/^struct chromInfo *chromInfoAddOneFromFile(char **row)$/;"	f
chromInfoCommaIn	hg/lib/chromInfo.c	/^struct chromInfo *chromInfoCommaIn(char **pS, struct chromInfo *ret)$/;"	f
chromInfoCommaOut	hg/inc/chromInfo.h	57;"	d
chromInfoFree	hg/lib/chromInfo.c	/^void chromInfoFree(struct chromInfo **pEl)$/;"	f
chromInfoFreeList	hg/lib/chromInfo.c	/^void chromInfoFreeList(struct chromInfo **pList)$/;"	f
chromInfoHash	hg/lib/chromGraphFactory.c	/^static struct hash *chromInfoHash(struct sqlConnection *conn)$/;"	f	file:
chromInfoListFromFile	hg/lib/chromInfo.c	/^struct chromInfo *chromInfoListFromFile(char *fileName) $/;"	f
chromInfoLoad	hg/lib/chromInfo.c	/^struct chromInfo *chromInfoLoad(char **row)$/;"	f
chromInfoLoadAll	hg/lib/chromInfo.c	/^struct chromInfo *chromInfoLoadAll(char *fileName) $/;"	f
chromInfoLoadAllByChar	hg/lib/chromInfo.c	/^struct chromInfo *chromInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
chromInfoLoadAllByTab	hg/inc/chromInfo.h	35;"	d
chromInfoOutput	hg/lib/chromInfo.c	/^void chromInfoOutput(struct chromInfo *el, FILE *f, char sep, char lastSep) $/;"	f
chromInfoStaticLoad	hg/lib/chromInfo.c	/^void chromInfoStaticLoad(char **row, struct chromInfo *ret)$/;"	f
chromInfoTabOut	hg/inc/chromInfo.h	54;"	d
chromInserts	hg/inc/chromInserts.h	/^struct chromInserts$/;"	s
chromInsertsDefaultGapSize	hg/lib/chromInserts.c	/^static int chromInsertsDefaultGapSize = 200000;$/;"	v	file:
chromInsertsGapSize	hg/lib/chromInserts.c	/^int chromInsertsGapSize(struct chromInserts *chromInserts, char *contig, boolean isFirst)$/;"	f
chromInsertsRead	hg/lib/chromInserts.c	/^struct chromInserts *chromInsertsRead(char *fileName, struct hash *insertsHash)$/;"	f
chromInsertsSetDefaultGapSize	hg/lib/chromInserts.c	/^void chromInsertsSetDefaultGapSize(int size)$/;"	f
chromInvert	hg/inc/bed.h	/^    boolean chromInvert;$/;"	m	struct:bedFilter
chromIx	hg/inc/tilingPath.h	/^    int chromIx;	\/* Number of clone in tiling path starting chrom start *\/$/;"	m	struct:tilingPath
chromIx	hg/lib/annoStreamDb.c	/^    int chromIx;			\/\/ Index of chrom-ish col in autoSql or bin-less table$/;"	m	struct:annoStreamDb	file:
chromIx	inc/cda.h	/^    bits16 chromIx;                 \/* On disk as just a UBYTE *\/$/;"	m	struct:cdaAli
chromIx	inc/cirTree.h	/^    bits32 chromIx;	\/* Chromosome id. *\/$/;"	m	struct:cirTreeRange
chromIx	inc/crudeali.h	/^    int chromIx;$/;"	m	struct:crudeAli
chromIx	inc/gdf.h	/^    UBYTE chromIx;$/;"	m	struct:gdfGene
chromIx	jkOwnLib/crudeali.c	/^static int chromIx(struct nt4Seq *one, struct nt4Seq **chrome, int chromeCount)$/;"	f	file:
chromIx	lib/crTree.c	/^     bits32 chromIx;			\/* Associated chromosome index. *\/$/;"	m	struct:ciItem	file:
chromKeeperAdd	hg/lib/chromKeeper.c	/^void chromKeeperAdd(char *chrom, int chromStart, int chromEnd, void *val)$/;"	f
chromKeeperFind	hg/lib/chromKeeper.c	/^struct binElement *chromKeeperFind(char *chrom, int chromStart, int chromEnd)$/;"	f
chromKeeperInit	hg/lib/chromKeeper.c	/^void chromKeeperInit(char *db)$/;"	f
chromKeeperInitChroms	hg/lib/chromKeeper.c	/^void chromKeeperInitChroms(struct slName *nameList, int maxChromSize)$/;"	f
chromKeeperRemove	hg/lib/chromKeeper.c	/^void chromKeeperRemove(char *chrom, int chromStart, int chromEnd, void *val)$/;"	f
chromLengthFilter	hg/inc/bed.h	/^    enum numericFilterType chromLengthFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
chromLengthVals	hg/inc/bed.h	/^    int *chromLengthVals;$/;"	m	struct:bedFilter
chromList	hg/inc/chromGraph.h	/^    struct cgbChrom *chromList;	\/* List of chromosomes\/positions *\/$/;"	m	struct:chromGraphBin	typeref:struct:chromGraphBin::cgbChrom
chromList	hg/inc/genoLay.h	/^    struct genoLayChrom *chromList;	\/* List of all chromosomes. *\/$/;"	m	struct:genoLay	typeref:struct:genoLay::genoLayChrom
chromList	hg/inc/genomeRangeTreeFile.h	/^    struct hashEl *chromList; \/* Ordered list of (chrom,rangeTree) hashEls  *\/$/;"	m	struct:genomeRangeTreeFile	typeref:struct:genomeRangeTreeFile::hashEl
chromMap	hg/lib/liftOver.c	/^struct chromMap$/;"	s	file:
chromName	hg/lib/wigAsciiToBinary.c	/^static char *chromName = (char *)NULL;	\/* pseudo bed-6 data to follow *\/$/;"	v	file:
chromNameAndSizeHashFromList	hg/lib/chromInfo.c	/^struct hash *chromNameAndSizeHashFromList(struct chromInfo *ci)$/;"	f
chromNameCallback	lib/bbiRead.c	/^static void chromNameCallback(void *context, void *key, int keySize, void *val, int valSize)$/;"	f	file:
chromNameCallbackContext	lib/bbiRead.c	/^struct chromNameCallbackContext$/;"	s	file:
chromNames	hg/lib/chromKeeper.c	/^static char **chromNames = NULL;$/;"	v	file:
chromNames	inc/itsa.h	/^    char **chromNames;	\/* Name of each chromosome. *\/$/;"	m	struct:itsa
chromNames	inc/splix.h	/^    char **chromNames;	\/* Name of each chromosome. *\/$/;"	m	struct:splix
chromNames	inc/sufa.h	/^    char **chromNames;	\/* Name of each chromosome. *\/$/;"	m	struct:sufa
chromNames	inc/sufx.h	/^    char **chromNames;	\/* Name of each chromosome. *\/$/;"	m	struct:sufx
chromNames	lib/flydna.c	/^static char *chromNames[] = {"adh"};$/;"	v	file:
chromNamesSize	inc/itsa.h	/^    bits32 chromNamesSize;	\/* Size of names of all contigs (including zeroes at end),$/;"	m	struct:itsaFileHeader
chromNamesSize	inc/splix.h	/^    bits32 chromNamesSize;	\/* Size of names of all contigs (including zeroes at end),$/;"	m	struct:splixFileHeader
chromNamesSize	inc/sufa.h	/^    bits32 chromNamesSize;	\/* Size of names of all contigs (including zeroes at end),$/;"	m	struct:sufaFileHeader
chromNamesSize	inc/sufx.h	/^    bits32 chromNamesSize;	\/* Size of names of all contigs (including zeroes at end),$/;"	m	struct:sufxFileHeader
chromOffset	inc/crTree.h	/^    bits64 chromOffset;		\/* Offset of chromosome index. *\/$/;"	m	struct:crTreeFile
chromOffsetPos	lib/crTree.c	41;"	d	file:
chromOffsetY	hg/inc/genoLay.h	/^    int chromOffsetY;			\/* Start of chromosome ideograms. *\/$/;"	m	struct:genoLay
chromOffsets	inc/itsa.h	/^    bits32 *chromOffsets;  \/* Offset of each chromosome's DNA *\/$/;"	m	struct:itsa
chromOffsets	inc/splix.h	/^    bits32 *chromOffsets;	\/* Offset of each chromosome's DNA *\/$/;"	m	struct:splix
chromOffsets	inc/sufa.h	/^    bits32 *chromOffsets;  \/* Offset of each chromosome's DNA *\/$/;"	m	struct:sufa
chromOffsets	inc/sufx.h	/^    bits32 *chromOffsets;  \/* Offset of each chromosome's DNA *\/$/;"	m	struct:sufx
chromPos	hg/inc/affyTransLifted.h	/^    unsigned chromPos;	\/* Coordinate in chromosome (location of central base of the 25-mer) *\/$/;"	m	struct:affyTransLifted
chromPos	hg/lib/chromGraphFactory.c	/^struct chromPos$/;"	s	file:
chromRanges	hg/lib/chromKeeper.c	/^struct binKeeper **chromRanges = NULL;$/;"	v	typeref:struct:binKeeper
chromSeqFileExists	hg/lib/chromInfo.c	/^boolean chromSeqFileExists(char *db, char *chrom)$/;"	f
chromSize	inc/bbiFile.h	/^    bits32 chromSize;	\/* Chromosome Size *\/$/;"	m	struct:bbiChromIdSize
chromSize	inc/bigWig.h	/^     long chromSize;	\/* Size of current chromosome. *\/$/;"	m	struct:bigWigValsOnChrom
chromSizes	inc/annoGratorQuery.h	/^    struct hash *chromSizes;		\/\/ Assembly seq sizes, must be valid for all inputs$/;"	m	struct:annoGratorQuery	typeref:struct:annoGratorQuery::hash
chromSizes	inc/itsa.h	/^    bits32 *chromSizes;    \/* Size of each chromosome.  No deallocation required (in memmap) *\/$/;"	m	struct:itsa
chromSizes	inc/splix.h	/^    bits32 *chromSizes;    \/* Size of each chromosome.  No deallocation required (in memmap) *\/$/;"	m	struct:splix
chromSizes	inc/sufa.h	/^    bits32 *chromSizes;    \/* Size of each chromosome.  No deallocation required (in memmap) *\/$/;"	m	struct:sufa
chromSizes	inc/sufx.h	/^    bits32 *chromSizes;    \/* Size of each chromosome.  No deallocation required (in memmap) *\/$/;"	m	struct:sufx
chromStart	hg/inc/affy10K.h	/^    unsigned chromStart;	\/*   *\/$/;"	m	struct:affy10K
chromStart	hg/inc/affyTranscriptome.h	/^    unsigned chromStart;	\/* Start in Chromosome *\/$/;"	m	struct:affyTranscriptome
chromStart	hg/inc/agpFrag.h	/^    unsigned chromStart;	\/* start position in chromosome *\/$/;"	m	struct:agpFrag
chromStart	hg/inc/agpGap.h	/^    unsigned chromStart;	\/* start position in chromosome *\/$/;"	m	struct:agpGap
chromStart	hg/inc/alignInfo.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:alignInfo
chromStart	hg/inc/alleleFreqs.h	/^    int chromStart;	\/*  pos			101809619 *\/$/;"	m	struct:alleleFreqs
chromStart	hg/inc/allpredictions.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:allpredictions
chromStart	hg/inc/arCOGs.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:arCOGs
chromStart	hg/inc/bactigPos.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bactigPos
chromStart	hg/inc/bed12Source.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed12Source
chromStart	hg/inc/bed12wSeq.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed12wSeq
chromStart	hg/inc/bed5FloatScore.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed5FloatScore
chromStart	hg/inc/bed5Pval.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed5Pval
chromStart	hg/inc/bed6FloatScore.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed6FloatScore
chromStart	hg/inc/bed8Attrs.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed8Attrs
chromStart	hg/inc/bedDetail.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bedDetail
chromStart	hg/inc/bedGraph.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bedGraph
chromStart	hg/inc/bgiSnp.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bgiSnp
chromStart	hg/inc/blastzNet.h	/^    unsigned chromStart;	\/* Start on Human *\/$/;"	m	struct:blastzNet
chromStart	hg/inc/ccdsGeneMap.h	/^    unsigned chromStart;	\/* chromosome start of other gene *\/$/;"	m	struct:ccdsGeneMap
chromStart	hg/inc/cddInfo.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:cddInfo
chromStart	hg/inc/celeraCoverage.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:celeraCoverage
chromStart	hg/inc/celeraDupPositive.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:celeraDupPositive
chromStart	hg/inc/cgh.h	/^    unsigned chromStart;	\/* position in nucleotides where feature starts on chromosome *\/$/;"	m	struct:cgh
chromStart	hg/inc/chr18deletions.h	/^    int chromStart;	\/* Start position in chrom - negative 1 if unpositioned *\/$/;"	m	struct:chr18deletions
chromStart	hg/inc/chromGraph.h	/^    bits32 chromStart;	\/* Current position. *\/$/;"	m	struct:chromGraphBin
chromStart	hg/inc/chromGraph.h	/^    int chromStart;	\/* Start coordinate *\/$/;"	m	struct:chromGraph
chromStart	hg/inc/clonePos.h	/^    unsigned chromStart;	\/* Start in chromosome *\/$/;"	m	struct:clonePos
chromStart	hg/inc/cnpIafrate.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpIafrate
chromStart	hg/inc/cnpIafrate2.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpIafrate2
chromStart	hg/inc/cnpLocke.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpLocke
chromStart	hg/inc/cnpRedon.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpRedon
chromStart	hg/inc/cnpSebat.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpSebat
chromStart	hg/inc/cnpSebat2.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpSebat2
chromStart	hg/inc/cnpSharp.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpSharp
chromStart	hg/inc/cnpSharp2.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:cnpSharp2
chromStart	hg/inc/codeBlast.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:codeBlast
chromStart	hg/inc/coordConv.h	/^    unsigned chromStart;	\/** Start in Chromosome *\/$/;"	m	struct:coordConv
chromStart	hg/inc/cpgIsland.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:cpgIsland
chromStart	hg/inc/cpgIslandExt.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:cpgIslandExt
chromStart	hg/inc/ctgPos.h	/^    unsigned chromStart;	\/* Start in chromosome *\/$/;"	m	struct:ctgPos
chromStart	hg/inc/ctgPos2.h	/^    unsigned chromStart;	\/* Start in chromosome *\/$/;"	m	struct:ctgPos2
chromStart	hg/inc/cytoBand.h	/^    unsigned chromStart;	\/* Start position in genoSeq *\/$/;"	m	struct:cytoBand
chromStart	hg/inc/dbRIP.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:dbRIP
chromStart	hg/inc/delConrad2.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:delConrad2
chromStart	hg/inc/delHinds2.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:delHinds2
chromStart	hg/inc/dgv.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:dgv
chromStart	hg/inc/dless.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:dless
chromStart	hg/inc/dvBed.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:dvBed
chromStart	hg/inc/easyGene.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:easyGene
chromStart	hg/inc/ensPhusionBlast.h	/^    unsigned chromStart;	\/* Start position in $Organism chromosome *\/$/;"	m	struct:ensPhusionBlast
chromStart	hg/inc/est3.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:est3
chromStart	hg/inc/estOrientInfo.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:estOrientInfo
chromStart	hg/inc/estPair.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:estPair
chromStart	hg/inc/exoFish.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:exoFish
chromStart	hg/inc/exprBed.h	/^    unsigned chromStart;	\/* position in nucleotides where feature starts on chromosome *\/$/;"	m	struct:exprBed
chromStart	hg/inc/fishClones.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:fishClones
chromStart	hg/inc/flyreg.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:flyreg
chromStart	hg/inc/flyreg2.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:flyreg2
chromStart	hg/inc/fosEndPairs.h	/^    unsigned chromStart;	\/* Start position of fosmid in chromosome *\/$/;"	m	struct:fosEndPairs
chromStart	hg/inc/gbProtAnn.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:gbProtAnn
chromStart	hg/inc/gbRNAs.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:gbRNAs
chromStart	hg/inc/gcPercent.h	/^    unsigned chromStart;	\/* Start position in genoSeq *\/$/;"	m	struct:gcPercent
chromStart	hg/inc/genMapDb.h	/^    int chromStart;	\/* Start position in chrom - negative 1 if unpositioned *\/$/;"	m	struct:genMapDb
chromStart	hg/inc/gencodeIntron.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:gencodeIntron
chromStart	hg/inc/genomicDups.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:genomicDups
chromStart	hg/inc/genomicSuperDups.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:genomicSuperDups
chromStart	hg/inc/genotype.h	/^    int chromStart;	\/*  pos		# 91995917 *\/$/;"	m	struct:genotype
chromStart	hg/inc/genotypeFreqs.h	/^    int chromStart;	\/* pos		101809619 *\/$/;"	m	struct:genotypeFreqs
chromStart	hg/inc/gv.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:gvPos
chromStart	hg/inc/gwasCatalog.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:gwasCatalog
chromStart	hg/inc/hapmapAlleleFreq.h	/^    unsigned chromStart;	\/* Start position *\/$/;"	m	struct:hapmapAlleleFreq
chromStart	hg/inc/hapmapAlleles.h	/^    unsigned chromStart;	\/* Start position in chrom (0 based) *\/$/;"	m	struct:hapmapAlleles
chromStart	hg/inc/hapmapAllelesCombined.h	/^    unsigned chromStart;	\/* Start position in chrom (0 based) *\/$/;"	m	struct:hapmapAllelesCombined
chromStart	hg/inc/hapmapAllelesOrtho.h	/^    unsigned chromStart;	\/* Start position in chrom (0 based) *\/$/;"	m	struct:hapmapAllelesOrtho
chromStart	hg/inc/hapmapAllelesSummary.h	/^    unsigned chromStart;	\/* Start position in chrom (0 based) *\/$/;"	m	struct:hapmapAllelesSummary
chromStart	hg/inc/hapmapLd.h	/^    unsigned chromStart;	\/* chromStart for reference marker *\/$/;"	m	struct:hapmapLd
chromStart	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned chromStart;	\/* Start position in chrom (0 based) *\/$/;"	m	struct:hapmapPhaseIIISummary
chromStart	hg/inc/hapmapPrimateAlleles.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:hapmapPrimateAlleles
chromStart	hg/inc/hapmapSnps.h	/^    unsigned chromStart;	\/* Start position in chrom (0 based) *\/$/;"	m	struct:hapmapSnps
chromStart	hg/inc/hapmapSnpsCombined.h	/^    unsigned chromStart;	\/* Start position in chrom (0 based) *\/$/;"	m	struct:hapmapSnpsCombined
chromStart	hg/inc/hgFind.h	/^     int chromStart;		\/* Start position in chromosome. *\/$/;"	m	struct:hgPos
chromStart	hg/inc/hgdpGeo.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:hgdpGeo
chromStart	hg/inc/humanParalog.h	/^    unsigned chromStart;	\/* Start on Human *\/$/;"	m	struct:humanParalog
chromStart	hg/inc/isochores.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:isochores
chromStart	hg/inc/itemAttr.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:itemAttr
chromStart	hg/inc/jaxQTL.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:jaxQTL
chromStart	hg/inc/jaxQTL2.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:jaxQTL2
chromStart	hg/inc/jaxQTL3.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:jaxQTL3
chromStart	hg/inc/jgiGene.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:jgiGene
chromStart	hg/inc/landmark.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:landmark
chromStart	hg/inc/ld.h	/^    unsigned chromStart;	\/* chromStart for reference marker *\/$/;"	m	struct:ld
chromStart	hg/inc/ld2.h	/^    unsigned chromStart;	\/* chromStart for reference marker *\/$/;"	m	struct:ld2
chromStart	hg/inc/lfs.h	/^    unsigned chromStart;	\/* Start position of clone in chromosome *\/$/;"	m	struct:lfs
chromStart	hg/inc/lowelabPfamHit.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:lowelabPfamHits
chromStart	hg/inc/mafFrames.h	/^    unsigned chromStart;	\/* Start range in chromosome *\/$/;"	m	struct:mafFrames
chromStart	hg/inc/mafSummary.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:mafSummary
chromStart	hg/inc/makeItemsItem.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:makeItemsItem
chromStart	hg/inc/mammalPsg.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:mammalPsg
chromStart	hg/inc/mapSts.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:mapSts
chromStart	hg/inc/mcnBreakpoints.h	/^    unsigned chromStart;	\/* Start position in genoSeq *\/$/;"	m	struct:mcnBreakpoints
chromStart	hg/inc/megablastInfo.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:megablastInfo
chromStart	hg/inc/mouseOrtho.h	/^    unsigned chromStart;	\/* Start on Human *\/$/;"	m	struct:mouseOrtho
chromStart	hg/inc/mouseSyn.h	/^    unsigned chromStart;	\/* Start in chromosome *\/$/;"	m	struct:mouseSyn
chromStart	hg/inc/mouseSynWhd.h	/^    unsigned chromStart;	\/* Start position in human chromosome *\/$/;"	m	struct:mouseSynWhd
chromStart	hg/inc/ncRna.h	/^    unsigned chromStart;	\/* genomic start position *\/$/;"	m	struct:ncRna
chromStart	hg/inc/omicia.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:omiciaAuto
chromStart	hg/inc/omicia.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:omiciaHand
chromStart	hg/inc/oreganno.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:oreganno
chromStart	hg/inc/oregannoOther.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:oregannoOther
chromStart	hg/inc/orthoAlleles.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:orthoAlleles
chromStart	hg/inc/pairedTagAlign.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:pairedTagAlign
chromStart	hg/inc/peptideMapping.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:peptideMapping
chromStart	hg/inc/pgPhenoAssoc.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:pgPhenoAssoc
chromStart	hg/inc/pgPolyphenPred.h	/^    unsigned *chromStart;	\/* Start position in chrom *\/$/;"	m	struct:pgPolyphenPred
chromStart	hg/inc/pgSiftPred.h	/^    unsigned *chromStart;	\/* Start position in chrom *\/$/;"	m	struct:pgSiftPred
chromStart	hg/inc/pgSnp.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:pgSnp
chromStart	hg/inc/plasEndPairs.h	/^    unsigned chromStart;	\/* Start position of clone in chromosome *\/$/;"	m	struct:plasEndPairs
chromStart	hg/inc/protVar.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:protVarPos
chromStart	hg/inc/pscreen.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:pscreen
chromStart	hg/inc/pseudoGeneLink.h	/^    unsigned chromStart;	\/* pseudogene alignment start position *\/$/;"	m	struct:pseudoGeneLink
chromStart	hg/inc/putaInfo.h	/^    unsigned chromStart;	\/* stamp's chrom start *\/$/;"	m	struct:putaInfo
chromStart	hg/inc/recombRate.h	/^    unsigned chromStart;	\/* Start position in genoSeq *\/$/;"	m	struct:recombRate
chromStart	hg/inc/recombRateMouse.h	/^    unsigned chromStart;	\/* Start position in genoSeq *\/$/;"	m	struct:recombRateMouse
chromStart	hg/inc/recombRateRat.h	/^    unsigned chromStart;	\/* Start position in genoSeq *\/$/;"	m	struct:recombRateRat
chromStart	hg/inc/retroMrnaInfo.h	/^    unsigned chromStart;	\/* pseudogene alignment start position col2 *\/$/;"	m	struct:retroMrnaInfo
chromStart	hg/inc/rgdQtl.h	/^    unsigned chromStart;	\/* Start in chromosome *\/$/;"	m	struct:rgdQtl
chromStart	hg/inc/rikenCluster.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:rikenUcscCluster
chromStart	hg/inc/rnaGene.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:rnaGene
chromStart	hg/inc/rnaGenes.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:rnaGenes
chromStart	hg/inc/rnaGroup.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:rnaGroup
chromStart	hg/inc/rnaHybridization.h	/^    unsigned chromStart;	\/* Start position in chromosome for pattern region *\/$/;"	m	struct:rnaHybridization
chromStart	hg/inc/rnaPLFold.h	/^    unsigned chromStart;	\/* chromStart for reference marker *\/$/;"	m	struct:rnaPLFold
chromStart	hg/inc/rnaSecStr.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:rnaSecStr
chromStart	hg/inc/roughAli.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:roughAli
chromStart	hg/inc/sample.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:sample
chromStart	hg/inc/scoredRef.h	/^    unsigned chromStart;	\/* Start position in chromosome (forward strand) *\/$/;"	m	struct:scoredRef
chromStart	hg/inc/sgdClone.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:sgdClone
chromStart	hg/inc/sgdOther.h	/^    int chromStart;	\/* Start (zero based) *\/$/;"	m	struct:sgdOther
chromStart	hg/inc/simpleNucDiff.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:simpleNucDiff
chromStart	hg/inc/simpleRepeat.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:simpleRepeat
chromStart	hg/inc/snoRNAs.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:snoRNAs
chromStart	hg/inc/snp.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:snp
chromStart	hg/inc/snp125.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:snp125
chromStart	hg/inc/snp125.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:snp125Extended
chromStart	hg/inc/snp125Exceptions.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:snp125Exceptions
chromStart	hg/inc/snp132Ext.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:snp132Ext
chromStart	hg/inc/snpMap.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:snpMap
chromStart	hg/inc/snpTmp.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:snpTmp
chromStart	hg/inc/softPromoter.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:softPromoter
chromStart	hg/inc/stsMap.h	/^    int chromStart;	\/* Start position in chrom - negative 1 if unpositioned *\/$/;"	m	struct:stsMap
chromStart	hg/inc/stsMapMouse.h	/^    int chromStart;	\/* Start position in chrom - negative 1 if unpositioned *\/$/;"	m	struct:stsMapMouse
chromStart	hg/inc/stsMapMouseNew.h	/^    int chromStart;	\/* Start position in chrom - negative 1 if unpositioned *\/$/;"	m	struct:stsMapMouseNew
chromStart	hg/inc/stsMapRat.h	/^    int chromStart;	\/* Start position in chrom - negative 1 if unpositioned *\/$/;"	m	struct:stsMapRat
chromStart	hg/inc/stsMarker.h	/^    int chromStart;	\/* Start position in chrom - negative 1 if unpositioned *\/$/;"	m	struct:stsMarker
chromStart	hg/inc/switchDbTss.h	/^    unsigned chromStart;	\/* Start in Chromosome *\/$/;"	m	struct:switchDbTss
chromStart	hg/inc/synteny100000.h	/^    unsigned chromStart;	\/* Start on Human *\/$/;"	m	struct:synteny100000
chromStart	hg/inc/syntenyBerk.h	/^    unsigned chromStart;	\/* Start on Human *\/$/;"	m	struct:syntenyBerk
chromStart	hg/inc/syntenySanger.h	/^    unsigned chromStart;	\/* Start on Human *\/$/;"	m	struct:syntenySanger
chromStart	hg/inc/tRNAs.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:tRNAs
chromStart	hg/inc/tagAlign.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:tagAlign
chromStart	hg/inc/tfbsCons.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:tfbsCons
chromStart	hg/inc/tfbsConsSites.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:tfbsConsSites
chromStart	hg/inc/tigrCmrGene.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:tigrCmrGene
chromStart	hg/inc/transMapSrc.h	/^    unsigned chromStart;	\/* chrom start location *\/$/;"	m	struct:transMapSrc
chromStart	hg/inc/transRegCode.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:transRegCode
chromStart	hg/inc/transRegCodeProbe.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:transRegCodeProbe
chromStart	hg/inc/txCluster.h	/^    int chromStart;	\/* Zero based start within chromosome. *\/$/;"	m	struct:txCluster
chromStart	hg/inc/txEdgeBed.h	/^    int chromStart;	\/* Start position, zero-based *\/$/;"	m	struct:txEdgeBed
chromStart	hg/inc/txEdgeOrtho.h	/^    int chromStart;	\/* Start position, zero-based *\/$/;"	m	struct:txEdgeOrtho
chromStart	hg/inc/ucscRetroInfo.h	/^    unsigned chromStart;	\/* pseudogene alignment start position col2 *\/$/;"	m	struct:ucscRetroInfo
chromStart	hg/inc/variant.h	/^    unsigned chromStart;	\/* Start position in chrom *\/$/;"	m	struct:variant
chromStart	hg/inc/variome.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:variome
chromStart	hg/inc/vntr.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:vntr
chromStart	hg/inc/wabAli.h	/^    unsigned chromStart;	\/* Start in chromosome. *\/$/;"	m	struct:wabAli
chromStart	hg/inc/wgRna.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:wgRna
chromStart	hg/inc/wiggle.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:wiggle
chromStart	hg/inc/wiggle.h	/^    unsigned chromStart;    \/* Start position in chromosome, 0 relative *\/$/;"	m	struct:asciiDatum
chromStart	hg/inc/wiggle.h	/^    unsigned chromStart;    \/* Start position in chromosome, 0 relative *\/$/;"	m	struct:wiggleDatum
chromStart	hg/inc/wiggle.h	/^    unsigned chromStart;    \/* Start position, first value *\/$/;"	m	struct:wiggleData
chromStart	hg/inc/wiggle.h	/^    unsigned chromStart;    \/* Start position, first value *\/$/;"	m	struct:wiggleStats
chromStart	hg/inc/wikiTrack.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:wikiTrack
chromStart	hg/inc/zdobnovSynt.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:zdobnovSynt
chromStart	hg/lib/lowelabPfamHit.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:lowelabPfamHits
chromStart	hg/lib/mafGene.c	/^    int chromStart;$/;"	m	struct:exonInfo	file:
chromStart	hg/lib/snoRNAs.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:snoRNAs
chromStart	hg/lib/wigAsciiToBinary.c	/^static unsigned long long chromStart = 0;	\/* for table row data *\/$/;"	v	file:
chromStart	inc/basicBed.h	/^    int chromStart;             \/* Start position (still in rest of line). *\/$/;"	m	struct:bedLine
chromStart	inc/basicBed.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed
chromStart	inc/basicBed.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed3
chromStart	inc/basicBed.h	/^    unsigned chromStart;	\/* Start position in chromosome *\/$/;"	m	struct:bed4
chromStart	inc/cda.h	/^    int chromStart, chromEnd;$/;"	m	struct:cdaAli
chromStart	inc/peakCluster.h	/^    int chromStart, chromEnd;	\/* Half open coordinates. *\/$/;"	m	struct:peakCluster
chromStart	inc/peakCluster.h	/^    int chromStart,chromEnd;	\/* Half open coordinates. *\/$/;"	m	struct:peakItem
chromStart	inc/splatAli.h	/^    int chromStart;	\/* Start position in chromosome (zero based) *\/$/;"	m	struct:splatAli
chromStart	inc/vcf.h	/^    unsigned int chromStart;	\/\/ Start offset in chrom$/;"	m	struct:vcfRecord
chromStartA	hg/inc/synMap.h	/^    unsigned chromStartA;	\/* chromosome start in orgainsm A *\/$/;"	m	struct:synMap
chromStartB	hg/inc/synMap.h	/^    unsigned chromStartB;	\/* chromosome start in orgainsm B *\/$/;"	m	struct:synMap
chromStartFilter	hg/inc/bed.h	/^    enum numericFilterType chromStartFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
chromStartTarget	hg/inc/rnaHybridization.h	/^    unsigned chromStartTarget;	\/* Start position in chromosome for target region *\/$/;"	m	struct:rnaHybridization
chromStartVals	hg/inc/bed.h	/^    int *chromStartVals;$/;"	m	struct:bedFilter
chromStarts	hg/inc/bed12Source.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:bed12Source
chromStarts	hg/inc/bed12wSeq.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:bed12wSeq
chromStarts	hg/inc/bedDetail.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:bedDetail
chromStarts	hg/inc/mammalPsg.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:mammalPsg
chromStarts	hg/inc/pseudoGeneLink.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:pseudoGeneLink
chromStarts	hg/inc/retroMrnaInfo.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:retroMrnaInfo
chromStarts	hg/inc/ucscRetroInfo.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:ucscRetroInfo
chromStarts	hg/inc/zdobnovSynt.h	/^    int *chromStarts;	\/* Start positions relative to chromStart *\/$/;"	m	struct:zdobnovSynt
chromStarts	inc/basicBed.h	/^    int *chromStarts;    \/* Start positions inside chromosome.  Relative to chromStart*\/$/;"	m	struct:bed
chromTable	hg/lib/baseMaskCommon.c	/^static char *chromTable(char *db, char *table, char *chromDb)$/;"	f	file:
chromTableUpdateTime	hg/lib/baseMaskCommon.c	/^static time_t chromTableUpdateTime(char *db, char *table, char *chromDb)$/;"	f	file:
chromTarget	hg/inc/rnaHybridization.h	/^    char *chromTarget;	\/* Reference sequence chromosome for target region *\/$/;"	m	struct:rnaHybridization
chromTbl	hg/inc/chromBins.h	/^    struct hash* chromTbl;        \/* map chrom-> binRange *\/$/;"	m	struct:chromBins	typeref:struct:chromBins::hash
chromToInt	hg/lib/hCommon.c	/^int chromToInt(char *s)$/;"	f
chromTreeOffset	inc/bbiFile.h	/^    bits64 chromTreeOffset;	\/* Offset to chromosome index. *\/$/;"	m	struct:bbiFile
chromVals	hg/inc/bed.h	/^    char **chromVals;$/;"	m	struct:bedFilter
chroms	hg/inc/bacCloneXRef.h	/^    char *chroms;	\/* Chromosome(s) to which BAC is mapped by BLAT *\/$/;"	m	struct:bacCloneXRef
chroms	hg/inc/mrnaMisMatch.h	/^    char **chroms;	\/* chrom of each misMatch *\/$/;"	m	struct:mrnaMisMatch
ci	hg/inc/rnaGenes.h	/^    char ci[2];	\/* Contains intron or not: Y or N *\/$/;"	m	struct:rnaGenes
ci	lib/udc.c	/^    struct connInfo ci; \/* Connection info for open net connection *\/$/;"	m	struct:udcRemoteFileInfo	typeref:struct:udcRemoteFileInfo::connInfo	file:
ci95	hg/inc/gwasCatalog.h	/^    char *ci95;	\/* 95% Confidence Interval *\/$/;"	m	struct:gwasCatalog
ciContext	lib/crTree.c	/^struct ciContext $/;"	s	file:
ciItem	lib/crTree.c	/^struct ciItem$/;"	s	file:
ciItemFetchKey	lib/crTree.c	/^static struct cirTreeRange ciItemFetchKey(const void *va, void *context)$/;"	f	file:
ciItemFetchOffset	lib/crTree.c	/^static bits64 ciItemFetchOffset(const void *va, void *context)$/;"	f	file:
cigar	hg/inc/samAlignment.h	/^    char *cigar;	\/* CIGAR encoded alignment string. *\/$/;"	m	struct:samAlignment
cir	inc/crTree.h	/^    struct cirTreeFile *cir;	\/* Index of ranges. *\/$/;"	m	struct:crTreeFile	typeref:struct:crTreeFile::cirTreeFile
cirOffset	inc/crTree.h	/^    bits64 cirOffset;		\/* Offset of range index. *\/$/;"	m	struct:crTreeFile
cirOffsetPos	lib/crTree.c	42;"	d	file:
cirTreeFile	inc/cirTree.h	/^struct cirTreeFile$/;"	s
cirTreeFileAttach	lib/cirTree.c	/^struct cirTreeFile *cirTreeFileAttach(char *fileName, struct udcFile *udc)$/;"	f
cirTreeFileBulkIndexToOpenFile	lib/cirTree.c	/^void cirTreeFileBulkIndexToOpenFile($/;"	f
cirTreeFileClose	lib/cirTree.c	/^void cirTreeFileClose(struct cirTreeFile **pCrt)$/;"	f
cirTreeFileCreate	lib/cirTree.c	/^void cirTreeFileCreate($/;"	f
cirTreeFileDetach	lib/cirTree.c	/^void cirTreeFileDetach(struct cirTreeFile **pCrt)$/;"	f
cirTreeFileOpen	lib/cirTree.c	/^struct cirTreeFile *cirTreeFileOpen(char *fileName)$/;"	f
cirTreeFindOverlappingBlocks	lib/cirTree.c	/^struct fileOffsetSize *cirTreeFindOverlappingBlocks(struct cirTreeFile *crt, $/;"	f
cirTreeOverlaps	lib/cirTree.c	/^static inline boolean cirTreeOverlaps(int qChrom, int qStart, int qEnd, $/;"	f	file:
cirTreeRange	inc/cirTree.h	/^struct cirTreeRange$/;"	s
cirTreeSig	inc/sig.h	84;"	d
cix	inc/seqOut.h	/^    int cix;$/;"	m	struct:baf
cladeCgiName	hg/lib/web.c	/^static char *cladeCgiName = "clade";$/;"	v	file:
cleanEnvVars	lib/textOut.c	/^static void cleanEnvVars(char *compressType)$/;"	f	file:
cleanupMem	lib/snofmake.c	/^static void cleanupMem()$/;"	f	file:
clear	lib/gifdecomp.c	/^static WORD clear;                         \/* Value for a clear code *\/$/;"	v	file:
clearBlastBlock	lib/blastParse.c	/^static void clearBlastBlock(struct blastBlock *bb, struct dyString *qString, struct dyString *tString)$/;"	f	file:
clearDbContents	hg/lib/cart.c	/^static void clearDbContents(struct sqlConnection *conn, char *table, unsigned id)$/;"	f	file:
clearHits	lib/chainBlock.c	/^static void clearHits(struct dlList *list)$/;"	f	file:
clear_code	lib/gifcomp.c	/^static short clear_code;$/;"	v	file:
clid	hg/inc/stanMad.h	/^    int clid;	\/* The Identification number of the printed cDNA clone. These are mostly IMAGE clones. It is recommended to verify the clone identity by GenBank lookup using the EST accession number (see above) *\/$/;"	m	struct:stanMad
clipMaxX	hg/inc/hvGfx.h	/^    int clipMaxX;$/;"	m	struct:hvGfx
clipMaxX	inc/memgfx.h	/^    int clipMinX, clipMaxX;$/;"	m	struct:memGfx
clipMaxX	inc/pscmGfx.h	/^    int clipMinX, clipMaxX;     \/* Clipping region upper left corner. *\/$/;"	m	struct:pscmGfx
clipMaxY	hg/inc/hvGfx.h	/^    int clipMaxY;$/;"	m	struct:hvGfx
clipMaxY	inc/memgfx.h	/^    int clipMinY, clipMaxY;$/;"	m	struct:memGfx
clipMaxY	inc/pscmGfx.h	/^    int clipMinY, clipMaxY;     \/* lower right, not inclusive *\/$/;"	m	struct:pscmGfx
clipMinX	hg/inc/hvGfx.h	/^    int clipMinX;            \/* X clipping region, before reverse *\/$/;"	m	struct:hvGfx
clipMinX	inc/memgfx.h	/^    int clipMinX, clipMaxX;$/;"	m	struct:memGfx
clipMinX	inc/pscmGfx.h	/^    int clipMinX, clipMaxX;     \/* Clipping region upper left corner. *\/$/;"	m	struct:pscmGfx
clipMinY	hg/inc/hvGfx.h	/^    int clipMinY;$/;"	m	struct:hvGfx
clipMinY	inc/memgfx.h	/^    int clipMinY, clipMaxY;$/;"	m	struct:memGfx
clipMinY	inc/pscmGfx.h	/^    int clipMinY, clipMaxY;     \/* lower right, not inclusive *\/$/;"	m	struct:pscmGfx
clipToWin	hg/lib/featureBits.c	/^boolean clipToWin = TRUE;$/;"	v
clock1	lib/osunix.c	/^long clock1()$/;"	f
clock1	lib/oswin9x.c	/^long clock1()$/;"	f
clock1000	lib/osunix.c	/^long clock1000()$/;"	f
clock1000	lib/oswin9x.c	/^long clock1000()$/;"	f
clone	hg/inc/cgh.h	/^    char *clone;	\/* Name of clone *\/$/;"	m	struct:cgh
clone	hg/inc/chicken13kInfo.h	/^    char *clone;	\/* Source Clone Name *\/$/;"	m	struct:chicken13kInfo
clone	hg/inc/stsInfoMouseNew.h	/^    char *clone;	\/* Clone sequence *\/$/;"	m	struct:stsInfoMouseNew
clone	hg/inc/stsInfoRat.h	/^    char *clone;	\/* Clone sequence *\/$/;"	m	struct:stsInfoRat
clone	hg/inc/tilingPath.h	/^    char *clone;	\/* Clone name in BAC library *\/$/;"	m	struct:tilingPath
cloneBed	lib/basicBed.c	/^struct bed *cloneBed(struct bed *bed)$/;"	f
cloneBedList	lib/basicBed.c	/^struct bed *cloneBedList(struct bed *bedList)$/;"	f
cloneCmdVector	lib/pipeline.c	/^static char** cloneCmdVector(char **cmd)$/;"	f	file:
cloneDnaSeq	lib/dnaseq.c	/^struct dnaSeq *cloneDnaSeq(struct dnaSeq *orig)$/;"	f
cloneFirstWord	lib/common.c	/^char *cloneFirstWord(char *line)$/;"	f
cloneFirstWordByDelimiter	lib/common.c	/^char *cloneFirstWordByDelimiter(char *line,char delimit)$/;"	f
cloneFirstWordByTab	inc/common.h	985;"	d
cloneFirstWordInLine	inc/common.h	984;"	d
cloneLongString	lib/common.c	/^char *cloneLongString(char *s)$/;"	f
cloneMem	lib/common.c	/^void *cloneMem(void *pt, size_t size)$/;"	f
cloneNextWord	inc/common.h	991;"	d
cloneNextWordByDelimiter	lib/common.c	/^char *cloneNextWordByDelimiter(char **line,char delimit)$/;"	f
cloneNextWordByTab	inc/common.h	992;"	d
cloneOrNull	hg/lib/bioImage.c	/^static char *cloneOrNull(char *s)$/;"	f	file:
cloneOrNull	hg/lib/genePix.c	/^static char *cloneOrNull(char *s)$/;"	f	file:
cloneOrNull	hg/lib/visiGene.c	/^static char *cloneOrNull(char *s)$/;"	f	file:
clonePair	hg/inc/ggPrivate.h	/^struct clonePair$/;"	s
clonePos	hg/inc/clonePos.h	/^struct clonePos$/;"	s
clonePosCommaIn	hg/lib/clonePos.c	/^struct clonePos *clonePosCommaIn(char **pS, struct clonePos *ret)$/;"	f
clonePosCommaOut	hg/inc/clonePos.h	62;"	d
clonePosFree	hg/lib/clonePos.c	/^void clonePosFree(struct clonePos **pEl)$/;"	f
clonePosFreeList	hg/lib/clonePos.c	/^void clonePosFreeList(struct clonePos **pList)$/;"	f
clonePosLoad	hg/lib/clonePos.c	/^struct clonePos *clonePosLoad(char **row)$/;"	f
clonePosLoadAll	hg/lib/clonePos.c	/^struct clonePos *clonePosLoadAll(char *fileName) $/;"	f
clonePosLoadAllByChar	hg/lib/clonePos.c	/^struct clonePos *clonePosLoadAllByChar(char *fileName, char chopper) $/;"	f
clonePosLoadAllByTab	hg/inc/clonePos.h	40;"	d
clonePosOutput	hg/lib/clonePos.c	/^void clonePosOutput(struct clonePos *el, FILE *f, char sep, char lastSep) $/;"	f
clonePosStaticLoad	hg/lib/clonePos.c	/^void clonePosStaticLoad(char **row, struct clonePos *ret)$/;"	f
clonePosTabOut	hg/inc/clonePos.h	59;"	d
cloneSegComp	lib/seg.c	/^struct segComp *cloneSegComp(struct segComp *sc)$/;"	f
cloneSpecified	hg/lib/joiner.c	/^static char *cloneSpecified(struct lineFile *lf, char *var, char *val)$/;"	f	file:
cloneString	lib/common.c	/^char *cloneString(const char *s)$/;"	f
cloneStringZ	lib/common.c	/^char *cloneStringZ(const char *s, int size)$/;"	f
cloneStringZExt	lib/common.c	/^static char *cloneStringZExt(const char *s, int size, int copySize)$/;"	f	file:
close	inc/annoFormatter.h	/^    void (*close)(struct annoFormatter **pSelf);$/;"	m	struct:annoFormatter
close	inc/annoStreamer.h	/^    void (*close)(struct annoStreamer **pSelf);$/;"	m	struct:annoStreamer
close	inc/vGfx.h	/^    void (*close)(void **pV);$/;"	m	struct:vGfx
closeCallBack	inc/linefile.h	/^    void(*closeCallBack)(struct lineFile *lf);             \/\/ close callback$/;"	m	struct:lineFile
closeNonStdDescriptors	lib/pipeline.c	/^static void closeNonStdDescriptors(void)$/;"	f	file:
closePipeline	lib/pipeline.c	/^static void closePipeline(struct pipeline *pl)$/;"	f	file:
closePipelineFile	lib/pipeline.c	/^static void closePipelineFile(struct pipeline *pl)$/;"	f	file:
closeWibFile	hg/lib/wigDataStream.c	/^static void closeWibFile(struct wiggleDataStream *wds)$/;"	f	file:
closeWibFile	hg/lib/wiggleUtils.c	/^static void closeWibFile()$/;"	f	file:
closeWigConn	hg/lib/wigDataStream.c	/^static void closeWigConn(struct wiggleDataStream *wds)$/;"	f	file:
clumpHits	jkOwnLib/genoFind.c	/^static struct gfClump *clumpHits(struct genoFind *gf, struct gfHit *hitList, int minMatch)$/;"	f	file:
clumpHits	jkOwnLib/patSpace.c	/^static struct patClump *clumpHits(struct patSpace *ps,$/;"	f	file:
clumpNear	jkOwnLib/genoFind.c	/^static struct gfClump *clumpNear(struct genoFind *gf, struct gfClump *oldClumps, int minMatch)$/;"	f	file:
clumpTargetName	jkOwnLib/gfBlatLib.c	/^char *clumpTargetName(struct gfClump *clump)$/;"	f
clumpToExactRange	jkOwnLib/ffSeedExtend.c	/^static void clumpToExactRange(struct gfClump *clump, bioSeq *qSeq, int tileSize,$/;"	f	file:
clumpToHspRange	jkOwnLib/gfBlatLib.c	/^static void clumpToHspRange(struct gfClump *clump, bioSeq *qSeq, int tileSize,$/;"	f	file:
cluster	jkOwnLib/xenbig.c	/^struct cluster$/;"	s	file:
cluster	lib/boxClump.c	/^    struct cluster *cluster;     \/* Cluster this is part of. *\/$/;"	m	struct:box	typeref:struct:box::cluster	file:
cluster	lib/boxClump.c	/^struct cluster$/;"	s	file:
clusterEncompassedBefore	jkOwnLib/xenbig.c	/^static boolean clusterEncompassedBefore(struct dlList *clusterList, struct cluster *cluster)$/;"	f	file:
clusterId	hg/inc/HInv.h	/^    char *clusterId;	\/* gene cluster ID *\/$/;"	m	struct:HInv
clusterId	hg/inc/rikenBest.h	/^    char *clusterId;	\/* ID of cluster *\/$/;"	m	struct:rikenBest
clusterRemoveEncompassed	jkOwnLib/xenbig.c	/^static void clusterRemoveEncompassed(struct dlList *clusterList)$/;"	f	file:
clustersFromMas	hg/lib/ggCluster.c	/^static struct ggMrnaCluster *clustersFromMas(struct ggMrnaAli *maList, struct dnaSeq *genoSeq)$/;"	f	file:
clustersOverlap	hg/lib/ggCluster.c	/^static boolean clustersOverlap(struct ggMrnaCluster *a, struct ggMrnaCluster *b)$/;"	f	file:
cmbAllocedList	lib/memalloc.c	/^struct dlList *cmbAllocedList;$/;"	v	typeref:struct:dlList
cmbEndCookie	lib/memalloc.c	/^char cmbEndCookie[4] = {0x44, 0x33, 0x7F, 0x42};$/;"	v
cmbStartCookie	lib/memalloc.c	/^int cmbStartCookie = 0x78753421;$/;"	v
cmd	lib/pipeline.c	/^    char **cmd;            \/* null-terminated command for this process *\/$/;"	m	struct:plProc	file:
cmpCcdsMRna	hg/lib/ccdsInfo.c	/^static int cmpCcdsMRna(const void *va, const void *vb)$/;"	f	file:
cmpChromEls	lib/peakCluster.c	/^static int cmpChromEls(const void *va, const void *vb)$/;"	f	file:
cmpCluster	jkOwnLib/xenbig.c	/^static int cmpCluster(const void *va, const void *vb)$/;"	f	file:
cmpContigQueryStart	jkOwnLib/xenbig.c	/^static int cmpContigQueryStart(const void *va, const void *vb)$/;"	f	file:
cmpDnaStrings	lib/dnautil.c	/^int cmpDnaStrings(DNA *a, DNA *b)$/;"	f
cmpExonsTargetFirst	jkOwnLib/crudeali.c	/^static int cmpExonsTargetFirst(const void *va, const void *vb)$/;"	f	file:
cmpF	lib/hacTree.c	/^    hacCmpFunction *cmpF;  \/\/ user-provided itemOrCluster comparison function$/;"	m	struct:sortWrapper	file:
cmpFileInfo	lib/osunix.c	/^int cmpFileInfo(const void *va, const void *vb)$/;"	f
cmpGenesByScore	jkOwnLib/crudeali.c	/^static int cmpGenesByScore(const void *va, const void *vb)$/;"	f	file:
cmpGgMrnaAliTargetStart	hg/lib/ggMrnaAli.c	/^int cmpGgMrnaAliTargetStart(const void *va, const void *vb)$/;"	f
cmpHitsTargetFirst	jkOwnLib/crudeali.c	/^static int cmpHitsTargetFirst(const void *va, const void *vb)$/;"	f	file:
cmpMRna	hg/lib/ccdsInfo.c	/^static int cmpMRna(const void *va, const void *vb)$/;"	f	file:
cmpOffsetPointers	lib/snofmake.c	/^static int cmpOffsetPointers(const void *va, const void *vb)$/;"	f	file:
cmpOnFilePos	lib/fof.c	/^static int cmpOnFilePos(const void *va, const void *vb)$/;"	f	file:
cmpOnKey	lib/fof.c	/^static int cmpOnKey(const void *va, const void *vb)$/;"	f	file:
cmpPriority	lib/diGraph.c	/^static int cmpPriority(const void *va, const void *vb)$/;"	f	file:
cmpProtoNeedle	jkOwnLib/fuzzyFind.c	/^int cmpProtoNeedle(const void *va, const void *vb)$/;"	f
cmpProtoScore	jkOwnLib/fuzzyFind.c	/^int cmpProtoScore(const void *va, const void *vb)$/;"	f
cmpProtoSize	jkOwnLib/fuzzyFind.c	/^int cmpProtoSize(const void *va, const void *vb)$/;"	f
cmpQuerySize	jkOwnLib/genoFind.c	/^static int cmpQuerySize;$/;"	v	file:
cmpRecList	lib/fof.c	/^static int cmpRecList(const void *va, const void *vb)$/;"	f	file:
cmpStringsWithEmbeddedNumbers	lib/common.c	/^int cmpStringsWithEmbeddedNumbers(const char *a, const char *b)$/;"	f
cmpTwoBits32	lib/cirTree.c	/^inline int cmpTwoBits32(bits32 aHi, bits32 aLo, bits32 bHi, bits32 bLo)$/;"	f
cmpWordsWithEmbeddedNumbers	lib/common.c	/^int cmpWordsWithEmbeddedNumbers(const char *a, const char *b)$/;"	f
cnFill	hg/inc/chainNet.h	/^struct cnFill$/;"	s
cnFillCmpTarget	hg/lib/chainNet.c	/^int cnFillCmpTarget(const void *va, const void *vb)$/;"	f
cnFillFree	hg/lib/chainNet.c	/^void cnFillFree(struct cnFill **pFill)$/;"	f
cnFillFreeList	hg/lib/chainNet.c	/^void cnFillFreeList(struct cnFill **pList)$/;"	f
cnFillFromLine	hg/lib/chainNet.c	/^struct cnFill *cnFillFromLine(struct hash *nameHash, $/;"	f
cnFillFromNetAlign	hg/lib/chainNetDbLoad.c	/^struct cnFill *cnFillFromNetAlign(struct netAlign *na, struct hash *nameHash)$/;"	f
cnFillNew	hg/lib/chainNet.c	/^struct cnFill *cnFillNew()$/;"	f
cnFillRead	hg/lib/chainNet.c	/^struct cnFill *cnFillRead(struct chainNet *net, struct lineFile *lf)$/;"	f
cnFillWrite	hg/lib/chainNet.c	/^void cnFillWrite(struct cnFill *fillList, FILE *f, int depth)$/;"	f
cnlHelper	hg/lib/chainNetDbLoad.c	/^struct cnlHelper$/;"	s	file:
cnpIafrate	hg/inc/cnpIafrate.h	/^struct cnpIafrate$/;"	s
cnpIafrate2	hg/inc/cnpIafrate2.h	/^struct cnpIafrate2$/;"	s
cnpIafrate2CommaIn	hg/lib/cnpIafrate2.c	/^struct cnpIafrate2 *cnpIafrate2CommaIn(char **pS, struct cnpIafrate2 *ret)$/;"	f
cnpIafrate2CommaOut	hg/inc/cnpIafrate2.h	64;"	d
cnpIafrate2Free	hg/lib/cnpIafrate2.c	/^void cnpIafrate2Free(struct cnpIafrate2 **pEl)$/;"	f
cnpIafrate2FreeList	hg/lib/cnpIafrate2.c	/^void cnpIafrate2FreeList(struct cnpIafrate2 **pList)$/;"	f
cnpIafrate2Load	hg/lib/cnpIafrate2.c	/^struct cnpIafrate2 *cnpIafrate2Load(char **row)$/;"	f
cnpIafrate2LoadAll	hg/lib/cnpIafrate2.c	/^struct cnpIafrate2 *cnpIafrate2LoadAll(char *fileName) $/;"	f
cnpIafrate2LoadAllByChar	hg/lib/cnpIafrate2.c	/^struct cnpIafrate2 *cnpIafrate2LoadAllByChar(char *fileName, char chopper) $/;"	f
cnpIafrate2LoadAllByTab	hg/inc/cnpIafrate2.h	42;"	d
cnpIafrate2Output	hg/lib/cnpIafrate2.c	/^void cnpIafrate2Output(struct cnpIafrate2 *el, FILE *f, char sep, char lastSep) $/;"	f
cnpIafrate2StaticLoad	hg/lib/cnpIafrate2.c	/^void cnpIafrate2StaticLoad(char **row, struct cnpIafrate2 *ret)$/;"	f
cnpIafrate2TabOut	hg/inc/cnpIafrate2.h	61;"	d
cnpIafrateCommaIn	hg/lib/cnpIafrate.c	/^struct cnpIafrate *cnpIafrateCommaIn(char **pS, struct cnpIafrate *ret)$/;"	f
cnpIafrateCommaOut	hg/inc/cnpIafrate.h	60;"	d
cnpIafrateFree	hg/lib/cnpIafrate.c	/^void cnpIafrateFree(struct cnpIafrate **pEl)$/;"	f
cnpIafrateFreeList	hg/lib/cnpIafrate.c	/^void cnpIafrateFreeList(struct cnpIafrate **pList)$/;"	f
cnpIafrateLoad	hg/lib/cnpIafrate.c	/^struct cnpIafrate *cnpIafrateLoad(char **row)$/;"	f
cnpIafrateLoadAll	hg/lib/cnpIafrate.c	/^struct cnpIafrate *cnpIafrateLoadAll(char *fileName) $/;"	f
cnpIafrateLoadAllByChar	hg/lib/cnpIafrate.c	/^struct cnpIafrate *cnpIafrateLoadAllByChar(char *fileName, char chopper) $/;"	f
cnpIafrateLoadAllByTab	hg/inc/cnpIafrate.h	38;"	d
cnpIafrateOutput	hg/lib/cnpIafrate.c	/^void cnpIafrateOutput(struct cnpIafrate *el, FILE *f, char sep, char lastSep) $/;"	f
cnpIafrateStaticLoad	hg/lib/cnpIafrate.c	/^void cnpIafrateStaticLoad(char **row, struct cnpIafrate *ret)$/;"	f
cnpIafrateTabOut	hg/inc/cnpIafrate.h	57;"	d
cnpLocke	hg/inc/cnpLocke.h	/^struct cnpLocke$/;"	s
cnpLockeCommaIn	hg/lib/cnpLocke.c	/^struct cnpLocke *cnpLockeCommaIn(char **pS, struct cnpLocke *ret)$/;"	f
cnpLockeCommaOut	hg/inc/cnpLocke.h	59;"	d
cnpLockeFree	hg/lib/cnpLocke.c	/^void cnpLockeFree(struct cnpLocke **pEl)$/;"	f
cnpLockeFreeList	hg/lib/cnpLocke.c	/^void cnpLockeFreeList(struct cnpLocke **pList)$/;"	f
cnpLockeLoad	hg/lib/cnpLocke.c	/^struct cnpLocke *cnpLockeLoad(char **row)$/;"	f
cnpLockeLoadAll	hg/lib/cnpLocke.c	/^struct cnpLocke *cnpLockeLoadAll(char *fileName) $/;"	f
cnpLockeLoadAllByChar	hg/lib/cnpLocke.c	/^struct cnpLocke *cnpLockeLoadAllByChar(char *fileName, char chopper) $/;"	f
cnpLockeLoadAllByTab	hg/inc/cnpLocke.h	37;"	d
cnpLockeOutput	hg/lib/cnpLocke.c	/^void cnpLockeOutput(struct cnpLocke *el, FILE *f, char sep, char lastSep) $/;"	f
cnpLockeStaticLoad	hg/lib/cnpLocke.c	/^void cnpLockeStaticLoad(char **row, struct cnpLocke *ret)$/;"	f
cnpLockeTabOut	hg/inc/cnpLocke.h	56;"	d
cnpRedon	hg/inc/cnpRedon.h	/^struct cnpRedon$/;"	s
cnpRedonCommaIn	hg/lib/cnpRedon.c	/^struct cnpRedon *cnpRedonCommaIn(char **pS, struct cnpRedon *ret)$/;"	f
cnpRedonCommaOut	hg/inc/cnpRedon.h	60;"	d
cnpRedonFree	hg/lib/cnpRedon.c	/^void cnpRedonFree(struct cnpRedon **pEl)$/;"	f
cnpRedonFreeList	hg/lib/cnpRedon.c	/^void cnpRedonFreeList(struct cnpRedon **pList)$/;"	f
cnpRedonLoad	hg/lib/cnpRedon.c	/^struct cnpRedon *cnpRedonLoad(char **row)$/;"	f
cnpRedonLoadAll	hg/lib/cnpRedon.c	/^struct cnpRedon *cnpRedonLoadAll(char *fileName) $/;"	f
cnpRedonLoadAllByChar	hg/lib/cnpRedon.c	/^struct cnpRedon *cnpRedonLoadAllByChar(char *fileName, char chopper) $/;"	f
cnpRedonLoadAllByTab	hg/inc/cnpRedon.h	38;"	d
cnpRedonOutput	hg/lib/cnpRedon.c	/^void cnpRedonOutput(struct cnpRedon *el, FILE *f, char sep, char lastSep) $/;"	f
cnpRedonStaticLoad	hg/lib/cnpRedon.c	/^void cnpRedonStaticLoad(char **row, struct cnpRedon *ret)$/;"	f
cnpRedonTabOut	hg/inc/cnpRedon.h	57;"	d
cnpSebat	hg/inc/cnpSebat.h	/^struct cnpSebat$/;"	s
cnpSebat2	hg/inc/cnpSebat2.h	/^struct cnpSebat2$/;"	s
cnpSebat2CommaIn	hg/lib/cnpSebat2.c	/^struct cnpSebat2 *cnpSebat2CommaIn(char **pS, struct cnpSebat2 *ret)$/;"	f
cnpSebat2CommaOut	hg/inc/cnpSebat2.h	59;"	d
cnpSebat2Free	hg/lib/cnpSebat2.c	/^void cnpSebat2Free(struct cnpSebat2 **pEl)$/;"	f
cnpSebat2FreeList	hg/lib/cnpSebat2.c	/^void cnpSebat2FreeList(struct cnpSebat2 **pList)$/;"	f
cnpSebat2Load	hg/lib/cnpSebat2.c	/^struct cnpSebat2 *cnpSebat2Load(char **row)$/;"	f
cnpSebat2LoadAll	hg/lib/cnpSebat2.c	/^struct cnpSebat2 *cnpSebat2LoadAll(char *fileName) $/;"	f
cnpSebat2LoadAllByChar	hg/lib/cnpSebat2.c	/^struct cnpSebat2 *cnpSebat2LoadAllByChar(char *fileName, char chopper) $/;"	f
cnpSebat2LoadAllByTab	hg/inc/cnpSebat2.h	37;"	d
cnpSebat2Output	hg/lib/cnpSebat2.c	/^void cnpSebat2Output(struct cnpSebat2 *el, FILE *f, char sep, char lastSep) $/;"	f
cnpSebat2StaticLoad	hg/lib/cnpSebat2.c	/^void cnpSebat2StaticLoad(char **row, struct cnpSebat2 *ret)$/;"	f
cnpSebat2TabOut	hg/inc/cnpSebat2.h	56;"	d
cnpSebatCommaIn	hg/lib/cnpSebat.c	/^struct cnpSebat *cnpSebatCommaIn(char **pS, struct cnpSebat *ret)$/;"	f
cnpSebatCommaOut	hg/inc/cnpSebat.h	89;"	d
cnpSebatFree	hg/lib/cnpSebat.c	/^void cnpSebatFree(struct cnpSebat **pEl)$/;"	f
cnpSebatFreeList	hg/lib/cnpSebat.c	/^void cnpSebatFreeList(struct cnpSebat **pList)$/;"	f
cnpSebatLoad	hg/lib/cnpSebat.c	/^struct cnpSebat *cnpSebatLoad(char **row)$/;"	f
cnpSebatLoadAll	hg/lib/cnpSebat.c	/^struct cnpSebat *cnpSebatLoadAll(char *fileName) $/;"	f
cnpSebatLoadAllByChar	hg/lib/cnpSebat.c	/^struct cnpSebat *cnpSebatLoadAllByChar(char *fileName, char chopper) $/;"	f
cnpSebatLoadAllByTab	hg/inc/cnpSebat.h	42;"	d
cnpSebatLoadByQuery	hg/lib/cnpSebat.c	/^struct cnpSebat *cnpSebatLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
cnpSebatOutput	hg/lib/cnpSebat.c	/^void cnpSebatOutput(struct cnpSebat *el, FILE *f, char sep, char lastSep) $/;"	f
cnpSebatSaveToDb	hg/lib/cnpSebat.c	/^void cnpSebatSaveToDb(struct sqlConnection *conn, struct cnpSebat *el, char *tableName, int updateSize)$/;"	f
cnpSebatSaveToDbEscaped	hg/lib/cnpSebat.c	/^void cnpSebatSaveToDbEscaped(struct sqlConnection *conn, struct cnpSebat *el, char *tableName, int updateSize)$/;"	f
cnpSebatStaticLoad	hg/lib/cnpSebat.c	/^void cnpSebatStaticLoad(char **row, struct cnpSebat *ret)$/;"	f
cnpSebatTabOut	hg/inc/cnpSebat.h	86;"	d
cnpSharp	hg/inc/cnpSharp.h	/^struct cnpSharp$/;"	s
cnpSharp2	hg/inc/cnpSharp2.h	/^struct cnpSharp2$/;"	s
cnpSharp2CommaIn	hg/lib/cnpSharp2.c	/^struct cnpSharp2 *cnpSharp2CommaIn(char **pS, struct cnpSharp2 *ret)$/;"	f
cnpSharp2CommaOut	hg/inc/cnpSharp2.h	59;"	d
cnpSharp2Free	hg/lib/cnpSharp2.c	/^void cnpSharp2Free(struct cnpSharp2 **pEl)$/;"	f
cnpSharp2FreeList	hg/lib/cnpSharp2.c	/^void cnpSharp2FreeList(struct cnpSharp2 **pList)$/;"	f
cnpSharp2Load	hg/lib/cnpSharp2.c	/^struct cnpSharp2 *cnpSharp2Load(char **row)$/;"	f
cnpSharp2LoadAll	hg/lib/cnpSharp2.c	/^struct cnpSharp2 *cnpSharp2LoadAll(char *fileName) $/;"	f
cnpSharp2LoadAllByChar	hg/lib/cnpSharp2.c	/^struct cnpSharp2 *cnpSharp2LoadAllByChar(char *fileName, char chopper) $/;"	f
cnpSharp2LoadAllByTab	hg/inc/cnpSharp2.h	37;"	d
cnpSharp2Output	hg/lib/cnpSharp2.c	/^void cnpSharp2Output(struct cnpSharp2 *el, FILE *f, char sep, char lastSep) $/;"	f
cnpSharp2StaticLoad	hg/lib/cnpSharp2.c	/^void cnpSharp2StaticLoad(char **row, struct cnpSharp2 *ret)$/;"	f
cnpSharp2TabOut	hg/inc/cnpSharp2.h	56;"	d
cnpSharpCommaIn	hg/lib/cnpSharp.c	/^struct cnpSharp *cnpSharpCommaIn(char **pS, struct cnpSharp *ret)$/;"	f
cnpSharpCommaOut	hg/inc/cnpSharp.h	68;"	d
cnpSharpCutoff	hg/inc/cnpSharpCutoff.h	/^struct cnpSharpCutoff$/;"	s
cnpSharpCutoffCommaIn	hg/lib/cnpSharpCutoff.c	/^struct cnpSharpCutoff *cnpSharpCutoffCommaIn(char **pS, struct cnpSharpCutoff *ret)$/;"	f
cnpSharpCutoffCommaOut	hg/inc/cnpSharpCutoff.h	86;"	d
cnpSharpCutoffFree	hg/lib/cnpSharpCutoff.c	/^void cnpSharpCutoffFree(struct cnpSharpCutoff **pEl)$/;"	f
cnpSharpCutoffFreeList	hg/lib/cnpSharpCutoff.c	/^void cnpSharpCutoffFreeList(struct cnpSharpCutoff **pList)$/;"	f
cnpSharpCutoffLoad	hg/lib/cnpSharpCutoff.c	/^struct cnpSharpCutoff *cnpSharpCutoffLoad(char **row)$/;"	f
cnpSharpCutoffLoadAll	hg/lib/cnpSharpCutoff.c	/^struct cnpSharpCutoff *cnpSharpCutoffLoadAll(char *fileName) $/;"	f
cnpSharpCutoffLoadAllByChar	hg/lib/cnpSharpCutoff.c	/^struct cnpSharpCutoff *cnpSharpCutoffLoadAllByChar(char *fileName, char chopper) $/;"	f
cnpSharpCutoffLoadAllByTab	hg/inc/cnpSharpCutoff.h	39;"	d
cnpSharpCutoffLoadByQuery	hg/lib/cnpSharpCutoff.c	/^struct cnpSharpCutoff *cnpSharpCutoffLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
cnpSharpCutoffOutput	hg/lib/cnpSharpCutoff.c	/^void cnpSharpCutoffOutput(struct cnpSharpCutoff *el, FILE *f, char sep, char lastSep) $/;"	f
cnpSharpCutoffSaveToDb	hg/lib/cnpSharpCutoff.c	/^void cnpSharpCutoffSaveToDb(struct sqlConnection *conn, struct cnpSharpCutoff *el, char *tableName, int updateSize)$/;"	f
cnpSharpCutoffSaveToDbEscaped	hg/lib/cnpSharpCutoff.c	/^void cnpSharpCutoffSaveToDbEscaped(struct sqlConnection *conn, struct cnpSharpCutoff *el, char *tableName, int updateSize)$/;"	f
cnpSharpCutoffStaticLoad	hg/lib/cnpSharpCutoff.c	/^void cnpSharpCutoffStaticLoad(char **row, struct cnpSharpCutoff *ret)$/;"	f
cnpSharpCutoffTabOut	hg/inc/cnpSharpCutoff.h	83;"	d
cnpSharpFree	hg/lib/cnpSharp.c	/^void cnpSharpFree(struct cnpSharp **pEl)$/;"	f
cnpSharpFreeList	hg/lib/cnpSharp.c	/^void cnpSharpFreeList(struct cnpSharp **pList)$/;"	f
cnpSharpLoad	hg/lib/cnpSharp.c	/^struct cnpSharp *cnpSharpLoad(char **row)$/;"	f
cnpSharpLoadAll	hg/lib/cnpSharp.c	/^struct cnpSharp *cnpSharpLoadAll(char *fileName) $/;"	f
cnpSharpLoadAllByChar	hg/lib/cnpSharp.c	/^struct cnpSharp *cnpSharpLoadAllByChar(char *fileName, char chopper) $/;"	f
cnpSharpLoadAllByTab	hg/inc/cnpSharp.h	46;"	d
cnpSharpOutput	hg/lib/cnpSharp.c	/^void cnpSharpOutput(struct cnpSharp *el, FILE *f, char sep, char lastSep) $/;"	f
cnpSharpSample	hg/inc/cnpSharpSample.h	/^struct cnpSharpSample$/;"	s
cnpSharpSampleCommaIn	hg/lib/cnpSharpSample.c	/^struct cnpSharpSample *cnpSharpSampleCommaIn(char **pS, struct cnpSharpSample *ret)$/;"	f
cnpSharpSampleCommaOut	hg/inc/cnpSharpSample.h	88;"	d
cnpSharpSampleFree	hg/lib/cnpSharpSample.c	/^void cnpSharpSampleFree(struct cnpSharpSample **pEl)$/;"	f
cnpSharpSampleFreeList	hg/lib/cnpSharpSample.c	/^void cnpSharpSampleFreeList(struct cnpSharpSample **pList)$/;"	f
cnpSharpSampleLoad	hg/lib/cnpSharpSample.c	/^struct cnpSharpSample *cnpSharpSampleLoad(char **row)$/;"	f
cnpSharpSampleLoadAll	hg/lib/cnpSharpSample.c	/^struct cnpSharpSample *cnpSharpSampleLoadAll(char *fileName) $/;"	f
cnpSharpSampleLoadAllByChar	hg/lib/cnpSharpSample.c	/^struct cnpSharpSample *cnpSharpSampleLoadAllByChar(char *fileName, char chopper) $/;"	f
cnpSharpSampleLoadAllByTab	hg/inc/cnpSharpSample.h	41;"	d
cnpSharpSampleLoadByQuery	hg/lib/cnpSharpSample.c	/^struct cnpSharpSample *cnpSharpSampleLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
cnpSharpSampleOutput	hg/lib/cnpSharpSample.c	/^void cnpSharpSampleOutput(struct cnpSharpSample *el, FILE *f, char sep, char lastSep) $/;"	f
cnpSharpSampleSaveToDb	hg/lib/cnpSharpSample.c	/^void cnpSharpSampleSaveToDb(struct sqlConnection *conn, struct cnpSharpSample *el, char *tableName, int updateSize)$/;"	f
cnpSharpSampleSaveToDbEscaped	hg/lib/cnpSharpSample.c	/^void cnpSharpSampleSaveToDbEscaped(struct sqlConnection *conn, struct cnpSharpSample *el, char *tableName, int updateSize)$/;"	f
cnpSharpSampleStaticLoad	hg/lib/cnpSharpSample.c	/^void cnpSharpSampleStaticLoad(char **row, struct cnpSharpSample *ret)$/;"	f
cnpSharpSampleTabOut	hg/inc/cnpSharpSample.h	85;"	d
cnpSharpStaticLoad	hg/lib/cnpSharp.c	/^void cnpSharpStaticLoad(char **row, struct cnpSharp *ret)$/;"	f
cnpSharpTabOut	hg/inc/cnpSharp.h	65;"	d
cntArgv	hg/lib/sqlProg.c	/^static int cntArgv(char **argv)$/;"	f	file:
cntOverlapCdsBases	hg/lib/geneSimilarities.c	/^static int cntOverlapCdsBases(struct genePred *ga, struct genePred *gb)$/;"	f	file:
cntOverlapExonBases	hg/lib/geneSimilarities.c	/^static int cntOverlapExonBases(struct genePred *ga, struct genePred *gb)$/;"	f	file:
cntStringsInList	lib/common.c	/^int cntStringsInList(char *pStrings)$/;"	f
cnv	hg/inc/gwasCatalog.h	/^    enum gwasCatalogCnv cnv;	\/* Y if Copy Number Variant *\/$/;"	m	struct:gwasCatalog	typeref:enum:gwasCatalog::gwasCatalogCnv
code	hg/inc/arcogdesc.h	/^    char code[2];	\/* COG Code *\/$/;"	m	struct:arcogdesc
code	hg/inc/codeBlast.h	/^    char *code;	\/* BLAST code scores *\/$/;"	m	struct:codeBlast
code	hg/inc/codeBlastScore.h	/^    char code[2];	\/* Code *\/$/;"	m	struct:codeBlastScore
code	hg/inc/cogs.h	/^    char *code;	\/* COG code *\/$/;"	m	struct:COG
code	hg/inc/sargassoSeaXra.h	/^    char code[2];	\/* Code *\/$/;"	m	struct:sargassoSeaXra
code	hg/inc/taxonDivision.h	/^    char code[4];	\/* division code 3 characters  *\/$/;"	m	struct:taxonDivision
codeBlast	hg/inc/codeBlast.h	/^struct codeBlast$/;"	s
codeBlastCommaIn	hg/lib/codeBlast.c	/^struct codeBlast *codeBlastCommaIn(char **pS, struct codeBlast *ret)$/;"	f
codeBlastCommaOut	hg/inc/codeBlast.h	62;"	d
codeBlastFree	hg/lib/codeBlast.c	/^void codeBlastFree(struct codeBlast **pEl)$/;"	f
codeBlastFreeList	hg/lib/codeBlast.c	/^void codeBlastFreeList(struct codeBlast **pList)$/;"	f
codeBlastLoad	hg/lib/codeBlast.c	/^struct codeBlast *codeBlastLoad(char **row)$/;"	f
codeBlastLoadAll	hg/lib/codeBlast.c	/^struct codeBlast *codeBlastLoadAll(char *fileName) $/;"	f
codeBlastLoadAllByChar	hg/lib/codeBlast.c	/^struct codeBlast *codeBlastLoadAllByChar(char *fileName, char chopper) $/;"	f
codeBlastLoadAllByTab	hg/inc/codeBlast.h	40;"	d
codeBlastOutput	hg/lib/codeBlast.c	/^void codeBlastOutput(struct codeBlast *el, FILE *f, char sep, char lastSep) $/;"	f
codeBlastScore	hg/inc/codeBlastScore.h	/^struct codeBlastScore$/;"	s
codeBlastScoreCommaIn	hg/lib/codeBlastScore.c	/^struct codeBlastScore *codeBlastScoreCommaIn(char **pS, struct codeBlastScore *ret)$/;"	f
codeBlastScoreCommaOut	hg/inc/codeBlastScore.h	67;"	d
codeBlastScoreFree	hg/lib/codeBlastScore.c	/^void codeBlastScoreFree(struct codeBlastScore **pEl)$/;"	f
codeBlastScoreFreeList	hg/lib/codeBlastScore.c	/^void codeBlastScoreFreeList(struct codeBlastScore **pList)$/;"	f
codeBlastScoreLoad	hg/lib/codeBlastScore.c	/^struct codeBlastScore *codeBlastScoreLoad(char **row)$/;"	f
codeBlastScoreLoadAll	hg/lib/codeBlastScore.c	/^struct codeBlastScore *codeBlastScoreLoadAll(char *fileName) $/;"	f
codeBlastScoreLoadAllByChar	hg/lib/codeBlastScore.c	/^struct codeBlastScore *codeBlastScoreLoadAllByChar(char *fileName, char chopper) $/;"	f
codeBlastScoreLoadAllByTab	hg/inc/codeBlastScore.h	45;"	d
codeBlastScoreOutput	hg/lib/codeBlastScore.c	/^void codeBlastScoreOutput(struct codeBlastScore *el, FILE *f, char sep, char lastSep) $/;"	f
codeBlastScoreStaticLoad	hg/lib/codeBlastScore.c	/^void codeBlastScoreStaticLoad(char **row, struct codeBlastScore *ret)$/;"	f
codeBlastScoreTabOut	hg/inc/codeBlastScore.h	64;"	d
codeBlastStaticLoad	hg/lib/codeBlast.c	/^void codeBlastStaticLoad(char **row, struct codeBlast *ret)$/;"	f
codeBlastTabOut	hg/inc/codeBlast.h	59;"	d
code_ids	lib/gifcomp.c	/^static short *code_ids;$/;"	v	file:
code_mask	lib/gifdecomp.c	/^static long code_mask[13] = {$/;"	v	file:
code_size	lib/gifcomp.c	/^static short code_size;$/;"	v	file:
codingChange	hg/inc/soterm.h	/^	    } codingChange;$/;"	m	union:soCall::__anon12	typeref:struct:soCall::__anon12::codingChange
codingChange	hg/inc/soterm.h	/^	struct codingChange     \/\/ (non)synonymous variant, deletions in CDS$/;"	s	union:soCall::__anon12
codingFromHiFiCost	jkOwnLib/xensmall.c	/^static int codingFromHiFiCost;$/;"	v	file:
codingFromInsertCost	jkOwnLib/xensmall.c	/^static int codingFromInsertCost;$/;"	v	file:
codingFromLoFiCost	jkOwnLib/xensmall.c	/^static int codingFromLoFiCost;$/;"	v	file:
codingSmallGapCost	jkOwnLib/xensmall.c	/^static int codingSmallGapCost;$/;"	v	file:
coding_sequence_variant	hg/inc/soterm.h	/^    coding_sequence_variant=1580,$/;"	e	enum:__anon11
codon	lib/dnautil.c	/^    DNA *codon;		\/* Lower case. *\/$/;"	m	struct:codonTable	file:
codonBias	inc/codebias.h	/^struct codonBias$/;"	s
codonChangeString	hg/lib/gpFx.c	/^codonChangeString(int codonPos, int numCodons, char *oldCodingSequence, char *newCodingSequence)$/;"	f	file:
codonChanges	hg/inc/soterm.h	/^	    char *codonChanges;$/;"	m	struct:soCall::__anon12::codingChange
codonFindFrame	lib/codebias.c	/^int codonFindFrame(DNA *dna, int dnaSize, struct codonBias *forBias)$/;"	f
codonLoadBias	lib/codebias.c	/^struct codonBias *codonLoadBias(char *fileName)$/;"	f
codonTable	lib/dnautil.c	/^struct codonTable codonTable[] = $/;"	v	typeref:struct:codonTable
codonTable	lib/dnautil.c	/^struct codonTable$/;"	s	file:
codonToPos	hg/lib/genePred.c	/^boolean codonToPos(struct genePred *gp, unsigned num, int *chromStart, int *chromEnd)$/;"	f
codonVal	lib/dnautil.c	/^Codon codonVal(DNA *start)$/;"	f
codons	hg/inc/snp125CodingCoordless.h	/^    char **codons;	\/* Codons corresponding to funcCodes *\/$/;"	m	struct:snp125CodingCoordless
cohortType	hg/inc/cnpIafrate2.h	/^    char *cohortType;	\/* {Control},{Patient},{Control and Patient} *\/$/;"	m	struct:cnpIafrate2
col	hg/inc/stanMad.h	/^    int col;	\/* unknown *\/$/;"	m	struct:stanMad
col	lib/colHash.h	/^    struct rgbColor col;	\/* Color RGB. *\/$/;"	m	struct:colHashEl	typeref:struct:colHashEl::rgbColor
colAlloc	inc/pscmGfx.h	/^    int colAlloc;	  \/* Colors allocated. *\/$/;"	m	struct:pscmGfx
colCount	inc/tabRow.h	/^    int colCount;$/;"	m	struct:tabRow
colHash	lib/colHash.h	/^struct colHash$/;"	s
colHashAdd	lib/colHash.c	/^struct colHashEl *colHashAdd(struct colHash *cHash, $/;"	f
colHashEl	lib/colHash.h	/^struct colHashEl$/;"	s
colHashFree	lib/colHash.c	/^void colHashFree(struct colHash **pEl)$/;"	f
colHashFunc	lib/colHash.h	6;"	d
colHashLookup	lib/colHash.c	/^struct colHashEl *colHashLookup(struct colHash *cHash, $/;"	f
colHashNew	lib/colHash.c	/^struct colHash *colHashNew()$/;"	f
colIx	inc/peakCluster.h	/^    int colIx;		\/* Column index in table. *\/$/;"	m	struct:peakDim
colUsed	inc/pscmGfx.h	/^    int colUsed;	  \/* Colors used. *\/$/;"	m	struct:pscmGfx
colinearPoly	lib/pscmGfx.c	/^boolean colinearPoly(struct gfxPoly *poly)$/;"	f
collapseSamePos	hg/lib/hgFind.c	/^static void collapseSamePos(struct hgPositions *hgp)$/;"	f	file:
collect	inc/annoFormatter.h	/^    void (*collect)(struct annoFormatter *self, struct annoStreamer *source, struct annoRow *rows);$/;"	m	struct:annoFormatter
colonPairToDoubles	hg/lib/hui.c	/^static boolean colonPairToDoubles(char * colonPair,double *first,double *second)$/;"	f	file:
colonPairToInts	hg/lib/hui.c	/^static boolean colonPairToInts(char * colonPair,int *first,int *second)$/;"	f	file:
colonPairToStrings	hg/lib/hui.c	/^static boolean colonPairToStrings(char * colonPair,char **first,char **second)$/;"	f	file:
color	hg/inc/snp125.h	/^    Color color;       \/* color for drawing in hgTracks *\/$/;"	m	struct:snp125Extended
color	hg/inc/variome.h	/^    char *color;	\/* rgb color of item (currently unused) *\/$/;"	m	struct:variome
color	hg/inc/wikiTrack.h	/^    char *color;	\/* rgb color of item (currently unused) *\/$/;"	m	struct:wikiTrack
color	inc/rbTree.h	/^    rbTreeColor color;				\/* Heart of algorithm. *\/$/;"	m	struct:rbTreeNode
color	inc/seqOut.h	/^    int color;          \/* Cache last color here. *\/$/;"	m	struct:cfm
colorB	hg/inc/itemAttr.h	/^    unsigned char colorB;	\/* Color blue component 0-255 *\/$/;"	m	struct:itemAttr
colorB	hg/inc/trackDb.h	/^    unsigned char colorB;	\/* Color blue component 0-255 *\/$/;"	m	struct:trackDb
colorB	hg/inc/trackTable.h	/^    unsigned char colorB;	\/* Color blue component 0-255 *\/$/;"	m	struct:trackTable
colorG	hg/inc/itemAttr.h	/^    unsigned char colorG;	\/* Color green component 0-255 *\/$/;"	m	struct:itemAttr
colorG	hg/inc/trackDb.h	/^    unsigned char colorG;	\/* Color green component 0-255 *\/$/;"	m	struct:trackDb
colorG	hg/inc/trackTable.h	/^    unsigned char colorG;	\/* Color green component 0-255 *\/$/;"	m	struct:trackTable
colorHash	inc/memgfx.h	/^    struct colHash *colorHash;	\/* Hash for fast look up of color. *\/$/;"	m	struct:memGfx	typeref:struct:memGfx::colHash
colorHash	inc/pscmGfx.h	/^    struct colHash *colorHash;	\/* Hash for fast look up of color. *\/$/;"	m	struct:pscmGfx	typeref:struct:pscmGfx::colHash
colorIndex	hg/inc/rnaPLFold.h	/^    char *colorIndex;	\/* PLFold values encoded as indexes in a color array *\/$/;"	m	struct:rnaPLFold
colorIxToRgb	inc/vGfx.h	/^    struct rgbColor (*colorIxToRgb)(void *v, int colorIx);$/;"	m	struct:vGfx	typeref:struct:vGfx::colorIxToRgb
colorMap	inc/memgfx.h	/^    struct rgbColor colorMap[256];$/;"	m	struct:memGfx	typeref:struct:memGfx::rgbColor
colorMap	inc/pscmGfx.h	/^    struct rgbColor colorMap[256]; \/* The color map. *\/$/;"	m	struct:pscmGfx	typeref:struct:pscmGfx::rgbColor
colorR	hg/inc/itemAttr.h	/^    unsigned char colorR;	\/* Color red component 0-255 *\/$/;"	m	struct:itemAttr
colorR	hg/inc/trackDb.h	/^    unsigned char colorR;	\/* Color red component 0-255 *\/$/;"	m	struct:trackDb
colorR	hg/inc/trackTable.h	/^    unsigned char colorR;	\/* Color red component 0-255 *\/$/;"	m	struct:trackTable
colorSchemeVals	hg/lib/hgExp.c	/^static char *colorSchemeVals[] = {$/;"	v	file:
colorVal	hg/lib/hgExp.c	/^static void colorVal(double val, double scale, boolean useBlue, boolean useGrays, boolean logGrays)$/;"	f	file:
coloredExonFactory	hg/lib/customFactory.c	/^static struct customFactory coloredExonFactory =$/;"	v	typeref:struct:customFactory	file:
coloredExonLoader	hg/lib/customFactory.c	/^static struct customTrack *coloredExonLoader(struct customFactory *fac,$/;"	f	file:
coloredExonRecognizer	hg/lib/customFactory.c	/^static boolean coloredExonRecognizer(struct customFactory *fac,$/;"	f	file:
colorsUsed	inc/memgfx.h	/^    int colorsUsed;$/;"	m	struct:memGfx
colorsUsed	inc/pscmGfx.h	/^    int colorsUsed;		\/* Number of colors actually used. *\/$/;"	m	struct:pscmGfx
colpix	lib/gifcodes.h	/^	unsigned char colpix;	\/* flags *\/$/;"	m	struct:gif_header
column	hg/inc/hui.h	/^    char**column;        \/\/ Always order in trackDb.ra (eg: FAC,CEL,view) TAG$/;"	m	struct:_sortOrder
column	hg/inc/hui.h	/^    char*column;              \/\/ field that will be filtered on$/;"	m	struct:_filterBy
column	hg/inc/imageClone.h	/^    unsigned column;	\/* Column *\/$/;"	m	struct:imageClone
columnCount	inc/dnaMotif.h	/^    int columnCount;    \/* Count of columns in motif. *\/ $/;"	m	struct:dnaMotif
columnDef	inc/annoFilter.h	/^    struct asColumn *columnDef;	\/\/ Lots of info about the column: name, type, type-hints, ...$/;"	m	struct:annoFilter	typeref:struct:annoFilter::asColumn
columnInfo	hg/inc/columnInfo.h	/^struct columnInfo$/;"	s
columnInfoCommaIn	hg/lib/columnInfo.c	/^struct columnInfo *columnInfoCommaIn(char **pS, struct columnInfo *ret)$/;"	f
columnInfoCommaOut	hg/inc/columnInfo.h	79;"	d
columnInfoFree	hg/lib/columnInfo.c	/^void columnInfoFree(struct columnInfo **pEl)$/;"	f
columnInfoFreeList	hg/lib/columnInfo.c	/^void columnInfoFreeList(struct columnInfo **pList)$/;"	f
columnInfoLoad	hg/lib/columnInfo.c	/^struct columnInfo *columnInfoLoad(char **row)$/;"	f
columnInfoLoadAll	hg/lib/columnInfo.c	/^struct columnInfo *columnInfoLoadAll(char *fileName) $/;"	f
columnInfoLoadByQuery	hg/lib/columnInfo.c	/^struct columnInfo *columnInfoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
columnInfoOutput	hg/lib/columnInfo.c	/^void columnInfoOutput(struct columnInfo *el, FILE *f, char sep, char lastSep) $/;"	f
columnInfoSaveToDb	hg/lib/columnInfo.c	/^void columnInfoSaveToDb(struct sqlConnection *conn, struct columnInfo *el, char *tableName, int updateSize)$/;"	f
columnInfoSaveToDbEscaped	hg/lib/columnInfo.c	/^void columnInfoSaveToDbEscaped(struct sqlConnection *conn, struct columnInfo *el, char *tableName, int updateSize)$/;"	f
columnInfoStaticLoad	hg/lib/columnInfo.c	/^void columnInfoStaticLoad(char **row, struct columnInfo *ret)$/;"	f
columnInfoTabOut	hg/inc/columnInfo.h	76;"	d
columnIx	hg/inc/hui.h	/^    int columnIx;	\/* Index (0 based) of current column. *\/$/;"	m	struct:controlGrid
columnList	inc/asParse.h	/^    struct asColumn *columnList;  \/* List of columns. *\/$/;"	m	struct:asObject	typeref:struct:asObject::asColumn
columns	hg/inc/hui.h	/^    int columns;	\/* How many columns in grid. *\/$/;"	m	struct:controlGrid
columns	hg/inc/hui.h	/^    sortColumn *columns;        \/\/ a link list of values to sort on$/;"	m	struct:_sortableTdbItem
columns	inc/annoStreamer.h	/^    struct annoColumn *columns;$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::annoColumn
columns	inc/tabRow.h	/^    char *columns[1];$/;"	m	struct:tabRow
combineSettings	hg/inc/microarray.h	/^    struct maGrouping *combineSettings;$/;"	m	struct:microarrayGroups	typeref:struct:microarrayGroups::maGrouping
commaChopper	hg/lib/chromGraphFactory.c	/^static int commaChopper(char *line, char **cols, int maxCol)$/;"	f	file:
commaSepToSlNames	lib/obscure.c	/^struct slName *commaSepToSlNames(char *commaSep)$/;"	f
command	inc/rql.h	/^    char *command;	\/* Generally the first word in the statement. *\/$/;"	m	struct:rqlStatement
comment	hg/inc/chicken13kInfo.h	/^    char *comment;	\/* Comment *\/$/;"	m	struct:chicken13kInfo
comment	hg/inc/tableStatus.h	/^    char *comment;	\/* Seems mostly to be blank *\/$/;"	m	struct:tableStatus
comment	hg/inc/trackVersion.h	/^    char *comment;	\/* other comments about version *\/$/;"	m	struct:trackVersion
comment	inc/asParse.h	/^    char *comment;		   \/* Comment string on column. *\/$/;"	m	struct:asColumn
comment	inc/asParse.h	/^    char *comment;		\/* Comment describing object. *\/$/;"	m	struct:asObject
comments	hg/inc/taxonDivision.h	/^    char *comments;	\/* free-text comments  *\/$/;"	m	struct:taxonDivision
comments	hg/inc/taxonGeneticCode.h	/^    char *comments;	\/* free-text comments  *\/$/;"	m	struct:taxonGeneticCode
comments	hg/inc/taxonNode.h	/^    char *comments;	\/* free-text comments and citations *\/$/;"	m	struct:taxonNode
commonCssStyles	lib/cheapcgi.c	/^char *commonCssStyles()$/;"	f
commonDescriptionWords	hg/lib/hgFind.c	/^static char *commonDescriptionWords[] = {$/;"	v	file:
commonOptions	lib/options.c	/^static struct optionSpec commonOptions[] = {$/;"	v	typeref:struct:optionSpec	file:
commonProductNameWords	hg/lib/hgFind.c	/^static char *commonProductNameWords[] = {$/;"	v	file:
commonTypeForBop	lib/rqlParse.c	/^static enum rqlType commonTypeForBop(enum rqlType left, enum rqlType right)$/;"	f	file:
compText	hg/lib/mafGene.c	/^char *compText[MAX_COMPS]; $/;"	v
companies	hg/inc/cutter.h	/^    char *companies;	\/* Company letters *\/$/;"	m	struct:cutter
company	inc/gfWebLib.h	/^    char *company;	\/* Company name if any. *\/$/;"	m	struct:gfWebConfig
compare	inc/rbTree.h	/^    int (* compare)(void *, void *);\/* Comparison function *\/$/;"	m	struct:rbTree
compareDbs	hg/lib/hdb.c	/^int compareDbs(char *dbA, char *dbB)$/;"	f
compareEndsFilter	hg/inc/bed.h	/^    enum numericFilterType compareEndsFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
compareFunc	inc/quickHeap.h	/^    int (*compareFunc)(const void *elem1, const void *elem2);$/;"	m	struct:quickHeap
compareFunc	lib/dlist.c	/^static int (*compareFunc)(const void *elem1, const void *elem2);$/;"	v	file:
compareIt	lib/rbTree.c	/^static int (*compareIt)(void *, void *);$/;"	v	file:
compareStartsFilter	hg/inc/bed.h	/^    enum numericFilterType compareStartsFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
comparison	hg/inc/dnaProbe.h	/^    float comparison;	\/* weighted average of other scores used for comparison *\/$/;"	m	struct:dnaProbe
complement	hg/inc/genbank.h	/^    boolean complement;           \/* is on reverse strand *\/$/;"	m	struct:genbankCds
complement	lib/dnautil.c	/^void complement(DNA *dna, long length)$/;"	f
component	inc/diGraph.h	/^    int component;      \/* Connected component number after call to dgConnectedComponents. *\/$/;"	m	struct:dgNode
components	inc/maf.h	/^    struct mafComp *components;	\/* List of components of alignment *\/$/;"	m	struct:mafAli	typeref:struct:mafAli::mafComp
components	inc/seg.h	/^	struct segComp *components;	\/* List of segments in this segment list. *\/$/;"	m	struct:segBlock	typeref:struct:segBlock::segComp
compositeGroupId	hg/lib/hui.c	/^char *compositeGroupId(struct trackDb *tdb, char *group, char *label)$/;"	f
compositeGroupLabel	hg/lib/hui.c	/^char *compositeGroupLabel(struct trackDb *tdb, char *group, char *id)$/;"	f
compositeLabelWithVocabLink	hg/lib/hui.c	/^char *compositeLabelWithVocabLink(char *db,struct trackDb *parentTdb, struct trackDb *childTdb,$/;"	f
compositeMetadataToggle	hg/lib/hui.c	/^boolean compositeMetadataToggle(char *db,struct trackDb *tdb,char *title,$/;"	f
compositeUiAllButtons	hg/lib/hui.c	/^static boolean compositeUiAllButtons(char *db, struct cart *cart, struct trackDb *parentTdb, char *formName)$/;"	f	file:
compositeUiByFilter	hg/lib/hui.c	/^static boolean compositeUiByFilter(char *db, struct cart *cart, struct trackDb *parentTdb, char *formName)$/;"	f	file:
compositeUiByMatrix	hg/lib/hui.c	/^static boolean compositeUiByMatrix(char *db, struct cart *cart, struct trackDb *parentTdb, char *formName)$/;"	f	file:
compositeUiNoMatrix	hg/lib/hui.c	/^static boolean compositeUiNoMatrix(char *db, struct cart *cart, struct trackDb *parentTdb,$/;"	f	file:
compositeUiSubtracks	hg/lib/hui.c	/^static void compositeUiSubtracks(char *db, struct cart *cart, struct trackDb *parentTdb)$/;"	f	file:
compositeUiSubtracksMatchingPrimary	hg/lib/hui.c	/^static void compositeUiSubtracksMatchingPrimary(char *db, struct cart *cart, struct trackDb *parentTdb,char *primarySubtrack)$/;"	f	file:
compositeViewCfgExpandedByDefault	hg/lib/hui.c	/^static boolean compositeViewCfgExpandedByDefault(struct trackDb *parentTdb,char *view,$/;"	f	file:
compositeViewControlNameFree	hg/lib/hui.c	/^void compositeViewControlNameFree(char **name)$/;"	f
compositeViewControlNameFromTdb	hg/lib/hui.c	/^char *compositeViewControlNameFromTdb(struct trackDb *tdb)$/;"	f
compress_data	lib/gifcomp.c	/^static short compress_data(int min_code_size)$/;"	f	file:
cond	lib/synQueue.c	/^    pthread_cond_t cond;	\/* Conditional to allow waiting until non-empty. *\/$/;"	m	struct:synQueue	file:
condApprox	hg/inc/dless.h	/^    char condApprox[8];	\/* Whether approximation was used for conditional P-values.  enum('approx', 'exact') *\/$/;"	m	struct:dless
conf	hg/inc/altGraphX.h	/^    double conf;                \/* Confidence. *\/$/;"	m	struct:spliceEdge
conf	hg/inc/rnaSecStr.h	/^    double *conf;	\/* Confidence of secondary-structure annotation per position (0.0-1.0). *\/$/;"	m	struct:rnaSecStr
confScore	hg/inc/switchDbTss.h	/^    double confScore;	\/* Confidence score *\/$/;"	m	struct:switchDbTss
confidence	hg/inc/lowelabTIGROperonScore.h	/^    int confidence;	\/* confidence level of operon *\/$/;"	m	struct:lowelabTIGROperonScore
confidence	hg/inc/vegaInfoZfish.h	/^    char *confidence;	\/* Status (KNOWN, NOVEL, PUTATIVE, PREDICTED) *\/$/;"	m	struct:vegaInfoZfish
configurableByAjax	hg/lib/trackDbCustom.c	/^int configurableByAjax(struct trackDb *tdb, eCfgType cfgTypeIfKnown)$/;"	f
conn	hg/inc/wiggle.h	/^    struct sqlConnection *conn;	\/*	SQL connection when talking to db *\/$/;"	m	struct:wiggleDataStream	typeref:struct:wiggleDataStream::sqlConnection
conn	hg/lib/annoStreamDb.c	/^    struct sqlConnection *conn;		\/\/ Database connection (e.g. hg19 or customTrash)$/;"	m	struct:annoStreamDb	typeref:struct:annoStreamDb::sqlConnection	file:
conn	hg/lib/jksql.c	/^    MYSQL *conn;		    \/* Connection. *\/$/;"	m	struct:sqlConnection	file:
conn	hg/lib/jksql.c	/^    struct sqlConnection *conn;		\/* Pointer to connection. *\/$/;"	m	struct:sqlResult	typeref:struct:sqlResult::sqlConnection	file:
conn	hg/lib/jksql.c	/^    struct sqlConnection *conn;      \/* connection *\/$/;"	m	struct:sqlConnCacheEntry	typeref:struct:sqlConnCacheEntry::sqlConnection	file:
conn	inc/diGraph.h	/^    bool conn;	        \/* Flag for connection algorithms. *\/$/;"	m	struct:dgNode
connGeneSuggestTable	hg/lib/suggest.c	/^char *connGeneSuggestTable(struct sqlConnection *conn)$/;"	f
connId	inc/rudp.h	/^    int connId;              \/* sender conn id - helps filter out duplicate received packets *\/$/;"	m	struct:rudp
connId	inc/rudp.h	/^    int connId;         \/* sender conn id - helps filter out duplicate received packets *\/$/;"	m	struct:rudpHeader
connInfo	lib/udc.c	/^    struct connInfo connInfo;   \/* Connection info for open net connection. *\/$/;"	m	struct:udcFile	typeref:struct:udcFile::connInfo	file:
connInfo	lib/udc.c	/^struct connInfo$/;"	s	file:
connInfoGetSocket	lib/udc.c	/^static int connInfoGetSocket(struct connInfo *ci, char *url, bits64 offset, int size)$/;"	f	file:
connectNpu	lib/net.c	/^int connectNpu(struct netParsedUrl npu, char *url)$/;"	f
connectToAnything	hg/lib/ggGraph.c	/^static boolean connectToAnything(struct geneGraph *gg, int vertIx)$/;"	f	file:
connectedComponents	lib/diGraph.c	/^static int connectedComponents(struct diGraph *dg)$/;"	f	file:
consSpecies	hg/inc/transRegCode.h	/^    unsigned consSpecies;	\/* Number of species conserved in *\/$/;"	m	struct:transRegCode
consWiggle	hg/inc/hgMaf.h	/^struct consWiggle {$/;"	s
consWiggleFind	hg/lib/hgMaf.c	/^struct consWiggle *consWiggleFind(char *db,struct trackDb *parent,char *table)$/;"	f
consensusSize	hg/inc/simpleRepeat.h	/^    unsigned consensusSize;	\/* Length of consensus sequence *\/$/;"	m	struct:simpleRepeat
consensusSoftEndVertex	hg/lib/ggGraph.c	/^int consensusSoftEndVertex(struct geneGraph *gg, int hardStartIx, int softEndIx, $/;"	f
consensusSoftStartVertex	hg/lib/ggGraph.c	/^int consensusSoftStartVertex(struct geneGraph *gg, int softStartIx, int hardEndIx, $/;"	f
conservedSpliceSites	hg/inc/pseudoGeneLink.h	/^    int conservedSpliceSites;	\/* conserved splice site count *\/$/;"	m	struct:pseudoGeneLink
conservedSpliceSites	hg/inc/retroMrnaInfo.h	/^    int conservedSpliceSites;	\/* conserved splice site count col39 *\/$/;"	m	struct:retroMrnaInfo
conservedSpliceSites	hg/inc/ucscRetroInfo.h	/^    int conservedSpliceSites;	\/* conserved splice site count col37 *\/$/;"	m	struct:ucscRetroInfo
containsStringNoCase	lib/common.c	/^char *containsStringNoCase(char *haystack, char *needle)$/;"	f
contents	hg/inc/cartDb.h	/^    char *contents;	\/* Contents - encoded variables *\/$/;"	m	struct:cartDb
context	lib/rbTree.c	/^    void *context;	\/* Some context carried from user and passed to doIt. *\/$/;"	m	struct:rTreeContext	file:
contig	hg/inc/contigAcc.h	/^    char *contig;	\/* Contig name *\/$/;"	m	struct:contigAcc
contig	hg/inc/ctgPos.h	/^    char *contig;	\/* Name of contig *\/$/;"	m	struct:ctgPos
contig	hg/inc/ctgPos2.h	/^    char *contig;	\/* Name of contig *\/$/;"	m	struct:ctgPos2
contig	hg/inc/tilingPath.h	/^    char *contig;	\/* Contig (or gap size) *\/$/;"	m	struct:tilingPath
contig	inc/ens.h	/^    struct contigTree *contig;	        \/* Contig within clone this is in. (Not allocated here).*\/$/;"	m	struct:ensExon	typeref:struct:ensExon::contigTree
contig	inc/hgap.h	/^    struct hgContig *contig;    \/* Associated contig if any. *\/$/;"	m	struct:hgNest	typeref:struct:hgNest::hgContig
contig	jkOwnLib/xenbig.c	/^struct contig$/;"	s	file:
contigAcc	hg/inc/contigAcc.h	/^struct contigAcc$/;"	s
contigAccCommaIn	hg/lib/contigAcc.c	/^struct contigAcc *contigAccCommaIn(char **pS, struct contigAcc *ret)$/;"	f
contigAccCommaOut	hg/inc/contigAcc.h	56;"	d
contigAccFree	hg/lib/contigAcc.c	/^void contigAccFree(struct contigAcc **pEl)$/;"	f
contigAccFreeList	hg/lib/contigAcc.c	/^void contigAccFreeList(struct contigAcc **pList)$/;"	f
contigAccLoad	hg/lib/contigAcc.c	/^struct contigAcc *contigAccLoad(char **row)$/;"	f
contigAccLoadAll	hg/lib/contigAcc.c	/^struct contigAcc *contigAccLoadAll(char *fileName) $/;"	f
contigAccLoadAllByChar	hg/lib/contigAcc.c	/^struct contigAcc *contigAccLoadAllByChar(char *fileName, char chopper) $/;"	f
contigAccLoadAllByTab	hg/inc/contigAcc.h	34;"	d
contigAccOutput	hg/lib/contigAcc.c	/^void contigAccOutput(struct contigAcc *el, FILE *f, char sep, char lastSep) $/;"	f
contigAccStaticLoad	hg/lib/contigAcc.c	/^void contigAccStaticLoad(char **row, struct contigAcc *ret)$/;"	f
contigAccTabOut	hg/inc/contigAcc.h	53;"	d
contigCount	inc/hgap.h	/^    int contigCount;          \/* Number of contigs. *\/$/;"	m	struct:hgBac
contigEncompassedBefore	jkOwnLib/xenbig.c	/^static boolean contigEncompassedBefore(struct dlList *contigList, struct contig *contig)$/;"	f	file:
contigName	hg/inc/snpTmp.h	/^    char *contigName;	\/* contig name *\/$/;"	m	struct:snpTmp
contigName	inc/ace.h	/^    char *contigName;$/;"	m	struct:aceCO
contigPad	inc/unfin.h	/^enum {contigPad = 800,};$/;"	e	enum:__anon10
contigRemoveEncompassed	jkOwnLib/xenbig.c	/^static void contigRemoveEncompassed(struct dlList *contigList)$/;"	f	file:
contigTree	inc/unfin.h	/^struct contigTree$/;"	s
contigs	inc/ace.h	/^    int contigs;$/;"	m	struct:aceAS
contigs	inc/hgap.h	/^    struct hgContig *contigs; \/* Contig list. *\/$/;"	m	struct:hgBac	typeref:struct:hgBac::hgContig
contigs	jkOwnLib/xenbig.c	/^    struct dlList *contigs;$/;"	m	struct:cluster	typeref:struct:cluster::dlList	file:
contigsOverlap	jkOwnLib/xenbig.c	/^static boolean contigsOverlap(struct contig *a, struct contig *b, $/;"	f	file:
controlGrid	hg/inc/hui.h	/^struct controlGrid$/;"	s
controlGridEndCell	hg/lib/hui.c	/^void controlGridEndCell(struct controlGrid *cg)$/;"	f
controlGridEndRow	hg/lib/hui.c	/^void controlGridEndRow(struct controlGrid *cg)$/;"	f
controlGridStartCell	hg/lib/hui.c	/^void controlGridStartCell(struct controlGrid *cg)$/;"	f
controlledVocabLink	hg/lib/hui.c	/^char *controlledVocabLink(char *file,char *term,char *value,char *title, char *label,char *suffix)$/;"	f
convertCoord	hg/lib/genbank.c	/^static boolean convertCoord(char *numStr, int *coord)$/;"	f	file:
convertEpsToPdf	lib/psGfx.c	/^char * convertEpsToPdf(char *epsFile) $/;"	f
convertEscape	lib/gff3.c	/^static char convertEscape(struct gff3Ann *g3a, char *esc, char *src)$/;"	f	file:
cookieDate	hg/lib/cart.c	/^static char *cookieDate()$/;"	f	file:
cookieHash	lib/cheapcgi.c	/^static struct hash *cookieHash = NULL;$/;"	v	typeref:struct:hash	file:
cookieList	lib/cheapcgi.c	/^static struct cgiVar *cookieList = NULL;$/;"	v	typeref:struct:cgiVar	file:
cookieOutput	lib/htmlPage.c	/^static void cookieOutput(struct dyString *dy, struct htmlCookie *cookieList)$/;"	f	file:
cookieParseNameValuePair	lib/htmlPage.c	/^static void cookieParseNameValuePair(char *s, char **retName, char **retVal)$/;"	f	file:
cookies	inc/htmlPage.h	/^    struct htmlCookie *cookies;		\/* Associated cookies if any. *\/$/;"	m	struct:htmlPage	typeref:struct:htmlPage::htmlCookie
coordConv	hg/inc/coordConv.h	/^struct coordConv$/;"	s
coordConvCommaIn	hg/lib/coordConv.c	/^struct coordConv *coordConvCommaIn(char **pS, struct coordConv *ret)$/;"	f
coordConvCommaOut	hg/inc/coordConv.h	97;"	d
coordConvConvert	hg/lib/coordConv.c	/^void coordConvConvert(struct coordConvRep *ccr, char *blatHost, char *port, char *nibDir)$/;"	f
coordConvConvertPos	hg/lib/coordConv.c	/^struct coordConvRep *coordConvConvertPos(char *chr, unsigned chromStart, unsigned chromEnd, char *oldDb, char *newDb,$/;"	f
coordConvFree	hg/lib/coordConv.c	/^void coordConvFree(struct coordConv **pEl)$/;"	f
coordConvFreeList	hg/lib/coordConv.c	/^void coordConvFreeList(struct coordConv **pList)$/;"	f
coordConvLoad	hg/lib/coordConv.c	/^struct coordConv *coordConvLoad(char **row)$/;"	f
coordConvLoadAll	hg/lib/coordConv.c	/^struct coordConv *coordConvLoadAll(char *fileName) $/;"	f
coordConvOutput	hg/lib/coordConv.c	/^void coordConvOutput(struct coordConv *el, FILE *f, char sep, char lastSep) $/;"	f
coordConvRep	hg/inc/coordConv.h	/^struct coordConvRep$/;"	s
coordConvRepFree	hg/lib/coordConv.c	/^void coordConvRepFree(struct coordConvRep **pEl)$/;"	f
coordConvRepFreeList	hg/lib/coordConv.c	/^void coordConvRepFreeList(struct coordConvRep **pList)$/;"	f
coordConvStaticLoad	hg/lib/coordConv.c	/^void coordConvStaticLoad(char **row, struct coordConv *ret)$/;"	f
coordConvTabOut	hg/inc/coordConv.h	94;"	d
coordinateAccuracy	hg/inc/gv.h	/^    unsigned char coordinateAccuracy;	\/* 0=estimated, 1=definite, others? *\/$/;"	m	struct:gv
coordinateAccuracy	hg/inc/protVar.h	/^    unsigned char coordinateAccuracy;	\/* 0=estimated, 1=definite, others? *\/$/;"	m	struct:protVar
copyAli	hg/lib/mafGene.c	/^static int copyAli(struct hash *siHash, struct mafAli *ali, int start)$/;"	f	file:
copyCode	inc/dtdParse.h	/^   char copyCode;		\/* '1', '+', '?', or '*' *\/$/;"	m	struct:dtdElChild
copyExonsIntoGenes	jkOwnLib/crudeali.c	/^static int copyExonsIntoGenes(struct crudeExon *exons, int exonCount, $/;"	f	file:
copyFile	lib/obscure.c	/^void copyFile(char *source, char *dest)$/;"	f
copyFileToTrash	hg/lib/trashDir.c	/^void copyFileToTrash(char **pFileName, char *dirName, char *base, char *suffix)$/;"	f
copyMafs	hg/lib/mafGene.c	/^static void copyMafs(struct hash *siHash, struct exonInfo **giList, $/;"	f	file:
copyNum	hg/inc/simpleRepeat.h	/^    float copyNum;	\/* Mean number of copies of repeat *\/$/;"	m	struct:simpleRepeat
copyOpenFile	lib/obscure.c	/^void copyOpenFile(FILE *inFh, FILE *outFh)$/;"	f
corder	inc/unfin.h	/^    int corder;        \/* Order of contig in genBank submission. *\/$/;"	m	struct:contigTree
coreType	hg/inc/ispyTables.h	/^    char *coreType;	\/* Core Type *\/$/;"	m	struct:labTrack
corr	hg/inc/stanMad.h	/^    float corr;	\/* The correlation of the signal at each pixel of a spot in CH1 to CH2. *\/$/;"	m	struct:stanMad
corrNames	hg/inc/llaInfo.h	/^    char **corrNames;	\/* Names of correlated genes *\/$/;"	m	struct:llaInfo
correctOrder	hg/lib/wiggleCart.c	16;"	d	file:
correlate	inc/correlate.h	/^struct correlate$/;"	s
correlateArrays	lib/correlate.c	/^double correlateArrays(double *x, double *y, int size)$/;"	f
correlateFree	lib/correlate.c	/^void correlateFree(struct correlate **pC)$/;"	f
correlateNew	lib/correlate.c	/^struct correlate *correlateNew()$/;"	f
correlateNext	lib/correlate.c	/^void correlateNext(struct correlate *c, double x, double y)$/;"	f
correlateNextMulti	lib/correlate.c	/^void correlateNextMulti(struct correlate *c, double x, double y, int count)$/;"	f
correlateResult	lib/correlate.c	/^double correlateResult(struct correlate *c)$/;"	f
corrs	hg/inc/llaInfo.h	/^    float *corrs;	\/* Correlations *\/$/;"	m	struct:llaInfo
count	hg/inc/geneBands.h	/^    int count;	\/* Number of times this maps to the genome *\/$/;"	m	struct:geneBands
count	hg/inc/hui.h	/^    int count;$/;"	m	struct:_sortOrder
count	hg/inc/microarray.h	/^    int count;		\/* Count of experiments to median. *\/$/;"	m	struct:maMedSpec
count	hg/inc/wiggle.h	/^    unsigned count;		\/*	number of values in this block *\/$/;"	m	struct:wigAsciiData
count	hg/inc/wiggle.h	/^    unsigned count;	\/* number of values in this block *\/$/;"	m	struct:wiggle
count	hg/inc/wiggle.h	/^    unsigned count;	\/* number of values in this block *\/$/;"	m	struct:wiggleData
count	hg/inc/wiggle.h	/^    unsigned count;	\/* number of values in this block *\/$/;"	m	struct:wiggleStats
count	hg/lib/hui.c	/^    int count;$/;"	m	struct:_dimensions	file:
count	hg/lib/hui.c	/^    int count;$/;"	m	struct:_dividers	file:
count	hg/lib/hui.c	/^    int count;$/;"	m	struct:_hierarchy	file:
count	hg/lib/hui.c	/^    int count;$/;"	m	struct:_members	file:
count	hg/lib/hui.c	/^    int count;$/;"	m	struct:_membership	file:
count	hg/lib/wiggleUtils.c	/^    unsigned count;	\/* number of data values in this statistic *\/$/;"	m	struct:wigStatsAcc	file:
count	inc/histogram.h	/^    unsigned count;		\/*	number of values	*\/$/;"	m	struct:histoResult
count	inc/vcf.h	/^    int count;			\/\/ Number of data values following id$/;"	m	struct:vcfInfoElement
count1	hg/inc/delConrad2.h	/^    unsigned count1;	\/* Count1 *\/$/;"	m	struct:delConrad2
count2	hg/inc/delConrad2.h	/^    unsigned count2;	\/* Count2 *\/$/;"	m	struct:delConrad2
countA	jkOwnLib/ffSeedExtend.c	/^static int countA(char *s, int size)$/;"	f	file:
countAlis	jkOwnLib/fuzzyFind.c	/^static int countAlis(struct ffAli *ali)$/;"	f	file:
countAlis	lib/cda.c	/^static int countAlis(struct ffAli *ali)$/;"	f	file:
countAlpha	hg/lib/hgMaf.c	/^static int countAlpha(char *s)$/;"	f	file:
countBlocksOfLower	lib/twoBit.c	/^static int countBlocksOfLower(char *s, int size)$/;"	f	file:
countBlocksOfN	lib/twoBit.c	/^static int countBlocksOfN(char *s, int size)$/;"	f	file:
countCase	lib/common.c	/^int countCase(char *s,boolean upper)$/;"	f
countChars	lib/common.c	/^int countChars(char *s, char c)$/;"	f
countCharsN	lib/common.c	/^int countCharsN(char *s, char c, int size)$/;"	f
countColumns	hg/lib/chromGraphFactory.c	/^int countColumns(struct slName *list, char *formatType)$/;"	f
countDashes	hg/lib/gpFx.c	/^unsigned countDashes(char *string)$/;"	f
countDown	inc/seqOut.h	/^    bool countDown;     \/* True if want numbers counting down. *\/$/;"	m	struct:cfm
countField	hg/inc/hdb.h	/^    char countField[HDB_MAX_FIELD_STRING];	\/* Name of exon(block)Count field. *\/$/;"	m	struct:hTableInfo
countGapOpens	lib/blastOut.c	/^static int countGapOpens(char *a, char *b, int size)$/;"	f	file:
countGaps	lib/blastOut.c	/^static int countGaps(char *a, char *b, int size)$/;"	f	file:
countGenesBetter	jkOwnLib/crudeali.c	/^static int countGenesBetter(struct crudeGene *genes, int geneCount, int cutoff)$/;"	f	file:
countGoodEnd	lib/ffAli.c	/^static int countGoodEnd(struct ffAli *ali)$/;"	f	file:
countGoodStart	lib/ffAli.c	/^static int countGoodStart(struct ffAli *ali)$/;"	f	file:
countLeadingChars	lib/common.c	/^int countLeadingChars(char *s, char c)$/;"	f
countLeadingDigits	lib/common.c	/^int countLeadingDigits(const char *s)$/;"	f
countLeadingNondigits	lib/common.c	/^int countLeadingNondigits(const char *s)$/;"	f
countMatch	jkOwnLib/gfPcrLib.c	/^static int countMatch(char *a, char *b, int size)$/;"	f	file:
countMatches	lib/blastOut.c	/^static int countMatches(char *a, char *b, int size)$/;"	f	file:
countNonDash	lib/dnautil.c	/^int countNonDash(char *a, int size)$/;"	f
countNonGap	jkOwnLib/xenbig.c	/^static int countNonGap(char *s, int size)$/;"	f	file:
countNonNull	hg/lib/hgExp.c	/^static int countNonNull(char **row, int maxCount)$/;"	f	file:
countOccurrences	lib/htmlPage.c	/^static int countOccurrences(char *needle, int nLen, char *haystack, int hLen)$/;"	f	file:
countPatSpace	jkOwnLib/patSpace.c	/^static void countPatSpace(struct patSpace *ps, struct dnaSeq *seq)$/;"	f	file:
countPathsFromVertice	hg/lib/altGraph.c	/^void countPathsFromVertice(bool **em, unsigned char *vTypes, int vertexCount, int vertice, int *pathCount)$/;"	f
countPositives	lib/blastOut.c	/^static int countPositives(char *a, char *b, int size)$/;"	f	file:
countPrettyGood	jkOwnLib/crudeali.c	/^static int countPrettyGood(struct crudeGene *crudeGenes, int geneCount, int fraction, int minScore)$/;"	f	file:
countSame	lib/common.c	/^int countSame(char *a, char *b)$/;"	f
countSameAsStart	lib/rle.c	/^static int countSameAsStart(signed char *s, int max)$/;"	f	file:
countSeparatedItems	lib/common.c	/^int countSeparatedItems(char *string, char separator)$/;"	f
countT	jkOwnLib/ffSeedExtend.c	/^static int countT(char *s, int size)$/;"	f	file:
countTagsOfType	lib/htmlPage.c	/^static int countTagsOfType(struct htmlTag *tagList, char *type)$/;"	f	file:
countUsed	hg/lib/geneGraph.c	/^static int countUsed(struct geneGraph *gg, int vCount, int *translator)$/;"	f	file:
countWordsInFile	lib/obscure.c	/^int countWordsInFile(char *fileName)$/;"	f
countXPathsFromVertice	hg/lib/altGraphX.c	/^static void countXPathsFromVertice(bool **em, bool *seen, unsigned char *vTypes,$/;"	f	file:
covBuf	inc/bigWig.h	/^     Bits *covBuf;	\/* A bit for each base with data. *\/$/;"	m	struct:bigWigValsOnChrom
coverage	hg/inc/pseudoGeneLink.h	/^    unsigned coverage;	\/* % of bases that align to gene *\/$/;"	m	struct:pseudoGeneLink
coverage	hg/inc/retroMrnaInfo.h	/^    unsigned coverage;	\/* % of bases that align to gene col33 *\/$/;"	m	struct:retroMrnaInfo
coverage	hg/inc/ucscRetroInfo.h	/^    unsigned coverage;	\/* % of bases that align to gene col31 *\/$/;"	m	struct:ucscRetroInfo
cpBox	hg/inc/snoRNAs.h	/^    char *cpBox;	\/* C' box feature *\/$/;"	m	struct:snoRNAs
cpBox	hg/lib/snoRNAs.h	/^    char *cpBox;	\/* C' box feature *\/$/;"	m	struct:snoRNAs
cpFile	lib/obscure.c	/^void cpFile(int s, int d)$/;"	f
cpgIsland	hg/inc/cpgIsland.h	/^struct cpgIsland$/;"	s
cpgIslandCommaIn	hg/lib/cpgIsland.c	/^struct cpgIsland *cpgIslandCommaIn(char **pS, struct cpgIsland *ret)$/;"	f
cpgIslandCommaOut	hg/inc/cpgIsland.h	49;"	d
cpgIslandExt	hg/inc/cpgIslandExt.h	/^struct cpgIslandExt$/;"	s
cpgIslandExtCommaIn	hg/lib/cpgIslandExt.c	/^struct cpgIslandExt *cpgIslandExtCommaIn(char **pS, struct cpgIslandExt *ret)$/;"	f
cpgIslandExtCommaOut	hg/inc/cpgIslandExt.h	64;"	d
cpgIslandExtFree	hg/lib/cpgIslandExt.c	/^void cpgIslandExtFree(struct cpgIslandExt **pEl)$/;"	f
cpgIslandExtFreeList	hg/lib/cpgIslandExt.c	/^void cpgIslandExtFreeList(struct cpgIslandExt **pList)$/;"	f
cpgIslandExtLoad	hg/lib/cpgIslandExt.c	/^struct cpgIslandExt *cpgIslandExtLoad(char **row)$/;"	f
cpgIslandExtLoadAll	hg/lib/cpgIslandExt.c	/^struct cpgIslandExt *cpgIslandExtLoadAll(char *fileName) $/;"	f
cpgIslandExtLoadAllByChar	hg/lib/cpgIslandExt.c	/^struct cpgIslandExt *cpgIslandExtLoadAllByChar(char *fileName, char chopper) $/;"	f
cpgIslandExtLoadAllByTab	hg/inc/cpgIslandExt.h	42;"	d
cpgIslandExtOutput	hg/lib/cpgIslandExt.c	/^void cpgIslandExtOutput(struct cpgIslandExt *el, FILE *f, char sep, char lastSep) $/;"	f
cpgIslandExtStaticLoad	hg/lib/cpgIslandExt.c	/^void cpgIslandExtStaticLoad(char **row, struct cpgIslandExt *ret)$/;"	f
cpgIslandExtTabOut	hg/inc/cpgIslandExt.h	61;"	d
cpgIslandFree	hg/lib/cpgIsland.c	/^void cpgIslandFree(struct cpgIsland **pEl)$/;"	f
cpgIslandFreeList	hg/lib/cpgIsland.c	/^void cpgIslandFreeList(struct cpgIsland **pList)$/;"	f
cpgIslandLoad	hg/lib/cpgIsland.c	/^struct cpgIsland *cpgIslandLoad(char **row)$/;"	f
cpgIslandOutput	hg/lib/cpgIsland.c	/^void cpgIslandOutput(struct cpgIsland *el, FILE *f, char sep, char lastSep) $/;"	f
cpgIslandStaticLoad	hg/lib/cpgIsland.c	/^void cpgIslandStaticLoad(char **row, struct cpgIsland *ret)$/;"	f
cpgIslandTabOut	hg/inc/cpgIsland.h	46;"	d
cpgNum	hg/inc/cpgIsland.h	/^    unsigned cpgNum;	\/* Number of CpGs in island *\/$/;"	m	struct:cpgIsland
cpgNum	hg/inc/cpgIslandExt.h	/^    unsigned cpgNum;	\/* Number of CpGs in island *\/$/;"	m	struct:cpgIslandExt
cppAbort	hg/lib/chromGraphFactory.c	/^void cppAbort(struct customPp *cpp, char *format, ...)$/;"	f
cppNeedDouble	hg/lib/chromGraphFactory.c	/^double cppNeedDouble(struct customPp *cpp, char *words[], int wordIx)$/;"	f
cppNeedNum	hg/lib/chromGraphFactory.c	/^static int cppNeedNum(struct customPp *cpp, char *words[], int wordIx)$/;"	f	file:
cppVaAbort	hg/lib/chromGraphFactory.c	/^void cppVaAbort(struct customPp *cpp, char *format, va_list args)$/;"	f
crHeaderSize	lib/crTree.c	43;"	d	file:
crLfChopper	lib/common.c	/^char crLfChopper[] = "\\n\\r";$/;"	v
crTreeFile	inc/crTree.h	/^struct crTreeFile$/;"	s
crTreeFileClose	lib/crTree.c	/^void crTreeFileClose(struct crTreeFile **pCrt)$/;"	f
crTreeFileCreate	lib/crTree.c	/^void crTreeFileCreate($/;"	f
crTreeFileCreateInputCheck	lib/crTree.c	/^void crTreeFileCreateInputCheck(struct crTreeItem *itemList, struct hash *chromHash, $/;"	f
crTreeFileCreateLow	lib/crTree.c	/^static void crTreeFileCreateLow($/;"	f	file:
crTreeFileOpen	lib/crTree.c	/^struct crTreeFile *crTreeFileOpen(char *fileName)$/;"	f
crTreeFindOverlappingBlocks	lib/crTree.c	/^struct fileOffsetSize *crTreeFindOverlappingBlocks(struct crTreeFile *crt, $/;"	f
crTreeItem	inc/crTree.h	/^struct crTreeItem$/;"	s
crTreeItemCmp	lib/crTree.c	/^int crTreeItemCmp(const void *va, const void *vb)$/;"	f
crTreeItemKey	lib/crTree.c	/^struct crTreeRange crTreeItemKey(const void *va)$/;"	f
crTreeItemOffset	lib/crTree.c	/^bits64 crTreeItemOffset(const void *va)$/;"	f
crTreeRange	lib/crTree.c	/^struct crTreeRange$/;"	s	file:
crTreeSig	inc/sig.h	87;"	d
createAxtGap	hg/lib/axtLib.c	/^struct axt *createAxtGap(char *nibFile, char *chrom, 	$/;"	f
createBedFromEdges	hg/lib/altGraphX.c	/^struct bed *createBedFromEdges( struct altGraphX *ag, int fpEdge, int cassEdge, int tpEdge)$/;"	f
createChromInfoList	hg/lib/chromInfo.c	/^struct chromInfo *createChromInfoList(char *name, char *database)$/;"	f
createCoordConvRep	hg/lib/coordConv.c	/^struct coordConvRep *createCoordConvRep()$/;"	f
createDate	hg/inc/ccdsNotes.h	/^    char createDate[11];	\/* date note was added *\/$/;"	m	struct:ccdsNotes
createFakeExon	hg/lib/altGraphX.c	/^struct spliceEdge *createFakeExon(int vertex, int position, int confidence)$/;"	f
createMappedPsl	lib/pslTransMap.c	/^static struct psl* createMappedPsl(struct psl* inPsl, struct psl *mapPsl,$/;"	f	file:
createMetaInfo	hg/lib/customTrack.c	/^static void createMetaInfo(struct sqlConnection *conn)$/;"	f	file:
createOptions	hg/inc/tableStatus.h	/^    char *createOptions;	\/* Seems to be mostly blank *\/$/;"	m	struct:tableStatus
createSql	hg/lib/ccdsGeneMap.c	/^static char *createSql =$/;"	v	file:
createSql	hg/lib/ccdsInfo.c	/^static char *createSql =$/;"	v	file:
createSql	hg/lib/ccdsNotes.c	/^static char *createSql =$/;"	v	file:
createSql	hg/lib/genePred.c	/^static char *createSql = $/;"	v	file:
createSql	hg/lib/mafFrames.c	/^static char *createSql = $/;"	v	file:
createString	hg/lib/estOrientInfo.c	/^static char *createString = $/;"	v	file:
createString	hg/lib/wikiTrack.c	/^static char *createString =$/;"	v	file:
createString	lib/psl.c	/^static char *createString = $/;"	v	file:
createTime	hg/inc/mysqlTableStatus.h	/^    char *createTime;	\/* Table creation time *\/$/;"	m	struct:mysqlTableStatus
createTime	hg/inc/tableStatus.h	/^    char *createTime;	\/* YYYY-MM-DD HH:MM:SS format creation time *\/$/;"	m	struct:tableStatus
creationDate	hg/inc/variome.h	/^    char *creationDate;	\/* date item created *\/$/;"	m	struct:variome
creationDate	hg/inc/wikiTrack.h	/^    char *creationDate;	\/* date item created *\/$/;"	m	struct:wikiTrack
credit	hg/inc/expRecord.h	/^    char *credit;	\/* who to credit with experiment *\/$/;"	m	struct:expRecord
crossSpeciesCfgUi	hg/lib/hui.c	/^void crossSpeciesCfgUi(struct cart *cart, struct trackDb *tdb)$/;"	f
crossover	jkOwnLib/supStitch.c	/^    int crossover;               \/* Offset from overlap where crossover occurs. *\/$/;"	m	struct:ssEdge	file:
crt1	hg/inc/stanMad.h	/^    float crt1;	\/* and CRT2 Unused. *\/$/;"	m	struct:stanMad
crt2	hg/inc/stanMad.h	/^    float crt2;	\/* unused *\/$/;"	m	struct:stanMad
crudeAli	inc/crudeali.h	/^struct crudeAli$/;"	s
crudeAliFind	jkOwnLib/crudeali.c	/^struct crudeAli *crudeAliFind(DNA *probe, int probeSize, $/;"	f
crudeExon	jkOwnLib/crudeali.c	/^struct crudeExon$/;"	s	file:
crudeGene	jkOwnLib/crudeali.c	/^struct crudeGene$/;"	s	file:
crudeHit	jkOwnLib/crudeali.c	/^struct crudeHit$/;"	s	file:
csAllocdHere	inc/annoGratorQuery.h	/^    boolean csAllocdHere;		\/\/ internal use only.$/;"	m	struct:annoGratorQuery
ctAddToSettings	hg/lib/customTrack.c	/^void ctAddToSettings(struct customTrack *ct, char *name, char *val)$/;"	f
ctBrowserLines	hg/lib/customFactory.c	/^struct slName *ctBrowserLines(struct customTrack *ct)$/;"	f
ctConfigUpdate	hg/lib/customTrack.c	/^boolean ctConfigUpdate(char *ctFile)$/;"	f
ctDataUrl	hg/lib/customFactory.c	/^char *ctDataUrl(struct customTrack *ct)$/;"	f
ctDbTableExists	hg/lib/customTrack.c	/^boolean ctDbTableExists(struct sqlConnection *conn, char *table)$/;"	f
ctDbUseAll	hg/lib/customTrack.c	/^boolean ctDbUseAll()$/;"	f
ctFind	hg/lib/customTrack.c	/^struct customTrack *ctFind(struct customTrack *ctList,char *name)$/;"	f
ctFirstItemPos	hg/lib/customFactory.c	/^char *ctFirstItemPos(struct customTrack *ct)$/;"	f
ctGenome	hg/lib/customFactory.c	/^char *ctGenome(struct customTrack *ct)$/;"	f
ctGenomeOrCurrent	hg/lib/customFactory.c	/^static char *ctGenomeOrCurrent(struct customTrack *ct)$/;"	f	file:
ctHtmlUrl	hg/lib/customFactory.c	/^char *ctHtmlUrl(struct customTrack *ct)$/;"	f
ctInitialPosition	hg/lib/customFactory.c	/^char *ctInitialPosition(struct customTrack *ct)$/;"	f
ctInputType	hg/lib/customFactory.c	/^char *ctInputType(struct customTrack *ct)$/;"	f
ctItemCount	hg/lib/customFactory.c	/^int ctItemCount(struct customTrack *ct)$/;"	f
ctLoadMultScoresBedDb	hg/lib/microarray.c	/^struct bed *ctLoadMultScoresBedDb(struct customTrack *ct, char *chrom, int start, int end)$/;"	f
ctOrigTrackLine	hg/lib/customFactory.c	/^char *ctOrigTrackLine(struct customTrack *ct)$/;"	f
ctRemoveFromSettings	hg/lib/customTrack.c	/^void ctRemoveFromSettings(struct customTrack *ct, char *name)$/;"	f
ctTouchLastUse	hg/lib/customTrack.c	/^void ctTouchLastUse(struct sqlConnection *conn, char *table,$/;"	f
ct_nextDefaultTrackNum	hg/lib/customTrack.c	/^static int ct_nextDefaultTrackNum = 1;$/;"	v	file:
ctgAcc	hg/inc/mapSts.h	/^    char *ctgAcc;	\/* Contig accession number *\/$/;"	m	struct:mapSts
ctgAcc	hg/inc/stsMap.h	/^    char *ctgAcc;	\/* Contig accession number *\/$/;"	m	struct:stsMap
ctgAcc	hg/inc/stsMapMouseNew.h	/^    char *ctgAcc;	\/* Contig accession number *\/$/;"	m	struct:stsMapMouseNew
ctgAcc	hg/inc/stsMapRat.h	/^    char *ctgAcc;	\/* Contig accession number *\/$/;"	m	struct:stsMapRat
ctgAcc	hg/inc/stsMarker.h	/^    char *ctgAcc;	\/* Contig accession number *\/$/;"	m	struct:stsMarker
ctgAfter	hg/inc/chromInserts.h	/^    char *ctgAfter;             \/* Contig after insert (or NULL) *\/$/;"	m	struct:bigInsert
ctgBefore	hg/inc/chromInserts.h	/^    char *ctgBefore;            \/* Contig before insert (or NULL) *\/$/;"	m	struct:bigInsert
ctgPos	hg/inc/ctgPos.h	/^struct ctgPos$/;"	s
ctgPos2	hg/inc/ctgPos2.h	/^struct ctgPos2$/;"	s
ctgPos2CommaIn	hg/lib/ctgPos2.c	/^struct ctgPos2 *ctgPos2CommaIn(char **pS, struct ctgPos2 *ret)$/;"	f
ctgPos2CommaOut	hg/inc/ctgPos2.h	60;"	d
ctgPos2Free	hg/lib/ctgPos2.c	/^void ctgPos2Free(struct ctgPos2 **pEl)$/;"	f
ctgPos2FreeList	hg/lib/ctgPos2.c	/^void ctgPos2FreeList(struct ctgPos2 **pList)$/;"	f
ctgPos2Load	hg/lib/ctgPos2.c	/^struct ctgPos2 *ctgPos2Load(char **row)$/;"	f
ctgPos2LoadAll	hg/lib/ctgPos2.c	/^struct ctgPos2 *ctgPos2LoadAll(char *fileName) $/;"	f
ctgPos2LoadAllByChar	hg/lib/ctgPos2.c	/^struct ctgPos2 *ctgPos2LoadAllByChar(char *fileName, char chopper) $/;"	f
ctgPos2LoadAllByTab	hg/inc/ctgPos2.h	38;"	d
ctgPos2Output	hg/lib/ctgPos2.c	/^void ctgPos2Output(struct ctgPos2 *el, FILE *f, char sep, char lastSep) $/;"	f
ctgPos2StaticLoad	hg/lib/ctgPos2.c	/^void ctgPos2StaticLoad(char **row, struct ctgPos2 *ret)$/;"	f
ctgPos2TabOut	hg/inc/ctgPos2.h	57;"	d
ctgPosCommaIn	hg/lib/ctgPos.c	/^struct ctgPos *ctgPosCommaIn(char **pS, struct ctgPos *ret)$/;"	f
ctgPosCommaOut	hg/inc/ctgPos.h	45;"	d
ctgPosFree	hg/lib/ctgPos.c	/^void ctgPosFree(struct ctgPos **pEl)$/;"	f
ctgPosFreeList	hg/lib/ctgPos.c	/^void ctgPosFreeList(struct ctgPos **pList)$/;"	f
ctgPosLoad	hg/lib/ctgPos.c	/^struct ctgPos *ctgPosLoad(char **row)$/;"	f
ctgPosOutput	hg/lib/ctgPos.c	/^void ctgPosOutput(struct ctgPos *el, FILE *f, char sep, char lastSep) $/;"	f
ctgPosStaticLoad	hg/lib/ctgPos.c	/^void ctgPosStaticLoad(char **row, struct ctgPos *ret)$/;"	f
ctgPosTabOut	hg/inc/ctgPos.h	42;"	d
ctrlSocket	lib/udc.c	/^    int ctrlSocket;             \/* (FTP only) Control socket descriptor or 0. *\/$/;"	m	struct:connInfo	file:
cullCutters	hg/lib/cutter.c	/^void cullCutters(struct cutter **enzList, boolean semicolon, struct slName *justThese, int matchSize)$/;"	f
cumScore	jkOwnLib/supStitch.c	/^    int cumScore;               \/* Dynamic programming score of edge. *\/$/;"	m	struct:ssNode	file:
curColor	inc/pscmGfx.h	/^    int curColor;	  \/* Current color. *\/$/;"	m	struct:pscmGfx
curEnd	lib/dnaLoad.c	/^    int curEnd;			\/* End offset  within current parent sequence. *\/$/;"	m	struct:dnaLoad	file:
curFont	inc/pscmGfx.h	/^    void *curFont;	  \/* Current font. *\/$/;"	m	struct:pscmGfx
curLine	inc/tokenizer.h	/^    char *curLine;       \/* Current line of text. *\/$/;"	m	struct:tokenizer
curPosString	hg/lib/mafGene.c	/^    struct slName *curPosString;$/;"	m	struct:speciesInfo	typeref:struct:speciesInfo::slName	file:
curSize	lib/dnaLoad.c	/^    int curSize;		\/* Size of current parent sequence. *\/$/;"	m	struct:dnaLoad	file:
curStart	lib/dnaLoad.c	/^    int curStart;		\/* Start offset within current parent sequence. *\/$/;"	m	struct:dnaLoad	file:
curVal	inc/htmlPage.h	/^    char *curVal;		\/* Current value if any.  Allocated here. *\/$/;"	m	struct:htmlFormVar
curVars	hg/lib/pal.c	/^static char *curVars[] = {$/;"	v	file:
curr_size	lib/gifdecomp.c	/^static WORD curr_size;                     \/* The current code size *\/$/;"	v	file:
currentChrom	hg/inc/wiggle.h	/^    char *currentChrom;		\/*	for use during reading	*\/$/;"	m	struct:wiggleDataStream
currentFile	hg/lib/wiggleUtils.c	/^static char *currentFile = (char *) NULL;	\/* the binary file name *\/$/;"	v	file:
currentSpan	hg/inc/wiggle.h	/^    unsigned int currentSpan;	\/*	for use during reading	*\/$/;"	m	struct:wiggleDataStream
currentlyVisible	hg/lib/hui.c	/^    int *currentlyVisible;           \/\/ count of visible subtracks$/;"	m	struct:_members	file:
cursors13	inc/itsa.h	/^    UBYTE *cursors13;	\/* Cursor positions in suffix array at index positions. *\/$/;"	m	struct:itsa
customDocParse	hg/lib/customFactory.c	/^char *customDocParse(char *text)$/;"	f
customDocPpNew	hg/lib/customPp.c	/^struct customPp *customDocPpNew(struct lineFile *lf)$/;"	f
customFactory	hg/inc/customFactory.h	/^struct customFactory$/;"	s
customFactoryAdd	hg/lib/customFactory.c	/^void customFactoryAdd(struct customFactory *fac)$/;"	f
customFactoryCheckChromNameDb	hg/lib/customFactory.c	/^void customFactoryCheckChromNameDb(char *genomeDb, char *word, struct lineFile *lf)$/;"	f
customFactoryEnableExtraChecking	hg/lib/customFactory.c	/^void customFactoryEnableExtraChecking(boolean enable)$/;"	f
customFactoryFind	hg/lib/customFactory.c	/^struct customFactory *customFactoryFind(char *genomeDb, struct customPp *cpp,$/;"	f
customFactoryInit	hg/lib/customFactory.c	/^static void customFactoryInit()$/;"	f	file:
customFactoryNextRealTilTrack	hg/lib/customFactory.c	/^char *customFactoryNextRealTilTrack(struct customPp *cpp)$/;"	f
customFactoryNextTilTrack	hg/lib/customFactory.c	/^char *customFactoryNextTilTrack(struct customPp *cpp)$/;"	f
customFactoryParse	hg/lib/customFactory.c	/^struct customTrack *customFactoryParse(char *genomeDb, char *text, boolean isFile,$/;"	f
customFactoryParseAnyDb	hg/lib/customFactory.c	/^struct customTrack *customFactoryParseAnyDb(char *genomeDb, char *text, boolean isFile,$/;"	f
customFactoryParseOptionalDb	hg/lib/customFactory.c	/^static struct customTrack *customFactoryParseOptionalDb(char *genomeDb, char *text,$/;"	f	file:
customFactorySetupDbTrack	hg/lib/customFactory.c	/^void customFactorySetupDbTrack(struct customTrack *track)$/;"	f
customFactoryTestExistence	hg/lib/customFactory.c	/^void customFactoryTestExistence(char *genomeDb, char *fileName, boolean *retGotLive,$/;"	f
customLineFile	hg/lib/customFactory.c	/^static struct lineFile *customLineFile(char *text, boolean isFile)$/;"	f	file:
customPp	hg/inc/customPp.h	/^struct customPp$/;"	s
customPpFree	hg/lib/customPp.c	/^void customPpFree(struct customPp **pCpp)$/;"	f
customPpNew	hg/lib/customPp.c	/^struct customPp *customPpNew(struct lineFile *lf)$/;"	f
customPpNext	hg/lib/customPp.c	/^char *customPpNext(struct customPp *cpp)$/;"	f
customPpNextReal	hg/lib/customPp.c	/^char *customPpNextReal(struct customPp *cpp)$/;"	f
customPpReuse	hg/lib/customPp.c	/^void customPpReuse(struct customPp *cpp, char *line)$/;"	f
customPpTakeBrowserLines	hg/lib/customPp.c	/^struct slName *customPpTakeBrowserLines(struct customPp *cpp)$/;"	f
customTrack	hg/inc/customTrack.h	/^struct customTrack$/;"	s
customTrackAddToList	hg/lib/customTrack.c	/^struct customTrack *customTrackAddToList(struct customTrack *ctList,$/;"	f
customTrackBed	hg/lib/customFactory.c	/^static struct bed *customTrackBed(char *row[64], int wordCount, int chromSize, struct lineFile *lf)$/;"	f	file:
customTrackBedDetail	hg/lib/customFactory.c	/^static struct bedDetail *customTrackBedDetail(char *db, char **row,$/;"	f	file:
customTrackBedOld	hg/lib/customFactory.c	/^static struct bed *customTrackBedOld(char *db, char *row[13], int wordCount,$/;"	f	file:
customTrackDump	hg/lib/customTrack.c	/^void  customTrackDump(struct customTrack *track)$/;"	f
customTrackEncodePeak	hg/lib/customFactory.c	/^static struct encodePeak *customTrackEncodePeak(char *db, char **row, enum encodePeakType pt,$/;"	f	file:
customTrackFileVar	hg/lib/customTrack.c	/^char *customTrackFileVar(char *database)$/;"	f
customTrackHandleLift	hg/lib/customTrack.c	/^void customTrackHandleLift(char *db, struct customTrack *ctList)$/;"	f
customTrackIsCompressed	hg/lib/customTrack.c	/^boolean customTrackIsCompressed(char *fileName)$/;"	f
customTrackLift	hg/lib/customTrack.c	/^void customTrackLift(struct customTrack *trackList,$/;"	f
customTrackNeedsLift	hg/lib/customTrack.c	/^boolean customTrackNeedsLift(struct customTrack *trackList)$/;"	f
customTrackPgSnp	hg/lib/customFactory.c	/^static struct pgSnp *customTrackPgSnp(char *db, char **row,$/;"	f	file:
customTrackPsl	hg/lib/customFactory.c	/^static struct bed *customTrackPsl(char *db, boolean isProt, char **row,$/;"	f	file:
customTrackRemoveUnavailableFromList	hg/lib/customTrack.c	/^struct customTrack *customTrackRemoveUnavailableFromList(struct customTrack *ctList)$/;"	f
customTrackTableFromLabel	hg/lib/customTrack.c	/^char *customTrackTableFromLabel(char *label)$/;"	f
customTrackTdbDefault	hg/lib/customTrack.c	/^struct trackDb *customTrackTdbDefault()$/;"	f
customTrackUnavailableErrsFromList	hg/lib/customTrack.c	/^char *customTrackUnavailableErrsFromList(struct customTrack *ctList)$/;"	f
customTrackUpdateFromConfig	hg/lib/customFactory.c	/^void customTrackUpdateFromConfig(struct customTrack *ct, char *genomeDb,$/;"	f
customTrackUpdateFromSettings	hg/lib/customFactory.c	/^static void customTrackUpdateFromSettings(struct customTrack *track,$/;"	f	file:
customTrackUserConfig	hg/lib/customFactory.c	/^char *customTrackUserConfig(struct customTrack *ct)$/;"	f
customTracksExist	hg/lib/customTrack.c	/^boolean customTracksExist(struct cart *cart, char **retCtFileName)$/;"	f
customTracksParseCart	hg/lib/customTrack.c	/^struct customTrack *customTracksParseCart(char *genomeDb, struct cart *cart,$/;"	f
customTracksParseCartDetailed	hg/lib/customTrack.c	/^struct customTrack *customTracksParseCartDetailed(char *genomeDb, struct cart *cart,$/;"	f
customTracksSaveCart	hg/lib/customTrack.c	/^void customTracksSaveCart(char *genomeDb, struct cart *cart, struct customTrack *ctList)$/;"	f
customTracksSaveFile	hg/lib/customTrack.c	/^void customTracksSaveFile(char *genomeDb, struct customTrack *trackList, char *fileName)$/;"	f
cut	hg/inc/cutter.h	/^    unsigned cut;	\/* Cut site on the plus strand *\/$/;"	m	struct:cutter
cutAtBigIntrons	jkOwnLib/supStitch.c	/^struct ffAli *cutAtBigIntrons(struct ffAli *ffList, int maxIntron, $/;"	f
cutCoord	lib/chainBlock.c	/^    int cutCoord;	      \/* Coordinate (in some dimension) to cut on *\/$/;"	m	struct:kdBranch	file:
cutter	hg/inc/cutter.h	/^struct cutter$/;"	s
cutterCommaIn	hg/lib/cutter.c	/^struct cutter *cutterCommaIn(char **pS, struct cutter *ret)$/;"	f
cutterCommaOut	hg/inc/cutter.h	93;"	d
cutterDefault	hg/inc/hui.h	77;"	d
cutterFree	hg/lib/cutter.c	/^void cutterFree(struct cutter **pEl)$/;"	f
cutterFreeList	hg/lib/cutter.c	/^void cutterFreeList(struct cutter **pList)$/;"	f
cutterLoad	hg/lib/cutter.c	/^struct cutter *cutterLoad(char **row)$/;"	f
cutterLoadAll	hg/lib/cutter.c	/^struct cutter *cutterLoadAll(char *fileName) $/;"	f
cutterLoadAllByChar	hg/lib/cutter.c	/^struct cutter *cutterLoadAllByChar(char *fileName, char chopper) $/;"	f
cutterLoadAllByTab	hg/inc/cutter.h	46;"	d
cutterLoadByQuery	hg/lib/cutter.c	/^struct cutter *cutterLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
cutterOutput	hg/lib/cutter.c	/^void cutterOutput(struct cutter *el, FILE *f, char sep, char lastSep) $/;"	f
cutterSaveToDb	hg/lib/cutter.c	/^void cutterSaveToDb(struct sqlConnection *conn, struct cutter *el, char *tableName, int updateSize)$/;"	f
cutterSaveToDbEscaped	hg/lib/cutter.c	/^void cutterSaveToDbEscaped(struct sqlConnection *conn, struct cutter *el, char *tableName, int updateSize)$/;"	f
cutterTabOut	hg/inc/cutter.h	90;"	d
cutterVar	hg/inc/hui.h	76;"	d
cvDataType	hg/inc/cv.h	/^enum cvDataType$/;"	g
cvDataType	hg/lib/cv.c	/^enum cvDataType cvDataType(const char *term)$/;"	f
cvDate	hg/inc/cv.h	/^    cvDate                 =4,  \/\/ Dates are expected as YYYY-MM-DD$/;"	e	enum:cvDataType
cvFile	hg/lib/cv.c	/^const char *cvFile()$/;"	f
cvFileDeclare	hg/lib/cv.c	/^void cvFileDeclare(const char *filePath)$/;"	f
cvFileRequested	hg/lib/cv.c	/^static char *cvFileRequested = NULL;$/;"	v	file:
cvFloat	hg/inc/cv.h	/^    cvFloat                =3,  \/\/ Floats are possible$/;"	e	enum:cvDataType
cvHiddenIsTrue	hg/lib/cv.c	/^static boolean cvHiddenIsTrue(const char *setting)$/;"	f	file:
cvIndeterminant	hg/inc/cv.h	/^    cvIndeterminant        =0,  \/\/ Indeterminant, likely string$/;"	e	enum:cvDataType
cvInteger	hg/inc/cv.h	/^    cvInteger              =2,  \/\/ Some are known integers$/;"	e	enum:cvDataType
cvLabNormalize	hg/lib/cv.c	/^char *cvLabNormalize(const char *sloppyTerm)$/;"	f
cvLabel	hg/lib/cv.c	/^const char *cvLabel(const char *type,const char *term)$/;"	f
cvNotSearchable	hg/inc/cv.h	/^    cvNotSearchable        =0,  \/\/ Txt is default$/;"	e	enum:cvSearchable
cvOneTermHash	hg/lib/cv.c	/^const struct hash *cvOneTermHash(const char *type,const char *term)$/;"	f
cvSearchByDateRange	hg/inc/cv.h	/^    cvSearchByDateRange    =4,  \/\/ Search by discovered date range (NOT YET IMPLEMENTED)$/;"	e	enum:cvSearchable
cvSearchByFreeText	hg/inc/cv.h	/^    cvSearchByFreeText     =3,  \/\/ Search by free text field$/;"	e	enum:cvSearchable
cvSearchByIntegerRange	hg/inc/cv.h	/^    cvSearchByIntegerRange =5   \/\/ Search by discovered integer range (NOT YET IMPLEMENTED)$/;"	e	enum:cvSearchable
cvSearchByMultiSelect	hg/inc/cv.h	/^    cvSearchByMultiSelect  =1,  \/\/ Search by drop down multi-select of supplied list (NOT YET IMPLEMENTED)$/;"	e	enum:cvSearchable
cvSearchBySingleSelect	hg/inc/cv.h	/^    cvSearchBySingleSelect =2,  \/\/ Search by drop down single-select of supplied list$/;"	e	enum:cvSearchable
cvSearchByWildList	hg/inc/cv.h	/^    cvSearchByWildList     =4,  \/\/ Search by comma delimited list (accepts '%' wildcard)$/;"	e	enum:cvSearchable
cvSearchMethod	hg/lib/cv.c	/^enum cvSearchable cvSearchMethod(const char *term)$/;"	f
cvSearchable	hg/inc/cv.h	/^enum cvSearchable$/;"	g
cvString	hg/inc/cv.h	/^    cvString               =1,  \/\/ Just about all terms are strings$/;"	e	enum:cvDataType
cvTag	hg/lib/cv.c	/^const char *cvTag(const char *type,const char *term)$/;"	f
cvTerm	hg/lib/cv.c	/^const char *cvTerm(const char *tag)$/;"	f
cvTermHash	hg/lib/cv.c	/^const struct hash *cvTermHash(const char *term)$/;"	f
cvTermIsCvDefined	hg/lib/cv.c	/^boolean cvTermIsCvDefined(const char *term)$/;"	f
cvTermIsEmpty	hg/lib/cv.c	/^boolean cvTermIsEmpty(const char *term,const char *val)$/;"	f
cvTermIsHidden	hg/lib/cv.c	/^boolean cvTermIsHidden(const char *term)$/;"	f
cvTermJson	hg/lib/cv.c	/^void cvTermJson(struct dyString *json, char *type, struct hash *termHash)$/;"	f
cvTermNormalized	hg/lib/cv.c	/^const char *cvTermNormalized(const char *sloppyTerm)$/;"	f
cvTermTypeHash	hg/lib/cv.c	/^const struct hash *cvTermTypeHash()$/;"	f
cvTypeNormalized	hg/lib/cv.c	/^const char *cvTypeNormalized(const char *sloppyTerm)$/;"	f
cvValidateTerm	hg/lib/cv.c	/^boolean cvValidateTerm(const char *term,const char *val,char *reason,int len)$/;"	f
cvValidationRule	hg/lib/cv.c	/^const char *cvValidationRule(const char *term)$/;"	f
cvWhiteList	hg/lib/cv.c	/^struct slPair *cvWhiteList(boolean searchTracks, boolean cvDefined)$/;"	f
cytoBand	hg/inc/cytoBand.h	/^struct cytoBand$/;"	s
cytoBandColorDmel	hg/lib/hCytoBand.c	/^static Color cytoBandColorDmel(struct cytoBand *band, $/;"	f	file:
cytoBandColorGiemsa	hg/lib/hCytoBand.c	/^static Color cytoBandColorGiemsa(struct cytoBand *band, $/;"	f	file:
cytoBandCommaIn	hg/lib/cytoBand.c	/^struct cytoBand *cytoBandCommaIn(char **pS, struct cytoBand *ret)$/;"	f
cytoBandCommaOut	hg/inc/cytoBand.h	45;"	d
cytoBandFree	hg/lib/cytoBand.c	/^void cytoBandFree(struct cytoBand **pEl)$/;"	f
cytoBandFreeList	hg/lib/cytoBand.c	/^void cytoBandFreeList(struct cytoBand **pList)$/;"	f
cytoBandLoad	hg/lib/cytoBand.c	/^struct cytoBand *cytoBandLoad(char **row)$/;"	f
cytoBandOutput	hg/lib/cytoBand.c	/^void cytoBandOutput(struct cytoBand *el, FILE *f, char sep, char lastSep) $/;"	f
cytoBandStaticLoad	hg/lib/cytoBand.c	/^void cytoBandStaticLoad(char **row, struct cytoBand *ret)$/;"	f
cytoBandTabOut	hg/inc/cytoBand.h	42;"	d
cytoName	hg/inc/cnpSharp.h	/^    char *cytoName;	\/* Cytoband *\/$/;"	m	struct:cnpSharp
cytoStrain	hg/inc/cnpSharp.h	/^    char *cytoStrain;	\/* gneg, gpos, etc. *\/$/;"	m	struct:cnpSharp
cytorange	hg/inc/bdgpGeneInfo.h	/^    char *cytorange;	\/* cytorange *\/$/;"	m	struct:bdgpGeneInfo
cytorange	hg/inc/bdgpSwissProt.h	/^    char *cytorange;	\/* cytorange *\/$/;"	m	struct:bdgpSwissProt
d	inc/mime.h	/^    int d;                  \/* descriptor (file,socket,etc) *\/$/;"	m	struct:mimeBuf
d1	hg/lib/coordConv.c	/^    int d1,d2;$/;"	m	struct:possibleCoord	file:
d2	hg/lib/coordConv.c	/^    int d1,d2;$/;"	m	struct:possibleCoord	file:
dBox	hg/inc/snoRNAs.h	/^    char *dBox;	\/* D box feature *\/$/;"	m	struct:snoRNAs
dBox	hg/lib/snoRNAs.h	/^    char *dBox;	\/* D box feature *\/$/;"	m	struct:snoRNAs
dF	hg/lib/wiggleCart.c	/^static FILE * dF;$/;"	v	file:
dash1	inc/apacheLog.h	/^    char *dash1;	\/* Unknown, usually a dash *\/$/;"	m	struct:apacheAccessLog
dash2	inc/apacheLog.h	/^    char *dash2;	\/* Unknown, usually a dash *\/$/;"	m	struct:apacheAccessLog
dashIsNull	hg/lib/chromInserts.c	/^static char *dashIsNull(char *s)$/;"	f	file:
datChar	inc/vcf.h	/^    char datChar;$/;"	m	union:vcfDatum
datFlag	inc/vcf.h	/^    boolean datFlag;$/;"	m	union:vcfDatum
datFloat	inc/vcf.h	/^    double datFloat;$/;"	m	union:vcfDatum
datInt	inc/vcf.h	/^    int datInt;$/;"	m	union:vcfDatum
datString	inc/vcf.h	/^    char *datString;$/;"	m	union:vcfDatum
data	hg/inc/altGraphX.h	/^    void *data;                 \/* Associated Data. *\/$/;"	m	struct:spliceEdge
data	hg/inc/wiggle.h	/^    float *data;		\/*	all data winStart to winEnd	*\/$/;"	m	struct:wiggleArray
data	hg/inc/wiggle.h	/^    struct asciiDatum *data;	\/*	individual data items here *\/$/;"	m	struct:wigAsciiData	typeref:struct:wigAsciiData::asciiDatum
data	hg/inc/wiggle.h	/^    struct wiggleDatum *data;	\/* many individual data items here *\/$/;"	m	struct:wiggleData	typeref:struct:wiggleData::wiggleDatum
data	hg/lib/microarray.c	/^    float **data;$/;"	m	struct:maExpDataMatrix	file:
data	hg/lib/microarray.c	/^    int **data;$/;"	m	struct:mapArray	file:
data	inc/annoRow.h	/^    void *data;$/;"	m	struct:annoRow
data	inc/boxClump.h	/^    void *data;			 \/* Some user-associated data. *\/$/;"	m	struct:boxIn
data	inc/chain.h	/^    void *data;			\/* Some associated data pointer. *\/$/;"	m	struct:cBlock
data	inc/fof.h	/^    void *data;             \/* Data associated with key - filled in by client. *\/$/;"	m	struct:fofBatch
data	inc/genoFind.h	/^    void *data;		\/* Type-specific data pointer.  Must be freeMem'able *\/$/;"	m	struct:gfOutput
data	inc/mime.h	/^    char* data;     \/* if size< MAXPARTSIZE and does not contain null *\/$/;"	m	struct:mimePart
data	inc/shaRes.h	/^    void *data;$/;"	m	struct:shaResNode
data	inc/supStitch.h	/^    void *data;			\/* User defined data pointer. *\/$/;"	m	struct:ssBundle
data	inc/twoBit.h	/^    UBYTE *data;		\/* DNA at two bits per base. *\/$/;"	m	struct:twoBit
data	inc/vGfx.h	/^    void *data;		\/* Type specific data. *\/$/;"	m	struct:vGfx
dataArrayOut	hg/lib/wigDataStream.c	/^static void dataArrayOut(struct wiggleDataStream *wds, char *fileName,$/;"	f	file:
dataConstraint	hg/inc/wiggle.h	/^    char *dataConstraint;	\/*	one of < = >= <= == != 'in range' *\/$/;"	m	struct:wiggleDataStream
dataCount	inc/gdf.h	/^    int dataCount;$/;"	m	struct:gdfGene
dataForCallBack	inc/linefile.h	/^    void *dataForCallBack;                                 \/\/ ptr to data needed for callbacks$/;"	m	struct:lineFile
dataFree	hg/inc/mysqlTableStatus.h	/^    int dataFree;	\/* Number of allocated but not used bytes of data *\/$/;"	m	struct:mysqlTableStatus
dataFree	hg/inc/tableStatus.h	/^    long long dataFree;	\/* Usually zero *\/$/;"	m	struct:tableStatus
dataLength	hg/inc/mysqlTableStatus.h	/^    int dataLength;	\/* Length of data file *\/$/;"	m	struct:mysqlTableStatus
dataLength	hg/inc/tableStatus.h	/^    long long dataLength;	\/* Size of data in table *\/$/;"	m	struct:tableStatus
dataOffset	inc/bbiFile.h	/^    bits64 dataOffset;			\/* Offset of data for this level in file. *\/$/;"	m	struct:bbiZoomLevel
dataPoints	inc/gdf.h	/^    struct gdfDataPoint *dataPoints;$/;"	m	struct:gdfGene	typeref:struct:gdfGene::gdfDataPoint
dataRange	hg/inc/wiggle.h	/^    double dataRange;		\/*	for resolution calculation *\/$/;"	m	struct:wigAsciiData
dataRange	hg/inc/wiggle.h	/^    double dataRange;	\/* lowerLimit + dataRange = upperLimit *\/$/;"	m	struct:wiggle
dataRange	hg/inc/wiggle.h	/^    double dataRange;	\/* lowerLimit + dataRange = upperLimit *\/$/;"	m	struct:wiggleData
dataRange	hg/inc/wiggle.h	/^    double dataRange;	\/* lowerLimit + dataRange = upperLimit *\/$/;"	m	struct:wiggleStats
dataSource	inc/peakCluster.h	/^    char *dataSource;		\/* File (or table) *\/$/;"	m	struct:peakSource
dataSpan	hg/lib/wigAsciiToBinary.c	/^static long long dataSpan = 1;		\/* bases spanned per data point *\/$/;"	v	file:
dataValue	hg/inc/bedGraph.h	/^    float dataValue;	\/* data value for this range *\/$/;"	m	struct:bedGraph
data_values	hg/lib/wigAsciiToBinary.c	/^static double *data_values = (double *) NULL;$/;"	v	file:
database	hg/inc/hgFind.h	/^    char *database;               \/* Name of database.  Not allocated here. *\/$/;"	m	struct:hgPositions
database	hg/inc/joiner.h	/^    char *database;		\/* Database. *\/$/;"	m	struct:joinerDtf
database	hg/inc/loweutils.h	/^char *database;$/;"	v
database	inc/blastParse.h	/^    char *database;                     \/* Name of database. *\/$/;"	m	struct:blastQuery
databaseLetters	jkOwnLib/gfOut.c	/^    double databaseLetters; \/* Just used for blast. *\/$/;"	m	struct:axtData	file:
databaseName	jkOwnLib/gfOut.c	/^    char *databaseName;		\/* Just used for blast. *\/$/;"	m	struct:axtData	file:
databaseSeqCount	jkOwnLib/gfOut.c	/^    int databaseSeqCount;	\/* Just used for blast. *\/$/;"	m	struct:axtData	file:
databasesChecked	hg/inc/joiner.h	/^    struct hash *databasesChecked; \/* List of databases to check. *\/$/;"	m	struct:joiner	typeref:struct:joiner::hash
databasesIgnored	hg/inc/joiner.h	/^    struct hash *databasesIgnored; \/* List of database to ignore. *\/$/;"	m	struct:joiner	typeref:struct:joiner::hash
date	hg/inc/coordConv.h	/^    char *date;	\/** Date of version, i.e. Dec 12, 2000 *\/$/;"	m	struct:coordConv
date	hg/inc/goa.h	/^    char *date;	\/* Date annotation made in YYYYMMDD format *\/$/;"	m	struct:goa
dateAdd	lib/common.c	/^static void dateAdd(struct tm *tp,int addYears,int addMonths,int addDays)$/;"	f	file:
dateAddTo	lib/common.c	/^char *dateAddTo(char *date,char *format,int addYears,int addMonths,int addDays)$/;"	f
dateApprv	hg/inc/hgnc.h	/^    char *dateApprv;	\/* Date Approved *\/$/;"	m	struct:hgnc
dateIsOld	lib/common.c	/^boolean dateIsOld(const char *date,const char*format)$/;"	f
dateMod	hg/inc/hgnc.h	/^    char *dateMod;	\/* Date Modified *\/$/;"	m	struct:hgnc
dateNmChange	hg/inc/hgnc.h	/^    char *dateNmChange;	\/* Date Name Changed *\/$/;"	m	struct:hgnc
dateReference	hg/inc/trackVersion.h	/^    char *dateReference;	\/* Ensembl date string for archive reference *\/$/;"	m	struct:trackVersion
dateSymChange	hg/inc/hgnc.h	/^    char *dateSymChange;	\/* Date Symbol Changed *\/$/;"	m	struct:hgnc
dateTimeStamp	hg/lib/wigDataStream.c	/^static char *dateTimeStamp()$/;"	f	file:
dateToSeconds	lib/common.c	/^time_t dateToSeconds(const char *date,const char*format)$/;"	f
daysOfMonth	lib/common.c	/^static int daysOfMonth(struct tm *tp)$/;"	f	file:
db	hg/inc/blatServers.h	/^    char *db;	\/* Database name *\/$/;"	m	struct:blatServers
db	hg/inc/goa.h	/^    char *db;	\/* Database - SPTR for SwissProt *\/$/;"	m	struct:goa
db	hg/inc/hdb.h	/^    char *db;		\/* Database name. *\/$/;"	m	struct:blatServerTable
db	hg/inc/targetDb.h	/^    char *db;	\/* Database to which target has been mapped *\/$/;"	m	struct:targetDb
db	hg/inc/trackVersion.h	/^    char *db;	\/* UCSC database name *\/$/;"	m	struct:trackVersion
db	hg/inc/transMapGene.h	/^    char db[17];	\/* source db *\/$/;"	m	struct:transMapGene
db	hg/inc/transMapSrc.h	/^    char db[17];	\/* source db *\/$/;"	m	struct:transMapSrc
db	hg/inc/ucscRetroOrtho.h	/^    char *db;	\/* database of other species *\/$/;"	m	struct:ucscRetroOrtho
db	hg/inc/variome.h	/^    char *db;	\/* database for item *\/$/;"	m	struct:variome
db	hg/inc/wiggle.h	/^    char *db;			\/*	database name	*\/$/;"	m	struct:wiggleDataStream
db	hg/inc/wikiTrack.h	/^    char *db;	\/* database for item *\/$/;"	m	struct:wikiTrack
db	hg/lib/hdb.c	/^    char *db;                   \/* database this is associated with *\/$/;"	m	struct:largeSeqFile	file:
db	inc/ens.h	/^    char *db;			\/* Database used. *\/$/;"	m	struct:ensAnalysis
dbBaseCount	inc/blastParse.h	/^    int dbBaseCount;                    \/* Number of bases in database. *\/$/;"	m	struct:blastQuery
dbCgiName	hg/lib/web.c	/^static char *dbCgiName = "db";$/;"	v	file:
dbDataLoad	hg/inc/customTrack.h	/^    boolean dbDataLoad;		\/* FALSE == failed loading *\/$/;"	m	struct:customTrack
dbDb	hg/inc/dbDb.h	/^struct dbDb$/;"	s
dbDbCommaIn	hg/lib/dbDb.c	/^struct dbDb *dbDbCommaIn(char **pS, struct dbDb *ret)$/;"	f
dbDbCommaOut	hg/inc/dbDb.h	67;"	d
dbDbFree	hg/lib/dbDb.c	/^void dbDbFree(struct dbDb **pEl)$/;"	f
dbDbFreeList	hg/lib/dbDb.c	/^void dbDbFreeList(struct dbDb **pList)$/;"	f
dbDbLoad	hg/lib/dbDb.c	/^struct dbDb *dbDbLoad(char **row)$/;"	f
dbDbLoadAll	hg/lib/dbDb.c	/^struct dbDb *dbDbLoadAll(char *fileName) $/;"	f
dbDbLoadAllByChar	hg/lib/dbDb.c	/^struct dbDb *dbDbLoadAllByChar(char *fileName, char chopper) $/;"	f
dbDbLoadAllByTab	hg/inc/dbDb.h	45;"	d
dbDbOutput	hg/lib/dbDb.c	/^void dbDbOutput(struct dbDb *el, FILE *f, char sep, char lastSep) $/;"	f
dbDbStaticLoad	hg/lib/dbDb.c	/^void dbDbStaticLoad(char **row, struct dbDb *ret)$/;"	f
dbDbTabOut	hg/inc/dbDb.h	64;"	d
dbList	hg/inc/joiner.h	/^    struct slName *dbList;	\/* List of databases. *\/$/;"	m	struct:joinerIgnore	typeref:struct:joinerIgnore::slName
dbList	hg/inc/joiner.h	/^    struct slName *dbList;	\/* List of databases. *\/$/;"	m	struct:joinerTable	typeref:struct:joinerTable::slName
dbList	hg/inc/joiner.h	/^    struct slName *dbList;	\/* List of possible databases. *\/$/;"	m	struct:joinerField	typeref:struct:joinerField::slName
dbObjectId	hg/inc/goa.h	/^    char *dbObjectId;	\/* Database accession - like 'Q13448' *\/$/;"	m	struct:goa
dbObjectId	hg/inc/goaPart.h	/^    char *dbObjectId;	\/* Database accession - like 'Q13448' *\/$/;"	m	struct:goaPart
dbObjectName	hg/inc/goa.h	/^    char *dbObjectName;	\/* (Optional) multi-word name of gene or product *\/$/;"	m	struct:goa
dbObjectSymbol	hg/inc/goa.h	/^    char *dbObjectSymbol;	\/* Name - like 'CIA1_HUMAN' *\/$/;"	m	struct:goa
dbObjectSymbol	hg/inc/goaPart.h	/^    char *dbObjectSymbol;	\/* Name - like 'CIA1_HUMAN' *\/$/;"	m	struct:goaPart
dbObjectType	hg/inc/goa.h	/^    char *dbObjectType;	\/* Either gene, transcript, protein, or protein_structure *\/$/;"	m	struct:goa
dbRIP	hg/inc/dbRIP.h	/^struct dbRIP$/;"	s
dbRIPCommaIn	hg/lib/dbRIP.c	/^struct dbRIP *dbRIPCommaIn(char **pS, struct dbRIP *ret)$/;"	f
dbRIPCommaOut	hg/inc/dbRIP.h	105;"	d
dbRIPFree	hg/lib/dbRIP.c	/^void dbRIPFree(struct dbRIP **pEl)$/;"	f
dbRIPFreeList	hg/lib/dbRIP.c	/^void dbRIPFreeList(struct dbRIP **pList)$/;"	f
dbRIPLoad	hg/lib/dbRIP.c	/^struct dbRIP *dbRIPLoad(char **row)$/;"	f
dbRIPLoadAll	hg/lib/dbRIP.c	/^struct dbRIP *dbRIPLoadAll(char *fileName) $/;"	f
dbRIPLoadAllByChar	hg/lib/dbRIP.c	/^struct dbRIP *dbRIPLoadAllByChar(char *fileName, char chopper) $/;"	f
dbRIPLoadAllByTab	hg/inc/dbRIP.h	58;"	d
dbRIPLoadByQuery	hg/lib/dbRIP.c	/^struct dbRIP *dbRIPLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
dbRIPOutput	hg/lib/dbRIP.c	/^void dbRIPOutput(struct dbRIP *el, FILE *f, char sep, char lastSep) $/;"	f
dbRIPSaveToDb	hg/lib/dbRIP.c	/^void dbRIPSaveToDb(struct sqlConnection *conn, struct dbRIP *el, char *tableName, int updateSize)$/;"	f
dbRIPSaveToDbEscaped	hg/lib/dbRIP.c	/^void dbRIPSaveToDbEscaped(struct sqlConnection *conn, struct dbRIP *el, char *tableName, int updateSize)$/;"	f
dbRIPStaticLoad	hg/lib/dbRIP.c	/^void dbRIPStaticLoad(char **row, struct dbRIP *ret)$/;"	f
dbRIPTabOut	hg/inc/dbRIP.h	102;"	d
dbRIP_DISEASE	hg/inc/dbRIP.h	116;"	d
dbReference	hg/inc/goa.h	/^    char *dbReference;	\/* something like SGD:8789|PMID:2676709 *\/$/;"	m	struct:goa
dbSTSid	hg/inc/stsInfo.h	/^    unsigned dbSTSid;	\/* ID number in UniSTS or dbSTS *\/$/;"	m	struct:stsInfo
dbSTSid	hg/inc/stsInfo2.h	/^    unsigned dbSTSid;	\/* ID number in UniSTS or dbSTS *\/$/;"	m	struct:stsInfo2
dbSeqCount	inc/blastParse.h	/^    int dbSeqCount;                     \/* Number of sequences in database. *\/$/;"	m	struct:blastQuery
dbSnpRs	hg/inc/dbSnpRs.h	/^struct dbSnpRs$/;"	s
dbSnpRsCommaIn	hg/lib/dbSnpRs.c	/^struct dbSnpRs *dbSnpRsCommaIn(char **pS, struct dbSnpRs *ret)$/;"	f
dbSnpRsCommaOut	hg/inc/dbSnpRs.h	92;"	d
dbSnpRsFree	hg/lib/dbSnpRs.c	/^void dbSnpRsFree(struct dbSnpRs **pEl)$/;"	f
dbSnpRsFreeList	hg/lib/dbSnpRs.c	/^void dbSnpRsFreeList(struct dbSnpRs **pList)$/;"	f
dbSnpRsLoad	hg/lib/dbSnpRs.c	/^struct dbSnpRs *dbSnpRsLoad(char **row)$/;"	f
dbSnpRsLoadAll	hg/lib/dbSnpRs.c	/^struct dbSnpRs *dbSnpRsLoadAll(char *fileName) $/;"	f
dbSnpRsLoadAllByChar	hg/lib/dbSnpRs.c	/^struct dbSnpRs *dbSnpRsLoadAllByChar(char *fileName, char chopper) $/;"	f
dbSnpRsLoadAllByTab	hg/inc/dbSnpRs.h	45;"	d
dbSnpRsLoadByQuery	hg/lib/dbSnpRs.c	/^struct dbSnpRs *dbSnpRsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
dbSnpRsOutput	hg/lib/dbSnpRs.c	/^void dbSnpRsOutput(struct dbSnpRs *el, FILE *f, char sep, char lastSep) $/;"	f
dbSnpRsSaveToDb	hg/lib/dbSnpRs.c	/^void dbSnpRsSaveToDb(struct sqlConnection *conn, struct dbSnpRs *el, char *tableName, int updateSize)$/;"	f
dbSnpRsSaveToDbEscaped	hg/lib/dbSnpRs.c	/^void dbSnpRsSaveToDbEscaped(struct sqlConnection *conn, struct dbSnpRs *el, char *tableName, int updateSize)$/;"	f
dbSnpRsStaticLoad	hg/lib/dbSnpRs.c	/^void dbSnpRsStaticLoad(char **row, struct dbSnpRs *ret)$/;"	f
dbSnpRsTabOut	hg/inc/dbSnpRs.h	89;"	d
dbStderrFile	hg/inc/customTrack.h	/^    char *dbStderrFile;		\/* trash file to receive stderr of loaders *\/$/;"	m	struct:customTrack
dbTableName	hg/inc/customTrack.h	/^    char *dbTableName;		\/* name of table in trash database *\/$/;"	m	struct:customTrack
dbTblParse	hg/lib/hdb.c	/^static char *dbTblParse(char *defaultDb, char *tbl, char **tblRet,$/;"	f	file:
dbToProfile	hg/lib/jksql.c	/^static struct hash* dbToProfile = NULL;           \/\/ db to sqlProfile$/;"	v	typeref:struct:hash	file:
dbTrack	hg/inc/customTrack.h	/^    boolean dbTrack;		\/* This track is in the trash database *\/$/;"	m	struct:customTrack
dbTrackType	hg/inc/customTrack.h	/^    char *dbTrackType;		\/* type of data in this db table *\/$/;"	m	struct:customTrack
dbVersion	inc/ens.h	/^    char *dbVersion;		\/* Version of database. *\/$/;"	m	struct:ensAnalysis
dbgFile	hg/lib/wiggleCart.c	/^static char dbgFile[] = "trash\/wig.dbg";$/;"	v	file:
dbgMsg	hg/lib/wiggleCart.c	/^char dbgMsg[DBGMSGSZ+1];$/;"	v
dbs	hg/lib/jksql.c	/^    struct slName *dbs; \/\/ database associated with profile, can be NULL.$/;"	m	struct:sqlProfile	typeref:struct:sqlProfile::slName	file:
dbxrefs	inc/gff3.h	/^    struct slName *dbxrefs; \/* database cross references. *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::slName
debugAbort	lib/errabort.c	/^static void debugAbort()$/;"	f	file:
debugOpened	hg/lib/wiggleCart.c	/^static boolean debugOpened = FALSE;$/;"	v	file:
debugPushPopErr	lib/errabort.c	/^    boolean debugPushPopErr;        \/\/ generate stack dump on push\/pop error$/;"	m	struct:perThreadAbortVars	file:
decodeAvg	hg/inc/recombRate.h	/^    float decodeAvg;	\/* Calculated deCODE recombination rate *\/$/;"	m	struct:recombRate
decodeChr	hg/inc/stsInfo2.h	/^    char *decodeChr;	\/* Chromosome in deCODE TNG map *\/$/;"	m	struct:stsInfo2
decodeChrom	hg/inc/stsMap.h	/^    char *decodeChrom;	\/* Chromosome (no chr) from deCODE genetic map or 0 if none *\/$/;"	m	struct:stsMap
decodeFemale	hg/inc/recombRate.h	/^    float decodeFemale;	\/* Calculated deCODE female recombination rate *\/$/;"	m	struct:recombRate
decodeLOD	hg/inc/stsInfo2.h	/^    float decodeLOD;	\/* LOD score in deCODE TNG map *\/$/;"	m	struct:stsInfo2
decodeMale	hg/inc/recombRate.h	/^    float decodeMale;	\/* Calculated deCODE male recombination rate *\/$/;"	m	struct:recombRate
decodeName	hg/inc/stsInfo2.h	/^    char *decodeName;	\/* Name in deCODE map *\/$/;"	m	struct:stsInfo2
decodePos	hg/inc/stsInfo2.h	/^    float decodePos;	\/* Position in deCODE TNG map *\/$/;"	m	struct:stsInfo2
decodePos	hg/inc/stsMap.h	/^    float decodePos;	\/* Position on deCODE genetic map *\/$/;"	m	struct:stsMap
decoder	lib/gifdecomp.c	/^static WORD decoder(linewidth,buf,stack,suffix,prefix)$/;"	f	file:
decomma	lib/blastParse.c	/^void decomma(char *s)$/;"	f
def	inc/annoColumn.h	/^    struct asColumn *def;$/;"	m	struct:annoColumn	typeref:struct:annoColumn::asColumn
defaultAbort	lib/errabort.c	/^static void defaultAbort()$/;"	f	file:
defaultAlloc	lib/memalloc.c	/^static void *defaultAlloc(size_t size)$/;"	f	file:
defaultCombine	hg/inc/microarray.h	/^    struct maGrouping *defaultCombine;$/;"	m	struct:microarrayGroups	typeref:struct:microarrayGroups::maGrouping
defaultDb	hg/inc/defaultDb.h	/^struct defaultDb$/;"	s
defaultDbCommaIn	hg/lib/defaultDb.c	/^struct defaultDb *defaultDbCommaIn(char **pS, struct defaultDb *ret)$/;"	f
defaultDbCommaOut	hg/inc/defaultDb.h	46;"	d
defaultDbFree	hg/lib/defaultDb.c	/^void defaultDbFree(struct defaultDb **pEl)$/;"	f
defaultDbFreeList	hg/lib/defaultDb.c	/^void defaultDbFreeList(struct defaultDb **pList)$/;"	f
defaultDbLoad	hg/lib/defaultDb.c	/^struct defaultDb *defaultDbLoad(char **row)$/;"	f
defaultDbLoadAll	hg/lib/defaultDb.c	/^struct defaultDb *defaultDbLoadAll(char *fileName) $/;"	f
defaultDbOutput	hg/lib/defaultDb.c	/^void defaultDbOutput(struct defaultDb *el, FILE *f, char sep, char lastSep) $/;"	f
defaultDbStaticLoad	hg/lib/defaultDb.c	/^void defaultDbStaticLoad(char **row, struct defaultDb *ret)$/;"	f
defaultDbTabOut	hg/inc/defaultDb.h	43;"	d
defaultDir	lib/udc.c	/^static char *defaultDir = "\/tmp\/udcCache";$/;"	v	file:
defaultExpansionFactor	inc/hash.h	79;"	d
defaultFree	lib/memalloc.c	/^static void defaultFree(void *vpt)$/;"	f	file:
defaultGapCosts	lib/gapCalc.c	/^static char *defaultGapCosts =$/;"	v	file:
defaultGdfCache	lib/wormdna.c	/^struct wormGdfCache *defaultGdfCache = &wormSangerGdfCache;$/;"	v	typeref:struct:wormGdfCache
defaultHubPublicTableName	hg/inc/hubConnect.h	10;"	d
defaultHubStatusTableName	hg/inc/hubConnect.h	16;"	d
defaultIsClosed	hg/inc/grp.h	/^    boolean defaultIsClosed; \/* true if group is closed by default in hgTracks (this column is optional, and may be missing in some installations. *\/$/;"	m	struct:grp
defaultMemHandler	lib/memalloc.c	/^static struct memHandler defaultMemHandler = $/;"	v	typeref:struct:memHandler	file:
defaultPos	hg/inc/dbDb.h	/^    char *defaultPos;	\/* Default starting position *\/$/;"	m	struct:dbDb
defaultProfile	hg/lib/jksql.c	/^static struct sqlProfile *defaultProfile = NULL;  \/\/ default profile, also in profiles list$/;"	v	typeref:struct:sqlProfile	file:
defaultProfileName	hg/lib/jksql.c	/^char *defaultProfileName = "db";                  \/\/ name of default profile$/;"	v
defaultRealloc	lib/memalloc.c	/^static void *defaultRealloc(void *vpt, size_t size)$/;"	f	file:
defaultVaWarn	lib/errabort.c	/^static void defaultVaWarn(char *format, va_list args)$/;"	f	file:
defaultVal	hg/inc/columnInfo.h	/^    char *defaultVal;	\/* Default value filled. *\/$/;"	m	struct:columnInfo
defaultVal	hg/inc/jksql.h	/^    char *defaultVal;     \/* default value *\/$/;"	m	struct:sqlFieldInfo
defaultVal	hg/lib/genePredReader.c	/^    char *defaultVal;$/;"	m	struct:field	file:
defaultVis	hg/lib/trackDbCustom.c	/^    enum trackVisibility defaultVis;$/;"	m	struct:superTrackInfo	typeref:enum:superTrackInfo::trackVisibility	file:
definedFieldCount	inc/bbiFile.h	/^    bits16 definedFieldCount;   \/* Number of columns using bed standard definitions. *\/$/;"	m	struct:bbiFile
delConrad2	hg/inc/delConrad2.h	/^struct delConrad2$/;"	s
delConrad2CommaIn	hg/lib/delConrad2.c	/^struct delConrad2 *delConrad2CommaIn(char **pS, struct delConrad2 *ret)$/;"	f
delConrad2CommaOut	hg/inc/delConrad2.h	66;"	d
delConrad2Free	hg/lib/delConrad2.c	/^void delConrad2Free(struct delConrad2 **pEl)$/;"	f
delConrad2FreeList	hg/lib/delConrad2.c	/^void delConrad2FreeList(struct delConrad2 **pList)$/;"	f
delConrad2Load	hg/lib/delConrad2.c	/^struct delConrad2 *delConrad2Load(char **row)$/;"	f
delConrad2LoadAll	hg/lib/delConrad2.c	/^struct delConrad2 *delConrad2LoadAll(char *fileName) $/;"	f
delConrad2LoadAllByChar	hg/lib/delConrad2.c	/^struct delConrad2 *delConrad2LoadAllByChar(char *fileName, char chopper) $/;"	f
delConrad2LoadAllByTab	hg/inc/delConrad2.h	44;"	d
delConrad2Output	hg/lib/delConrad2.c	/^void delConrad2Output(struct delConrad2 *el, FILE *f, char sep, char lastSep) $/;"	f
delConrad2StaticLoad	hg/lib/delConrad2.c	/^void delConrad2StaticLoad(char **row, struct delConrad2 *ret)$/;"	f
delConrad2TabOut	hg/inc/delConrad2.h	63;"	d
delHinds2	hg/inc/delHinds2.h	/^struct delHinds2$/;"	s
delHinds2CommaIn	hg/lib/delHinds2.c	/^struct delHinds2 *delHinds2CommaIn(char **pS, struct delHinds2 *ret)$/;"	f
delHinds2CommaOut	hg/inc/delHinds2.h	59;"	d
delHinds2Free	hg/lib/delHinds2.c	/^void delHinds2Free(struct delHinds2 **pEl)$/;"	f
delHinds2FreeList	hg/lib/delHinds2.c	/^void delHinds2FreeList(struct delHinds2 **pList)$/;"	f
delHinds2Load	hg/lib/delHinds2.c	/^struct delHinds2 *delHinds2Load(char **row)$/;"	f
delHinds2LoadAll	hg/lib/delHinds2.c	/^struct delHinds2 *delHinds2LoadAll(char *fileName) $/;"	f
delHinds2LoadAllByChar	hg/lib/delHinds2.c	/^struct delHinds2 *delHinds2LoadAllByChar(char *fileName, char chopper) $/;"	f
delHinds2LoadAllByTab	hg/inc/delHinds2.h	37;"	d
delHinds2Output	hg/lib/delHinds2.c	/^void delHinds2Output(struct delHinds2 *el, FILE *f, char sep, char lastSep) $/;"	f
delHinds2StaticLoad	hg/lib/delHinds2.c	/^void delHinds2StaticLoad(char **row, struct delHinds2 *ret)$/;"	f
delHinds2TabOut	hg/inc/delHinds2.h	56;"	d
delayTimeHi	lib/gifwrite.c	/^    unsigned char delayTimeLo,delayTimeHi;$/;"	m	struct:gif_gce	file:
delayTimeLo	lib/gifwrite.c	/^    unsigned char delayTimeLo,delayTimeHi;$/;"	m	struct:gif_gce	file:
deleteThis	hg/inc/mdb.h	/^    boolean deleteThis;      \/\/ Used when loading formatted file which may contain delete requests$/;"	m	struct:mdbObj
deleteThis	hg/inc/metaTbl.h	/^    boolean deleteThis;       \/\/ Used when loading formatted file which may contain delete requests$/;"	m	struct:metaObj
deleteVariomeItem	hg/lib/variome.c	/^void deleteVariomeItem(char *db, int id)$/;"	f
delimitedTableSize	hg/lib/chromGraphFactory.c	/^static int delimitedTableSize(struct slName *list, int colDelim)$/;"	f	file:
dependencyList	hg/inc/joiner.h	/^    struct joinerDependency *dependencyList; \/* List of table dependencies. *\/$/;"	m	struct:joiner	typeref:struct:joiner::joinerDependency
dependencySyntaxErr	hg/lib/joiner.c	/^static void dependencySyntaxErr(struct lineFile *lf)$/;"	f	file:
dependsOnList	hg/inc/joiner.h	/^    struct joinerTable *dependsOnList;	\/* List of tables it depends on. *\/$/;"	m	struct:joinerDependency	typeref:struct:joinerDependency::joinerTable
derivedAllele	hg/inc/hgdpGeo.h	/^    char derivedAllele;	\/* Derived allele on forward strand of reference genome assembly *\/$/;"	m	struct:hgdpGeo
derivedAlleleFreq	hg/inc/hapmapAlleleFreq.h	/^    float derivedAlleleFreq;	\/* Derived allele frequency *\/$/;"	m	struct:hapmapAlleleFreq
derivesFrom	inc/gff3.h	/^    struct gff3Ann *derivesFrom; \/* Object for derivesFromId *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3Ann
derivesFromId	inc/gff3.h	/^    char *derivesFromId; \/* Used to disambiguate the relationship between one$/;"	m	struct:gff3Ann
des_dist	lib/gemfont.h	/^WORD	des_dist;	\/* des for descender. *\/$/;"	m	struct:font_hdr
descFlag	lib/bamFile.c	/^static void descFlag(unsigned flag, unsigned bitMask, char *desc, boolean makeRed,$/;"	f	file:
description	hg/inc/arcogdesc.h	/^    char *description;	\/* arCOG description *\/$/;"	m	struct:arcogdesc
description	hg/inc/bedDetail.h	/^    char *description;	\/* Long description of item for the details page *\/$/;"	m	struct:bedDetail
description	hg/inc/borkPseudoHom.h	/^    char *description;	\/* Freeform (except for no tabs) description *\/$/;"	m	struct:borkPseudoHom
description	hg/inc/dbDb.h	/^    char *description;	\/* Short description - 'Aug. 8, 2001' or the like *\/$/;"	m	struct:dbDb
description	hg/inc/ecAttribute.h	/^    char *description;	\/* EC attribute description *\/$/;"	m	struct:ecAttribute
description	hg/inc/ecAttributeCode.h	/^    char *description;	\/* EC attribute code description *\/$/;"	m	struct:ecAttributeCode
description	hg/inc/ecCode.h	/^    char *description;	\/* EC code description *\/$/;"	m	struct:ecCode
description	hg/inc/ensXRefZfish.h	/^    char *description;	\/* Description *\/$/;"	m	struct:ensXRefZfish
description	hg/inc/expRecord.h	/^    char *description;	\/* description of experiment *\/$/;"	m	struct:expRecord
description	hg/inc/hgFind.h	/^     char *description;		\/* Position description - a sentence or so. *\/$/;"	m	struct:hgPos
description	hg/inc/hgFind.h	/^    char *description;          \/* Table description. No allocated here *\/$/;"	m	struct:hgPosTable
description	hg/inc/jaxQTL.h	/^    char *description;	\/* MGI description *\/$/;"	m	struct:jaxQTL
description	hg/inc/jaxQTL2.h	/^    char *description;	\/* MGI description *\/$/;"	m	struct:jaxQTL2
description	hg/inc/jaxQTL3.h	/^    char *description;	\/* MGI description *\/$/;"	m	struct:jaxQTL3
description	hg/inc/joiner.h	/^    char *description;			\/* Short description. *\/$/;"	m	struct:joinerSet
description	hg/inc/kgXref.h	/^    char *description;	\/* Description *\/$/;"	m	struct:kgXref
description	hg/inc/makeItemsItem.h	/^    char *description;	\/* Longer item description *\/$/;"	m	struct:makeItemsItem
description	hg/inc/microarray.h	/^    char *description;$/;"	m	struct:maGrouping
description	hg/inc/sage.h	/^    char *description;	\/* Description from uni-gene fasta headers. *\/$/;"	m	struct:sage
description	hg/inc/sanger22extra.h	/^    char *description;	\/* Description from Sanger gene GFFs *\/$/;"	m	struct:sanger22extra
description	hg/inc/scopDes.h	/^    char *description;	\/* Descriptive text. *\/$/;"	m	struct:scopDes
description	hg/inc/sgdDescription.h	/^    char *description;	\/* Description of feature *\/$/;"	m	struct:sgdDescription
description	hg/inc/snpExceptions.h	/^    char *description;	\/* Text string for readability *\/$/;"	m	struct:snpExceptions
description	hg/inc/softberryHom.h	/^    char *description;	\/* Freeform (except for no tabs) description *\/$/;"	m	struct:softberryHom
description	hg/inc/targetDb.h	/^    char *description;	\/* Brief description for select box *\/$/;"	m	struct:targetDb
description	inc/hmmPfamParse.h	/^    char *description; \/* Longer description *\/$/;"	m	struct:hpfModel
description	inc/vcf.h	/^    char *description;		\/\/ Brief description of info$/;"	m	struct:vcfInfoDef
description	inc/wormdna.h	/^    char *description;          \/* One line description. *\/$/;"	m	struct:wormCdnaInfo
descriptionKey	hg/inc/variome.h	/^    char *descriptionKey;	\/* name of wiki description page *\/$/;"	m	struct:variome
descriptionKey	hg/inc/wikiTrack.h	/^    char *descriptionKey;	\/* name of wiki description page *\/$/;"	m	struct:wikiTrack
descriptor	hg/inc/easyGene.h	/^    char *descriptor;	\/* EasyGene descriptor *\/$/;"	m	struct:easyGene
desription	hg/inc/sageExp.h	/^    char *desription;	\/* description of experiment. *\/$/;"	m	struct:sageExp
detection	hg/inc/affyAtlas.h	/^    char detection[3];	\/* not sure... *\/$/;"	m	struct:affyAtlas
determineNlType	lib/linefile.c	/^static void determineNlType(struct lineFile *lf, char *buf, int bufSize)$/;"	f	file:
dgAddNode	lib/diGraph.c	/^struct dgNode *dgAddNode(struct diGraph *dg, char *name, void *val)$/;"	f
dgAddNumberedNode	lib/diGraph.c	/^struct dgNode *dgAddNumberedNode(struct diGraph *dg, int id, void *val)$/;"	f
dgAddedRangeConsistent	lib/dgRange.c	/^boolean dgAddedRangeConsistent(struct diGraph *rangeGraph,$/;"	f
dgClearConnFlags	lib/diGraph.c	/^void dgClearConnFlags(struct diGraph *dg)$/;"	f
dgClearVisitFlags	lib/diGraph.c	/^void dgClearVisitFlags(struct diGraph *dg)$/;"	f
dgConnect	lib/diGraph.c	/^struct dgEdge *dgConnect(struct diGraph *dg, struct dgNode *a, struct dgNode *b)$/;"	f
dgConnectWithVal	lib/diGraph.c	/^struct dgEdge *dgConnectWithVal(struct diGraph *dg, struct dgNode *a, $/;"	f
dgConnectedComponents	lib/diGraph.c	/^int dgConnectedComponents(struct diGraph *dg)$/;"	f
dgConnectedComponentsWithVals	lib/diGraph.c	/^int dgConnectedComponentsWithVals(struct diGraph *dg)$/;"	f
dgConnection	inc/diGraph.h	/^struct dgConnection$/;"	s
dgConstrainedPriorityOrder	lib/diGraph.c	/^struct dgNodeRef *dgConstrainedPriorityOrder(struct diGraph *dg)$/;"	f
dgDirectlyFollows	lib/diGraph.c	/^struct dgEdge *dgDirectlyFollows(struct diGraph *dg, struct dgNode *a, struct dgNode *b)$/;"	f
dgDisconnect	lib/diGraph.c	/^void dgDisconnect(struct diGraph *dg, struct dgNode *a, struct dgNode *b)$/;"	f
dgDumpGraph	lib/diGraph.c	/^void dgDumpGraph(struct diGraph *dg, FILE *out, boolean hideIsolated)$/;"	f
dgEdge	inc/diGraph.h	/^struct dgEdge$/;"	s
dgEdgeRef	inc/diGraph.h	/^struct dgEdgeRef$/;"	s
dgFindConnectedToNode	lib/diGraph.c	/^struct dgNodeRef *dgFindConnectedToNode(struct diGraph *dg, struct dgNode *a)$/;"	f
dgFindNewConnected	lib/diGraph.c	/^struct dgNodeRef *dgFindNewConnected(struct diGraph *dg, struct dgNode *a)$/;"	f
dgFindNewConnectedWithVals	lib/diGraph.c	/^struct dgNodeRef *dgFindNewConnectedWithVals(struct diGraph *dg, struct dgNode *a)$/;"	f
dgFindNextConnected	lib/diGraph.c	/^struct dgNodeRef *dgFindNextConnected(struct diGraph *dg)$/;"	f
dgFindNextConnectedWithVals	lib/diGraph.c	/^struct dgNodeRef *dgFindNextConnectedWithVals(struct diGraph *dg)$/;"	f
dgFindNode	lib/diGraph.c	/^struct dgNode *dgFindNode(struct diGraph *dg, char *name)$/;"	f
dgFindNodeInConList	lib/diGraph.c	/^struct dgConnection *dgFindNodeInConList(struct dgConnection *conList, struct dgNode *node)$/;"	f
dgFindNodeInRefList	lib/diGraph.c	/^struct dgNodeRef *dgFindNodeInRefList(struct dgNodeRef *refList, struct dgNode *node)$/;"	f
dgFindNumberedNode	lib/diGraph.c	/^struct dgNode *dgFindNumberedNode(struct diGraph *dg, int id)$/;"	f
dgFindPath	lib/diGraph.c	/^struct dgNodeRef *dgFindPath(struct diGraph *dg, struct dgNode *a, struct dgNode *b)$/;"	f
dgFindSubEdges	lib/diGraph.c	/^struct dgEdgeRef *dgFindSubEdges(struct diGraph *dg, struct dgNodeRef *subGraph)$/;"	f
dgFree	lib/diGraph.c	/^void dgFree(struct diGraph **pGraph)$/;"	f
dgHasCycles	lib/diGraph.c	/^boolean dgHasCycles(struct diGraph *dg)$/;"	f
dgNew	lib/diGraph.c	/^struct diGraph *dgNew()$/;"	f
dgNextList	lib/diGraph.c	/^struct dgConnection *dgNextList(struct dgNode *node)$/;"	f
dgNode	inc/diGraph.h	/^struct dgNode$/;"	s
dgNodeFree	lib/diGraph.c	/^static void dgNodeFree(struct dgNode **pNode)$/;"	f	file:
dgNodeFreeList	lib/diGraph.c	/^static void dgNodeFreeList(struct dgNode **pList)$/;"	f	file:
dgNodeName	lib/diGraph.c	/^void *dgNodeName(struct dgNode *node)$/;"	f
dgNodeNumber	lib/diGraph.c	/^int dgNodeNumber(struct dgNode *node)$/;"	f
dgNodeRef	inc/diGraph.h	/^struct dgNodeRef$/;"	s
dgNodeVal	lib/diGraph.c	/^void *dgNodeVal(struct dgNode *node)$/;"	f
dgParentsAllVisited	lib/diGraph.c	/^boolean dgParentsAllVisited(struct dgNode *node)$/;"	f
dgPathExists	lib/diGraph.c	/^boolean dgPathExists(struct diGraph *dg, struct dgNode *a, struct dgNode *b)$/;"	f
dgPrevList	lib/diGraph.c	/^struct dgConnection *dgPrevList(struct dgNode *node)$/;"	f
dgRangesConsistent	lib/dgRange.c	/^boolean dgRangesConsistent(struct diGraph *rangeGraph,$/;"	f
dgRemoveFromConList	lib/diGraph.c	/^static struct dlNode *dgRemoveFromConList(struct dgConnection **pConList, $/;"	f	file:
dgSwapEdges	lib/diGraph.c	/^void dgSwapEdges(struct diGraph *dg, struct dgEdgeRef *erList)$/;"	f
dgTopoSort	lib/diGraph.c	/^void dgTopoSort(struct diGraph *dg)$/;"	f
dgv	hg/inc/dgv.h	/^struct dgv$/;"	s
dgvCommaIn	hg/lib/dgv.c	/^struct dgv *dgvCommaIn(char **pS, struct dgv *ret)$/;"	f
dgvCommaOut	hg/inc/dgv.h	69;"	d
dgvFree	hg/lib/dgv.c	/^void dgvFree(struct dgv **pEl)$/;"	f
dgvFreeList	hg/lib/dgv.c	/^void dgvFreeList(struct dgv **pList)$/;"	f
dgvLoad	hg/lib/dgv.c	/^struct dgv *dgvLoad(char **row)$/;"	f
dgvLoadAll	hg/lib/dgv.c	/^struct dgv *dgvLoadAll(char *fileName) $/;"	f
dgvLoadAllByChar	hg/lib/dgv.c	/^struct dgv *dgvLoadAllByChar(char *fileName, char chopper) $/;"	f
dgvLoadAllByTab	hg/inc/dgv.h	47;"	d
dgvOutput	hg/lib/dgv.c	/^void dgvOutput(struct dgv *el, FILE *f, char sep, char lastSep) $/;"	f
dgvStaticLoad	hg/lib/dgv.c	/^void dgvStaticLoad(char **row, struct dgv *ret)$/;"	f
dgvTabOut	hg/inc/dgv.h	66;"	d
diGraph	inc/diGraph.h	/^struct diGraph$/;"	s
diagonal	inc/genoFind.h	/^   bits32 diagonal;		\/* tStart + qSize - qStart. *\/$/;"	m	struct:gfHit
differentString	inc/common.h	724;"	d
differentStringNullOk	lib/common.c	/^int differentStringNullOk(char *a, char *b)$/;"	f
differentWord	lib/common.c	/^int differentWord(char *s1, char *s2)$/;"	f
digitsBaseTen	lib/obscure.c	/^int digitsBaseTen(int x)$/;"	f
digitsBaseTwo	lib/obscure.c	/^int digitsBaseTwo(unsigned long x)$/;"	f
dimA	hg/lib/hui.c	/^    dimA=3, \/\/ dimA is start of first of the optional non-matrix, non-view dimensions$/;"	e	enum:__anon3	file:
dimMax	hg/lib/hui.c	/^    int dimMax;               \/\/ Arrays of "members" structs will be ordered as [view][dimX][dimY][dimA]... with first 3 in fixed spots and rest as found (and non-empty)$/;"	m	struct:_membersForAll	file:
dimV	hg/lib/hui.c	/^    dimV=0, \/\/ View first$/;"	e	enum:__anon3	file:
dimX	hg/lib/hui.c	/^    dimX=1, \/\/ X & Y next$/;"	e	enum:__anon3	file:
dimY	hg/lib/hui.c	/^    dimY=2,$/;"	e	enum:__anon3	file:
dimensionSettingsGet	hg/lib/hui.c	/^static dimensions_t *dimensionSettingsGet(struct trackDb *parentTdb)$/;"	f	file:
dimensions	hg/lib/hui.c	/^    dimensions_t *dimensions; \/\/ One struct describing "deimensions" setting"  (e.g. dimX:cell dimY:antibody dimA:treatment)$/;"	m	struct:_membersForAll	file:
dimensionsExist	hg/lib/hui.c	/^boolean dimensionsExist(struct trackDb *parentTdb)$/;"	f
dimensionsFree	hg/lib/hui.c	/^static void dimensionsFree(dimensions_t **dimensions)$/;"	f	file:
dimensions_t	hg/lib/hui.c	/^} dimensions_t;$/;"	t	typeref:struct:_dimensions	file:
direction	inc/cda.h	/^    char direction;                 \/* Direction of cDNA relative to transcription + or - *\/$/;"	m	struct:cdaAli
discard	inc/annoFormatter.h	/^    void (*discard)(struct annoFormatter *self);$/;"	m	struct:annoFormatter
discontigFeatureFinish	lib/gff3.c	/^static void discontigFeatureFinish(struct gff3File *g3f)$/;"	f	file:
discontigFeatureSort	lib/gff3.c	/^static struct gff3Ann *discontigFeatureSort(struct gff3Ann *g3a)$/;"	f	file:
discontigFeatureSortCmp	lib/gff3.c	/^static int discontigFeatureSortCmp(const void *p1, const void *p2)$/;"	f	file:
discontinFeatureArrayLink	lib/gff3.c	/^static struct gff3Ann *discontinFeatureArrayLink(int numAnns, struct gff3Ann *featAnns[])$/;"	f	file:
discontinFeatureCheck	lib/gff3.c	/^static void discontinFeatureCheck(struct gff3Ann *g3a)$/;"	f	file:
discontinFeatureFillArray	lib/gff3.c	/^static void discontinFeatureFillArray(struct gff3Ann *g3a, int numAnns, struct gff3Ann *featAnns[])$/;"	f	file:
disease	hg/inc/dbRIP.h	/^    char *disease;	\/* disease *\/$/;"	m	struct:dbRIP
diseaseSpotsPercent	hg/inc/cnpSharp.h	/^    float diseaseSpotsPercent;	\/* 0 to 1 *\/$/;"	m	struct:cnpSharp
dispDetailsRow	hg/lib/geneCheckWidget.c	/^static void dispDetailsRow(struct cart *cart, struct geneCheck *gc,$/;"	f	file:
displayABCdimensions	hg/lib/hui.c	/^static int displayABCdimensions(char *db,struct cart *cart, struct trackDb *parentTdb, struct slRef *subtrackRefList, membersForAll_t* membersForAll)$/;"	f	file:
displayComments	hg/lib/wikiTrack.c	/^void displayComments(struct wikiTrack *item)$/;"	f
displayID	hg/inc/kgProtAlias.h	/^    char *displayID;	\/* protein display ID *\/$/;"	m	struct:kgProtAlias
displayJalView	hg/lib/jalview.c	/^void displayJalView(char *inUrl, char *type, char *optional)$/;"	f
displayVal	hg/inc/gv.h	/^    char *displayVal;	\/* value to display if different from acc *\/$/;"	m	struct:gvLink
displayVal	hg/inc/landmark.h	/^    char *displayVal;	\/* how to display if different from acc *\/$/;"	m	struct:landmarkAttrLink
displayVal	hg/inc/omicia.h	/^    char *displayVal;	\/* value to display if different from acc *\/$/;"	m	struct:omiciaLink
displayVal	hg/inc/protVar.h	/^    char *displayVal;	\/* value to display if different from acc *\/$/;"	m	struct:protVarLink
distance	hg/inc/mapSts.h	/^    float distance;	\/* Distance from the RH map *\/$/;"	m	struct:mapSts
distance	hg/inc/rhMapInfo.h	/^    unsigned distance;	\/* Distance from the top of linkage group (cR) *\/$/;"	m	struct:rhMapInfo
distance	hg/inc/rhMapZfishInfo.h	/^    unsigned distance;	\/* Distance from the top of linkage group (cR) *\/$/;"	m	struct:rhMapZfishInfo
distance	hg/inc/stsInfo.h	/^    char *distance;	\/* Length of STS sequence *\/$/;"	m	struct:stsInfo
distance	hg/inc/stsInfo2.h	/^    char *distance;	\/* Length of STS sequence *\/$/;"	m	struct:stsInfo2
distance	hg/inc/stsInfoMouse.h	/^    char *distance;	\/* Length of STS sequence *\/$/;"	m	struct:stsInfoMouse
distance	hg/inc/stsInfoMouseNew.h	/^    char *distance;	\/* Length of STS sequence *\/$/;"	m	struct:stsInfoMouseNew
distance	hg/inc/stsInfoRat.h	/^    char *distance;	\/* Length of STS sequence *\/$/;"	m	struct:stsInfoRat
distance	lib/dgRange.c	/^   int distance;           \/* Distance - may be negative. *\/$/;"	m	struct:bfEdge	file:
distanceToLast	hg/inc/vntr.h	/^    int distanceToLast;	\/* Distance to previous microsat. repeat *\/$/;"	m	struct:vntr
distanceToNext	hg/inc/vntr.h	/^    int distanceToNext;	\/* Distance to next microsat. repeat *\/$/;"	m	struct:vntr
dividersFree	hg/lib/hui.c	/^static void dividersFree(dividers_t **dividers)$/;"	f	file:
dividersSettingGet	hg/lib/hui.c	/^static dividers_t *dividersSettingGet(struct trackDb *parentTdb)$/;"	f	file:
dividers_t	hg/lib/hui.c	/^} dividers_t;$/;"	t	typeref:struct:_dividers	file:
division	hg/inc/taxonNode.h	/^    unsigned division;	\/* ncbiDivision id (0=Bacteria, 2=Mammal, 5=Primate, 6=Rodent, 10=Vertabrate...) *\/$/;"	m	struct:taxonNode
divisionIfNeeded	hg/lib/hui.c	/^static boolean divisionIfNeeded(char **lastDivide,dividers_t *dividers,membership_t *membership)$/;"	f	file:
djangoName	inc/asParse.h	/^    char *djangoName;              \/* Django type name *\/$/;"	m	struct:asTypeInfo
dlAddAfter	lib/dlist.c	/^void dlAddAfter(struct dlNode *anchor, struct dlNode *newNode)$/;"	f
dlAddBefore	lib/dlist.c	/^void dlAddBefore(struct dlNode *anchor, struct dlNode *newNode)$/;"	f
dlAddHead	lib/dlist.c	/^void dlAddHead(struct dlList *list, struct dlNode *newNode)$/;"	f
dlAddTail	lib/dlist.c	/^void dlAddTail(struct dlList *list, struct dlNode *newNode)$/;"	f
dlAddValAfter	lib/dlist.c	/^struct dlNode *dlAddValAfter(struct dlNode *anchor, void *val)$/;"	f
dlAddValBefore	lib/dlist.c	/^struct dlNode *dlAddValBefore(struct dlNode *anchor, void *val)$/;"	f
dlAddValHead	lib/dlist.c	/^struct dlNode *dlAddValHead(struct dlList *list, void *val)$/;"	f
dlAddValTail	lib/dlist.c	/^struct dlNode *dlAddValTail(struct dlList *list, void *val)$/;"	f
dlCat	lib/dlist.c	/^void dlCat(struct dlList *a, struct dlList *b)$/;"	f
dlCount	lib/dlist.c	/^int dlCount(struct dlList *list)$/;"	f
dlDelete	lib/dlist.c	/^void dlDelete(struct dlNode **nodePtr)$/;"	f
dlEmpty	lib/dlist.c	/^boolean dlEmpty(struct dlList *list)$/;"	f
dlEnd	inc/dlist.h	29;"	d
dlGetAfterTail	lib/dlist.c	/^struct dlNode *dlGetAfterTail(struct dlList *list)$/;"	f
dlGetBeforeHead	lib/dlist.c	/^struct dlNode *dlGetBeforeHead(struct dlList *list)$/;"	f
dlInsertBetween	lib/dlist.c	/^void dlInsertBetween(struct dlNode *before, struct dlNode *after, struct dlNode *newNode)$/;"	f
dlIsEmpty	inc/dlist.h	112;"	d
dlList	inc/dlist.h	/^struct dlList$/;"	s
dlListFree	inc/dlist.h	57;"	d
dlListFreeAndVals	inc/dlist.h	62;"	d
dlListInit	lib/dlist.c	/^void dlListInit(struct dlList *dl)$/;"	f
dlListNew	inc/dlist.h	46;"	d
dlListReset	lib/dlist.c	/^void dlListReset(struct dlList *dl)$/;"	f
dlListToSlList	lib/dlist.c	/^void *dlListToSlList(struct dlList *dList)$/;"	f
dlNode	inc/dlist.h	/^struct dlNode$/;"	s
dlNodeCmp	lib/dlist.c	/^static int dlNodeCmp(const void *elem1, const void *elem2)$/;"	f	file:
dlPopHead	lib/dlist.c	/^struct dlNode *dlPopHead(struct dlList *list)$/;"	f
dlPopTail	lib/dlist.c	/^struct dlNode *dlPopTail(struct dlList *list)$/;"	f
dlRemove	lib/dlist.c	/^void dlRemove(struct dlNode *node)$/;"	f
dlRemoveHead	lib/dlist.c	/^void dlRemoveHead(struct dlList *list)$/;"	f
dlRemoveTail	lib/dlist.c	/^void dlRemoveTail(struct dlList *list)$/;"	f
dlSort	lib/dlist.c	/^void dlSort(struct dlList *list, $/;"	f
dlSorter	lib/dlist.c	/^struct dlSorter $/;"	s	file:
dlStart	inc/dlist.h	32;"	d
dlValInList	lib/dlist.c	/^struct dlNode *dlValInList(struct dlList *list, void *val)$/;"	f
dless	hg/inc/dless.h	/^struct dless$/;"	s
dlessCommaIn	hg/lib/dless.c	/^struct dless *dlessCommaIn(char **pS, struct dless *ret)$/;"	f
dlessCommaOut	hg/inc/dless.h	78;"	d
dlessFree	hg/lib/dless.c	/^void dlessFree(struct dless **pEl)$/;"	f
dlessFreeList	hg/lib/dless.c	/^void dlessFreeList(struct dless **pList)$/;"	f
dlessLoad	hg/lib/dless.c	/^struct dless *dlessLoad(char **row)$/;"	f
dlessLoadAll	hg/lib/dless.c	/^struct dless *dlessLoadAll(char *fileName) $/;"	f
dlessLoadAllByChar	hg/lib/dless.c	/^struct dless *dlessLoadAllByChar(char *fileName, char chopper) $/;"	f
dlessLoadAllByTab	hg/inc/dless.h	56;"	d
dlessOutput	hg/lib/dless.c	/^void dlessOutput(struct dless *el, FILE *f, char sep, char lastSep) $/;"	f
dlessStaticLoad	hg/lib/dless.c	/^void dlessStaticLoad(char **row, struct dless *ret)$/;"	f
dlessTabOut	hg/inc/dless.h	75;"	d
dna	hg/inc/dnaProbe.h	/^    char *dna;	\/* sequence of probe, {a,t,g,c} *\/$/;"	m	struct:dnaProbe
dna	hg/inc/qaSeq.h	/^    DNA *dna;             \/* Sequence base by base. *\/$/;"	m	struct:qaSeq
dna	inc/dnaseq.h	/^    DNA *dna;             \/* Sequence base by base. *\/$/;"	m	struct:dnaSeq
dna	inc/gfPcrLib.h	/^    char *dna;		\/* Fragment of sequence that gets amplified.$/;"	m	struct:gfPcrOutput
dna	inc/oldGff.h	/^    DNA *dna;$/;"	m	struct:gffGene
dna	inc/oldGff.h	/^    char *dna;$/;"	m	struct:gff
dna2rna	lib/rnautil.c	/^void dna2rna(char *s)$/;"	f
dnaBaseHistogram	lib/dnautil.c	/^void dnaBaseHistogram(DNA *dna, int dnaSize, int histogram[4])$/;"	f
dnaCase	inc/dnautil.h	/^enum dnaCase {dnaUpper,dnaLower,dnaMixed,};$/;"	g
dnaDiskSize	inc/itsa.h	/^    bits64 dnaDiskSize;	 \/* Size of DNA on disk with zero separators. Padded to 4 byte boundary  *\/$/;"	m	struct:itsaFileHeader
dnaDiskSize	inc/splix.h	/^    bits64 dnaDiskSize;	\/* Size of DNA on disk including zero separators and 8 byte padding *\/$/;"	m	struct:splixFileHeader
dnaDiskSize	inc/sufa.h	/^    bits64 dnaDiskSize;	\/* Size of DNA on disk with zero separators. Padded to 4 byte boundary  *\/$/;"	m	struct:sufaFileHeader
dnaDiskSize	inc/sufx.h	/^    bits64 dnaDiskSize;	 \/* Size of DNA on disk with zero separators. Padded to 4 byte boundary  *\/$/;"	m	struct:sufxFileHeader
dnaFilter	lib/dnautil.c	/^void dnaFilter(char *in, DNA *out)$/;"	f
dnaFilterToN	lib/dnautil.c	/^void dnaFilterToN(char *in, DNA *out)$/;"	f
dnaFilteredSize	lib/dnautil.c	/^long dnaFilteredSize(char *rawDna)$/;"	f
dnaLoad	lib/dnaLoad.c	/^struct dnaLoad$/;"	s	file:
dnaLoadAll	lib/dnaLoad.c	/^struct dnaSeq *dnaLoadAll(char *fileName)$/;"	f
dnaLoadClose	lib/dnaLoad.c	/^void dnaLoadClose(struct dnaLoad **pDl)$/;"	f
dnaLoadCurEnd	lib/dnaLoad.c	/^int dnaLoadCurEnd(struct dnaLoad *dl)$/;"	f
dnaLoadCurSize	lib/dnaLoad.c	/^int dnaLoadCurSize(struct dnaLoad *dl)$/;"	f
dnaLoadCurStart	lib/dnaLoad.c	/^int dnaLoadCurStart(struct dnaLoad *dl)$/;"	f
dnaLoadNext	lib/dnaLoad.c	/^struct dnaSeq *dnaLoadNext(struct dnaLoad *dl)$/;"	f
dnaLoadNextFromStack	lib/dnaLoad.c	/^static struct dnaSeq *dnaLoadNextFromStack(struct dnaLoad *dl)$/;"	f	file:
dnaLoadOpen	lib/dnaLoad.c	/^struct dnaLoad *dnaLoadOpen(char *fileName)$/;"	f
dnaLoadSingle	lib/dnaLoad.c	/^struct dnaSeq *dnaLoadSingle(char *fileName, int *retStart, int *retEnd, int *retParentSize)$/;"	f
dnaLoadStack	lib/dnaLoad.c	/^struct dnaLoadStack$/;"	s	file:
dnaLoadStackFree	lib/dnaLoad.c	/^void dnaLoadStackFree(struct dnaLoadStack **pDls)$/;"	f
dnaLoadStackFreeList	lib/dnaLoad.c	/^void dnaLoadStackFreeList(struct dnaLoadStack **pList)$/;"	f
dnaLoadStackNew	lib/dnaLoad.c	/^struct dnaLoadStack *dnaLoadStackNew(char *fileName)$/;"	f
dnaLoadStackOrSingle	lib/dnaLoad.c	/^static struct dnaSeq *dnaLoadStackOrSingle(struct dnaLoad *dl)$/;"	f	file:
dnaLower	inc/dnautil.h	/^enum dnaCase {dnaUpper,dnaLower,dnaMixed,};$/;"	e	enum:dnaCase
dnaMark0	lib/dnaMarkov.c	/^void dnaMark0(struct dnaSeq *seqList, double mark0[5], int slogMark0[5])$/;"	f
dnaMark1	lib/dnaMarkov.c	/^void dnaMark1(struct dnaSeq *seqList, double mark0[5], int slogMark0[5], $/;"	f
dnaMark2	lib/dnaMarkov.c	/^void dnaMark2(struct dnaSeq *seqList, double mark0[5], int slogMark0[5],$/;"	f
dnaMark2Deserialize	lib/dnaMarkov.c	/^void dnaMark2Deserialize(char *buf, double mark2[5][5][5])$/;"	f
dnaMark2Serialize	lib/dnaMarkov.c	/^char *dnaMark2Serialize(double mark2[5][5][5])$/;"	f
dnaMarkMakeLog2	lib/dnaMarkov.c	/^void dnaMarkMakeLog2(double mark2[5][5][5])$/;"	f
dnaMarkTriple	lib/dnaMarkov.c	/^void dnaMarkTriple(struct dnaSeq *seqList, $/;"	f
dnaMatchEntropy	lib/seqStats.c	/^double dnaMatchEntropy(DNA *query, DNA *target, int baseCount)$/;"	f
dnaMixed	inc/dnautil.h	/^enum dnaCase {dnaUpper,dnaLower,dnaMixed,};$/;"	e	enum:dnaCase
dnaMixedCaseFilter	lib/dnautil.c	/^void dnaMixedCaseFilter(char *in, DNA *out)$/;"	f
dnaMotif	inc/dnaMotif.h	/^struct dnaMotif$/;"	s
dnaMotifBestStrand	lib/dnaMotif.c	/^char dnaMotifBestStrand(struct dnaMotif *motif, DNA *dna)$/;"	f
dnaMotifBitScore	lib/dnaMotif.c	/^double dnaMotifBitScore(struct dnaMotif *motif, DNA *dna)$/;"	f
dnaMotifBitScoreWithMark0Bg	lib/dnaMotif.c	/^double dnaMotifBitScoreWithMark0Bg(struct dnaMotif *motif, DNA *dna, double mark0[5])$/;"	f
dnaMotifBitScoreWithMarkovBg	lib/dnaMotif.c	/^double dnaMotifBitScoreWithMarkovBg(struct dnaMotif *motif, DNA *dna, double mark2[5][5][5])$/;"	f
dnaMotifBitsOfInfo	lib/dnaMotif.c	/^double dnaMotifBitsOfInfo(struct dnaMotif *motif, int pos)$/;"	f
dnaMotifCommaIn	lib/dnaMotif.c	/^struct dnaMotif *dnaMotifCommaIn(char **pS, struct dnaMotif *ret)$/;"	f
dnaMotifCommaOut	inc/dnaMotif.h	42;"	d
dnaMotifDims	lib/dnaMotif.c	/^static void dnaMotifDims(struct dnaMotif *motif, double widthPerBase, double height, $/;"	f	file:
dnaMotifFree	lib/dnaMotif.c	/^void dnaMotifFree(struct dnaMotif **pEl)$/;"	f
dnaMotifFreeList	lib/dnaMotif.c	/^void dnaMotifFreeList(struct dnaMotif **pList)$/;"	f
dnaMotifIsScoreBased	lib/dnaMotif.c	/^boolean dnaMotifIsScoreBased(struct dnaMotif *motif)$/;"	f
dnaMotifLoad	hg/lib/dnaMotifSql.c	/^struct dnaMotif *dnaMotifLoad(char **row)$/;"	f
dnaMotifLoadAll	hg/lib/dnaMotifSql.c	/^struct dnaMotif *dnaMotifLoadAll(char *fileName) $/;"	f
dnaMotifLoadWhere	hg/lib/dnaMotifSql.c	/^struct dnaMotif *dnaMotifLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
dnaMotifMakeLog2	lib/dnaMotif.c	/^void dnaMotifMakeLog2(struct dnaMotif *motif)$/;"	f
dnaMotifMakeProbabalistic	lib/dnaMotif.c	/^void dnaMotifMakeProbabalistic(struct dnaMotif *motif)$/;"	f
dnaMotifNormalize	lib/dnaMotif.c	/^void dnaMotifNormalize(struct dnaMotif *motif)$/;"	f
dnaMotifOutput	lib/dnaMotif.c	/^void dnaMotifOutput(struct dnaMotif *el, FILE *f, char sep, char lastSep) $/;"	f
dnaMotifPrintProb	lib/dnaMotif.c	/^void dnaMotifPrintProb(struct dnaMotif *motif, FILE *f)$/;"	f
dnaMotifScoreToProb	lib/dnaMotif.c	/^void dnaMotifScoreToProb(struct dnaMotif *motif)$/;"	f
dnaMotifSequenceProb	lib/dnaMotif.c	/^float dnaMotifSequenceProb(struct dnaMotif *motif, DNA *dna)$/;"	f
dnaMotifSequenceProbLog	lib/dnaMotif.c	/^static float dnaMotifSequenceProbLog(struct dnaMotif *motif, DNA *dna)$/;"	f	file:
dnaMotifSequenceProbWithMark0	lib/dnaMotif.c	/^static float dnaMotifSequenceProbWithMark0(struct dnaMotif *motif, DNA *dna, double mark0[5])$/;"	f	file:
dnaMotifTabOut	inc/dnaMotif.h	39;"	d
dnaMotifToLogoPGM	lib/dnaMotif.c	/^void dnaMotifToLogoPGM($/;"	f
dnaMotifToLogoPng	lib/dnaMotif.c	/^void dnaMotifToLogoPng($/;"	f
dnaMotifToLogoPs	lib/dnaMotif.c	/^void dnaMotifToLogoPs(struct dnaMotif *motif, double widthPerBase, double height, char *fileName)$/;"	f
dnaMotifToLogoPs2	lib/dnaMotif.c	/^void dnaMotifToLogoPs2(struct dnaMotif *motif, double widthPerBase, double height, $/;"	f
dnaMotifToLogoPsW	lib/dnaMotif.c	/^void dnaMotifToLogoPsW(struct dnaMotif *motif, double widthPerBase, double width, double height, char *fileName)$/;"	f
dnaName	inc/oldGff.h	/^    char dnaName[128];$/;"	m	struct:gff
dnaOrAaFilter	lib/dnautil.c	/^void dnaOrAaFilter(char *in, char *out, char filter[256])$/;"	f
dnaOrAaFilteredSize	lib/dnautil.c	/^long dnaOrAaFilteredSize(char *raw, char filter[256])$/;"	f
dnaOrAaScoreMatch	lib/dnautil.c	/^int  dnaOrAaScoreMatch(char *a, char *b, int size, int matchScore, int mismatchScore, $/;"	f
dnaProbe	hg/inc/dnaProbe.h	/^struct dnaProbe$/;"	s
dnaProbeCommaIn	hg/lib/dnaProbe.c	/^struct dnaProbe *dnaProbeCommaIn(char **pS, struct dnaProbe *ret)$/;"	f
dnaProbeCommaOut	hg/inc/dnaProbe.h	87;"	d
dnaProbeFree	hg/lib/dnaProbe.c	/^void dnaProbeFree(struct dnaProbe **pEl)$/;"	f
dnaProbeFreeList	hg/lib/dnaProbe.c	/^void dnaProbeFreeList(struct dnaProbe **pList)$/;"	f
dnaProbeLoad	hg/lib/dnaProbe.c	/^struct dnaProbe *dnaProbeLoad(char **row)$/;"	f
dnaProbeLoadAll	hg/lib/dnaProbe.c	/^struct dnaProbe *dnaProbeLoadAll(char *fileName) $/;"	f
dnaProbeLoadByQuery	hg/lib/dnaProbe.c	/^struct dnaProbe *dnaProbeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
dnaProbeOutput	hg/lib/dnaProbe.c	/^void dnaProbeOutput(struct dnaProbe *el, FILE *f, char sep, char lastSep) $/;"	f
dnaProbeSaveToDb	hg/lib/dnaProbe.c	/^void dnaProbeSaveToDb(struct sqlConnection *conn, struct dnaProbe *el, char *tableName, int updateSize)$/;"	f
dnaProbeSaveToDbEscaped	hg/lib/dnaProbe.c	/^void dnaProbeSaveToDbEscaped(struct sqlConnection *conn, struct dnaProbe *el, char *tableName, int updateSize)$/;"	f
dnaProbeStaticLoad	hg/lib/dnaProbe.c	/^void dnaProbeStaticLoad(char **row, struct dnaProbe *ret)$/;"	f
dnaProbeTabOut	hg/inc/dnaProbe.h	84;"	d
dnaScore2	lib/dnautil.c	/^int dnaScore2(DNA a, DNA b)$/;"	f
dnaScoreMatch	lib/dnautil.c	/^int dnaScoreMatch(DNA *a, DNA *b, int size)$/;"	f
dnaSeq	inc/dnaseq.h	/^struct dnaSeq$/;"	s
dnaSeqCmpName	lib/dnaseq.c	/^int dnaSeqCmpName(const void *va, const void *vb)$/;"	f
dnaSeqFree	inc/dnaseq.h	38;"	d
dnaSeqFreeList	inc/dnaseq.h	42;"	d
dnaSeqHash	lib/dnaseq.c	/^struct hash *dnaSeqHash(struct dnaSeq *seqList)$/;"	f
dnaSize	inc/oldGff.h	/^    long dnaSize;$/;"	m	struct:gff
dnaSize	inc/oldGff.h	/^    long dnaSize;$/;"	m	struct:gffGene
dnaTranslateSome	lib/dnautil.c	/^void dnaTranslateSome(DNA *dna, char *out, int outSize)$/;"	f
dnaUpper	inc/dnautil.h	/^enum dnaCase {dnaUpper,dnaLower,dnaMixed,};$/;"	e	enum:dnaCase
dnaUtilOpen	lib/dnautil.c	/^void dnaUtilOpen()$/;"	f
doAllKeys	lib/intValTree.c	/^void doAllKeys(void *item, void *context)$/;"	f
doCompress	inc/bbiFile.h	/^    boolean doCompress;$/;"	m	struct:bbiSumOutStream
doDnaAlignment	hg/lib/coordConv.c	/^struct psl* doDnaAlignment(struct dnaSeq *seq, char *db, char *blatHost, $/;"	f
doExtraChecking	hg/lib/customFactory.c	/^static boolean doExtraChecking = FALSE;$/;"	v	file:
doGrepQuery	hg/lib/hgFind.c	/^static struct slName *doGrepQuery(char *indexFile, char *table, char *key,$/;"	f	file:
doIt	lib/rbTree.c	/^static void (*doIt)(void *item);$/;"	v	file:
doItem	lib/rbTree.c	/^    void (*doItem)(void *item, void *context);$/;"	m	struct:rTreeContext	file:
doQuery	hg/lib/hgFind.c	/^static boolean doQuery(char *db, struct hgFindSpec *hfs, char *xrefTerm, char *term,$/;"	f	file:
doSub	lib/subText.c	/^static void doSub(char *in, char *buf, struct subText *subList)$/;"	f	file:
doTranslate	hg/lib/mafGene.c	/^static aaSeq *doTranslate(struct dnaSeq *inSeq, unsigned offset, $/;"	f	file:
doUseTempFile	lib/cheapcgi.c	/^static boolean doUseTempFile = FALSE;$/;"	v	file:
domain	inc/htmlPage.h	/^    char *domain;		\/* The set of web domains this applies to. *\/$/;"	m	struct:htmlCookie
domainList	inc/hmmPfamParse.h	/^    struct hpfDomain *domainList;	\/* All places model occurs in query *\/$/;"	m	struct:hpfModel	typeref:struct:hpfModel::hpfDomain
dot	inc/vGfx.h	/^    void (*dot)(void *v, int x, int y, int colorIx);$/;"	m	struct:vGfx
dotForUser	lib/obscure.c	/^void dotForUser()$/;"	f
dotForUserInit	lib/obscure.c	/^void dotForUserInit(int dotMod)$/;"	f
dotsEnabled	lib/verbose.c	/^static boolean dotsEnabled = FALSE;         \/* is dot output enabled? *\/$/;"	v	file:
doubleBoxWhiskerCalc	lib/common.c	/^void doubleBoxWhiskerCalc(int count, double *array, double *retMin,$/;"	f
doubleCastOp	lib/rqlParse.c	/^static enum rqlOp doubleCastOp(enum rqlType oldType)$/;"	f	file:
doubleCmp	lib/common.c	/^static int doubleCmp(const void *va, const void *vb)$/;"	f	file:
doubleExp	lib/intExp.c	/^double doubleExp(char *text)$/;"	f
doubleMedian	lib/common.c	/^double doubleMedian(int count, double *array)$/;"	f
doubleSort	lib/common.c	/^void doubleSort(int count, double *array)$/;"	f
downPsl	hg/inc/coordConv.h	/^    struct psl *midPsl,*upPsl,*downPsl; \/** alignments for each of the dnaSeqs *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::
downPsl	hg/lib/coordConv.c	/^    struct psl *midPsl,*upPsl,*downPsl;$/;"	m	struct:possibleCoord	typeref:struct:possibleCoord::	file:
downSeq	hg/inc/coordConv.h	/^    struct dnaSeq *midSeq,*upSeq,*downSeq; \/** 3 in order from 5' to 3' *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::
downStart	hg/inc/coordConv.h	/^    unsigned midStart,upStart,downStart; \/** starting position of dnaSeqs in old chrom *\/$/;"	m	struct:coordConvRep
downstream_gene_variant	hg/inc/soterm.h	/^    downstream_gene_variant=1632,$/;"	e	enum:__anon11
dpBox	hg/inc/snoRNAs.h	/^    char *dpBox;	\/* D' box feature *\/$/;"	m	struct:snoRNAs
dpBox	hg/lib/snoRNAs.h	/^    char *dpBox;	\/* D' box feature *\/$/;"	m	struct:snoRNAs
dprime	hg/inc/hapmapLd.h	/^    char *dprime;	\/* Encoded lists of D' values *\/$/;"	m	struct:hapmapLd
dprime	hg/inc/ld.h	/^    char *dprime;	\/* Encoded lists of D' values *\/$/;"	m	struct:ld
dprime	hg/inc/ld2.h	/^    char *dprime;	\/* Encoded list (length=ldCount) of D' values *\/$/;"	m	struct:ld2
drawAfterOnOff	lib/mgPolygon.c	/^static void drawAfterOnOff(struct memGfx *mg, Color color, int bpr, int width, $/;"	f	file:
drawExonAt	hg/lib/altGraphX.c	/^static void drawExonAt(struct spliceEdge *se, int heightPer, int regionStart, int regionEnd,$/;"	f	file:
drawPoly	inc/vGfx.h	/^    void (*drawPoly)(void *v, struct gfxPoly *poly, Color color, $/;"	m	struct:vGfx
dropNotBest	hg/lib/coordConv.c	/^void dropNotBest(struct psl **pslList)$/;"	f
ds	lib/mafScore.c	/^static gap_scores_t ds;$/;"	v	file:
dtdAttribute	inc/dtdParse.h	/^struct dtdAttribute$/;"	s
dtdElChild	inc/dtdParse.h	/^struct dtdElChild$/;"	s
dtdElement	inc/dtdParse.h	/^struct dtdElement$/;"	s
dtdElementDump	lib/dtdParse.c	/^void dtdElementDump(struct dtdElement *el, FILE *f)$/;"	f
dtdParse	lib/dtdParse.c	/^void dtdParse(char *fileName, char *prefix, char *textField,$/;"	f
dtdxTag	lib/dtdParse.c	/^static char *dtdxTag(struct lineFile *lf, struct hash *entityHash,$/;"	f	file:
dummy	hg/inc/rnaHybridization.h	/^    unsigned dummy;	\/* dummy field to align with bed 6 structure *\/$/;"	m	struct:rnaHybridization
dump2L	lib/axtAffine.c	/^void dump2L(struct cell2L* c)$/;"	f
dumpBunList	jkOwnLib/gfBlatLib.c	/^void dumpBunList(struct ssBundle *bunList)$/;"	f
dumpBuns	jkOwnLib/supStitch.c	/^void dumpBuns(struct ssBundle *bunList)$/;"	f
dumpClump	jkOwnLib/genoFind.c	/^static void dumpClump(struct gfClump *clump, FILE *f)$/;"	f	file:
dumpClumpList	jkOwnLib/genoFind.c	/^static void dumpClumpList(struct gfClump *clumpList, FILE *f)$/;"	f	file:
dumpCookieList	lib/cheapcgi.c	/^void dumpCookieList()$/;"	f
dumpDimension	hg/lib/hui.c	/^static void dumpDimension(members_t *dimension, char *name, FILE *f)$/;"	f	file:
dumpFf	jkOwnLib/supStitch.c	/^void dumpFf(struct ffAli *left, DNA *needle, DNA *hay)$/;"	f
dumpFile	lib/rbTree.c	/^static FILE *dumpFile;  \/* Output file *\/$/;"	v	file:
dumpFlagStatus	hg/lib/hdb.c	/^static void dumpFlagStatus(struct trackDb *tdbList, char *tableName, char *label)$/;"	f	file:
dumpGg	hg/lib/ggDump.c	/^void dumpGg(struct geneGraph *gg)$/;"	f
dumpGgAliInfo	hg/lib/ggDump.c	/^void dumpGgAliInfo(struct ggAliInfo *da, int start, int end)$/;"	f
dumpIt	lib/rbTree.c	/^static void (*dumpIt)(void *item, FILE *f);  \/* Item dumper. *\/$/;"	v	file:
dumpLevel	lib/rbTree.c	/^static int dumpLevel;	\/* Indentation level. *\/$/;"	v	file:
dumpMB	lib/mime.c	/^static void dumpMB(struct mimeBuf *b)$/;"	f	file:
dumpMc	hg/lib/ggDump.c	/^void dumpMc(struct ggMrnaCluster *mc)$/;"	f
dumpNearCrossover	jkOwnLib/supStitch.c	/^void dumpNearCrossover(char *what, DNA *n, DNA *h, int size)$/;"	f
dumpRange	jkOwnLib/gfBlatLib.c	/^void dumpRange(struct gfRange *r, FILE *f)$/;"	f
dumpRangeList	hg/lib/liftOver.c	/^static void dumpRangeList(struct liftRange *rangeList, FILE *f)$/;"	f	file:
dumpRangeList	jkOwnLib/gfBlatLib.c	/^void dumpRangeList(struct gfRange *rangeList, FILE *f)$/;"	f
dumpStack	lib/osunix.c	/^void dumpStack(char *format, ...)$/;"	f
dumpStackOnSignal	lib/cheapcgi.c	/^static boolean dumpStackOnSignal = FALSE;  \/\/ should a stack dump be generated?$/;"	v	file:
dupPercent	hg/inc/cnpSharp.h	/^    float dupPercent;	\/* 0 to 1 *\/$/;"	m	struct:cnpSharp
dupeSegmentList	lib/oldGff.c	/^static struct gffSegment *dupeSegmentList(struct gffSegment *oldList,$/;"	f	file:
dv	hg/inc/dv.h	/^struct dv$/;"	s
dvBed	hg/inc/dvBed.h	/^struct dvBed$/;"	s
dvBedCommaIn	hg/lib/dvBed.c	/^struct dvBed *dvBedCommaIn(char **pS, struct dvBed *ret)$/;"	f
dvBedCommaOut	hg/inc/dvBed.h	58;"	d
dvBedFree	hg/lib/dvBed.c	/^void dvBedFree(struct dvBed **pEl)$/;"	f
dvBedFreeList	hg/lib/dvBed.c	/^void dvBedFreeList(struct dvBed **pList)$/;"	f
dvBedLoad	hg/lib/dvBed.c	/^struct dvBed *dvBedLoad(char **row)$/;"	f
dvBedLoadAll	hg/lib/dvBed.c	/^struct dvBed *dvBedLoadAll(char *fileName) $/;"	f
dvBedLoadAllByChar	hg/lib/dvBed.c	/^struct dvBed *dvBedLoadAllByChar(char *fileName, char chopper) $/;"	f
dvBedLoadAllByTab	hg/inc/dvBed.h	36;"	d
dvBedOutput	hg/lib/dvBed.c	/^void dvBedOutput(struct dvBed *el, FILE *f, char sep, char lastSep) $/;"	f
dvBedStaticLoad	hg/lib/dvBed.c	/^void dvBedStaticLoad(char **row, struct dvBed *ret)$/;"	f
dvBedTabOut	hg/inc/dvBed.h	55;"	d
dvCommaIn	hg/lib/dv.c	/^struct dv *dvCommaIn(char **pS, struct dv *ret)$/;"	f
dvCommaOut	hg/inc/dv.h	61;"	d
dvFree	hg/lib/dv.c	/^void dvFree(struct dv **pEl)$/;"	f
dvFreeList	hg/lib/dv.c	/^void dvFreeList(struct dv **pList)$/;"	f
dvLoad	hg/lib/dv.c	/^struct dv *dvLoad(char **row)$/;"	f
dvLoadAll	hg/lib/dv.c	/^struct dv *dvLoadAll(char *fileName) $/;"	f
dvLoadAllByChar	hg/lib/dv.c	/^struct dv *dvLoadAllByChar(char *fileName, char chopper) $/;"	f
dvLoadAllByTab	hg/inc/dv.h	39;"	d
dvOutput	hg/lib/dv.c	/^void dvOutput(struct dv *el, FILE *f, char sep, char lastSep) $/;"	f
dvStaticLoad	hg/lib/dv.c	/^void dvStaticLoad(char **row, struct dv *ret)$/;"	f
dvTabOut	hg/inc/dv.h	58;"	d
dvXref2	hg/inc/dvXref2.h	/^struct dvXref2$/;"	s
dvXref2CommaIn	hg/lib/dvXref2.c	/^struct dvXref2 *dvXref2CommaIn(char **pS, struct dvXref2 *ret)$/;"	f
dvXref2CommaOut	hg/inc/dvXref2.h	57;"	d
dvXref2Free	hg/lib/dvXref2.c	/^void dvXref2Free(struct dvXref2 **pEl)$/;"	f
dvXref2FreeList	hg/lib/dvXref2.c	/^void dvXref2FreeList(struct dvXref2 **pList)$/;"	f
dvXref2Load	hg/lib/dvXref2.c	/^struct dvXref2 *dvXref2Load(char **row)$/;"	f
dvXref2LoadAll	hg/lib/dvXref2.c	/^struct dvXref2 *dvXref2LoadAll(char *fileName) $/;"	f
dvXref2LoadAllByChar	hg/lib/dvXref2.c	/^struct dvXref2 *dvXref2LoadAllByChar(char *fileName, char chopper) $/;"	f
dvXref2LoadAllByTab	hg/inc/dvXref2.h	35;"	d
dvXref2Output	hg/lib/dvXref2.c	/^void dvXref2Output(struct dvXref2 *el, FILE *f, char sep, char lastSep) $/;"	f
dvXref2StaticLoad	hg/lib/dvXref2.c	/^void dvXref2StaticLoad(char **row, struct dvXref2 *ret)$/;"	f
dvXref2TabOut	hg/inc/dvXref2.h	54;"	d
dy	hg/lib/hgBam.c	/^    struct dyString *dy;	\/* Dynamic temporary string *\/$/;"	m	struct:bamToSamHelper	typeref:struct:bamToSamHelper::dyString	file:
dy	hg/lib/hgMaf.c	/^    struct dyString *dy;	\/* Associated alignment for this organism. *\/$/;"	m	struct:oneOrg	typeref:struct:oneOrg::dyString	file:
dyAddAllScoreFilters	hg/lib/hui.c	/^struct dyString *dyAddAllScoreFilters(struct cart *cart, struct trackDb *tdb, struct dyString *extraWhere,boolean *and)$/;"	f
dyAddFilterAsDouble	hg/lib/hui.c	/^struct dyString *dyAddFilterAsDouble(struct cart *cart, struct trackDb *tdb,$/;"	f
dyAddFilterAsInt	hg/lib/hui.c	/^struct dyString *dyAddFilterAsInt(struct cart *cart, struct trackDb *tdb,$/;"	f
dyAddFilterByClause	hg/lib/hui.c	/^struct dyString *dyAddFilterByClause(struct cart *cart, struct trackDb *tdb,$/;"	f
dyGt	lib/annoStreamVcf.c	/^    struct dyString *dyGt;		\/\/ Scratch space for squashing genotype columns$/;"	m	struct:annoStreamVcf	typeref:struct:annoStreamVcf::dyString	file:
dyString	inc/dystring.h	/^struct dyString$/;"	s
dyStringAppend	lib/dystring.c	/^void dyStringAppend(struct dyString *ds, char *string)$/;"	f
dyStringAppendC	lib/dystring.c	/^char dyStringAppendC(struct dyString *ds, char c)$/;"	f
dyStringAppendEscapeQuotes	lib/dystring.c	/^void dyStringAppendEscapeQuotes(struct dyString *dy, char *string,$/;"	f
dyStringAppendMultiC	lib/dystring.c	/^void dyStringAppendMultiC(struct dyString *ds, char c, int n)$/;"	f
dyStringAppendN	lib/dystring.c	/^void dyStringAppendN(struct dyString *ds, char *string, int stringSize)$/;"	f
dyStringBumpBufSize	lib/dystring.c	/^void dyStringBumpBufSize(struct dyString *ds, int size)$/;"	f
dyStringCannibalize	lib/dystring.c	/^char *dyStringCannibalize(struct dyString **pDy)$/;"	f
dyStringClear	inc/dystring.h	69;"	d
dyStringContents	inc/dystring.h	84;"	d
dyStringCreate	lib/dystring.c	/^struct dyString *dyStringCreate(char *format, ...)$/;"	f
dyStringExpandBuf	lib/dystring.c	/^static void dyStringExpandBuf(struct dyString *ds, int newSize)$/;"	f	file:
dyStringFree	inc/dystring.h	29;"	d
dyStringFreeList	inc/dystring.h	34;"	d
dyStringLen	inc/dystring.h	87;"	d
dyStringNew	inc/dystring.h	24;"	d
dyStringPrintf	lib/dystring.c	/^void dyStringPrintf(struct dyString *ds, char *format, ...)$/;"	f
dyStringQuoteString	lib/dystring.c	/^void dyStringQuoteString(struct dyString *dy, char quotChar, char *text)$/;"	f
dyStringResize	lib/dystring.c	/^void dyStringResize(struct dyString *ds, int newSize)$/;"	f
dyStringSub	lib/dystring.c	/^struct dyString * dyStringSub(char *orig, char *in, char *out)$/;"	f
dyStringVaPrintf	lib/dystring.c	/^void dyStringVaPrintf(struct dyString *ds, char *format, va_list args)$/;"	f
dyStringWriteOne	inc/dystring.h	52;"	d
dynChopStringWhite	lib/gff3.c	/^static char **dynChopStringWhite(struct gff3File *g3f, char *str, int minWords, int maxWords, int *numWordsRet, char *desc)$/;"	f	file:
eCfgType	hg/inc/trackDb.h	/^} eCfgType;$/;"	t	typeref:enum:_eCfgType
eVal	hg/inc/knownToSuper.h	/^    float eVal;	\/* E value of superfamily assignment *\/$/;"	m	struct:knownToSuper
eVal	inc/blastParse.h	/^    double eVal;                        \/* Expected number of alignments in database. *\/$/;"	m	struct:blastBlock
eVal	inc/hmmPfamParse.h	/^    double eVal;	\/* Expectation value. *\/$/;"	m	struct:hpfDomain
eVal	inc/hmmPfamParse.h	/^    double eVal;	\/* Expectation value. *\/$/;"	m	struct:hpfModel
eValue	hg/inc/blastTab.h	/^    double eValue;	\/* Expectation value *\/$/;"	m	struct:blastTab
earlyAbortHandler	lib/htmshell.c	/^static void earlyAbortHandler()$/;"	f	file:
earlyWarningHandler	lib/htmshell.c	/^static void earlyWarningHandler(char *format, va_list args)$/;"	f	file:
easyGene	hg/inc/easyGene.h	/^struct easyGene$/;"	s
easyGeneCommaIn	hg/lib/easyGene.c	/^struct easyGene *easyGeneCommaIn(char **pS, struct easyGene *ret)$/;"	f
easyGeneCommaOut	hg/inc/easyGene.h	69;"	d
easyGeneFree	hg/lib/easyGene.c	/^void easyGeneFree(struct easyGene **pEl)$/;"	f
easyGeneFreeList	hg/lib/easyGene.c	/^void easyGeneFreeList(struct easyGene **pList)$/;"	f
easyGeneLoad	hg/lib/easyGene.c	/^struct easyGene *easyGeneLoad(char **row)$/;"	f
easyGeneLoadAll	hg/lib/easyGene.c	/^struct easyGene *easyGeneLoadAll(char *fileName) $/;"	f
easyGeneLoadAllByChar	hg/lib/easyGene.c	/^struct easyGene *easyGeneLoadAllByChar(char *fileName, char chopper) $/;"	f
easyGeneLoadAllByTab	hg/inc/easyGene.h	47;"	d
easyGeneOutput	hg/lib/easyGene.c	/^void easyGeneOutput(struct easyGene *el, FILE *f, char sep, char lastSep) $/;"	f
easyGeneStaticLoad	hg/lib/easyGene.c	/^void easyGeneStaticLoad(char **row, struct easyGene *ret)$/;"	f
easyGeneTabOut	hg/inc/easyGene.h	66;"	d
eatComment	lib/dtdParse.c	/^static char *eatComment(struct lineFile *lf, char *line)$/;"	f	file:
eatExcessDotDotInPath	lib/osunix.c	/^static void eatExcessDotDotInPath(char *path)$/;"	f	file:
eatLf	lib/xa.c	/^static void eatLf(FILE *f)$/;"	f	file:
eatMatchingTok	lib/rqlParse.c	/^static boolean eatMatchingTok(struct tokenizer *tkz, char *s)$/;"	f	file:
eatSlashSlashInPath	lib/osunix.c	/^static void eatSlashSlashInPath(char *path)$/;"	f	file:
eatThroughLf	lib/xa.c	/^static void eatThroughLf(FILE *f)$/;"	f	file:
ebNo	inc/common.h	/^    ebNo=-1                   \/\/ already set to FALSE$/;"	e	enum:enumBool
ebYes	inc/common.h	/^    ebYes=1,                  \/\/ already set to TRUE$/;"	e	enum:enumBool
ec	hg/inc/ecAttribute.h	/^    char *ec;	\/* ec number (1.1.1.1) *\/$/;"	m	struct:ecAttribute
ec	hg/inc/ecCode.h	/^    char *ec;	\/* ec number (1.1.1.1) *\/$/;"	m	struct:ecCode
ec	hg/inc/minGeneInfo.h	/^    char *ec;	\/* ec number  *\/$/;"	m	struct:minGeneInfo
ecAttribute	hg/inc/ecAttribute.h	/^struct ecAttribute$/;"	s
ecAttributeCode	hg/inc/ecAttributeCode.h	/^struct ecAttributeCode$/;"	s
ecAttributeCodeCommaIn	hg/lib/ecAttributeCode.c	/^struct ecAttributeCode *ecAttributeCodeCommaIn(char **pS, struct ecAttributeCode *ret)$/;"	f
ecAttributeCodeCommaOut	hg/inc/ecAttributeCode.h	56;"	d
ecAttributeCodeFree	hg/lib/ecAttributeCode.c	/^void ecAttributeCodeFree(struct ecAttributeCode **pEl)$/;"	f
ecAttributeCodeFreeList	hg/lib/ecAttributeCode.c	/^void ecAttributeCodeFreeList(struct ecAttributeCode **pList)$/;"	f
ecAttributeCodeLoad	hg/lib/ecAttributeCode.c	/^struct ecAttributeCode *ecAttributeCodeLoad(char **row)$/;"	f
ecAttributeCodeLoadAll	hg/lib/ecAttributeCode.c	/^struct ecAttributeCode *ecAttributeCodeLoadAll(char *fileName) $/;"	f
ecAttributeCodeLoadAllByChar	hg/lib/ecAttributeCode.c	/^struct ecAttributeCode *ecAttributeCodeLoadAllByChar(char *fileName, char chopper) $/;"	f
ecAttributeCodeLoadAllByTab	hg/inc/ecAttributeCode.h	34;"	d
ecAttributeCodeOutput	hg/lib/ecAttributeCode.c	/^void ecAttributeCodeOutput(struct ecAttributeCode *el, FILE *f, char sep, char lastSep) $/;"	f
ecAttributeCodeStaticLoad	hg/lib/ecAttributeCode.c	/^void ecAttributeCodeStaticLoad(char **row, struct ecAttributeCode *ret)$/;"	f
ecAttributeCodeTabOut	hg/inc/ecAttributeCode.h	53;"	d
ecAttributeCommaIn	hg/lib/ecAttribute.c	/^struct ecAttribute *ecAttributeCommaIn(char **pS, struct ecAttribute *ret)$/;"	f
ecAttributeCommaOut	hg/inc/ecAttribute.h	62;"	d
ecAttributeFree	hg/lib/ecAttribute.c	/^void ecAttributeFree(struct ecAttribute **pEl)$/;"	f
ecAttributeFreeList	hg/lib/ecAttribute.c	/^void ecAttributeFreeList(struct ecAttribute **pList)$/;"	f
ecAttributeLoad	hg/lib/ecAttribute.c	/^struct ecAttribute *ecAttributeLoad(char **row)$/;"	f
ecAttributeLoadAll	hg/lib/ecAttribute.c	/^struct ecAttribute *ecAttributeLoadAll(char *fileName) $/;"	f
ecAttributeLoadAllByChar	hg/lib/ecAttribute.c	/^struct ecAttribute *ecAttributeLoadAllByChar(char *fileName, char chopper) $/;"	f
ecAttributeLoadAllByTab	hg/inc/ecAttribute.h	40;"	d
ecAttributeOutput	hg/lib/ecAttribute.c	/^void ecAttributeOutput(struct ecAttribute *el, FILE *f, char sep, char lastSep) $/;"	f
ecAttributeStaticLoad	hg/lib/ecAttribute.c	/^void ecAttributeStaticLoad(char **row, struct ecAttribute *ret)$/;"	f
ecAttributeTabOut	hg/inc/ecAttribute.h	59;"	d
ecCode	hg/inc/ecCode.h	/^struct ecCode$/;"	s
ecCodeCommaIn	hg/lib/ecCode.c	/^struct ecCode *ecCodeCommaIn(char **pS, struct ecCode *ret)$/;"	f
ecCodeCommaOut	hg/inc/ecCode.h	60;"	d
ecCodeFree	hg/lib/ecCode.c	/^void ecCodeFree(struct ecCode **pEl)$/;"	f
ecCodeFreeList	hg/lib/ecCode.c	/^void ecCodeFreeList(struct ecCode **pList)$/;"	f
ecCodeLoad	hg/lib/ecCode.c	/^struct ecCode *ecCodeLoad(char **row)$/;"	f
ecCodeLoadAll	hg/lib/ecCode.c	/^struct ecCode *ecCodeLoadAll(char *fileName) $/;"	f
ecCodeLoadAllByChar	hg/lib/ecCode.c	/^struct ecCode *ecCodeLoadAllByChar(char *fileName, char chopper) $/;"	f
ecCodeLoadAllByTab	hg/inc/ecCode.h	38;"	d
ecCodeOutput	hg/lib/ecCode.c	/^void ecCodeOutput(struct ecCode *el, FILE *f, char sep, char lastSep) $/;"	f
ecCodeStaticLoad	hg/lib/ecCode.c	/^void ecCodeStaticLoad(char **row, struct ecCode *ret)$/;"	f
ecCodeTabOut	hg/inc/ecCode.h	57;"	d
edge	hg/inc/stanMad.h	/^    float edge;	\/* unnknown *\/$/;"	m	struct:stanMad
edge	inc/diGraph.h	/^    struct dgEdge *edge;        \/* Reference to edge. *\/$/;"	m	struct:dgEdgeRef	typeref:struct:dgEdgeRef::dgEdge
edgeCount	hg/inc/altGraph.h	/^    unsigned edgeCount;	\/* Number of edges in graph *\/$/;"	m	struct:altGraph
edgeCount	hg/inc/altGraphX.h	/^    unsigned edgeCount;	\/* Number of edges in graph. *\/$/;"	m	struct:altGraphX
edgeCount	hg/inc/ggDbRep.h	/^    unsigned edgeCount;	\/* Number of edges in graph *\/$/;"	m	struct:altGraph
edgeCount	hg/inc/txGraph.h	/^    unsigned edgeCount;	\/* Number of edges in graph. *\/$/;"	m	struct:txGraph
edgeCount	jkOwnLib/supStitch.c	/^    int edgeCount;              \/* Number of edges. *\/$/;"	m	struct:ssGraph	file:
edgeCount	lib/dgRange.c	/^    int edgeCount;               \/* Number of edges. *\/$/;"	m	struct:bfGraph	file:
edgeEnds	hg/inc/altGraph.h	/^    int *edgeEnds;	\/* Array with end vertex of edges. *\/$/;"	m	struct:altGraph
edgeEnds	hg/inc/altGraphX.h	/^    int *edgeEnds;	\/* Array with end vertex of edges. *\/$/;"	m	struct:altGraphX
edgeEnds	hg/inc/ggDbRep.h	/^    unsigned *edgeEnds;	\/* Array with end vertex of edges *\/$/;"	m	struct:altGraph
edgeList	hg/inc/txGraph.h	/^    struct txEdge *edgeList;	\/* Edges (introns and exons) in graph. *\/$/;"	m	struct:txGraph	typeref:struct:txGraph::txEdge
edgeList	inc/diGraph.h	/^    struct dlList *edgeList;$/;"	m	struct:diGraph	typeref:struct:diGraph::dlList
edgeMatrix	hg/inc/geneGraph.h	/^    bool **edgeMatrix;	                \/* Adjacency matrix for directed graph. *\/$/;"	m	struct:geneGraph
edgeOnList	inc/diGraph.h	/^    struct dlNode *edgeOnList;  \/* Associated edge. *\/$/;"	m	struct:dgConnection	typeref:struct:dgConnection::dlNode
edgePopularityCmp	hg/lib/altGraphX.c	/^int edgePopularityCmp(const void *va, const void *vb)$/;"	f
edgeStarts	hg/inc/altGraph.h	/^    int *edgeStarts;	\/* Array with start vertex of edges *\/$/;"	m	struct:altGraph
edgeStarts	hg/inc/altGraphX.h	/^    int *edgeStarts;	\/* Array with start vertex of edges. *\/$/;"	m	struct:altGraphX
edgeStarts	hg/inc/ggDbRep.h	/^    unsigned *edgeStarts;	\/* Array with start vertex of edges *\/$/;"	m	struct:altGraph
edgeTypes	hg/inc/altGraphX.h	/^    int *edgeTypes;	\/* Type for each edge, ggExon, ggIntron,$/;"	m	struct:altGraphX
edges	inc/phyloTree.h	/^    struct phyloTree **edges;$/;"	m	struct:phyloTree	typeref:struct:phyloTree::phyloTree
edges	jkOwnLib/supStitch.c	/^    struct ssEdge *edges;       \/* Array of edges. *\/$/;"	m	struct:ssGraph	typeref:struct:ssGraph::ssEdge	file:
edges	lib/dgRange.c	/^    struct bfEdge *edges;        \/* Array of edges. *\/$/;"	m	struct:bfGraph	typeref:struct:bfGraph::bfEdge	file:
effect	hg/inc/bgiGeneSnp.h	/^    char *effect;	\/* Changes to codon or splice site (if applicable) *\/$/;"	m	struct:bgiGeneSnp
el	inc/dtdParse.h	/^   struct dtdElement *el;	\/* Element definition. *\/$/;"	m	struct:dtdElChild	typeref:struct:dtdElChild::dtdElement
elBuf	lib/colHash.h	/^    struct colHashEl elBuf[256];	\/* Buffer of elements. *\/$/;"	m	struct:colHash	typeref:struct:colHash::colHashEl
elCount	inc/bbiFile.h	/^    int elCount;$/;"	m	struct:bbiSumOutStream
elCount	inc/hash.h	/^    int elCount;		\/* Count of elements. *\/$/;"	m	struct:hash
elFromRec	lib/fof.c	/^static void elFromRec(struct fof *fof, struct fofRecord *rec, struct fofBatch *el)$/;"	f	file:
elName	inc/xap.h	/^   char *elName;	\/* Name of tag. *\/$/;"	m	struct:xapStack
emailVerified	hg/lib/wikiTrack.c	/^boolean emailVerified(boolean showMessage)$/;"	f
emblLineGroup	lib/emblParse.c	/^boolean emblLineGroup(struct lineFile *lf, char type[16], struct dyString *val)$/;"	f
emblOpen	lib/emblParse.c	/^struct lineFile *emblOpen(char *fileName, char type[256])$/;"	f
emblRecord	lib/emblParse.c	/^struct hash *emblRecord(struct lineFile *lf)$/;"	f
emblcode	hg/inc/taxonNode.h	/^    char *emblcode;	\/* locus-name prefix; not unique *\/$/;"	m	struct:taxonNode
emitLetter	inc/pairHmm.h	/^    char emitLetter;		\/* Single letter representing state. *\/$/;"	m	struct:phmmState
emptyCartDb	hg/lib/cart.c	/^static struct cartDb *emptyCartDb()$/;"	f	file:
emptyForNull	lib/common.c	/^char *emptyForNull(char *s)$/;"	f
emptySize	hg/inc/dbRIP.h	/^    int emptySize;	\/* empty size *\/$/;"	m	struct:dbRIP
emptyStr	lib/common.c	/^static char *emptyStr = "";$/;"	v	file:
encodePeakCfgUi	hg/lib/hui.c	/^void encodePeakCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed)$/;"	f
encodePeakFactory	hg/lib/customFactory.c	/^static struct customFactory encodePeakFactory =$/;"	v	typeref:struct:customFactory	file:
encodePeakFinish	hg/lib/customFactory.c	/^static struct customTrack *encodePeakFinish(struct customTrack *track, struct encodePeak *peakList, enum encodePeakType pt)$/;"	f	file:
encodePeakHasCfgUi	hg/lib/hui.c	/^boolean encodePeakHasCfgUi(struct trackDb *tdb)$/;"	f
encodePeakLoader	hg/lib/customFactory.c	/^static struct customTrack *encodePeakLoader(struct customFactory *fac,$/;"	f	file:
encodePeakLoaderPipe	hg/lib/customFactory.c	/^static struct pipeline *encodePeakLoaderPipe(struct customTrack *track)$/;"	f	file:
encodePeakRecognizer	hg/lib/customFactory.c	/^static boolean encodePeakRecognizer(struct customFactory *fac,$/;"	f	file:
encodeRestrictionDate	hg/lib/hui.c	/^char *encodeRestrictionDate(char *db,struct trackDb *trackDb,boolean excludePast)$/;"	f
encodeRestrictionDateDisplay	hg/inc/hui.h	44;"	d
encodedHgSessionReturnUrl	hg/lib/wikiLink.c	/^static char *encodedHgSessionReturnUrl(int hgsid)$/;"	f	file:
encodedReturnUrl	hg/lib/wikiTrack.c	/^char *encodedReturnUrl(char *(*hgUrl)())$/;"	f
end	hg/inc/altGraphX.h	/^    int end;                    \/* End. *\/$/;"	m	struct:spliceEdge
end	hg/inc/atomDb.h	/^    unsigned end;	\/* chrom end *\/$/;"	m	struct:atom
end	hg/inc/cdsEvidence.h	/^    int end;	\/* CDS end, non-inclusive *\/$/;"	m	struct:cdsEvidence
end	hg/inc/cdsOrtho.h	/^    int end;	\/* CDS end within transcript *\/$/;"	m	struct:cdsOrtho
end	hg/inc/cdsPick.h	/^    int end;	\/* CDS end, non-inclusive *\/$/;"	m	struct:cdsPick
end	hg/inc/dnaProbe.h	/^    int end;	\/* end position in chromosome *\/$/;"	m	struct:dnaProbe
end	hg/inc/featureBits.h	/^    int start, end;	\/* Start\/end half open zero based. *\/$/;"	m	struct:featureBits
end	hg/inc/genbank.h	/^    int end;                      \/* end, in [0..n) coords *\/$/;"	m	struct:genbankCds
end	hg/inc/genbankBlackList.h	/^int end;       \/* ending value to range *\/$/;"	m	struct:blackListRange
end	hg/inc/geneGraph.h	/^    int start,end;	       \/* Bounds of evidence in chrom coordinates. *\/$/;"	m	struct:ggEvidence
end	hg/inc/glDbRep.h	/^    unsigned end;	\/* End position in golden path *\/$/;"	m	struct:gl
end	hg/inc/knownToSuper.h	/^    int end;	\/* End (noninclusive) of superfamily domain *\/$/;"	m	struct:knownToSuper
end	hg/inc/protFeat.h	/^    int end;	\/* End of feature (non-inclusive) *\/$/;"	m	struct:protFeat
end	hg/inc/spDb.h	/^    int end;	\/* End coordinate (non-inclusive) *\/$/;"	m	struct:spFeature
end	hg/inc/txGraph.h	/^    int end;	\/* End position *\/$/;"	m	struct:txEvidence
end	hg/lib/chromGraph.c	/^    struct chromGraph *end;	\/* First element not in this chrom *\/$/;"	m	struct:cInfo	typeref:struct:cInfo::chromGraph	file:
end	hg/lib/liftOver.c	/^     int end;		\/* End, non-inclusive. *\/$/;"	m	struct:liftRange	file:
end	hg/lib/mafGene.c	/^    int start, end;$/;"	m	struct:speciesInfo	file:
end	hg/lib/wiggleUtils.c	/^    unsigned end;	\/* end chrom position *\/$/;"	m	struct:wigStatsAcc	file:
end	inc/annoRow.h	/^    uint end;$/;"	m	struct:annoRow
end	inc/bbiFile.h	/^    bits32 start, end;			\/* Position in chromosome, half open. *\/$/;"	m	struct:bbiInterval
end	inc/bbiFile.h	/^    bits32 start,end;		\/* Range of chromosome covered. *\/$/;"	m	struct:bbiSummary
end	inc/bbiFile.h	/^    bits32 start,end;		\/* Range of chromosome covered. *\/$/;"	m	struct:bbiSummaryOnDisk
end	inc/bigBed.h	/^    bits32 start, end;		\/* Range inside chromosome - half open zero based. *\/$/;"	m	struct:bigBedInterval
end	inc/bigBed.h	/^    bits32 start, end;		\/* Range inside chromosome - half open zero based. *\/$/;"	m	struct:ppBed
end	inc/binRange.h	/^    int start, end;		\/* 0 based, half open range *\/$/;"	m	struct:binElement
end	inc/bwgInternal.h	/^    bits32 start,end;			\/* Range of chromosome covered. *\/$/;"	m	struct:bwgSection
end	inc/bwgInternal.h	/^    bits32 start,end;		\/* Range of chromosome covered. *\/$/;"	m	struct:bwgBedGraphItem
end	inc/bwgInternal.h	/^    bits32 start,end;	\/* Range covered. *\/$/;"	m	struct:bwgSectionHead
end	inc/cirTree.h	/^    bits32 end;		\/* One past last base in interval in chromosome. *\/$/;"	m	struct:cirTreeRange
end	inc/crTree.h	/^    bits32 end;	\/* One past last base in interval in chromosome. *\/$/;"	m	struct:crTreeItem
end	inc/crudeali.h	/^    int start, end;$/;"	m	struct:crudeAli
end	inc/genoFind.h	/^    bits32 start,end;	\/* Position within merged sequence. *\/$/;"	m	struct:gfSeqSource
end	inc/gff.h	/^    int end;        \/* End of feature in sequence. End is not included. *\/$/;"	m	struct:gffGroup
end	inc/gff.h	/^    int end;        \/* End of feature in sequence. End is not included. *\/$/;"	m	struct:gffLine
end	inc/gff3.h	/^    int end;$/;"	m	struct:gff3Ann
end	inc/gff3.h	/^    int end;$/;"	m	struct:gff3SeqRegion
end	inc/htmlPage.h	/^    char *end;	  \/* End of tag (one past closing '>')  Not allocated here.*\/$/;"	m	struct:htmlTag
end	inc/oldGff.h	/^    long start, end;$/;"	m	struct:gffGene
end	inc/oldGff.h	/^    long start, end;$/;"	m	struct:gffSegment
end	inc/rangeTree.h	/^    int start,end;	\/* Zero based half open interval. *\/$/;"	m	struct:range
end	inc/trans3.h	/^     int start,end;			\/* Start\/end of sequence in a larger context. *\/$/;"	m	struct:trans3
end	inc/twoBit.h	/^    bits32 end;                \/* end of subsequence;$/;"	m	struct:twoBitSeqSpec
end	inc/wormdna.h	/^    int start, end;$/;"	m	struct:wormFeature
end	lib/crTree.c	/^    bits32 end;		\/* One past last base in interval in chromosome. *\/$/;"	m	struct:crTreeRange	file:
end	lib/localmem.c	/^    char *end;$/;"	m	struct:lmBlock	file:
end	lib/oldGff.c	/^    long start, end;   \/* Offsets into DNA array, end inclusive *\/$/;"	m	struct:gffSegLine	file:
end3	hg/inc/estPair.h	/^    unsigned end3;	\/* End position of 3' EST in chromosome *\/$/;"	m	struct:estPair
end5	hg/inc/estPair.h	/^    unsigned end5;	\/* End position of 5' EST in chromosome *\/$/;"	m	struct:estPair
endAllQualifier	hg/lib/featureBits.c	/^static boolean endAllQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
endBac	hg/inc/ggDbRep.h	/^    unsigned endBac;	\/* Last bac touched by graph *\/$/;"	m	struct:altGraph
endBac	hg/inc/hgGene.h	/^    unsigned endBac;	\/* Bac this ends in *\/$/;"	m	struct:hgGene
endBac	hg/inc/hgGene.h	/^    unsigned endBac;	\/* Bac this ends in *\/$/;"	m	struct:hgTranscript
endBac	inc/hgGene.h	/^    unsigned endBac;	\/* Bac this ends in *\/$/;"	m	struct:hgGene
endBac	inc/hgGene.h	/^    unsigned endBac;	\/* Bac this ends in *\/$/;"	m	struct:hgTranscript
endBand	hg/inc/stsMap.h	/^    char *endBand;	\/* End of range of bands on FISH map *\/$/;"	m	struct:stsMap
endBand	hg/inc/stsMarker.h	/^    char *endBand;	\/* End of range of bands on FISH map *\/$/;"	m	struct:stsMarker
endBase	inc/cirTree.h	/^    bits32 endBase;		\/* Ending base position. *\/$/;"	m	struct:cirTreeFile
endBase	lib/cirTree.c	/^    bits32 endBase;		\/* Ending base. *\/$/;"	m	struct:rTree	file:
endChromIx	inc/cirTree.h	/^    bits32 endChromIx;		\/* Ending chromosome in file. *\/$/;"	m	struct:cirTreeFile
endChromIx	lib/cirTree.c	/^    bits32 endChromIx;		\/* Ending chromosome. *\/$/;"	m	struct:rTree	file:
endColIx	inc/peakCluster.h	/^    int endColIx;		\/* End ccoordinate column ix. *\/$/;"	m	struct:peakSource
endComplete	hg/inc/cdsEvidence.h	/^    unsigned char endComplete;	\/* Ends with stop codon? *\/$/;"	m	struct:cdsEvidence
endComplete	hg/inc/cdsPick.h	/^    unsigned char endComplete;	\/* Ends with stop codon? *\/$/;"	m	struct:cdsPick
endComplete	hg/inc/genbank.h	/^    boolean endComplete;          \/* is end complete? *\/ $/;"	m	struct:genbankCds
endComplete	hg/inc/txInfo.h	/^    unsigned char endComplete;	\/* Ends with stop codon *\/$/;"	m	struct:txInfo
endContig	hg/inc/bactigPos.h	/^    char *endContig;	\/* Last contig in this bactig *\/$/;"	m	struct:bactigPos
endControlGrid	hg/lib/hui.c	/^void endControlGrid(struct controlGrid **pCg)$/;"	f
endData	lib/udc.c	/^    bits64 endData;		\/* End of area in file we know to have data. *\/$/;"	m	struct:udcFile	file:
endExon	inc/ens.h	/^    struct ensExon *endExon;            \/* Reference to last coding exon. *\/$/;"	m	struct:ensTranscript	typeref:struct:ensTranscript::ensExon
endExpCell	hg/lib/hgExp.c	/^static void endExpCell()$/;"	f	file:
endField	hg/inc/hdb.h	/^    char endField[HDB_MAX_FIELD_STRING];		\/* Name of chromosome end field. *\/$/;"	m	struct:hTableInfo
endField	hg/lib/annoStreamDb.c	/^    char *endField;			\/\/ Name of chromEnd-ish column in table$/;"	m	struct:annoStreamDb	file:
endFileOffset	lib/cirTree.c	/^    bits64 endFileOffset;	\/* End file offset for leaves. *\/$/;"	m	struct:rTree	file:
endGood	inc/cda.h	/^    UBYTE startGood, endGood;   \/* Number of bases matching perfectly on end *\/$/;"	m	struct:cdaBlock
endGood	inc/fuzzyFind.h	/^    int startGood, endGood; \/* Number that match perfectly on ends. *\/$/;"	m	struct:ffAli
endGoods	inc/maDbRep.h	/^    unsigned short *endGoods;	\/* Number of perfect bases at end of block *\/$/;"	m	struct:mrnaAli
endHandler	inc/xap.h	/^   void (*endHandler)(struct xap *xap, char *name);	\/* Handler for end tags. *\/$/;"	m	struct:xap
endIx	hg/inc/txGraph.h	/^    int endIx;	\/* Index of end in vertex array *\/$/;"	m	struct:txEdge
endIx	hg/lib/annoStreamDb.c	/^    int endIx;				\/\/ Index of chromEnd-ish col in autoSql or bin-less table$/;"	m	struct:annoStreamDb	file:
endIx	inc/snof.h	/^    int endIx;$/;"	m	struct:snof
endIx	lib/fof.c	/^    int endIx;                   \/* Last index. *\/$/;"	m	struct:fof	file:
endLists	inc/genoFind.h	/^    bits16 **endLists;                   \/* A more complex list for each N-mer.$/;"	m	struct:genoFind
endPhase	inc/ens.h	/^    char endPhase;                      \/* Codon position of last base. *\/$/;"	m	struct:ensExon
endPos	hg/inc/ggDbRep.h	/^    unsigned endPos;	\/* End position in last bac *\/$/;"	m	struct:altGraph
endPos	hg/inc/hgGene.h	/^    unsigned endPos;	\/* Position withing bac where ends *\/$/;"	m	struct:hgGene
endPos	hg/inc/hgGene.h	/^    unsigned endPos;	\/* Position withing bac where ends *\/$/;"	m	struct:hgTranscript
endPos	inc/hgGene.h	/^    unsigned endPos;	\/* Position withing bac where ends *\/$/;"	m	struct:hgGene
endPos	inc/hgGene.h	/^    unsigned endPos;	\/* Position withing bac where ends *\/$/;"	m	struct:hgTranscript
endQualifier	hg/lib/featureBits.c	/^static boolean endQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
endSP6	hg/inc/genMapDb.h	/^    unsigned endSP6;	\/* End position in chrom for SP6 end sequence *\/$/;"	m	struct:genMapDb
endSeq	inc/ens.h	/^    int startSeq, endSeq;               \/* Start, end of coding region. *\/$/;"	m	struct:ensTranscript
endStack	inc/xap.h	/^   struct xapStack *endStack;			\/* End of stack. *\/$/;"	m	struct:xap	typeref:struct:xap::xapStack
endState	jkOwnLib/xensmall.c	301;"	d	file:
endState	jkOwnLib/xensmall.c	469;"	d	file:
endState	lib/axtAffine.c	189;"	d	file:
endState	lib/axtAffine.c	97;"	d	file:
endT7	hg/inc/genMapDb.h	/^    unsigned endT7;	\/* End position in chrom for T7 end sequence *\/$/;"	m	struct:genMapDb
endTag	inc/htmlPage.h	/^    struct htmlTag *endTag;	\/* Tag one past <\/FORM> . Not allocated here. *\/$/;"	m	struct:htmlForm	typeref:struct:htmlForm::htmlTag
endTag	inc/xp.h	/^    struct dyString *endTag;		\/* Buffer for an end tag. *\/$/;"	m	struct:xp	typeref:struct:xp::dyString
endType	hg/inc/txEdgeBed.h	/^    char endType[2];	\/* ] or ) for hard or soft *\/$/;"	m	struct:txEdgeBed
endType	hg/inc/txEdgeOrtho.h	/^    char endType[2];	\/* ] or ) for hard or soft *\/$/;"	m	struct:txEdgeOrtho
ending	lib/gifdecomp.c	/^static WORD ending;                        \/* Value for a ending code *\/$/;"	v	file:
endsSizesField	hg/inc/hdb.h	/^    char endsSizesField[HDB_MAX_FIELD_STRING];	\/* Name of exon(block)Ends(Sizes) field. *\/$/;"	m	struct:hTableInfo
endsWith	lib/common.c	/^boolean endsWith(char *string, char *end)$/;"	f
energy	hg/inc/rnaFold.h	/^    float energy;	\/* Estimated free energy of folding (negative) *\/$/;"	m	struct:rnaFold
ensAnalysis	inc/ens.h	/^struct ensAnalysis$/;"	s
ensContigViewUrl	hg/lib/ensFace.c	/^struct dyString *ensContigViewUrl($/;"	f
ensExon	inc/ens.h	/^struct ensExon$/;"	s
ensFeature	inc/ens.h	/^struct ensFeature$/;"	s
ensGene	inc/ens.h	/^struct ensGene$/;"	s
ensGeneId	hg/inc/ensXRefZfish.h	/^    char *ensGeneId;	\/* Ensembl Transcript ID *\/$/;"	m	struct:ensXRefZfish
ensGeneTrackVersion	hg/lib/ensFace.c	/^void ensGeneTrackVersion(char *database, char *ensVersionString,$/;"	f
ensId	hg/inc/hgnc.h	/^    char *ensId;	\/* Ensembl Gene ID *\/$/;"	m	struct:hgnc
ensInfo	hg/inc/ensInfo.h	/^struct ensInfo$/;"	s
ensInfoCommaIn	hg/lib/ensInfo.c	/^struct ensInfo *ensInfoCommaIn(char **pS, struct ensInfo *ret)$/;"	f
ensInfoCommaOut	hg/inc/ensInfo.h	60;"	d
ensInfoFree	hg/lib/ensInfo.c	/^void ensInfoFree(struct ensInfo **pEl)$/;"	f
ensInfoFreeList	hg/lib/ensInfo.c	/^void ensInfoFreeList(struct ensInfo **pList)$/;"	f
ensInfoLoad	hg/lib/ensInfo.c	/^struct ensInfo *ensInfoLoad(char **row)$/;"	f
ensInfoLoadAll	hg/lib/ensInfo.c	/^struct ensInfo *ensInfoLoadAll(char *fileName) $/;"	f
ensInfoLoadAllByChar	hg/lib/ensInfo.c	/^struct ensInfo *ensInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
ensInfoLoadAllByTab	hg/inc/ensInfo.h	38;"	d
ensInfoOutput	hg/lib/ensInfo.c	/^void ensInfoOutput(struct ensInfo *el, FILE *f, char sep, char lastSep) $/;"	f
ensInfoStaticLoad	hg/lib/ensInfo.c	/^void ensInfoStaticLoad(char **row, struct ensInfo *ret)$/;"	f
ensInfoTabOut	hg/inc/ensInfo.h	57;"	d
ensMapped	hg/inc/hgnc.h	/^    char *ensMapped;	\/* ENSEMLB ID (mapped data) *\/$/;"	m	struct:hgnc
ensOrgNameFromScientificName	hg/lib/ensFace.c	/^char *ensOrgNameFromScientificName(char *scientificName)$/;"	f
ensPhusionBlast	hg/inc/ensPhusionBlast.h	/^struct ensPhusionBlast$/;"	s
ensPhusionBlastCommaIn	hg/lib/ensPhusionBlast.c	/^struct ensPhusionBlast *ensPhusionBlastCommaIn(char **pS, struct ensPhusionBlast *ret)$/;"	f
ensPhusionBlastCommaOut	hg/inc/ensPhusionBlast.h	57;"	d
ensPhusionBlastFree	hg/lib/ensPhusionBlast.c	/^void ensPhusionBlastFree(struct ensPhusionBlast **pEl)$/;"	f
ensPhusionBlastFreeList	hg/lib/ensPhusionBlast.c	/^void ensPhusionBlastFreeList(struct ensPhusionBlast **pList)$/;"	f
ensPhusionBlastLoad	hg/lib/ensPhusionBlast.c	/^struct ensPhusionBlast *ensPhusionBlastLoad(char **row)$/;"	f
ensPhusionBlastLoadAll	hg/lib/ensPhusionBlast.c	/^struct ensPhusionBlast *ensPhusionBlastLoadAll(char *fileName) $/;"	f
ensPhusionBlastLoadWhere	hg/lib/ensPhusionBlast.c	/^struct ensPhusionBlast *ensPhusionBlastLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
ensPhusionBlastOutput	hg/lib/ensPhusionBlast.c	/^void ensPhusionBlastOutput(struct ensPhusionBlast *el, FILE *f, char sep, char lastSep) $/;"	f
ensPhusionBlastStaticLoad	hg/lib/ensPhusionBlast.c	/^void ensPhusionBlastStaticLoad(char **row, struct ensPhusionBlast *ret)$/;"	f
ensPhusionBlastTabOut	hg/inc/ensPhusionBlast.h	54;"	d
ensTranscript	inc/ens.h	/^struct ensTranscript$/;"	s
ensXRefZfish	hg/inc/ensXRefZfish.h	/^struct ensXRefZfish$/;"	s
ensXRefZfishCommaIn	hg/lib/ensXRefZfish.c	/^struct ensXRefZfish *ensXRefZfishCommaIn(char **pS, struct ensXRefZfish *ret)$/;"	f
ensXRefZfishCommaOut	hg/inc/ensXRefZfish.h	63;"	d
ensXRefZfishFree	hg/lib/ensXRefZfish.c	/^void ensXRefZfishFree(struct ensXRefZfish **pEl)$/;"	f
ensXRefZfishFreeList	hg/lib/ensXRefZfish.c	/^void ensXRefZfishFreeList(struct ensXRefZfish **pList)$/;"	f
ensXRefZfishLoad	hg/lib/ensXRefZfish.c	/^struct ensXRefZfish *ensXRefZfishLoad(char **row)$/;"	f
ensXRefZfishLoadAll	hg/lib/ensXRefZfish.c	/^struct ensXRefZfish *ensXRefZfishLoadAll(char *fileName) $/;"	f
ensXRefZfishLoadAllByChar	hg/lib/ensXRefZfish.c	/^struct ensXRefZfish *ensXRefZfishLoadAllByChar(char *fileName, char chopper) $/;"	f
ensXRefZfishLoadAllByTab	hg/inc/ensXRefZfish.h	41;"	d
ensXRefZfishOutput	hg/lib/ensXRefZfish.c	/^void ensXRefZfishOutput(struct ensXRefZfish *el, FILE *f, char sep, char lastSep) $/;"	f
ensXRefZfishStaticLoad	hg/lib/ensXRefZfish.c	/^void ensXRefZfishStaticLoad(char **row, struct ensXRefZfish *ret)$/;"	f
ensXRefZfishTabOut	hg/inc/ensXRefZfish.h	60;"	d
ensureHistoryTableExists	hg/lib/hgRelate.c	/^static void ensureHistoryTableExists(struct sqlConnection *conn)$/;"	f	file:
entrezGene	hg/inc/minGeneInfo.h	/^    char *entrezGene;	\/* entrez gene id *\/$/;"	m	struct:minGeneInfo
entrezId	hg/inc/hgnc.h	/^    char *entrezId;	\/* Entrez Gene ID *\/$/;"	m	struct:hgnc
entrezMapped	hg/inc/hgnc.h	/^    char *entrezMapped;	\/* Entrez Gene ID (mapped data) *\/$/;"	m	struct:hgnc
entries	hg/lib/jksql.c	/^    struct sqlConnCacheEntry *entries;          \/* entries in the cache *\/$/;"	m	struct:sqlConnCache	typeref:struct:sqlConnCache::sqlConnCacheEntry	file:
entropy	hg/inc/simpleRepeat.h	/^    float entropy;	\/* Entropy *\/$/;"	m	struct:simpleRepeat
entry	hg/inc/agp.h	/^    void *entry;        \/* agpFrag or agpGap *\/$/;"	m	struct:agp
entryCnt	hg/lib/jksql.c	/^    int entryCnt;                               \/* # open connections. *\/$/;"	m	struct:sqlConnCache	file:
enumBool	inc/common.h	/^enum enumBool$/;"	g
envOverride	hg/lib/jksql.c	/^static char *envOverride(char *envName, char *defaultVal)$/;"	f	file:
envUpdate	lib/portimpl.c	/^void envUpdate(char *name, char *value)$/;"	f
enzyme	hg/inc/affy10KDetails.h	/^    char enzyme[9];	\/* The enzyme that was used to prepare the sample (HindIII or XbaI) *\/$/;"	m	struct:affy10KDetails
enzyme	hg/inc/affy120KDetails.h	/^    char enzyme[9];	\/* The enzyme that was used to prepare the sample (HindIII or XbaI) *\/$/;"	m	struct:affy120KDetails
enzyme	hg/inc/affyGenoDetails.h	/^    char enzyme[9];	\/* The enzyme that was used to prepare the sample (HindIII or XbaI) *\/$/;"	m	struct:affyGenoDetails
enzymeIds	hg/inc/hgnc.h	/^    char *enzymeIds;	\/* Enzyme IDs *\/$/;"	m	struct:hgnc
eod	inc/mime.h	/^    char *eod;              \/* end of data = eoi-(blen-1) *\/$/;"	m	struct:mimeBuf
eof	inc/annoGrator.h	/^    boolean eof;			\/\/ stop asking internal source for rows when it's done$/;"	m	struct:annoGrator
eof	inc/tokenizer.h	/^    bool eof;            \/* True at end of file. *\/$/;"	m	struct:tokenizer
eof_code	lib/gifcomp.c	/^static short eof_code;$/;"	v	file:
eoi	inc/mime.h	/^    char *eoi;              \/* end of input or -1 *\/$/;"	m	struct:mimeBuf
eom	inc/mime.h	/^    char *eom;              \/* end of memory just buf+MIMEBUFSIZE *\/$/;"	m	struct:mimeBuf
eop	inc/mime.h	/^    char *eop;              \/* end of part or -1 *\/$/;"	m	struct:mimeBuf
eraseNonAlphaNum	lib/common.c	/^void eraseNonAlphaNum(char *s)$/;"	f
eraseTrailingSpaces	lib/common.c	/^void eraseTrailingSpaces(char *s)$/;"	f
eraseWhiteSpace	lib/common.c	/^void eraseWhiteSpace(char *s)$/;"	f
errAbort	lib/errabort.c	/^void errAbort(char *format, ...)$/;"	f
errAbortDebugnPushPopErr	lib/errabort.c	/^void errAbortDebugnPushPopErr()$/;"	f
errAbortInProgress	lib/errabort.c	/^    boolean errAbortInProgress;     \/* Flag to indicate that an error abort is in progress.$/;"	m	struct:perThreadAbortVars	file:
errCart	hg/lib/web.c	/^static struct cart *errCart = NULL;$/;"	v	typeref:struct:cart	file:
errCatch	inc/errCatch.h	/^struct errCatch$/;"	s
errCatchAbortHandler	lib/errCatch.c	/^static void errCatchAbortHandler()$/;"	f	file:
errCatchEnd	lib/errCatch.c	/^void errCatchEnd(struct errCatch *errCatch)$/;"	f
errCatchFinish	lib/errCatch.c	/^boolean errCatchFinish(struct errCatch **pErrCatch)$/;"	f
errCatchFree	lib/errCatch.c	/^void errCatchFree(struct errCatch **pErrCatch)$/;"	f
errCatchNew	lib/errCatch.c	/^struct errCatch *errCatchNew()$/;"	f
errCatchPushHandlers	lib/errCatch.c	/^boolean errCatchPushHandlers(struct errCatch *errCatch)$/;"	f
errCatchStart	inc/errCatch.h	38;"	d
errCatchWarnHandler	lib/errCatch.c	/^static void errCatchWarnHandler(char *format, va_list args)$/;"	f	file:
errCnt	inc/gff3.h	/^    int errCnt;             \/* error count *\/$/;"	m	struct:gff3File
errCnt	inc/vcf.h	/^    int errCnt;			\/\/ Error count$/;"	m	struct:vcfFile
errFh	inc/gff3.h	/^    FILE *errFh;            \/* write errors to this file *\/$/;"	m	struct:gff3File
errMessage	inc/qa.h	/^    char *errMessage;	\/* Error message if any. *\/$/;"	m	struct:qaStatus
errRecover	lib/snofmake.c	/^static jmp_buf errRecover;$/;"	v	file:
errfile	lib/oldGff.c	17;"	d	file:
errnoAbort	lib/errabort.c	/^void errnoAbort(char *format, ...)$/;"	f
errnoWarn	lib/errabort.c	/^void errnoWarn(char *format, ...)$/;"	f
error	hg/inc/sgdAbundance.h	/^    char *error;	\/* Error - either a floating point number or blank *\/$/;"	m	struct:sgdAbundance
errorMessage	hg/inc/hubConnect.h	/^    char *errorMessage;	\/* If non-empty hub has an error and this describes it. *\/$/;"	m	struct:hubConnectStatus
escCopy	lib/obscure.c	/^void escCopy(char *in, char *out, char toEscape, char escape)$/;"	f
escapeChar	lib/gff3.c	/^static char *escapeChar(char c)$/;"	f	file:
escapeTermRegex	hg/lib/hgFindSpecCustom.c	/^static void escapeTermRegex(struct hgFindSpec *hfs)$/;"	f	file:
est	hg/inc/bdgpExprLink.h	/^    char *est;	\/* EST accession *\/$/;"	m	struct:bdgpExprLink
est3	hg/inc/est3.h	/^struct est3$/;"	s
est3CommaIn	hg/lib/est3.c	/^struct est3 *est3CommaIn(char **pS, struct est3 *ret)$/;"	f
est3CommaOut	hg/inc/est3.h	45;"	d
est3Free	hg/lib/est3.c	/^void est3Free(struct est3 **pEl)$/;"	f
est3FreeList	hg/lib/est3.c	/^void est3FreeList(struct est3 **pList)$/;"	f
est3Load	hg/lib/est3.c	/^struct est3 *est3Load(char **row)$/;"	f
est3Output	hg/lib/est3.c	/^void est3Output(struct est3 *el, FILE *f, char sep, char lastSep) $/;"	f
est3StaticLoad	hg/lib/est3.c	/^void est3StaticLoad(char **row, struct est3 *ret)$/;"	f
est3TabOut	hg/inc/est3.h	42;"	d
estCount	hg/inc/est3.h	/^    unsigned estCount;	\/* Number of ESTs supporting this *\/$/;"	m	struct:est3
estLabels	hg/lib/hgFind.c	/^static char *estLabels[] = { "Spliced ESTs", "ESTs", "Other ESTs", NULL };$/;"	v	file:
estOrientInfo	hg/inc/estOrientInfo.h	/^struct estOrientInfo$/;"	s
estOrientInfoCommaIn	hg/lib/estOrientInfo.c	/^struct estOrientInfo *estOrientInfoCommaIn(char **pS, struct estOrientInfo *ret)$/;"	f
estOrientInfoCommaOut	hg/inc/estOrientInfo.h	63;"	d
estOrientInfoFree	hg/lib/estOrientInfo.c	/^void estOrientInfoFree(struct estOrientInfo **pEl)$/;"	f
estOrientInfoFreeList	hg/lib/estOrientInfo.c	/^void estOrientInfoFreeList(struct estOrientInfo **pList)$/;"	f
estOrientInfoGetCreateSql	hg/lib/estOrientInfo.c	/^char *estOrientInfoGetCreateSql(char *table, int chromIdxLen)$/;"	f
estOrientInfoLoad	hg/lib/estOrientInfo.c	/^struct estOrientInfo *estOrientInfoLoad(char **row)$/;"	f
estOrientInfoLoadAll	hg/lib/estOrientInfo.c	/^struct estOrientInfo *estOrientInfoLoadAll(char *fileName) $/;"	f
estOrientInfoLoadLm	hg/lib/estOrientInfo.c	/^struct estOrientInfo *estOrientInfoLoadLm(char **row, struct lm *lm)$/;"	f
estOrientInfoLoadWhere	hg/lib/estOrientInfo.c	/^struct estOrientInfo *estOrientInfoLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
estOrientInfoOutput	hg/lib/estOrientInfo.c	/^void estOrientInfoOutput(struct estOrientInfo *el, FILE *f, char sep, char lastSep) $/;"	f
estOrientInfoStaticLoad	hg/lib/estOrientInfo.c	/^void estOrientInfoStaticLoad(char **row, struct estOrientInfo *ret)$/;"	f
estOrientInfoTabOut	hg/inc/estOrientInfo.h	60;"	d
estPair	hg/inc/estPair.h	/^struct estPair$/;"	s
estPairCommaIn	hg/lib/estPair.c	/^struct estPair *estPairCommaIn(char **pS, struct estPair *ret)$/;"	f
estPairCommaOut	hg/inc/estPair.h	54;"	d
estPairFree	hg/lib/estPair.c	/^void estPairFree(struct estPair **pEl)$/;"	f
estPairFreeList	hg/lib/estPair.c	/^void estPairFreeList(struct estPair **pList)$/;"	f
estPairLoad	hg/lib/estPair.c	/^struct estPair *estPairLoad(char **row)$/;"	f
estPairLoadAll	hg/lib/estPair.c	/^struct estPair *estPairLoadAll(char *fileName) $/;"	f
estPairOutput	hg/lib/estPair.c	/^void estPairOutput(struct estPair *el, FILE *f, char sep, char lastSep) $/;"	f
estPairStaticLoad	hg/lib/estPair.c	/^void estPairStaticLoad(char **row, struct estPair *ret)$/;"	f
estPairTabOut	hg/inc/estPair.h	51;"	d
estTables	hg/lib/hgFind.c	/^static char *estTables[] = { "intronEst", "all_est", "xenoEst", NULL };$/;"	v	file:
ethnicGroup	hg/inc/polyGenotype.h	/^    char *ethnicGroup;	\/* Ethnic group for this measurement *\/$/;"	m	struct:polyGenotype
evCount	hg/inc/altGraphX.h	/^    int evCount;	\/* number of ests evidence *\/$/;"	m	struct:evidence
evCount	hg/inc/txGraph.h	/^    int evCount;	\/* Count of evidence *\/$/;"	m	struct:txEdge
evList	hg/inc/txGraph.h	/^    struct txEvidence *evList;	\/* List of evidence *\/$/;"	m	struct:txEdge	typeref:struct:txEdge::txEvidence
evalExactAli	jkOwnLib/fuzzyFind.c	/^double evalExactAli(struct ffAli *ali, DNA *ns, DNA *ne, DNA *hs, DNA *he, int numTiles,$/;"	f
evalToDouble	lib/blastParse.c	/^static double evalToDouble(char *s)$/;"	f	file:
evaluateAlignments	hg/lib/coordConv.c	/^void evaluateAlignments(struct coordConvRep *ccr) $/;"	f
evalue	hg/inc/cddInfo.h	/^    double evalue;	\/* Expect value *\/$/;"	m	struct:cddInfo
evalue	hg/inc/codeBlastScore.h	/^    char *evalue;	\/* evalue *\/$/;"	m	struct:codeBlastScore
evalue	hg/inc/megablastInfo.h	/^    double evalue;	\/* Expect value *\/$/;"	m	struct:megablastInfo
evalue	hg/inc/sargassoSeaXra.h	/^    char *evalue;	\/* evalue *\/$/;"	m	struct:sargassoSeaXra
evidence	hg/inc/affyAllExonProbe.h	/^    char *evidence;	\/* Evidence for the exon from various sources *\/$/;"	m	struct:affyAllExonProbe
evidence	hg/inc/altGraphX.h	/^    struct evidence *evidence;	\/* array of evidence tables containing$/;"	m	struct:altGraphX	typeref:struct:altGraphX::evidence
evidence	hg/inc/altGraphX.h	/^struct evidence$/;"	s
evidence	hg/inc/geneGraph.h	/^    struct ggEvidence ***evidence;       \/* Like adjacency matrix except each point is an linked list of supporting evidence *\/$/;"	m	struct:geneGraph	typeref:struct:geneGraph::ggEvidence
evidence	hg/inc/goa.h	/^    char *evidence;	\/* Evidence for association.  Somthing like 'IMP' *\/$/;"	m	struct:goa
evidenceCommaIn	hg/lib/altGraphX.c	/^struct evidence *evidenceCommaIn(char **pS, struct evidence *ret)$/;"	f
evidenceCommaOut	hg/inc/altGraphX.h	69;"	d
evidenceFree	hg/lib/altGraphX.c	/^void evidenceFree(struct evidence **pEl)$/;"	f
evidenceFreeList	hg/lib/altGraphX.c	/^void evidenceFreeList(struct evidence **pList)$/;"	f
evidenceOutput	hg/lib/altGraphX.c	/^void evidenceOutput(struct evidence *el, FILE *f, char sep, char lastSep) $/;"	f
evidenceTabOut	hg/inc/altGraphX.h	66;"	d
exactAli	jkOwnLib/fuzzyFind.c	/^static struct ffAli *exactAli(DNA *ns, DNA *ne, DNA *hs, DNA *he)$/;"	f	file:
exactFind	jkOwnLib/fuzzyFind.c	/^static boolean exactFind(DNA *needle, int nSize, DNA *hay, int hSize, int *hOffset)$/;"	f	file:
exactTermFormat	hg/lib/hgFindSpecCustom.c	/^static char *exactTermFormat = "'%s'";$/;"	v	file:
exactTermFormatRegex	hg/lib/hgFindSpecCustom.c	/^static char *exactTermFormatRegex = "['\\"]?.*%s.*['\\"]?$";$/;"	v	file:
exception	hg/inc/snp.h	/^    char *exception;	\/* List of exceptionIds for 'invariant' conditions *\/$/;"	m	struct:snp
exception	hg/inc/snp125Exceptions.h	/^    char *exception;	\/* Exception found for this SNP *\/$/;"	m	struct:snp125Exceptions
exceptionId	hg/inc/snpExceptions.h	/^    unsigned exceptionId;	\/* unique ID for this exception *\/$/;"	m	struct:snpExceptions
exceptions	hg/inc/snp132Ext.h	/^    char *exceptions;	\/* Unusual conditions noted by UCSC that may indicate a problem with the data *\/$/;"	m	struct:snp132Ext
exclude	hg/inc/cart.h	/^   struct hash *exclude;	\/* Null valued hash of variables not to save. *\/$/;"	m	struct:cart	typeref:struct:cart::hash
exclude	hg/inc/joiner.h	/^    struct slName *exclude;	\/* List of keys to exclude from verification *\/$/;"	m	struct:joinerField	typeref:struct:joinerField::slName
exclusiveSets	hg/inc/joiner.h	/^    struct hash *exclusiveSets; \/* List of hashes of exclusive databases. *\/$/;"	m	struct:joiner	typeref:struct:joiner::hash
execPStack	lib/osunix.c	/^static void execPStack(pid_t ppid)$/;"	f	file:
execProcChild	lib/pipeline.c	/^static void execProcChild(struct pipeline* pl, struct plProc *proc,$/;"	f	file:
exoFish	hg/inc/exoFish.h	/^struct exoFish$/;"	s
exoFishCommaIn	hg/lib/exoFish.c	/^struct exoFish *exoFishCommaIn(char **pS, struct exoFish *ret)$/;"	f
exoFishCommaOut	hg/inc/exoFish.h	45;"	d
exoFishFree	hg/lib/exoFish.c	/^void exoFishFree(struct exoFish **pEl)$/;"	f
exoFishFreeList	hg/lib/exoFish.c	/^void exoFishFreeList(struct exoFish **pList)$/;"	f
exoFishLoad	hg/lib/exoFish.c	/^struct exoFish *exoFishLoad(char **row)$/;"	f
exoFishOutput	hg/lib/exoFish.c	/^void exoFishOutput(struct exoFish *el, FILE *f, char sep, char lastSep) $/;"	f
exoFishStaticLoad	hg/lib/exoFish.c	/^void exoFishStaticLoad(char **row, struct exoFish *ret)$/;"	f
exoFishTabOut	hg/inc/exoFish.h	42;"	d
exonBuffer	hg/lib/mafGene.c	/^static char exonBuffer[MAX_EXON_SIZE];$/;"	v	file:
exonClusterId	hg/inc/affyAllExonProbe.h	/^    char *exonClusterId;	\/* ??? ID of the probes exon cluster *\/$/;"	m	struct:affyAllExonProbe
exonCount	hg/inc/genePred.h	/^    unsigned exonCount;	\/* Number of exons *\/$/;"	m	struct:genePred
exonCount	hg/inc/hgGene.h	/^    unsigned exonCount;	\/* Number of exons *\/$/;"	m	struct:hgTranscript
exonCount	hg/inc/pseudoGeneLink.h	/^    unsigned exonCount;	\/* # of exons in gene  *\/$/;"	m	struct:pseudoGeneLink
exonCount	hg/inc/sangerGene.h	/^    unsigned exonCount;	\/* Number of exons *\/$/;"	m	struct:sangerGene
exonCount	hg/inc/txInfo.h	/^    int exonCount;	\/* Number of exons (excludes gaps from frame shift\/stops) *\/$/;"	m	struct:txInfo
exonCount	inc/hgGene.h	/^    unsigned exonCount;	\/* Number of exons *\/$/;"	m	struct:hgTranscript
exonCover	hg/inc/pseudoGeneLink.h	/^    int exonCover;	\/* number of exons in Gene covered *\/$/;"	m	struct:pseudoGeneLink
exonCover	hg/inc/retroMrnaInfo.h	/^    int exonCover;	\/* number of exons in Gene covered col24 *\/$/;"	m	struct:retroMrnaInfo
exonCover	hg/inc/ucscRetroInfo.h	/^    int exonCover;	\/* number of exons in Gene covered col24 *\/$/;"	m	struct:ucscRetroInfo
exonEnclosed	hg/lib/ggGraph.c	/^static boolean exonEnclosed(struct geneGraph *gg, int startIx, int endIx,$/;"	f	file:
exonEndBacs	hg/inc/hgGene.h	/^    unsigned *exonEndBacs;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonEndBacs	inc/hgGene.h	/^    unsigned *exonEndBacs;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonEndPos	hg/inc/hgGene.h	/^    unsigned *exonEndPos;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonEndPos	inc/hgGene.h	/^    unsigned *exonEndPos;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonEnds	hg/inc/genePred.h	/^    unsigned *exonEnds;	\/* Exon end positions *\/$/;"	m	struct:genePred
exonEnds	hg/inc/sangerGene.h	/^    unsigned *exonEnds;	\/* Exon end positions *\/$/;"	m	struct:sangerGene
exonFrames	hg/inc/genePred.h	/^    int *exonFrames;              \/* List of frame for each exon, or -1$/;"	m	struct:genePred
exonFramesFieldSql	hg/lib/genePred.c	/^static char *exonFramesFieldSql = $/;"	v	file:
exonId	inc/gff.h	/^    char *exonId;       \/* exon_id in GTF, NULL in GFF. Not allocated here. *\/$/;"	m	struct:gffLine
exonIdHash	inc/ens.h	/^    struct hash *exonIdHash;		  \/* Fast lookup of exons from exon ids. *\/$/;"	m	struct:ensGene	typeref:struct:ensGene::hash
exonInfo	hg/lib/mafGene.c	/^struct exonInfo$/;"	s	file:
exonList	inc/ens.h	/^    struct dlList *exonList;		\/* Ordered list of exon references. *\/$/;"	m	struct:ensTranscript	typeref:struct:ensTranscript::dlList
exonList	inc/ens.h	/^    struct ensExon *exonList;		  \/* Total exons in all transcripts. *\/$/;"	m	struct:ensGene	typeref:struct:ensGene::ensExon
exonNumber	hg/inc/soterm.h	/^	    uint exonNumber;$/;"	m	struct:soCall::__anon12::codingChange
exonNumber	inc/gff.h	/^    int exonNumber; \/* O in GFF or if missing in GTF.  Otherwise exon number. *\/$/;"	m	struct:gffLine
exonOverlaps	hg/lib/ggCluster.c	/^static boolean exonOverlaps(int eStart, int eEnd, struct ggMrnaCluster *mc)$/;"	f	file:
exonQualifier	hg/lib/featureBits.c	/^static boolean exonQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
exonSize	hg/lib/mafGene.c	/^    int exonSize;$/;"	m	struct:exonInfo	file:
exonStart	hg/lib/mafGene.c	/^    int exonStart;$/;"	m	struct:exonInfo	file:
exonStartBacs	hg/inc/hgGene.h	/^    unsigned *exonStartBacs;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonStartBacs	inc/hgGene.h	/^    unsigned *exonStartBacs;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonStartPos	hg/inc/hgGene.h	/^    unsigned *exonStartPos;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonStartPos	inc/hgGene.h	/^    unsigned *exonStartPos;	\/* Exon start positions *\/$/;"	m	struct:hgTranscript
exonStarts	hg/inc/genePred.h	/^    unsigned *exonStarts;	\/* Exon start positions *\/$/;"	m	struct:genePred
exonStarts	hg/inc/sangerGene.h	/^    unsigned *exonStarts;	\/* Exon start positions *\/$/;"	m	struct:sangerGene
exonToPos	hg/lib/genePred.c	/^boolean exonToPos(struct genePred *gp, unsigned num, int *chromStart, int *chromEnd)$/;"	f
exons	inc/oldGff.h	/^    GffExon *exons;$/;"	m	struct:gffGene
exp	hg/inc/sageExp.h	/^    char *exp;	\/* experiments name. *\/$/;"	m	struct:sageExp
exp	hg/inc/stanMad.h	/^    char *exp;	\/* Name of the experiment based on the array id. *\/$/;"	m	struct:stanMad
exp	lib/keys.c	/^struct exp$/;"	s	file:
expColorType	hg/inc/microarray.h	/^enum expColorType $/;"	g
expCount	hg/inc/expData.h	/^    unsigned expCount;	\/* Number of scores *\/$/;"	m	struct:expData
expCount	inc/basicBed.h	/^    int expCount;	\/* Experiment count *\/$/;"	m	struct:bed
expCounts	hg/inc/sageCounts.h	/^    int *expCounts;	\/* Counts from each experiment *\/$/;"	m	struct:sageCounts
expData	hg/inc/expData.h	/^struct expData$/;"	s
expDataCommaIn	hg/lib/expData.c	/^struct expData *expDataCommaIn(char **pS, struct expData *ret)$/;"	f
expDataCommaOut	hg/inc/expData.h	53;"	d
expDataConnectAndLoadTable	hg/lib/expData.c	/^struct expData *expDataConnectAndLoadTable(char *database, char *table)$/;"	f
expDataCreateTable	hg/lib/expData.c	/^void expDataCreateTable(struct sqlConnection *conn, char *table)$/;"	f
expDataFree	hg/lib/expData.c	/^void expDataFree(struct expData **pEl)$/;"	f
expDataFreeList	hg/lib/expData.c	/^void expDataFreeList(struct expData **pList)$/;"	f
expDataLoad	hg/lib/expData.c	/^struct expData *expDataLoad(char **row)$/;"	f
expDataLoadAll	hg/lib/expData.c	/^struct expData *expDataLoadAll(char *fileName) $/;"	f
expDataLoadAllByChar	hg/lib/expData.c	/^struct expData *expDataLoadAllByChar(char *fileName, char chopper) $/;"	f
expDataLoadAllByTab	hg/inc/expData.h	31;"	d
expDataLoadTable	hg/lib/expData.c	/^struct expData *expDataLoadTable(struct sqlConnection *conn, char *table)$/;"	f
expDataLoadTableLimit	hg/lib/expData.c	/^struct expData *expDataLoadTableLimit(struct sqlConnection *conn, char *table, int limitRows)$/;"	f
expDataOutput	hg/lib/expData.c	/^void expDataOutput(struct expData *el, FILE *f, char sep, char lastSep) $/;"	f
expDataTabOut	hg/inc/expData.h	50;"	d
expIds	hg/inc/microarray.h	/^    int *expIds;$/;"	m	struct:maGrouping
expIds	inc/basicBed.h	/^    int *expIds;		\/* Comma separated list of Experiment ids *\/$/;"	m	struct:bed
expRatioCombineDLName	hg/lib/microarray.c	/^char *expRatioCombineDLName(char *trackName)$/;"	f
expRatioSubsetDLName	hg/lib/microarray.c	/^char *expRatioSubsetDLName(char *trackName, struct maGrouping *group)$/;"	f
expRatioSubsetRadioName	hg/lib/microarray.c	/^char *expRatioSubsetRadioName(char *trackName, struct microarrayGroups *groupings)$/;"	f
expRecord	hg/inc/expRecord.h	/^struct expRecord$/;"	s
expRecordCommaIn	hg/lib/expRecord.c	/^struct expRecord *expRecordCommaIn(char **pS, struct expRecord *ret)$/;"	f
expRecordCommaOut	hg/inc/expRecord.h	77;"	d
expRecordConnectAndLoadTable	hg/lib/expRecord.c	/^struct expRecord *expRecordConnectAndLoadTable(char *database, char *table)$/;"	f
expRecordCreateTable	hg/lib/expRecord.c	/^void expRecordCreateTable(struct sqlConnection *conn, char *table)$/;"	f
expRecordFree	hg/lib/expRecord.c	/^void expRecordFree(struct expRecord **pEl)$/;"	f
expRecordFreeList	hg/lib/expRecord.c	/^void expRecordFreeList(struct expRecord **pList)$/;"	f
expRecordLoad	hg/lib/expRecord.c	/^struct expRecord *expRecordLoad(char **row)$/;"	f
expRecordLoadAll	hg/lib/expRecord.c	/^struct expRecord *expRecordLoadAll(char *fileName) $/;"	f
expRecordLoadByQuery	hg/lib/expRecord.c	/^struct expRecord *expRecordLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
expRecordLoadTable	hg/lib/expRecord.c	/^struct expRecord *expRecordLoadTable(struct sqlConnection *conn, char *table)$/;"	f
expRecordOutput	hg/lib/expRecord.c	/^void expRecordOutput(struct expRecord *el, FILE *f, char sep, char lastSep) $/;"	f
expRecordSaveToDb	hg/lib/expRecord.c	/^void expRecordSaveToDb(struct sqlConnection *conn, struct expRecord *el, char *tableName, int updateSize)$/;"	f
expRecordSaveToDbEscaped	hg/lib/expRecord.c	/^void expRecordSaveToDbEscaped(struct sqlConnection *conn, struct expRecord *el, char *tableName, int updateSize)$/;"	f
expRecordTabOut	hg/inc/expRecord.h	74;"	d
expScores	hg/inc/expData.h	/^    float *expScores;	\/* Scores. May be absolute or relative ratio *\/$/;"	m	struct:expData
expScores	inc/basicBed.h	/^    float *expScores;	\/* Comma separated list of Experiment scores. *\/$/;"	m	struct:bed
expSubcellWidth	hg/lib/hgExp.c	/^static int expSubcellWidth = 21;$/;"	v	file:
expandAlis	jkOwnLib/fuzzyFind.c	/^static struct ffAli *expandAlis(struct ffAli *ali, DNA *nStart, DNA *nEnd, DNA *hStart, DNA *hEnd, $/;"	f	file:
expandBigDataUrl	hg/lib/trackHub.c	/^static void expandBigDataUrl(struct trackHub *hub, struct trackHubGenome *genome,$/;"	f	file:
expandEntities	lib/dtdParse.c	/^static void expandEntities(char *s, struct hash *entityHash, struct lineFile *lf,$/;"	f	file:
expandFaFastBuf	lib/fa.c	/^static void expandFaFastBuf(int bufPos, int minExp)$/;"	f	file:
expandGapless	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *expandGapless(struct dnaSeq *qSeq, struct dnaSeq *tSeq, struct ffAli *ffList)$/;"	f	file:
expandLeft	jkOwnLib/fuzzyFind.c	/^static boolean expandLeft(struct ffAli *ali, DNA *needleStart, DNA *needleEnd,$/;"	f	file:
expandQuickHeap	lib/quickHeap.c	/^static void expandQuickHeap(struct quickHeap *h)$/;"	f	file:
expandRelativePath	lib/filePath.c	/^char *expandRelativePath(char *baseDir, char *relPath)$/;"	f
expandRight	jkOwnLib/fuzzyFind.c	/^static boolean expandRight(struct ffAli *ali, DNA *needleStart, DNA *needleEnd,$/;"	f	file:
expandThroughNLeft	jkOwnLib/fuzzyFind.c	/^boolean expandThroughNLeft(struct ffAli *ali, DNA *needleStart, DNA *needleEnd,$/;"	f
expandThroughNRight	jkOwnLib/fuzzyFind.c	/^boolean expandThroughNRight(struct ffAli *ali, DNA *needleStart, DNA *needleEnd,$/;"	f
expanded	hg/inc/joiner.h	/^    boolean expanded;		\/* True if an expanded set. *\/$/;"	m	struct:joinerSet
expansionFactor	inc/hash.h	/^    float expansionFactor;      \/* Expand when elCount > size*expansionFactor *\/$/;"	m	struct:hash
expdFilter	hg/inc/hui.h	/^struct expdFilter$/;"	s
expectColumnName	lib/vcf.c	370;"	d	file:
expectColumnName2	lib/vcf.c	/^static void expectColumnName2(struct vcfFile *vcff, char *exp1, char *exp2, char *words[], int ix)$/;"	f	file:
expectationToProbability	lib/blastOut.c	/^static double expectationToProbability(double e)$/;"	f	file:
expectingGot	lib/rqlParse.c	/^static void expectingGot(struct tokenizer *tkz, char *expecting, char *got)$/;"	f	file:
expireSeconds	hg/lib/web.c	/^static unsigned long expireSeconds = 0;$/;"	v	file:
expires	inc/htmlPage.h	/^    char *expires;		\/* Expiration date. *\/$/;"	m	struct:htmlCookie
exprBed	hg/inc/exprBed.h	/^struct exprBed$/;"	s
exprBedCommaIn	hg/lib/exprBed.c	/^struct exprBed *exprBedCommaIn(char **pS, struct exprBed *ret)$/;"	f
exprBedCommaOut	hg/inc/exprBed.h	51;"	d
exprBedFree	hg/lib/exprBed.c	/^void exprBedFree(struct exprBed **pEl)$/;"	f
exprBedFreeList	hg/lib/exprBed.c	/^void exprBedFreeList(struct exprBed **pList)$/;"	f
exprBedLoad	hg/lib/exprBed.c	/^struct exprBed *exprBedLoad(char **row)$/;"	f
exprBedLoadAll	hg/lib/exprBed.c	/^struct exprBed *exprBedLoadAll(char *fileName) $/;"	f
exprBedOutput	hg/lib/exprBed.c	/^void exprBedOutput(struct exprBed *el, FILE *f, char sep, char lastSep) $/;"	f
exprBedTabOut	hg/inc/exprBed.h	48;"	d
expression	lib/intExp.c	/^static double expression()$/;"	f	file:
exps	hg/inc/sage.h	/^    int *exps;	\/* index of experiments in order of aves and stdevs. *\/$/;"	m	struct:sage
extAcc	hg/inc/dvXref2.h	/^    char *extAcc;	\/* external accession *\/$/;"	m	struct:dvXref2
extFile	hg/inc/scoredRef.h	/^    unsigned extFile;	\/* Pointer to associated external file *\/$/;"	m	struct:scoredRef
extFileCreate	hg/lib/hgRelate.c	/^static char extFileCreate[] =$/;"	v	file:
extFileTable	hg/inc/targetDb.h	/^    char *extFileTable;	\/* Table in db that has .id, .path, and .size of target sequence files *\/$/;"	m	struct:targetDb
extGeneId	hg/inc/ncRna.h	/^    char *extGeneId;	\/* external gene ID *\/$/;"	m	struct:ncRna
extNamesForId	hg/lib/genePix.c	/^static struct slName *extNamesForId(struct sqlConnection *conn, int id, $/;"	f	file:
extNamesForId	hg/lib/visiGene.c	/^static struct slName *extNamesForId(struct sqlConnection *conn, int id, $/;"	f	file:
extSrc	hg/inc/dvXref2.h	/^    char *extSrc;	\/* external source (MIM for example) *\/$/;"	m	struct:dvXref2
extTable	hg/lib/hdb.c	/^    char *extTable;             \/* external file table *\/$/;"	m	struct:largeSeqFile	file:
extendExactLeft	jkOwnLib/ffSeedExtend.c	/^static void extendExactLeft(int qMax, int tMax, char **pStartQ, char **pStartT)$/;"	f	file:
extendExactRight	jkOwnLib/ffSeedExtend.c	/^static void extendExactRight(int qMax, int tMax, char **pEndQ, char **pEndT)$/;"	f	file:
extendFrameNeg	hg/lib/genePred.c	/^static void extendFrameNeg(struct genePred *gp)$/;"	f	file:
extendFramePos	hg/lib/genePred.c	/^static void extendFramePos(struct genePred *gp)$/;"	f	file:
extendGaplessLeft	jkOwnLib/ffSeedExtend.c	/^static void extendGaplessLeft(int qMax, int tMax, int maxDrop, char **pStartQ, char **pStartT)$/;"	f	file:
extendGaplessRight	jkOwnLib/ffSeedExtend.c	/^static void extendGaplessRight(int qMax, int tMax, int maxDrop, char **pEndQ, char **pEndT)$/;"	f	file:
extendHitLeft	jkOwnLib/gfBlatLib.c	/^static void extendHitLeft(int qMax, int tMax,$/;"	f	file:
extendHitRight	jkOwnLib/gfBlatLib.c	/^static void extendHitRight(int qMax, int tMax,$/;"	f	file:
extendRespect	jkOwnLib/gfInternal.c	/^static int extendRespect(int oldX, int newX)$/;"	f	file:
extendThroughN	jkOwnLib/fuzzyFind.c	/^static int extendThroughN;  \/* Can extend through blocks of N's? *\/$/;"	v	file:
extensionIntroducer	lib/gifwrite.c	/^    unsigned char extensionIntroducer, graphicControlLabel, blockSize;$/;"	m	struct:gif_gce	file:
external	hg/inc/joiner.h	/^    char *external;			\/* External name if any. *\/$/;"	m	struct:joinerSet
extra	hg/inc/bgiSnp.h	/^    char *extra;	\/* Additional information *\/$/;"	m	struct:bgiSnp
extra	hg/inc/columnInfo.h	/^    char *extra;	\/* Any extra information. *\/$/;"	m	struct:columnInfo
extra	hg/inc/jksql.h	/^    char *extra;          \/* extra info *\/$/;"	m	struct:sqlFieldInfo
extra	inc/axt.h	/^    char *extra;        \/* extra parameters *\/$/;"	m	struct:axtScoreScheme
extra	lib/localmem.c	/^    char *extra;$/;"	m	struct:lmBlock	file:
extraCgi	hg/inc/hgFind.h	/^    char *extraCgi;		  \/* Extra info to embed in CGI requests to browser. *\/$/;"	m	struct:hgPositions
extraData	lib/hacTree.c	/^    void *extraData;       \/\/ user-provided aux data for cmpF$/;"	m	struct:sortWrapper	file:
extraField	hg/inc/hui.h	/^struct extraField {$/;"	s
extraFieldsFind	hg/lib/hui.c	/^struct extraField *extraFieldsFind(struct extraField *extras, char *name)$/;"	f
extraFieldsFree	hg/lib/hui.c	/^void extraFieldsFree(struct extraField **pExtras)$/;"	f
extraFieldsGet	hg/lib/hui.c	/^struct extraField *extraFieldsGet(char *db, struct trackDb *tdb)$/;"	f
extraStyle	hg/lib/web.c	/^static char *extraStyle = NULL;$/;"	v	file:
extraUiLinks	hg/lib/hui.c	/^void extraUiLinks(char *db,struct trackDb *tdb)$/;"	f
extras	hg/inc/expRecord.h	/^    char **extras;	\/* extra things of interest, i.e. classifications *\/$/;"	m	struct:expRecord
f	hg/inc/chromGraph.h	/^    FILE *f;		\/* File handle. *\/$/;"	m	struct:chromGraphBin
f	inc/bbiFile.h	/^    FILE *f;$/;"	m	struct:bbiSumOutStream
f	inc/fof.h	/^    FILE *f;                \/* File - filled in by server. *\/$/;"	m	struct:fofBatch
f	inc/fof.h	/^    FILE *f;              \/* File. *\/$/;"	m	struct:fofPos
f	inc/nib.h	/^    FILE *f;		\/* Open file. *\/$/;"	m	struct:nibInfo
f	inc/psGfx.h	/^    FILE *f;                      \/* File to write to. *\/$/;"	m	struct:psGfx
f	inc/twoBit.h	/^    FILE *f;		\/* Open file. *\/$/;"	m	struct:twoBitFile
f	inc/xap.h	/^   FILE *f;					\/* File. *\/$/;"	m	struct:xap
f	jkOwnLib/gfOut.c	/^    FILE *f;			\/* Output file. *\/$/;"	m	struct:pslxData	file:
f	lib/annoFormatTab.c	/^    FILE *f;$/;"	m	struct:annoFormatTab	file:
f	lib/fof.c	/^    FILE *f;                     \/* Index file handle. *\/$/;"	m	struct:fof	file:
f	lib/nib.c	/^    FILE *f;		\/* File handle. *\/$/;"	m	struct:nibStream	file:
fPos	inc/gfPcrLib.h	/^    int fPos;		\/* Position of forward primer in seq. *\/$/;"	m	struct:gfPcrOutput
fPrimer	inc/gfPcrLib.h	/^    char *fPrimer;	\/* Forward primer - 15-30 bases *\/$/;"	m	struct:gfPcrInput
fPrimer	inc/gfPcrLib.h	/^    char *fPrimer;	\/* Forward primer - 15-30 bases *\/$/;"	m	struct:gfPcrOutput
fSlogScale	lib/slog.c	/^double fSlogScale = 8192.0;	\/* Convert to fixed point by multiplying by this. *\/$/;"	v
faFastBuf	lib/fa.c	/^static DNA *faFastBuf;$/;"	v	file:
faFastBufSize	lib/fa.c	/^static unsigned faFastBufSize = 0;$/;"	v	file:
faFastReadNext	lib/fa.c	/^boolean faFastReadNext(FILE *f, DNA **retDna, int *retSize, char **retName)$/;"	f
faFile	hg/inc/clonePos.h	/^    char *faFile;	\/* File with sequence. *\/$/;"	m	struct:clonePos
faFile	inc/wormdna.h	/^    FILE *faFile;$/;"	m	struct:wormCdnaIterator
faFreeFastBuf	lib/fa.c	/^void faFreeFastBuf()$/;"	f
faFromMemText	lib/fa.c	/^struct dnaSeq *faFromMemText(char *text)$/;"	f
faMixedSpeedReadNext	lib/fa.c	/^boolean faMixedSpeedReadNext(struct lineFile *lf, DNA **retDna, int *retSize, char **retName)$/;"	f
faNextSeqFromMemText	lib/fa.c	/^bioSeq *faNextSeqFromMemText(char **pText, boolean isDna)$/;"	f
faNextSeqFromMemTextRaw	lib/fa.c	/^bioSeq *faNextSeqFromMemTextRaw(char **pText)$/;"	f
faPepSpeedReadNext	lib/fa.c	/^boolean faPepSpeedReadNext(struct lineFile *lf, DNA **retDna, int *retSize, char **retName)$/;"	f
faReadAa	lib/fa.c	/^struct dnaSeq *faReadAa(char *fileName)$/;"	f
faReadAllDna	lib/fa.c	/^struct dnaSeq *faReadAllDna(char *fileName)$/;"	f
faReadAllIntoHash	lib/fa.c	/^struct hash *faReadAllIntoHash(char *fileName, enum dnaCase dnaCase)$/;"	f
faReadAllMixableInLf	lib/fa.c	/^static struct dnaSeq *faReadAllMixableInLf(struct lineFile *lf, $/;"	f	file:
faReadAllMixed	lib/fa.c	/^struct dnaSeq *faReadAllMixed(char *fileName)$/;"	f
faReadAllMixedInLf	lib/fa.c	/^struct dnaSeq *faReadAllMixedInLf(struct lineFile *lf)$/;"	f
faReadAllPep	lib/fa.c	/^struct dnaSeq *faReadAllPep(char *fileName)$/;"	f
faReadAllSeq	lib/fa.c	/^struct dnaSeq *faReadAllSeq(char *fileName, boolean isDna)$/;"	f
faReadAllSeqMixable	lib/fa.c	/^static struct dnaSeq *faReadAllSeqMixable(char *fileName, boolean isDna, boolean mixed)$/;"	f	file:
faReadDna	lib/fa.c	/^struct dnaSeq *faReadDna(char *fileName)$/;"	f
faReadMixedNext	lib/fa.c	/^boolean faReadMixedNext(FILE *f, boolean preserveCase, char *defaultName, $/;"	f
faReadNext	lib/fa.c	/^boolean faReadNext(FILE *f, char *defaultName, boolean mustStartWithComment,$/;"	f
faReadOneDnaSeq	lib/fa.c	/^struct dnaSeq *faReadOneDnaSeq(FILE *f, char *defaultName, boolean mustStartWithComment)$/;"	f
faReadSeq	lib/fa.c	/^struct dnaSeq *faReadSeq(char *fileName, boolean isDna)$/;"	f
faRecNameToFaFileName	hg/lib/hCommon.c	/^void faRecNameToFaFileName(char *dir, char *recName, char *fileName)$/;"	f
faRecNameToQacFileName	hg/lib/hCommon.c	/^void faRecNameToQacFileName(char *dir, char *recName, char *fileName)$/;"	f
faSeqFromMemText	lib/fa.c	/^bioSeq *faSeqFromMemText(char *text, boolean isDna)$/;"	f
faSeqListFromMemText	lib/fa.c	/^bioSeq *faSeqListFromMemText(char *text, boolean isDna)$/;"	f
faSeqListFromMemTextRaw	lib/fa.c	/^bioSeq *faSeqListFromMemTextRaw(char *text)$/;"	f
faSomeSpeedReadNext	lib/fa.c	/^boolean faSomeSpeedReadNext(struct lineFile *lf, DNA **retDna, int *retSize, char **retName, boolean isDna)$/;"	f
faSpeedReadNext	lib/fa.c	/^boolean faSpeedReadNext(struct lineFile *lf, DNA **retDna, int *retSize, char **retName)$/;"	f
faToDna	lib/fa.c	/^void faToDna(char *poly, int size)$/;"	f
faToProtein	lib/fa.c	/^void faToProtein(char *poly, int size)$/;"	f
faWrite	lib/fa.c	/^void faWrite(char *fileName, char *startLine, DNA *dna, int dnaSize)$/;"	f
faWriteAll	lib/fa.c	/^void faWriteAll(char *fileName, bioSeq *seqList)$/;"	f
faWriteNext	lib/fa.c	/^void faWriteNext(FILE *f, char *startLine, DNA *dna, int dnaSize)$/;"	f
facename	lib/gemfont.h	/^char	facename[32];	\/* Give it a name, don't really matter. *\/$/;"	m	struct:font_hdr
facilityNameTbl	lib/log.c	/^static struct nameVal facilityNameTbl[] =$/;"	v	typeref:struct:nameVal	file:
factor	hg/inc/tfbsCons.h	/^    char factor[65];	\/* factor  *\/$/;"	m	struct:tfbsCons
factor	hg/inc/tfbsConsFactors.h	/^    char factor[65];	\/* Factor  *\/$/;"	m	struct:tfbsConsFactors
factoryList	hg/lib/customFactory.c	/^static struct customFactory *factoryList;$/;"	v	typeref:struct:customFactory	file:
failCount	inc/rudp.h	/^    int failCount;	\/* Number of failures. *\/$/;"	m	struct:rudp
family	hg/inc/ancientRref.h	/^    char *family;	\/* repeat family *\/$/;"	m	struct:ancientRref
fastMapClumpsToBundles	jkOwnLib/gfBlatLib.c	/^static struct ssBundle *fastMapClumpsToBundles(struct genoFind *gf, struct gfClump *clumpList, bioSeq *qSeq)$/;"	f	file:
fastProber	jkOwnLib/crudeali.c	/^struct fastProber$/;"	s	file:
fastReadString	lib/common.c	/^boolean fastReadString(FILE *f, char buf[256])$/;"	f
fatPixel	lib/pscmGfx.c	/^double fatPixel(double c, double center, double fat)$/;"	f
fbAddFeature	hg/lib/featureBits.c	/^static void fbAddFeature(char *db, struct featureBits **pList, char *name,$/;"	f	file:
fbAllele	hg/inc/fbTables.h	/^    int fbAllele;	\/* ID in fbAllele table or 0 if not allele-specific *\/$/;"	m	struct:fbPhenotype
fbAllele	hg/inc/fbTables.h	/^    int fbAllele;	\/* ID in fbAllele table or 0 if not allele-specific *\/$/;"	m	struct:fbRole
fbAllele	hg/inc/fbTables.h	/^struct fbAllele$/;"	s
fbAlleleCommaIn	hg/lib/fbTables.c	/^struct fbAllele *fbAlleleCommaIn(char **pS, struct fbAllele *ret)$/;"	f
fbAlleleCommaOut	hg/inc/fbTables.h	211;"	d
fbAlleleFree	hg/lib/fbTables.c	/^void fbAlleleFree(struct fbAllele **pEl)$/;"	f
fbAlleleFreeList	hg/lib/fbTables.c	/^void fbAlleleFreeList(struct fbAllele **pList)$/;"	f
fbAlleleLoad	hg/lib/fbTables.c	/^struct fbAllele *fbAlleleLoad(char **row)$/;"	f
fbAlleleLoadAll	hg/lib/fbTables.c	/^struct fbAllele *fbAlleleLoadAll(char *fileName) $/;"	f
fbAlleleLoadAllByChar	hg/lib/fbTables.c	/^struct fbAllele *fbAlleleLoadAllByChar(char *fileName, char chopper) $/;"	f
fbAlleleLoadAllByTab	hg/inc/fbTables.h	189;"	d
fbAlleleOutput	hg/lib/fbTables.c	/^void fbAlleleOutput(struct fbAllele *el, FILE *f, char sep, char lastSep) $/;"	f
fbAlleleStaticLoad	hg/lib/fbTables.c	/^void fbAlleleStaticLoad(char **row, struct fbAllele *ret)$/;"	f
fbAlleleTabOut	hg/inc/fbTables.h	208;"	d
fbFromBed	hg/lib/featureBits.c	/^struct featureBits *fbFromBed(char *db, char *trackQualifier, struct hTableInfo *hti,$/;"	f
fbGene	hg/inc/fbTables.h	/^struct fbGene$/;"	s
fbGeneCommaIn	hg/lib/fbTables.c	/^struct fbGene *fbGeneCommaIn(char **pS, struct fbGene *ret)$/;"	f
fbGeneCommaOut	hg/inc/fbTables.h	57;"	d
fbGeneFree	hg/lib/fbTables.c	/^void fbGeneFree(struct fbGene **pEl)$/;"	f
fbGeneFreeList	hg/lib/fbTables.c	/^void fbGeneFreeList(struct fbGene **pList)$/;"	f
fbGeneLoad	hg/lib/fbTables.c	/^struct fbGene *fbGeneLoad(char **row)$/;"	f
fbGeneLoadAll	hg/lib/fbTables.c	/^struct fbGene *fbGeneLoadAll(char *fileName) $/;"	f
fbGeneLoadAllByChar	hg/lib/fbTables.c	/^struct fbGene *fbGeneLoadAllByChar(char *fileName, char chopper) $/;"	f
fbGeneLoadAllByTab	hg/inc/fbTables.h	35;"	d
fbGeneOutput	hg/lib/fbTables.c	/^void fbGeneOutput(struct fbGene *el, FILE *f, char sep, char lastSep) $/;"	f
fbGeneStaticLoad	hg/lib/fbTables.c	/^void fbGeneStaticLoad(char **row, struct fbGene *ret)$/;"	f
fbGeneTabOut	hg/inc/fbTables.h	54;"	d
fbGetRange	hg/lib/featureBits.c	/^struct featureBits *fbGetRange(char *db, char *trackQualifier, char *chrom,$/;"	f
fbGetRangeQuery	hg/lib/featureBits.c	/^struct featureBits *fbGetRangeQuery(char *db, char *trackQualifier,$/;"	f
fbGo	hg/inc/fbTables.h	/^struct fbGo$/;"	s
fbGoCommaIn	hg/lib/fbTables.c	/^struct fbGo *fbGoCommaIn(char **pS, struct fbGo *ret)$/;"	f
fbGoCommaOut	hg/inc/fbTables.h	420;"	d
fbGoFree	hg/lib/fbTables.c	/^void fbGoFree(struct fbGo **pEl)$/;"	f
fbGoFreeList	hg/lib/fbTables.c	/^void fbGoFreeList(struct fbGo **pList)$/;"	f
fbGoLoad	hg/lib/fbTables.c	/^struct fbGo *fbGoLoad(char **row)$/;"	f
fbGoLoadAll	hg/lib/fbTables.c	/^struct fbGo *fbGoLoadAll(char *fileName) $/;"	f
fbGoLoadAllByChar	hg/lib/fbTables.c	/^struct fbGo *fbGoLoadAllByChar(char *fileName, char chopper) $/;"	f
fbGoLoadAllByTab	hg/inc/fbTables.h	398;"	d
fbGoOutput	hg/lib/fbTables.c	/^void fbGoOutput(struct fbGo *el, FILE *f, char sep, char lastSep) $/;"	f
fbGoStaticLoad	hg/lib/fbTables.c	/^void fbGoStaticLoad(char **row, struct fbGo *ret)$/;"	f
fbGoTabOut	hg/inc/fbTables.h	417;"	d
fbOptions	hg/lib/featureBits.c	/^void fbOptions(char *db, char *track)$/;"	f
fbOptionsHti	hg/lib/featureBits.c	/^void fbOptionsHti(struct hTableInfo *hti)$/;"	f
fbOptionsHtiCart	hg/lib/featureBits.c	/^void fbOptionsHtiCart(struct hTableInfo *hti, struct cart *cart)$/;"	f
fbOptionsToQualifier	hg/lib/featureBits.c	/^char *fbOptionsToQualifier()$/;"	f
fbOrBits	hg/lib/featureBits.c	/^void fbOrBits(Bits *bits, int bitSize, struct featureBits *fbList, int bitOffset)$/;"	f
fbOrTableBits	hg/lib/featureBits.c	/^void fbOrTableBits(char *db, Bits *bits, char *trackQualifier, char *chrom, $/;"	f
fbOrTableBitsQuery	hg/lib/featureBits.c	/^void fbOrTableBitsQuery(char *db, Bits *bits, char *trackQualifier, char *chrom, $/;"	f
fbOrTableBitsQueryMinSize	hg/lib/featureBits.c	/^void fbOrTableBitsQueryMinSize(char *db, Bits *bits, char *trackQualifier, char *chrom, $/;"	f
fbPhenotype	hg/inc/fbTables.h	/^struct fbPhenotype$/;"	s
fbPhenotypeCommaIn	hg/lib/fbTables.c	/^struct fbPhenotype *fbPhenotypeCommaIn(char **pS, struct fbPhenotype *ret)$/;"	f
fbPhenotypeCommaOut	hg/inc/fbTables.h	368;"	d
fbPhenotypeFree	hg/lib/fbTables.c	/^void fbPhenotypeFree(struct fbPhenotype **pEl)$/;"	f
fbPhenotypeFreeList	hg/lib/fbTables.c	/^void fbPhenotypeFreeList(struct fbPhenotype **pList)$/;"	f
fbPhenotypeLoad	hg/lib/fbTables.c	/^struct fbPhenotype *fbPhenotypeLoad(char **row)$/;"	f
fbPhenotypeLoadAll	hg/lib/fbTables.c	/^struct fbPhenotype *fbPhenotypeLoadAll(char *fileName) $/;"	f
fbPhenotypeLoadAllByChar	hg/lib/fbTables.c	/^struct fbPhenotype *fbPhenotypeLoadAllByChar(char *fileName, char chopper) $/;"	f
fbPhenotypeLoadAllByTab	hg/inc/fbTables.h	346;"	d
fbPhenotypeOutput	hg/lib/fbTables.c	/^void fbPhenotypeOutput(struct fbPhenotype *el, FILE *f, char sep, char lastSep) $/;"	f
fbPhenotypeStaticLoad	hg/lib/fbTables.c	/^void fbPhenotypeStaticLoad(char **row, struct fbPhenotype *ret)$/;"	f
fbPhenotypeTabOut	hg/inc/fbTables.h	365;"	d
fbRef	hg/inc/fbTables.h	/^    int fbRef;	\/* ID in fbRef table *\/$/;"	m	struct:fbPhenotype
fbRef	hg/inc/fbTables.h	/^    int fbRef;	\/* ID in fbRef table *\/$/;"	m	struct:fbRole
fbRef	hg/inc/fbTables.h	/^struct fbRef$/;"	s
fbRefCommaIn	hg/lib/fbTables.c	/^struct fbRef *fbRefCommaIn(char **pS, struct fbRef *ret)$/;"	f
fbRefCommaOut	hg/inc/fbTables.h	262;"	d
fbRefFree	hg/lib/fbTables.c	/^void fbRefFree(struct fbRef **pEl)$/;"	f
fbRefFreeList	hg/lib/fbTables.c	/^void fbRefFreeList(struct fbRef **pList)$/;"	f
fbRefLoad	hg/lib/fbTables.c	/^struct fbRef *fbRefLoad(char **row)$/;"	f
fbRefLoadAll	hg/lib/fbTables.c	/^struct fbRef *fbRefLoadAll(char *fileName) $/;"	f
fbRefLoadAllByChar	hg/lib/fbTables.c	/^struct fbRef *fbRefLoadAllByChar(char *fileName, char chopper) $/;"	f
fbRefLoadAllByTab	hg/inc/fbTables.h	240;"	d
fbRefOutput	hg/lib/fbTables.c	/^void fbRefOutput(struct fbRef *el, FILE *f, char sep, char lastSep) $/;"	f
fbRefStaticLoad	hg/lib/fbTables.c	/^void fbRefStaticLoad(char **row, struct fbRef *ret)$/;"	f
fbRefTabOut	hg/inc/fbTables.h	259;"	d
fbRole	hg/inc/fbTables.h	/^struct fbRole$/;"	s
fbRoleCommaIn	hg/lib/fbTables.c	/^struct fbRole *fbRoleCommaIn(char **pS, struct fbRole *ret)$/;"	f
fbRoleCommaOut	hg/inc/fbTables.h	315;"	d
fbRoleFree	hg/lib/fbTables.c	/^void fbRoleFree(struct fbRole **pEl)$/;"	f
fbRoleFreeList	hg/lib/fbTables.c	/^void fbRoleFreeList(struct fbRole **pList)$/;"	f
fbRoleLoad	hg/lib/fbTables.c	/^struct fbRole *fbRoleLoad(char **row)$/;"	f
fbRoleLoadAll	hg/lib/fbTables.c	/^struct fbRole *fbRoleLoadAll(char *fileName) $/;"	f
fbRoleLoadAllByChar	hg/lib/fbTables.c	/^struct fbRole *fbRoleLoadAllByChar(char *fileName, char chopper) $/;"	f
fbRoleLoadAllByTab	hg/inc/fbTables.h	293;"	d
fbRoleOutput	hg/lib/fbTables.c	/^void fbRoleOutput(struct fbRole *el, FILE *f, char sep, char lastSep) $/;"	f
fbRoleStaticLoad	hg/lib/fbTables.c	/^void fbRoleStaticLoad(char **row, struct fbRole *ret)$/;"	f
fbRoleTabOut	hg/inc/fbTables.h	312;"	d
fbSynonym	hg/inc/fbTables.h	/^struct fbSynonym$/;"	s
fbSynonymCommaIn	hg/lib/fbTables.c	/^struct fbSynonym *fbSynonymCommaIn(char **pS, struct fbSynonym *ret)$/;"	f
fbSynonymCommaOut	hg/inc/fbTables.h	159;"	d
fbSynonymFree	hg/lib/fbTables.c	/^void fbSynonymFree(struct fbSynonym **pEl)$/;"	f
fbSynonymFreeList	hg/lib/fbTables.c	/^void fbSynonymFreeList(struct fbSynonym **pList)$/;"	f
fbSynonymLoad	hg/lib/fbTables.c	/^struct fbSynonym *fbSynonymLoad(char **row)$/;"	f
fbSynonymLoadAll	hg/lib/fbTables.c	/^struct fbSynonym *fbSynonymLoadAll(char *fileName) $/;"	f
fbSynonymLoadAllByChar	hg/lib/fbTables.c	/^struct fbSynonym *fbSynonymLoadAllByChar(char *fileName, char chopper) $/;"	f
fbSynonymLoadAllByTab	hg/inc/fbTables.h	137;"	d
fbSynonymOutput	hg/lib/fbTables.c	/^void fbSynonymOutput(struct fbSynonym *el, FILE *f, char sep, char lastSep) $/;"	f
fbSynonymStaticLoad	hg/lib/fbTables.c	/^void fbSynonymStaticLoad(char **row, struct fbSynonym *ret)$/;"	f
fbSynonymTabOut	hg/inc/fbTables.h	156;"	d
fbToBed	hg/lib/featureBits.c	/^struct bed *fbToBed(struct featureBits *fbList)$/;"	f
fbToBedOne	hg/lib/featureBits.c	/^struct bed *fbToBedOne(struct featureBits *fb)$/;"	f
fbTranscript	hg/inc/fbTables.h	/^struct fbTranscript$/;"	s
fbTranscriptCommaIn	hg/lib/fbTables.c	/^struct fbTranscript *fbTranscriptCommaIn(char **pS, struct fbTranscript *ret)$/;"	f
fbTranscriptCommaOut	hg/inc/fbTables.h	108;"	d
fbTranscriptFree	hg/lib/fbTables.c	/^void fbTranscriptFree(struct fbTranscript **pEl)$/;"	f
fbTranscriptFreeList	hg/lib/fbTables.c	/^void fbTranscriptFreeList(struct fbTranscript **pList)$/;"	f
fbTranscriptLoad	hg/lib/fbTables.c	/^struct fbTranscript *fbTranscriptLoad(char **row)$/;"	f
fbTranscriptLoadAll	hg/lib/fbTables.c	/^struct fbTranscript *fbTranscriptLoadAll(char *fileName) $/;"	f
fbTranscriptLoadAllByChar	hg/lib/fbTables.c	/^struct fbTranscript *fbTranscriptLoadAllByChar(char *fileName, char chopper) $/;"	f
fbTranscriptLoadAllByTab	hg/inc/fbTables.h	86;"	d
fbTranscriptOutput	hg/lib/fbTables.c	/^void fbTranscriptOutput(struct fbTranscript *el, FILE *f, char sep, char lastSep) $/;"	f
fbTranscriptStaticLoad	hg/lib/fbTables.c	/^void fbTranscriptStaticLoad(char **row, struct fbTranscript *ret)$/;"	f
fbTranscriptTabOut	hg/inc/fbTables.h	105;"	d
fbUnderstandTrack	hg/lib/featureBits.c	/^boolean fbUnderstandTrack(char *db, char *track)$/;"	f
fban	hg/inc/flyBase2004Xref.h	/^    char *fban;	\/* FlyBase FBan acc *\/$/;"	m	struct:flyBase2004Xref
fbgn	hg/inc/flyBase2004Xref.h	/^    char *fbgn;	\/* FlyBase FBgn acc *\/$/;"	m	struct:flyBase2004Xref
fbpp	hg/inc/flyBase2004Xref.h	/^    char *fbpp;	\/* FlyBase FBpp acc *\/$/;"	m	struct:flyBase2004Xref
fbtr	hg/inc/flyBase2004Xref.h	/^    char *fbtr;	\/* FlyBase FBtr acc *\/$/;"	m	struct:flyBase2004Xref
fcType	hg/lib/hui.c	/^    enum filterCompositeType fcType; \/\/ fctNone,fctOne,fctMulti$/;"	m	struct:_members	typeref:enum:_members::filterCompositeType	file:
fchar_width	lib/gemfont.c	/^static int fchar_width(struct font_hdr *f,unsigned char *s)$/;"	f	file:
fcoeCSMC	hg/inc/hui.h	/^   fcoeCSMC = 4,$/;"	e	enum:fishClonesOptEnum
fcoeDropDown	hg/lib/hui.c	/^void fcoeDropDown(char *var, char *curVal)$/;"	f
fcoeEnumToString	hg/lib/hui.c	/^char *fcoeEnumToString(enum fishClonesOptEnum x)$/;"	f
fcoeFHCRC	hg/inc/hui.h	/^   fcoeFHCRC = 0,$/;"	e	enum:fishClonesOptEnum
fcoeLANL	hg/inc/hui.h	/^   fcoeLANL = 5,$/;"	e	enum:fishClonesOptEnum
fcoeNCI	hg/inc/hui.h	/^   fcoeNCI = 1,$/;"	e	enum:fishClonesOptEnum
fcoeRPCI	hg/inc/hui.h	/^   fcoeRPCI = 3,$/;"	e	enum:fishClonesOptEnum
fcoeSC	hg/inc/hui.h	/^   fcoeSC = 2,$/;"	e	enum:fishClonesOptEnum
fcoeStringToEnum	hg/lib/hui.c	/^enum fishClonesOptEnum fcoeStringToEnum(char *string)$/;"	f
fcoeUCSF	hg/inc/hui.h	/^   fcoeUCSF = 6,$/;"	e	enum:fishClonesOptEnum
fctMulti	hg/lib/hui.c	/^    fctMulti=3,     \/\/ filter composite by multiselect: all, one or many$/;"	e	enum:filterCompositeType	file:
fctNone	hg/lib/hui.c	/^    fctNone=0,      \/\/ do not offer filter for this dimension$/;"	e	enum:filterCompositeType	file:
fctOne	hg/lib/hui.c	/^    fctOne=1,       \/\/ filter composite by one or all$/;"	e	enum:filterCompositeType	file:
fctOneOnly	hg/lib/hui.c	/^    fctOneOnly=2,   \/\/ filter composite by only one$/;"	e	enum:filterCompositeType	file:
fd	hg/lib/hdb.c	/^    int fd;                     \/* File handle. *\/$/;"	m	struct:largeSeqFile	file:
fd	inc/linefile.h	/^    int fd;			\/* File handle.  -1 for 'memory' files. *\/$/;"	m	struct:lineFile
fd	lib/udc.c	/^    int fd;			\/* File descriptor for file with current block. *\/$/;"	m	struct:udcBitmap	file:
fdReadBits16	lib/common.c	/^bits16 fdReadBits16(int fd, boolean isSwapped)$/;"	f
fdReadBits32	lib/common.c	/^bits32 fdReadBits32(int fd, boolean isSwapped)$/;"	f
fdReadBits64	lib/common.c	/^bits64 fdReadBits64(int fd, boolean isSwapped)$/;"	f
fdSparse	lib/udc.c	/^    int fdSparse;		\/* File descriptor for sparse data file. *\/$/;"	m	struct:udcFile	file:
fdr	hg/inc/itemConf.h	/^    float fdr;	\/* False Discovery Rate (FDR) associated with element *\/$/;"	m	struct:itemConf
feat	hg/inc/easyGene.h	/^    char *feat;	\/* Feature identifier *\/$/;"	m	struct:easyGene
featDir	lib/wormdna.c	/^static char *featDir = NULL;$/;"	v	file:
feature	hg/inc/borf.h	/^    char *feature;	\/* Feature name - Always seems to be CDSo *\/$/;"	m	struct:borf
feature	hg/inc/protFeat.h	/^    char *feature;	\/* Feature name *\/$/;"	m	struct:protFeat
feature	inc/gff.h	/^    char *feature;  \/* Type field. (Intron, CDS, etc). Not allocated here. *\/$/;"	m	struct:gffLine
feature	lib/oldGff.c	/^    char feature[64];      \/* CDS, E, I, exon, intron, ??? *\/$/;"	m	struct:gffSegLine	file:
featureBits	hg/inc/featureBits.h	/^struct featureBits$/;"	s
featureBitsFree	hg/lib/featureBits.c	/^void featureBitsFree(struct featureBits **pBits)$/;"	f
featureBitsFreeList	hg/lib/featureBits.c	/^void featureBitsFreeList(struct featureBits **pList)$/;"	f
featureClass	hg/inc/spDb.h	/^    int featureClass; \/* ID of featureClass *\/$/;"	m	struct:spFeature
featureHash	inc/gff.h	/^    struct hash *featureHash;   \/* A name only hash of gff types. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::hash
featureList	inc/gff.h	/^    struct gffFeature *featureList; \/* List of all types in file. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::gffFeature
featureName	hg/lib/wigAsciiToBinary.c	/^static char *featureName = (char *)NULL;\/* the name of this feature *\/$/;"	v	file:
featureOntologies	inc/gff3.h	/^    struct slName *featureOntologies;    \/* feature ontology URIs *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::slName
featureType	hg/inc/spDb.h	/^    int featureType;  \/* ID of featureType *\/$/;"	m	struct:spFeature
fetchCodons	hg/lib/pgSnp.c	/^struct pgCodon *fetchCodons(char *db, struct bed *gene, unsigned chrStart, unsigned chrEnd)$/;"	f
fetchData	lib/udc.c	/^    UdcDataCallback fetchData;	\/* Data fetcher *\/$/;"	m	struct:udcProtocol	file:
fetchEditPage	hg/lib/wikiTrack.c	/^struct htmlPage *fetchEditPage(char *descriptionKey)$/;"	f
fetchHub	hg/lib/hubConnect.c	/^static struct trackHub *fetchHub(char *url, char **errorMessage)$/;"	f	file:
fetchInfo	lib/udc.c	/^    UdcInfoCallback fetchInfo;	\/* Timestamp & size fetcher *\/$/;"	m	struct:udcProtocol	file:
fetchIntoBuf	lib/bwgValsOnChrom.c	/^static void fetchIntoBuf(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end,$/;"	f	file:
fetchKey	lib/crTree.c	/^    struct crTreeRange (*fetchKey)(const void *va);   \/* Given item, return key. *\/$/;"	m	struct:ciContext	typeref:struct:ciContext::fetchKey	file:
fetchMissingBits	lib/udc.c	/^static boolean fetchMissingBits(struct udcFile *file, struct udcBitmap *bits,$/;"	f	file:
fetchMissingBlocks	lib/udc.c	/^static void fetchMissingBlocks(struct udcFile *file, struct udcBitmap *bits, $/;"	f	file:
fetchOffset	lib/crTree.c	/^    bits64 (*fetchOffset)(const void *va); 		 \/* Given item, return file offset *\/$/;"	m	struct:ciContext	file:
fetchQualifiers	hg/lib/featureBits.c	/^static boolean fetchQualifiers(char *type, char *qualifier, char *extra, int *retSize)$/;"	f	file:
fetchTime	hg/lib/jksql.c	/^    long fetchTime;                     \/* cummulative time taken by row fetches for this result *\/$/;"	m	struct:sqlResult	file:
fetchTwoBitSeq	hg/lib/hdb.c	/^static struct dnaSeq *fetchTwoBitSeq(char *fileName, char *seqName, int start, int end)$/;"	f	file:
fetchWikiRawText	hg/lib/wikiTrack.c	/^char *fetchWikiRawText(char *descriptionKey)$/;"	f
fetchWikiRenderedText	hg/lib/wikiTrack.c	/^char *fetchWikiRenderedText(char *descriptionKey)$/;"	f
ff	inc/supStitch.h	/^    struct ffAli *ff;		\/* Alignment (owned by ssFfItem) *\/$/;"	m	struct:ssFfItem	typeref:struct:ssFfItem::ffAli
ff	jkOwnLib/supStitch.c	/^    struct ffAli *ff;           \/* Alignment block associated with node. *\/$/;"	m	struct:ssNode	typeref:struct:ssNode::ffAli	file:
ffAbort	jkOwnLib/fuzzyFind.c	/^static void ffAbort()$/;"	f	file:
ffAli	inc/fuzzyFind.h	/^struct ffAli$/;"	s
ffAliCount	lib/ffAli.c	/^int ffAliCount(struct ffAli *d)$/;"	f
ffAliFromSym	lib/ffAli.c	/^struct ffAli *ffAliFromSym(int symCount, char *nSym, char *hSym,$/;"	f
ffAliSort	jkOwnLib/ffAliHelp.c	/^void ffAliSort(struct ffAli **pList, int (*compare )(const void *elem1,  const void *elem2))$/;"	f
ffCalcCdnaGapPenalty	lib/ffScore.c	/^int ffCalcCdnaGapPenalty(int hGap, int nGap)$/;"	f
ffCalcGapPenalty	lib/ffScore.c	/^int ffCalcGapPenalty(int hGap, int nGap, enum ffStringency stringency)$/;"	f
ffCat	jkOwnLib/ffAliHelp.c	/^void ffCat(struct ffAli **pA, struct ffAli **pB)$/;"	f
ffCdna	inc/aliType.h	/^    ffCdna = 1,		\/* Near exact.  Tolerate long gaps in target (genomic) *\/$/;"	e	enum:ffStringency
ffCdnaGapPenalty	lib/ffScore.c	/^int ffCdnaGapPenalty(struct ffAli *left, struct ffAli *right)$/;"	f
ffCmpHitsHayFirst	jkOwnLib/ffAliHelp.c	/^int ffCmpHitsHayFirst(const void *va, const void *vb)$/;"	f
ffCmpHitsNeedleFirst	jkOwnLib/ffAliHelp.c	/^int ffCmpHitsNeedleFirst(const void *va, const void *vb)$/;"	f
ffCountGoodEnds	lib/ffAli.c	/^void ffCountGoodEnds(struct ffAli *aliList)$/;"	f
ffExact	inc/aliType.h	/^    ffExact = 0,	\/* Only an exact match will do. *\/$/;"	e	enum:ffStringency
ffExpandExactLeft	jkOwnLib/ffAliHelp.c	/^void ffExpandExactLeft(struct ffAli *ali, DNA *needleStart, DNA *hayStart)$/;"	f
ffExpandExactRight	jkOwnLib/ffAliHelp.c	/^void ffExpandExactRight(struct ffAli *ali, DNA *needleEnd, DNA *hayEnd)$/;"	f
ffFind	jkOwnLib/fuzzyFind.c	/^struct ffAli *ffFind(DNA *needleStart, DNA *needleEnd, DNA *hayStart, DNA *hayEnd,$/;"	f
ffFindAndScore	jkOwnLib/fuzzyFind.c	/^boolean ffFindAndScore(DNA *needle, int needleSize, DNA *haystack, int haySize,$/;"	f
ffFindEitherStrand	jkOwnLib/fuzzyFind.c	/^boolean ffFindEitherStrand(DNA *needle, DNA *haystack, enum ffStringency stringency,$/;"	f
ffFindEitherStrandN	jkOwnLib/fuzzyFind.c	/^boolean ffFindEitherStrandN(DNA *needle, int needleSize, DNA *haystack, int haySize,$/;"	f
ffFindExtendNmers	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *ffFindExtendNmers(char *nStart, char *nEnd, char *hStart, char *hEnd,$/;"	f	file:
ffFindGoodOligo	jkOwnLib/fuzzyFind.c	/^static boolean ffFindGoodOligo(DNA *needle, int needleLength, double maxProb, double freq[4],$/;"	f	file:
ffFreeAli	lib/ffAli.c	/^void ffFreeAli(struct ffAli **pAli)$/;"	f
ffGapPenalty	lib/ffScore.c	/^int ffGapPenalty(struct ffAli *left, struct ffAli *right, enum ffStringency stringency)$/;"	f
ffHashFuncN	jkOwnLib/ffSeedExtend.c	/^static int ffHashFuncN(char *s, int seedSize)$/;"	f	file:
ffIntronMax	lib/ffScore.c	/^int ffIntronMax = ffIntronMaxDefault;$/;"	v
ffIntronMaxDefault	inc/fuzzyFind.h	65;"	d
ffIntronOrientation	lib/ffAli.c	/^int ffIntronOrientation(struct ffAli *ali)$/;"	f
ffList	inc/supStitch.h	/^    struct ssFfItem *ffList;    \/* Item list - memory owned by bundle. *\/$/;"	m	struct:ssBundle	typeref:struct:ssBundle::ssFfItem
ffLoose	inc/aliType.h	/^    ffLoose = 3,        \/* Less exact. *\/$/;"	e	enum:ffStringency
ffMakeRightLinks	lib/ffAli.c	/^struct ffAli *ffMakeRightLinks(struct ffAli *rightMost)$/;"	f
ffMemCleanup	jkOwnLib/fuzzyFind.c	/^static void ffMemCleanup()$/;"	f	file:
ffMemInit	jkOwnLib/fuzzyFind.c	/^static void ffMemInit()$/;"	f	file:
ffMemPool	jkOwnLib/fuzzyFind.c	/^static struct lm *ffMemPool = NULL;$/;"	v	typeref:struct:lm	file:
ffMergeClose	jkOwnLib/ffAliHelp.c	/^struct ffAli *ffMergeClose(struct ffAli *aliList, $/;"	f
ffMergeHayOverlaps	jkOwnLib/ffAliHelp.c	/^struct ffAli *ffMergeHayOverlaps(struct ffAli *ali)$/;"	f
ffMergeNeedleAlis	jkOwnLib/ffAliHelp.c	/^struct ffAli *ffMergeNeedleAlis(struct ffAli *ali, boolean doFree)$/;"	f
ffNeedMem	jkOwnLib/fuzzyFind.c	/^static void *ffNeedMem(size_t size)$/;"	f	file:
ffNextBreak	jkOwnLib/gfOut.c	/^static struct ffAli *ffNextBreak(struct ffAli *ff, int maxInsert, $/;"	f	file:
ffOneIntronOrientation	lib/ffAli.c	/^int ffOneIntronOrientation(struct ffAli *left, struct ffAli *right)$/;"	f
ffRecover	jkOwnLib/fuzzyFind.c	/^static jmp_buf ffRecover;$/;"	v	file:
ffRemoveEmptyAlis	jkOwnLib/ffAliHelp.c	/^struct ffAli *ffRemoveEmptyAlis(struct ffAli *ali, boolean doFree)$/;"	f
ffRightmost	lib/ffAli.c	/^struct ffAli *ffRightmost(struct ffAli *ff)$/;"	f
ffScore	lib/ffScore.c	/^int ffScore(struct ffAli *ali, enum ffStringency stringency)$/;"	f
ffScoreCdna	lib/ffScore.c	/^int ffScoreCdna(struct ffAli *ali)$/;"	f
ffScoreIntron	jkOwnLib/ffAliHelp.c	/^int ffScoreIntron(DNA a, DNA b, DNA y, DNA z, int orientation)$/;"	f
ffScoreMatch	lib/ffScore.c	/^int ffScoreMatch(DNA *a, DNA *b, int size)$/;"	f
ffScoreProtein	lib/ffScore.c	/^int ffScoreProtein(struct ffAli *ali, enum ffStringency stringency)$/;"	f
ffScoreSomeAlis	lib/ffScore.c	/^int ffScoreSomeAlis(struct ffAli *ali, int count, enum ffStringency stringency)$/;"	f
ffScoreSomething	lib/ffScore.c	/^int ffScoreSomething(struct ffAli *ali, enum ffStringency stringency,$/;"	f
ffSeedExtInMem	jkOwnLib/ffSeedExtend.c	/^struct ssBundle *ffSeedExtInMem(struct genoFind *gf, struct dnaSeq *qSeq, Bits *qMaskBits, $/;"	f
ffShAli	lib/fuzzyShow.c	/^int ffShAli(FILE *f, struct ffAli *aliList, $/;"	f
ffShAliPart	lib/fuzzyShow.c	/^int ffShAliPart(FILE *f, struct ffAli *aliList, $/;"	f
ffShNeedle	lib/fuzzyShow.c	/^static void ffShNeedle(FILE *f, DNA *needle, int needleSize,$/;"	f	file:
ffShowAli	lib/fuzzyShow.c	/^void ffShowAli(struct ffAli *aliList, char *needleName, DNA *needle, int needleNumOffset,$/;"	f
ffShowSideBySide	lib/fuzzyShow.c	/^void ffShowSideBySide(FILE *f, struct ffAli *leftAli, DNA *needle, int needleNumOffset,$/;"	f
ffSlideIntrons	jkOwnLib/ffAliHelp.c	/^boolean ffSlideIntrons(struct ffAli *ali)$/;"	f
ffSlideOrientedIntrons	jkOwnLib/ffAliHelp.c	/^boolean ffSlideOrientedIntrons(struct ffAli *ali, int orient)$/;"	f
ffStringency	inc/aliType.h	/^enum ffStringency$/;"	g
ffTight	inc/aliType.h	/^    ffTight = 2,        \/* Near exact.  Not so tolerant of long gaps in target. *\/$/;"	e	enum:ffStringency
ffUnlink	jkOwnLib/fuzzyFind.c	/^void ffUnlink(struct ffAli **pList, struct ffAli *el)$/;"	f
fhhAvg	hg/inc/recombRateRat.h	/^    float fhhAvg;	\/* Calculated FHHxACI recombination rate *\/$/;"	m	struct:recombRateRat
fhhChr	hg/inc/stsInfoRat.h	/^    char *fhhChr;	\/* Chromosome in Genetic map *\/$/;"	m	struct:stsInfoRat
fhhChr	hg/inc/stsMapRat.h	/^    char *fhhChr;	\/* Chromosome (no chr) from FHHxACI genetic or 0 if none *\/$/;"	m	struct:stsMapRat
fhhGeneticPos	hg/inc/stsInfoRat.h	/^    float fhhGeneticPos;	\/* Position in Genetic map *\/$/;"	m	struct:stsInfoRat
fhhName	hg/inc/stsInfoRat.h	/^    char *fhhName;	\/* Name in FHH_x_ACI map *\/$/;"	m	struct:stsInfoRat
fhhPos	hg/inc/stsMapRat.h	/^    float fhhPos;	\/* Position on FHHxACI map *\/$/;"	m	struct:stsMapRat
field	hg/inc/jksql.h	/^    char *field;          \/* name of field *\/$/;"	m	struct:sqlFieldInfo
field	hg/inc/joiner.h	/^    char *field;		\/* Associated field. *\/$/;"	m	struct:joinerField
field	hg/inc/joiner.h	/^    char *field;		\/* Field. *\/$/;"	m	struct:joinerDtf
field	hg/lib/genePredReader.c	/^struct field$/;"	s	file:
fieldCount	hg/inc/customTrack.h	/^    int fieldCount;		\/* Number of fields in bed. *\/$/;"	m	struct:customTrack
fieldCount	inc/bbiFile.h	/^    bits16 fieldCount;		\/* Number of columns in bed version. *\/$/;"	m	struct:bbiFile
fieldCount	inc/vcf.h	/^    int fieldCount;		\/\/ The number of values to follow the id, or -1 if it varies$/;"	m	struct:vcfInfoDef
fieldList	hg/inc/joiner.h	/^    struct joinerField *fieldList;	\/* List of fields. *\/$/;"	m	struct:joinerSet	typeref:struct:joinerSet::joinerField
fieldList	inc/rql.h	/^    struct slName *fieldList;	\/* List of fields if any. *\/$/;"	m	struct:rqlStatement	typeref:struct:rqlStatement::slName
fieldTbl	hg/lib/genePredReader.c	/^static struct field fieldTbl[] =$/;"	v	typeref:struct:field	file:
fieldType	hg/inc/hui.h	/^enum fieldType {$/;"	g
figureOutFormat	hg/lib/chromGraphFactory.c	/^static boolean figureOutFormat(struct slName *lineList, $/;"	f	file:
figureTickSpan	hg/lib/hvGfx.c	/^static long figureTickSpan(long totalLength, int maxNumTicks)$/;"	f	file:
file	hg/inc/genomeRangeTreeFile.h	/^    FILE *file;$/;"	m	struct:genomeRangeTreeFile
file	hg/inc/wiggle.h	/^    char *file;	\/* path name to data file, one byte per value *\/$/;"	m	struct:wiggle
file	inc/gff3.h	/^    struct gff3File *file;  \/* file this record is associated with *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3File
file	inc/net.h	/^   char file[1024];	\/* Remote file name\/query string, starts with '\/' *\/$/;"	m	struct:netParsedUrl
file	inc/oldGff.h	/^    FILE *file;$/;"	m	struct:gff
file	inc/snof.h	/^    FILE *file;$/;"	m	struct:snof
file	inc/vcf.h	/^    struct vcfFile *file;	\/\/ Pointer back to parent vcfFile$/;"	m	struct:vcfRecord	typeref:struct:vcfRecord::vcfFile
file	inc/wormdna.h	/^    FILE *file;$/;"	m	struct:wormGdfCache
fileCount	lib/fof.c	/^    int fileCount;               \/* The number of files being indexed. *\/$/;"	m	struct:fof	file:
fileDate	hg/inc/fileUi.h	/^    char *fileDate;          \/\/ File Modified? date and time$/;"	m	struct:fileDb
fileDb	hg/inc/fileUi.h	/^struct fileDb$/;"	s
fileDbBackupAvailable	hg/lib/fileUi.c	/^static boolean fileDbBackupAvailable(char *db, char *dir, char *subDir)$/;"	f	file:
fileDbFree	hg/lib/fileUi.c	/^void fileDbFree(struct fileDb **pFileList)$/;"	f
fileDbGet	hg/lib/fileUi.c	/^struct fileDb *fileDbGet(char *db, char *dir, char *subDir, char *fileName)$/;"	f
fileDbReadFromBackup	hg/lib/fileUi.c	/^static struct fileDb *fileDbReadFromBackup(char *db, char *dir, char *subDir)$/;"	f	file:
fileDbSortCmp	hg/lib/fileUi.c	/^static int fileDbSortCmp(const void *va, const void *vb)$/;"	f	file:
fileDbSortList	hg/lib/fileUi.c	/^static void fileDbSortList(struct fileDb **fileList, sortOrder_t *sortOrder)$/;"	f	file:
fileDbWriteToBackup	hg/lib/fileUi.c	/^static void fileDbWriteToBackup(char *db, char *dir, char *subDir,struct fileDb *fileList)$/;"	f	file:
fileExists	lib/common.c	/^boolean fileExists(char *fileName)$/;"	f
fileFormatSearchWhiteList	hg/lib/search.c	/^struct slPair *fileFormatSearchWhiteList()$/;"	f
fileFormatSelectHtml	hg/lib/search.c	/^char *fileFormatSelectHtml(char *name, char *selected, char *extraHtml)$/;"	f
fileHead	inc/genoFind.h	/^    void (*fileHead)(struct gfOutput *out, FILE *f);$/;"	m	struct:gfOutput
fileHeaderSize	lib/cirTree.c	31;"	d	file:
fileInfo	inc/portable.h	/^struct fileInfo $/;"	s
fileIx	lib/fof.c	/^    UBYTE fileIx;   \/* Which file it's in. *\/$/;"	m	struct:fofRecord	file:
fileModTime	lib/osunix.c	/^time_t fileModTime(char *pathName)$/;"	f
fileName	hg/inc/axtInfo.h	/^    char *fileName;	\/* axt  file name  *\/$/;"	m	struct:axtInfo
fileName	hg/inc/chromGraph.h	/^    char *fileName;	\/* Name of file. *\/$/;"	m	struct:chromGraphBin
fileName	hg/inc/chromInfo.h	/^    char *fileName;	\/* Chromosome file (raw one byte per base) *\/$/;"	m	struct:chromInfo
fileName	hg/inc/fileUi.h	/^    char *fileName;          \/\/ File Name$/;"	m	struct:fileDb
fileName	hg/inc/joiner.h	/^    char *fileName;		\/* Associated file name *\/$/;"	m	struct:joiner
fileName	hg/lib/chromGraphFactory.c	/^    char *fileName;	\/* File name *\/$/;"	m	struct:labeledFile	file:
fileName	inc/bPlusTree.h	/^    char *fileName;		\/* Name of file - for error reporting. *\/$/;"	m	struct:bptFile
fileName	inc/bbiFile.h	/^    char *fileName;		\/* Name of file - for better error reporting. *\/$/;"	m	struct:bbiFile
fileName	inc/blastParse.h	/^    char *fileName;			\/* Name of file this is in. *\/$/;"	m	struct:blastFile
fileName	inc/cirTree.h	/^    char *fileName;		\/* Name of file - for error reporting. *\/$/;"	m	struct:cirTreeFile
fileName	inc/crTree.h	/^    char *fileName;		\/* Name of file - for better error reporting. *\/$/;"	m	struct:crTreeFile
fileName	inc/fof.h	/^    char *fileName;       \/* File name. *\/$/;"	m	struct:fofPos
fileName	inc/genoFind.h	/^    char *fileName;	\/* Name of file. *\/$/;"	m	struct:gfSeqSource
fileName	inc/gff.h	/^    char *fileName;             \/* Name of file (allocated here) *\/$/;"	m	struct:gffFile
fileName	inc/gff3.h	/^    char *fileName;       \/* path of file that was parsed *\/$/;"	m	struct:gff3File
fileName	inc/linefile.h	/^    char *fileName;		\/* Name of file. *\/$/;"	m	struct:lineFile
fileName	inc/mime.h	/^    char* fileName; \/* if size>=MAXPARTSIZE or data contains null *\/$/;"	m	struct:mimePart
fileName	inc/nib.h	/^    char *fileName;	\/* Name of nib file. *\/$/;"	m	struct:nibInfo
fileName	inc/oldGff.h	/^    char fileName[256];$/;"	m	struct:gff
fileName	inc/twoBit.h	/^    char *fileName;	\/* Name of this file, for error reporting. *\/$/;"	m	struct:twoBitFile
fileName	inc/twoBit.h	/^    char *fileName;                 \/* path to file *\/$/;"	m	struct:twoBitSpec
fileName	inc/xap.h	/^   char *fileName;				\/* Name of file being parsed - valid after xapParse. *\/$/;"	m	struct:xap
fileName	inc/xp.h	/^    char *fileName;			\/* File name. *\/$/;"	m	struct:xp
fileName	lib/annoFormatTab.c	/^    char *fileName;$/;"	m	struct:annoFormatTab	file:
fileName	lib/nib.c	/^    char *fileName;	\/* Name of file - allocated here. *\/$/;"	m	struct:nibStream	file:
fileName	lib/vGif.c	/^    char *fileName;	\/* Gif file name. *\/$/;"	m	struct:memGif	file:
fileName	lib/vPng.c	/^    char *fileName;	\/* PNG file name. *\/$/;"	m	struct:memPng	file:
fileNameInCacheDir	lib/udc.c	/^static char *fileNameInCacheDir(struct udcFile *file, char *fileName)$/;"	f	file:
fileNames	lib/fof.c	/^    char **fileNames;            \/* Names of files being indexed. *\/$/;"	m	struct:fof	file:
fileNext	hg/lib/genePredReader.c	/^static struct genePred *fileNext(struct genePredReader* gpr)$/;"	f	file:
fileNext	hg/lib/pslReader.c	/^static struct psl *fileNext(struct pslReader* pr)$/;"	f	file:
fileOffset	hg/lib/wigAsciiToBinary.c	/^static off_t fileOffset = 0;		\/* where are we in the binary data *\/$/;"	v	file:
fileOffset	inc/bbiFile.h	/^    bits64 fileOffset;		\/* Offset of summary in file. *\/$/;"	m	struct:bbiSummary
fileOffset	inc/bigBed.h	/^    bits64 fileOffset;		\/* File offset. *\/$/;"	m	struct:ppBed
fileOffset	inc/bwgInternal.h	/^    bits64 fileOffset;			\/* Offset of section in file. *\/$/;"	m	struct:bwgSection
fileOffset	inc/crTree.h	/^    bits64 fileOffset;	\/* Offset of item in file we are indexing. *\/$/;"	m	struct:crTreeItem
fileOffsetBegin	hg/lib/wigAsciiToBinary.c	/^static off_t fileOffsetBegin = 0;	\/* where this bin started in binary *\/$/;"	v	file:
fileOffsetSize	inc/common.h	/^struct fileOffsetSize$/;"	s
fileOffsetSizeCmp	lib/common.c	/^int fileOffsetSizeCmp(const void *va, const void *vb)$/;"	f
fileOffsetSizeFindGap	lib/common.c	/^void fileOffsetSizeFindGap(struct fileOffsetSize *list,$/;"	f
fileOffsetSizeMerge	lib/common.c	/^struct fileOffsetSize *fileOffsetSizeMerge(struct fileOffsetSize *inList)$/;"	f
fileOrUrl	inc/vcf.h	/^    char *fileOrUrl;		\/\/ VCF local file path or URL$/;"	m	struct:vcfFile
fileSearchResults	hg/lib/fileUi.c	/^int fileSearchResults(char *db, struct sqlConnection *conn, struct cart *cart, struct slPair *varValPairs, char *fileType)$/;"	f
fileSize	hg/inc/fileUi.h	/^    unsigned long fileSize;  \/\/ File size$/;"	m	struct:fileDb
fileSize	inc/cirTree.h	/^    bits64 fileSize;		\/* Total size of index file. *\/$/;"	m	struct:cirTreeFile
fileSize	inc/oldGff.h	/^    long fileSize;$/;"	m	struct:gff
fileSize	lib/osunix.c	/^off_t fileSize(char *pathname)$/;"	f
fileSize	lib/oswin9x.c	/^off_t fileSize(char *fileName)$/;"	f
fileSize	lib/udc.c	/^    bits64 fileSize;		\/* File size *\/$/;"	m	struct:udcBitmap	file:
fileSortOrderGet	hg/lib/fileUi.c	/^static sortOrder_t *fileSortOrderGet(struct cart *cart,struct trackDb *parentTdb,struct mdbObj *mdbObjs)$/;"	f	file:
fileStack	hg/inc/customPp.h	/^    struct lineFile *fileStack;  \/* Keep track of files we're included from *\/$/;"	m	struct:customPp	typeref:struct:customPp::lineFile
fileType	hg/inc/fileUi.h	/^    char *fileType;          \/\/ File Type, taken directly from .* suffix, but with .gz removed$/;"	m	struct:fileDb
fileUpdateTime	hg/lib/baseMaskCommon.c	/^static time_t fileUpdateTime(char *file)$/;"	f	file:
file_offset	hg/inc/gbSeq.h	/^    long long file_offset;	\/* byte offset of sequence in file *\/$/;"	m	struct:gbSeq
file_offset	hg/inc/snpSeq.h	/^    int file_offset;	\/* byte offset of sequence in file *\/$/;"	m	struct:snpSeq
file_size	hg/inc/gbSeq.h	/^    unsigned file_size;	\/* byte size of sequence in file *\/$/;"	m	struct:gbSeq
fileformatRegex	lib/vcf.c	/^static const char *fileformatRegex = "^##(file)?format=VCFv([0-9]+)(\\\\.([0-9]+))?$";$/;"	v	file:
files	lib/fof.c	/^    FILE **files;                \/* Possibly null file handles of files being indexed. *\/$/;"	m	struct:fof	file:
filesDownloadUi	hg/lib/fileUi.c	/^void filesDownloadUi(char *db, struct cart *cart, struct trackDb *tdb)$/;"	f
filesDownloadsPreamble	hg/lib/fileUi.c	/^static void filesDownloadsPreamble(char *db, struct trackDb *tdb)$/;"	f	file:
filesFindInDir	hg/lib/fileUi.c	/^static int filesFindInDir(char *db, struct mdbObj **pmdbFiles, struct fileDb **pFileList, char *fileType, int limit,boolean *exceededLimit)$/;"	f	file:
filesPrintTable	hg/lib/fileUi.c	/^static int filesPrintTable(char *db, struct trackDb *parentTdb, struct fileDb *fileList, sortOrder_t *sortOrder,int filterable)$/;"	f	file:
filesTab	hg/inc/search.h	/^    filesTab    = 2,$/;"	e	enum:searchTab
fillConcave	lib/mgPolygon.c	/^static void fillConcave(struct memGfx *mg, struct gfxPoly *poly, Color color)$/;"	f	file:
fillInExact	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *fillInExact(char *nStart, char *nEnd, char *hStart, char *hEnd, $/;"	f	file:
fillInMatchEtc	lib/chainToPsl.c	/^static void fillInMatchEtc(struct chain *chain, $/;"	f	file:
fillInMissing	hg/lib/hgMaf.c	/^static void fillInMissing(struct oneOrg *nativeOrg, struct oneOrg *orgList,$/;"	f	file:
fillInNewCoord	hg/lib/coordConv.c	/^void fillInNewCoord(struct coordConvRep *ccr, struct possibleCoord *pc) $/;"	f
fillInQa	hg/lib/qaSeq.c	/^static void fillInQa(char *qaName, struct hash *hash, struct qaSeq *qaList)$/;"	f	file:
fillInQac	hg/lib/qaSeq.c	/^static void fillInQac(char *qacName, struct hash *hash, struct qaSeq *qaList)$/;"	f	file:
fillList	hg/inc/chainNet.h	/^    struct cnFill *fillList;	\/* Top level fills. *\/$/;"	m	struct:chainNet	typeref:struct:chainNet::cnFill
fillUnder	inc/vGfx.h	/^    void (*fillUnder)(void *v, int x1, int y1, int x2, int y2, $/;"	m	struct:vGfx
fill_ebuf	lib/mgPolygon.c	/^int *fill_ebuf(struct gfxPoint *thread, int count, int *ebuf)$/;"	f
filledSize	hg/inc/dbRIP.h	/^    int filledSize;	\/* filled size *\/$/;"	m	struct:dbRIP
filterBoxesForFilesList	hg/lib/fileUi.c	/^static int filterBoxesForFilesList(char *db,struct mdbObj *mdbObjs,sortOrder_t *sortOrder)$/;"	f	file:
filterButtons	hg/lib/hui.c	/^void filterButtons(char *filterTypeVar, char *filterTypeVal, boolean none)$/;"	f
filterByChromCfgUi	hg/lib/hui.c	/^static void filterByChromCfgUi(struct cart *cart, struct trackDb *tdb)$/;"	f	file:
filterByClause	hg/lib/hui.c	/^char *filterByClause(filterBy_t *filterBy)$/;"	f
filterByClauseStd	hg/lib/hui.c	/^static char *filterByClauseStd(filterBy_t *filterBy)$/;"	f	file:
filterBySetCfgUi	hg/lib/hui.c	/^void filterBySetCfgUi(struct cart *cart, struct trackDb *tdb,$/;"	f
filterBySetClause	hg/lib/hui.c	/^char *filterBySetClause(filterBy_t *filterBySet)$/;"	f
filterBySetFree	hg/lib/hui.c	/^void filterBySetFree(filterBy_t **filterBySet)$/;"	f
filterBySetGet	hg/lib/hui.c	/^filterBy_t *filterBySetGet(struct trackDb *tdb, struct cart *cart, char *name)$/;"	f
filterBy_t	hg/inc/hui.h	/^} filterBy_t;$/;"	t	typeref:struct:_filterBy
filterCompositeType	hg/lib/hui.c	/^enum filterCompositeType$/;"	g	file:
filterCount	inc/vcf.h	/^    int filterCount;		\/\/ Number of ;-separated filter codes in FILTER column$/;"	m	struct:vcfRecord
filterDefs	inc/vcf.h	/^    struct vcfInfoDef *filterDefs;	\/\/ Header's definitions of FILTER column failure codes$/;"	m	struct:vcfFile	typeref:struct:vcfFile::vcfInfoDef
filterExclude	hg/inc/hui.h	/^    char *filterExclude;         \/* Identifier associated with items to exclude, NULL indicates exclude none. *\/$/;"	m	struct:expdFilter
filterInclude	hg/inc/hui.h	/^    char *filterInclude;         \/* Identifier associated with items to include, NULL indicates include all. *\/$/;"	m	struct:expdFilter
filterList	hg/inc/hui.h	/^   struct mrnaFilter *filterList;	\/* List of filters that can be applied. *\/$/;"	m	struct:mrnaUiData	typeref:struct:mrnaUiData::mrnaFilter
filterOrAltRegex	lib/vcf.c	/^static const char *filterOrAltRegex =$/;"	v	file:
filterOutMissingChains	hg/lib/liftOver.c	/^void filterOutMissingChains(struct liftOverChain **pChainList) $/;"	f
filterPoorGenes	jkOwnLib/crudeali.c	/^static int filterPoorGenes(struct crudeGene *genes, int geneCount)$/;"	f	file:
filterRegex3_3	lib/vcf.c	/^static const char *filterRegex3_3 =$/;"	v	file:
filterTypeSuffix	hg/inc/hui.h	/^   char *filterTypeSuffix; \/* cgi variable suffix that holds type of filter. *\/$/;"	m	struct:mrnaUiData
filters	hg/lib/hui.c	/^    boolean filters;          \/\/ ABCs use filterComp boxes (as upposed to check boxes$/;"	m	struct:_membersForAll	file:
filters	inc/annoStreamer.h	/^    struct annoFilter *filters;$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::annoFilter
filters	inc/vcf.h	/^    char **filters;		\/\/ Code(s) described in header for failed filters (or PASS or .)$/;"	m	struct:vcfRecord
filtersHaveRJInclude	lib/annoGrator.c	/^static boolean filtersHaveRJInclude(struct annoFilter *filters)$/;"	f	file:
findAliBetween	jkOwnLib/fuzzyFind.c	/^struct ffAli *findAliBetween(DNA *tile, int tileSize, DNA *ns, DNA *ne, DNA *hs, DNA *he)$/;"	f
findAltSpliceRange	lib/wormdna.c	/^static boolean findAltSpliceRange(char *name, struct snof *snof, FILE *f, $/;"	f	file:
findBestAli	jkOwnLib/fuzzyFind.c	/^static struct ffAli *findBestAli(DNA *ns, DNA *ne, DNA *hs, DNA *he, enum ffStringency stringency)$/;"	f	file:
findBestMatch	hg/lib/coordConv.c	/^struct possibleCoord *findBestMatch(struct coordConvRep *ccr, struct possibleCoord *pcList)$/;"	f
findBestMidPoint	hg/lib/altGraphX.c	/^static int findBestMidPoint(int s, int e, struct spaceSaver *ss, struct spliceEdge *eg, double scale)$/;"	f	file:
findBestPredecessors	lib/chainBlock.c	/^static void findBestPredecessors(struct kdTree *tree, struct kdLeaf *leafList, $/;"	f	file:
findBlockSeqPair	lib/blastParse.c	/^static boolean findBlockSeqPair(struct blastFile *bf, struct blastQuery *bq)$/;"	f	file:
findBundle	jkOwnLib/supStitch.c	/^static struct ssBundle *findBundle(struct ssBundle *list,  $/;"	f	file:
findChromContigPos	hg/lib/hgFind.c	/^boolean findChromContigPos(char *db, char *name, char **retChromName, $/;"	f
findClumpBounds	jkOwnLib/genoFind.c	/^static void findClumpBounds(struct gfClump *clump, int tileSize)$/;"	f	file:
findColorIx	inc/vGfx.h	/^    int (*findColorIx)(void *v, int r, int g, int b);$/;"	m	struct:vGfx
findCookieData	lib/cheapcgi.c	/^char *findCookieData(char *varName)$/;"	f
findCrossover	jkOwnLib/supStitch.c	/^static int findCrossover(struct ffAli *left, struct ffAli *right, int overlap, boolean isProt)$/;"	f	file:
findCrudeGenes	jkOwnLib/crudeali.c	/^static int findCrudeGenes(struct fastProber *fp, struct nt4Seq *target,$/;"	f	file:
findDownEndFrom	hg/lib/altGraphX.c	/^int findDownEndFrom(struct altGraphX *ag, int tpSplice)$/;"	f
findElemInQuickHeap	lib/quickHeap.c	/^static int findElemInQuickHeap(struct quickHeap *h, void *elem)$/;"	f	file:
findField	hg/lib/genePredReader.c	/^static struct field* findField(char *fname)$/;"	f	file:
findFromSmallerSeeds	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *findFromSmallerSeeds(char *nStart, char *nEnd, $/;"	f	file:
findFurthestLinkedEnd	hg/lib/ggGraph.c	/^static int findFurthestLinkedEnd(struct geneGraph *gg, int startIx)$/;"	f	file:
findFurthestLinkedStart	hg/lib/ggGraph.c	/^static int findFurthestLinkedStart(struct geneGraph *gg, int endIx)$/;"	f	file:
findGenePredPattern	hg/lib/hgFind.c	/^static boolean findGenePredPattern(char *db, char *pattern, struct hgPositions *hgp,$/;"	f	file:
findGenomePos	hg/lib/hgFind.c	/^struct hgPositions *findGenomePos(char *db, char *spec, char **retChromName, $/;"	f
findGenomePosWeb	hg/lib/hgFind.c	/^struct hgPositions *findGenomePosWeb(char *db, char *spec, char **retChromName, $/;"	f
findGreatestLowerBound	lib/twoBit.c	/^static int findGreatestLowerBound(int blockCount, bits32 *pos, $/;"	f	file:
findHeadPolyTMaybeMask	lib/dnautil.c	/^static int findHeadPolyTMaybeMask(DNA *dna, int size, boolean doMask,$/;"	f	file:
findHitsToTables	hg/lib/hgFind.c	/^static void findHitsToTables(char *db, struct hgFindSpec *hfs,$/;"	f	file:
findImprobableOligo	jkOwnLib/fuzzyFind.c	/^static boolean findImprobableOligo(DNA *needle, int needleLength, double maxProb, double freq[4],$/;"	f	file:
findIsoligamers	hg/lib/cutter.c	/^struct slName *findIsoligamers(struct cutter *enz, struct cutter *enzList)$/;"	f
findKGAlias	hg/lib/findKGAlias.c	/^struct kgAlias *findKGAlias(char *dataBase, char *spec, char *mode)$/;"	f
findKGProtAlias	hg/lib/findKGProtAlias.c	/^struct kgProtAlias *findKGProtAlias(char *dataBase, char *spec, char *mode)$/;"	f
findKgGenesByAlias	hg/lib/hgFind.c	/^int findKgGenesByAlias(char *db, char *spec, struct hgPositions *hgp)$/;"	f
findKgGenesByProtAlias	hg/lib/hgFind.c	/^int findKgGenesByProtAlias(char *db, char *spec, struct hgPositions *hgp)$/;"	f
findKnownGene	hg/lib/hgFind.c	/^static boolean findKnownGene(char *db, char *spec, struct hgPositions *hgp,$/;"	f	file:
findKnownGeneDescLike	hg/lib/hgFind.c	/^static boolean findKnownGeneDescLike(char *db, char *spec, struct hgPositions *hgp,$/;"	f	file:
findKnownGeneExact	hg/lib/hgFind.c	/^static boolean findKnownGeneExact(char *db, char *spec, char *geneSymbol,$/;"	f	file:
findKnownGeneFullText	hg/lib/hgFind.c	/^boolean findKnownGeneFullText(char *db, char *term,struct hgPositions *hgp)$/;"	f
findKnownGeneLike	hg/lib/hgFind.c	/^static boolean findKnownGeneLike(char *db, char *spec, struct hgPositions *hgp,$/;"	f	file:
findLastFramedExon	hg/lib/genePred.c	/^static int findLastFramedExon(struct genePred *gp)$/;"	f	file:
findLineNumber	lib/htmlPage.c	/^static int findLineNumber(char *start, char *pos)$/;"	f	file:
findLineParams	lib/pscmGfx.c	/^void findLineParams(double x1, double y1, double x2, double y2, double *m, double *b)$/;"	f
findLinesIntersection	lib/pscmGfx.c	/^void findLinesIntersection(boolean cw, double m0, double b0, double m1, double b1, $/;"	f
findLowType	lib/asParse.c	/^static struct asTypeInfo *findLowType(struct tokenizer *tkz)$/;"	f	file:
findMaxOverlap	jkOwnLib/xenbig.c	/^static void findMaxOverlap(char *a1, char *a2, int aSize, $/;"	f	file:
findMergableClusters	hg/lib/ggCluster.c	/^static struct ggMrnaCluster *findMergableClusters(struct ggMrnaCluster **pActiveClusters, $/;"	f	file:
findMostCommonEdge	hg/lib/altGraphX.c	/^int findMostCommonEdge(struct altGraphX *ag, int *edgeArray, int edgeCount)$/;"	f
findMrnaIdByName	hg/lib/ggGraph.c	/^int findMrnaIdByName(char *name, char **mrnaRefs, int count)$/;"	f
findMrnaKeys	hg/lib/hgFind.c	/^static boolean findMrnaKeys(char *db, struct hgFindSpec *hfs,$/;"	f	file:
findMrnaPos	hg/lib/hgFind.c	/^static boolean findMrnaPos(char *db, char *acc,  struct hgPositions *hgp)$/;"	f	file:
findMultipleWordHits	lib/trix.c	/^static struct trixSearchResult *findMultipleWordHits(struct trixWordResult *twrList)$/;"	f	file:
findNextGapped	lib/blastParse.c	/^static char *findNextGapped(struct blastFile *bf, struct blastQuery *bq)$/;"	f	file:
findNibSubrange	lib/nib.c	/^static char *findNibSubrange(char *fileName)$/;"	f	file:
findObType	lib/asParse.c	/^static struct asObject *findObType(struct asObject *objList, char *obName)$/;"	f	file:
findOrMakeVar	lib/htmlPage.c	/^static struct htmlFormVar *findOrMakeVar(struct htmlPage *page, char *name, $/;"	f	file:
findOrderedSpan	lib/trix.c	/^static int findOrderedSpan(struct trixWordResult *twrList,$/;"	f	file:
findOverlap	jkOwnLib/supStitch.c	/^static int findOverlap(struct cBlock *a, struct cBlock *b)$/;"	f	file:
findPosExon	hg/lib/genePred.c	/^static int findPosExon(struct genePred *gp, int pos)$/;"	f	file:
findRange	hg/lib/liftOver.c	/^static struct binElement *findRange(struct hash *chainHash, $/;"	f	file:
findRefGenes	hg/lib/hgFind.c	/^static boolean findRefGenes(char *db, struct hgFindSpec *hfs, char *spec,$/;"	f	file:
findSimilarities	hg/lib/geneSimilarities.c	/^static void findSimilarities(struct geneSimilarities *gss,$/;"	f	file:
findSlashBefore	lib/filePath.c	/^static char *findSlashBefore(char *start, char *e)$/;"	f	file:
findSnpTable	hg/lib/chromGraphFactory.c	/^static char *findSnpTable(struct sqlConnection *conn)$/;"	f	file:
findSource	jkOwnLib/genoFind.c	/^static struct gfSeqSource *findSource(struct genoFind *gf, bits32 targetPos)$/;"	f	file:
findStringEnd	lib/sqlList.c	/^static char *findStringEnd(char *start, char endC)$/;"	f	file:
findSuperTrack	hg/lib/hubConnect.c	/^static struct trackDb *findSuperTrack(struct trackDb *tdbList, char *trackName)$/;"	f	file:
findSymIx	jkOwnLib/xenbig.c	/^static int findSymIx(char *qSym, int qIx, int *retSymIx)$/;"	f	file:
findTailPolyAMaybeMask	lib/dnautil.c	/^static int findTailPolyAMaybeMask(DNA *dna, int size, boolean doMask,$/;"	f	file:
findTdbForTable	hg/lib/hdb.c	/^struct trackDb *findTdbForTable(char *db,struct trackDb *parent,char *table, struct customTrack *(*ctLookupName)(char *table))$/;"	f
findTigrGenes	hg/lib/hgFind.c	/^static void findTigrGenes(char *db, char *spec, struct hgPositions *hgp)$/;"	f	file:
findTileSize	jkOwnLib/gfBlatLib.c	/^static int findTileSize(char *line)$/;"	f	file:
findTypeForTable	hg/lib/hdb.c	/^char *findTypeForTable(char *db,struct trackDb *parent,char *table, struct customTrack *(*ctLookupName)(char *table))$/;"	f
findUnorderedSpan	lib/trix.c	/^static void findUnorderedSpan(struct trixWordResult *twrList,$/;"	f	file:
findUpStartFrom	hg/lib/altGraphX.c	/^int findUpStartFrom(struct altGraphX *ag, int fpSplice)$/;"	f
findVarData	lib/cheapcgi.c	/^static char *findVarData(char *varName)$/;"	f	file:
findVariomeItemId	hg/lib/variome.c	/^struct variome *findVariomeItemId(char *db, char *wikiItemId)$/;"	f
findWibFile	hg/lib/wigDataStream.c	/^static void findWibFile(struct wiggleDataStream *wds, char *file)$/;"	f	file:
findWikiItemByGeneSymbol	hg/lib/wikiTrack.c	/^struct wikiTrack *findWikiItemByGeneSymbol(char *db, char *geneSymbol)$/;"	f
findWikiItemByName	hg/lib/wikiTrack.c	/^struct wikiTrack *findWikiItemByName(char *db, char *name)$/;"	f
findWikiItemId	hg/lib/wikiTrack.c	/^struct wikiTrack *findWikiItemId(char *wikiItemId)$/;"	f
findWordByDelimiter	lib/common.c	/^char * findWordByDelimiter(char *word,char delimit, char *line)$/;"	f
findWordPos	lib/trix.c	/^static int findWordPos(struct trixWordResult *twrList, char *itemId)$/;"	f	file:
findWovenTiles	jkOwnLib/fuzzyFind.c	/^static struct ffAli *findWovenTiles(DNA *ns, DNA *ne, DNA *hs, DNA *he, enum ffStringency stringency)$/;"	f	file:
findYeastGenes	hg/lib/hgFind.c	/^static boolean findYeastGenes(char *db, char *pattern, struct hgPositions *hgp)$/;"	f	file:
find_pminmax	lib/mgPolygon.c	/^static void find_pminmax(struct gfxPoly *poly)$/;"	f	file:
fing	hg/inc/stanMad.h	/^    int fing;	\/* unknown *\/$/;"	m	struct:stanMad
finishCloneName	hg/lib/hCommon.c	/^static void finishCloneName(char *fragName, char *e, char cloneName[128])$/;"	f	file:
finishClusterOfOne	hg/lib/ggCluster.c	/^static struct ggMrnaCluster *finishClusterOfOne($/;"	f	file:
finishContigs	jkOwnLib/xenbig.c	/^static void finishContigs( struct dlList **pContigList, $/;"	f	file:
finishPartialTable	hg/lib/web.c	/^void finishPartialTable(int rowIx, int itemPos, int maxPerRow,$/;"	f
finished	lib/dnaLoad.c	/^    boolean finished;		\/* Set to TRUE at end. *\/$/;"	m	struct:dnaLoad	file:
first	inc/snof.h	/^    char *first;$/;"	m	struct:snof
first	lib/fof.c	/^    struct fofRecord *first;     \/* First record. *\/$/;"	m	struct:fof	typeref:struct:fof::fofRecord	file:
firstChange	hg/lib/gpFx.c	/^static int firstChange(char *string1, char *string2, int *numDifferent)$/;"	f	file:
firstCodon	hg/inc/pgSnp.h	/^    int firstCodon;$/;"	m	struct:pgCodon
firstInList	lib/subText.c	/^static struct subText *firstInList(struct subText *l, char *name)$/;"	f	file:
firstRowConsistentWithData	hg/lib/chromGraphFactory.c	/^static boolean firstRowConsistentWithData(char *line, Chopper chopper, $/;"	f	file:
firstUse	hg/inc/cartDb.h	/^    char *firstUse;	\/* First time this was used *\/$/;"	m	struct:cartDb
firstWordInFile	lib/common.c	/^char *firstWordInFile(char *fileName, char *wordBuf, int wordBufSize)$/;"	f
firstWordInLine	lib/common.c	/^char *firstWordInLine(char *line)$/;"	f
fish	hg/inc/ispyTables.h	/^struct fish$/;"	s
fishChrom	hg/inc/stsMap.h	/^    char *fishChrom;	\/* Chromosome (no chr) from FISH map or 0 if none *\/$/;"	m	struct:stsMap
fishChrom	hg/inc/stsMarker.h	/^    char *fishChrom;	\/* Chromosome (no chr) from FISH map or 0 if none *\/$/;"	m	struct:stsMarker
fishClones	hg/inc/fishClones.h	/^struct fishClones$/;"	s
fishClonesCommaIn	hg/lib/fishClones.c	/^struct fishClones *fishClonesCommaIn(char **pS, struct fishClones *ret)$/;"	f
fishClonesCommaOut	hg/inc/fishClones.h	56;"	d
fishClonesFree	hg/lib/fishClones.c	/^void fishClonesFree(struct fishClones **pEl)$/;"	f
fishClonesFreeList	hg/lib/fishClones.c	/^void fishClonesFreeList(struct fishClones **pList)$/;"	f
fishClonesLoad	hg/lib/fishClones.c	/^struct fishClones *fishClonesLoad(char **row)$/;"	f
fishClonesLoadAll	hg/lib/fishClones.c	/^struct fishClones *fishClonesLoadAll(char *fileName) $/;"	f
fishClonesOptEnum	hg/inc/hui.h	/^enum fishClonesOptEnum {$/;"	g
fishClonesOptions	hg/lib/hui.c	/^static char *fishClonesOptions[] = {$/;"	v	file:
fishClonesOutput	hg/lib/fishClones.c	/^void fishClonesOutput(struct fishClones *el, FILE *f, char sep, char lastSep) $/;"	f
fishClonesTabOut	hg/inc/fishClones.h	53;"	d
fishCommaIn	hg/lib/ispyTables.c	/^struct fish *fishCommaIn(char **pS, struct fish *ret)$/;"	f
fishCommaOut	hg/inc/ispyTables.h	1000;"	d
fishFree	hg/lib/ispyTables.c	/^void fishFree(struct fish **pEl)$/;"	f
fishFreeList	hg/lib/ispyTables.c	/^void fishFreeList(struct fish **pList)$/;"	f
fishLoadAll	hg/lib/ispyTables.c	/^struct fish *fishLoadAll(char *fileName) $/;"	f
fishLoadAllByChar	hg/lib/ispyTables.c	/^struct fish *fishLoadAllByChar(char *fileName, char chopper) $/;"	f
fishLoadAllByTab	hg/inc/ispyTables.h	953;"	d
fishLoadByQuery	hg/lib/ispyTables.c	/^struct fish *fishLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
fishLoadWithNull	hg/lib/ispyTables.c	/^struct fish *fishLoadWithNull(char **row)$/;"	f
fishOutput	hg/lib/ispyTables.c	/^void fishOutput(struct fish *el, FILE *f, char sep, char lastSep) $/;"	f
fishSaveToDb	hg/lib/ispyTables.c	/^void fishSaveToDb(struct sqlConnection *conn, struct fish *el, char *tableName, int updateSize)$/;"	f
fishSaveToDbEscaped	hg/lib/ispyTables.c	/^void fishSaveToDbEscaped(struct sqlConnection *conn, struct fish *el, char *tableName, int updateSize)$/;"	f
fishStaticLoadWithNull	hg/lib/ispyTables.c	/^void fishStaticLoadWithNull(char **row, struct fish *ret)$/;"	f
fishTabOut	hg/inc/ispyTables.h	997;"	d
fitField	hg/lib/hdb.c	/^static boolean fitField(struct hash *hash, char *fieldName,$/;"	f	file:
fitFields	hg/lib/hdb.c	/^static boolean fitFields(struct hash *hash, char *chrom, char *start, char *end,$/;"	f	file:
fivePrime	hg/inc/atomDb.h	/^    char *fivePrime;	\/* atom on the 5' end *\/$/;"	m	struct:atom
fixBlockSize	jkOwnLib/patSpace.c	/^static void fixBlockSize(struct blockPos *bp, int blockIx)$/;"	f	file:
fixDirectionAndOffsets	lib/oldGff.c	/^static void fixDirectionAndOffsets(struct gffGene *gene, char *dna, long dnaSize, int newStart)$/;"	f	file:
fixLargeMrnaInserts	hg/lib/ggGraph.c	/^void fixLargeMrnaInserts(struct geneGraph *gg)$/;"	f
fixSinglePos	hg/lib/hgFind.c	/^static void fixSinglePos(struct hgPositions *hgp)$/;"	f	file:
fixStopFrame	hg/lib/genePred.c	/^static void fixStopFrame(struct genePred *gp)$/;"	f	file:
fixedSize	inc/asParse.h	/^    int fixedSize;		   \/* 0 if not fixed size, otherwise size of list. *\/$/;"	m	struct:asColumn
fixedStart	hg/lib/wigAsciiToBinary.c	/^static unsigned long long fixedStart = 0;	\/* for fixedStep data *\/$/;"	v	file:
fixedStepPacked	inc/bwgInternal.h	/^    struct bwgFixedStepPacked *fixedStepPacked;		\/* An array *\/$/;"	m	union:bwgItem	typeref:struct:bwgItem::bwgFixedStepPacked
fixedStepSectionToIntervals	lib/metaWig.c	/^static void fixedStepSectionToIntervals(struct bwgSection *section, struct lm *lm,$/;"	f	file:
fixupChildRefs	lib/dtdParse.c	/^static void fixupChildRefs(struct dtdElement *elList, struct hash *elHash, char *fileName)$/;"	f	file:
flag	hg/inc/samAlignment.h	/^    unsigned short flag;	\/* Flags.  0x10 set for reverse complement.  See SAM docs for others. *\/$/;"	m	struct:samAlignment
flag	hg/inc/stanMad.h	/^    int flag;	\/* A user defined field which identifies spots which are visually of low quality. The value 0 is good all other values represent poor quality spots. *\/$/;"	m	struct:stanMad
flagA	inc/diGraph.h	/^    bool flagA;         \/* Flag used in rangeGraph algorithms. *\/$/;"	m	struct:dgNode
flagB	inc/diGraph.h	/^    bool flagB;         \/* Currently unused flag. *\/$/;"	m	struct:dgNode
flagOverlapSpanData	hg/inc/wiggle.h	/^    boolean flagOverlapSpanData;	\/* verify span data doesn't overlap *\/$/;"	m	struct:wigEncodeOptions
flagOverlapSpanData	hg/lib/wigAsciiToBinary.c	/^static boolean flagOverlapSpanData = FALSE;\/\/ verify span data doesn't overlap$/;"	v	file:
flags	inc/options.h	/^    unsigned flags;  \/* Flags for option, specifies types *\/$/;"	m	struct:optionSpec
flags	lib/gemfont.h	/^WORD	flags;		\/* Just set to zero.  Half-assed intel swap if otherwise. *\/$/;"	m	struct:font_hdr
flags	lib/gifcodes.h	/^	unsigned char flags;$/;"	m	struct:gif_image
flags	lib/gifwrite.c	/^    unsigned char flags;$/;"	m	struct:gif_gce	file:
flank1	hg/inc/jaxQTL3.h	/^    char *flank1;	\/* flanking marker 1 *\/$/;"	m	struct:jaxQTL3
flank2	hg/inc/jaxQTL3.h	/^    char *flank2;	\/* flanking marker 2 *\/$/;"	m	struct:jaxQTL3
fld	hg/lib/genePredReader.c	/^    char *fld;$/;"	m	struct:field	file:
fldIdx	hg/lib/genePredReader.c	/^    int fldIdx;$/;"	m	struct:field	file:
floatArrayToDoubleArray	hg/lib/microarray.c	/^static double *floatArrayToDoubleArray(int count, float *array)$/;"	f	file:
floatScore	hg/inc/bed5FloatScore.h	/^    float floatScore;	\/* Floating point score. *\/$/;"	m	struct:bed5FloatScore
flush	lib/gifcomp.c	/^static void flush(size_t n)$/;"	f	file:
flushPosString	hg/lib/mafGene.c	/^static void flushPosString(struct speciesInfo *si)$/;"	f	file:
flyBase2004Xref	hg/inc/flyBase2004Xref.h	/^struct flyBase2004Xref$/;"	s
flyBase2004XrefCommaIn	hg/lib/flyBase2004Xref.c	/^struct flyBase2004Xref *flyBase2004XrefCommaIn(char **pS, struct flyBase2004Xref *ret)$/;"	f
flyBase2004XrefCommaOut	hg/inc/flyBase2004Xref.h	62;"	d
flyBase2004XrefFree	hg/lib/flyBase2004Xref.c	/^void flyBase2004XrefFree(struct flyBase2004Xref **pEl)$/;"	f
flyBase2004XrefFreeList	hg/lib/flyBase2004Xref.c	/^void flyBase2004XrefFreeList(struct flyBase2004Xref **pList)$/;"	f
flyBase2004XrefLoad	hg/lib/flyBase2004Xref.c	/^struct flyBase2004Xref *flyBase2004XrefLoad(char **row)$/;"	f
flyBase2004XrefLoadAll	hg/lib/flyBase2004Xref.c	/^struct flyBase2004Xref *flyBase2004XrefLoadAll(char *fileName) $/;"	f
flyBase2004XrefLoadAllByChar	hg/lib/flyBase2004Xref.c	/^struct flyBase2004Xref *flyBase2004XrefLoadAllByChar(char *fileName, char chopper) $/;"	f
flyBase2004XrefLoadAllByTab	hg/inc/flyBase2004Xref.h	40;"	d
flyBase2004XrefOutput	hg/lib/flyBase2004Xref.c	/^void flyBase2004XrefOutput(struct flyBase2004Xref *el, FILE *f, char sep, char lastSep) $/;"	f
flyBase2004XrefStaticLoad	hg/lib/flyBase2004Xref.c	/^void flyBase2004XrefStaticLoad(char **row, struct flyBase2004Xref *ret)$/;"	f
flyBase2004XrefTabOut	hg/inc/flyBase2004Xref.h	59;"	d
flyBaseId	hg/inc/bdgpExprLink.h	/^    char *flyBaseId;	\/* FlyBase gene ID *\/$/;"	m	struct:bdgpExprLink
flyBaseId	hg/inc/bdgpGeneInfo.h	/^    char *flyBaseId;	\/* FlyBase FBgn ID *\/$/;"	m	struct:bdgpGeneInfo
flyBaseId	hg/inc/bdgpSwissProt.h	/^    char *flyBaseId;	\/* FlyBase FBgn ID *\/$/;"	m	struct:bdgpSwissProt
flyBaseId	hg/inc/flyBaseSwissProt.h	/^    char *flyBaseId;	\/* FlyBase FBgn ID *\/$/;"	m	struct:flyBaseSwissProt
flyBaseSwissProt	hg/inc/flyBaseSwissProt.h	/^struct flyBaseSwissProt$/;"	s
flyBaseSwissProtCommaIn	hg/lib/flyBaseSwissProt.c	/^struct flyBaseSwissProt *flyBaseSwissProtCommaIn(char **pS, struct flyBaseSwissProt *ret)$/;"	f
flyBaseSwissProtCommaOut	hg/inc/flyBaseSwissProt.h	58;"	d
flyBaseSwissProtFree	hg/lib/flyBaseSwissProt.c	/^void flyBaseSwissProtFree(struct flyBaseSwissProt **pEl)$/;"	f
flyBaseSwissProtFreeList	hg/lib/flyBaseSwissProt.c	/^void flyBaseSwissProtFreeList(struct flyBaseSwissProt **pList)$/;"	f
flyBaseSwissProtLoad	hg/lib/flyBaseSwissProt.c	/^struct flyBaseSwissProt *flyBaseSwissProtLoad(char **row)$/;"	f
flyBaseSwissProtLoadAll	hg/lib/flyBaseSwissProt.c	/^struct flyBaseSwissProt *flyBaseSwissProtLoadAll(char *fileName) $/;"	f
flyBaseSwissProtLoadAllByChar	hg/lib/flyBaseSwissProt.c	/^struct flyBaseSwissProt *flyBaseSwissProtLoadAllByChar(char *fileName, char chopper) $/;"	f
flyBaseSwissProtLoadAllByTab	hg/inc/flyBaseSwissProt.h	36;"	d
flyBaseSwissProtOutput	hg/lib/flyBaseSwissProt.c	/^void flyBaseSwissProtOutput(struct flyBaseSwissProt *el, FILE *f, char sep, char lastSep) $/;"	f
flyBaseSwissProtStaticLoad	hg/lib/flyBaseSwissProt.c	/^void flyBaseSwissProtStaticLoad(char **row, struct flyBaseSwissProt *ret)$/;"	f
flyBaseSwissProtTabOut	hg/inc/flyBaseSwissProt.h	55;"	d
flyCdnaSeq	lib/flydna.c	/^boolean flyCdnaSeq(char *name, struct dnaSeq **retDna, struct wormCdnaInfo *retInfo)$/;"	f
flyChromNames	lib/flydna.c	/^void flyChromNames(char ***retNames, int *retNameCount)$/;"	f
flyFaCommentIntoInfo	lib/flydna.c	/^void flyFaCommentIntoInfo(char *faComment, struct wormCdnaInfo *retInfo)$/;"	f
flyFeaturesDir	lib/flydna.c	/^char *flyFeaturesDir()$/;"	f
flyFreeNt4Genome	lib/flydna.c	/^void flyFreeNt4Genome(struct nt4Seq ***pNt4Seq)$/;"	f
flyLoadNt4Genome	lib/flydna.c	/^void flyLoadNt4Genome(struct nt4Seq ***retNt4Seq, int *retNt4Count)$/;"	f
flyOpenGoodAli	lib/flydna.c	/^FILE *flyOpenGoodAli()$/;"	f
flyreg	hg/inc/flyreg.h	/^struct flyreg$/;"	s
flyreg2	hg/inc/flyreg2.h	/^struct flyreg2$/;"	s
flyreg2CommaIn	hg/lib/flyreg2.c	/^struct flyreg2 *flyreg2CommaIn(char **pS, struct flyreg2 *ret)$/;"	f
flyreg2CommaOut	hg/inc/flyreg2.h	61;"	d
flyreg2Free	hg/lib/flyreg2.c	/^void flyreg2Free(struct flyreg2 **pEl)$/;"	f
flyreg2FreeList	hg/lib/flyreg2.c	/^void flyreg2FreeList(struct flyreg2 **pList)$/;"	f
flyreg2Load	hg/lib/flyreg2.c	/^struct flyreg2 *flyreg2Load(char **row)$/;"	f
flyreg2LoadAll	hg/lib/flyreg2.c	/^struct flyreg2 *flyreg2LoadAll(char *fileName) $/;"	f
flyreg2LoadAllByChar	hg/lib/flyreg2.c	/^struct flyreg2 *flyreg2LoadAllByChar(char *fileName, char chopper) $/;"	f
flyreg2LoadAllByTab	hg/inc/flyreg2.h	39;"	d
flyreg2Output	hg/lib/flyreg2.c	/^void flyreg2Output(struct flyreg2 *el, FILE *f, char sep, char lastSep) $/;"	f
flyreg2StaticLoad	hg/lib/flyreg2.c	/^void flyreg2StaticLoad(char **row, struct flyreg2 *ret)$/;"	f
flyreg2TabOut	hg/inc/flyreg2.h	58;"	d
flyregCommaIn	hg/lib/flyreg.c	/^struct flyreg *flyregCommaIn(char **pS, struct flyreg *ret)$/;"	f
flyregCommaOut	hg/inc/flyreg.h	60;"	d
flyregFree	hg/lib/flyreg.c	/^void flyregFree(struct flyreg **pEl)$/;"	f
flyregFreeList	hg/lib/flyreg.c	/^void flyregFreeList(struct flyreg **pList)$/;"	f
flyregLoad	hg/lib/flyreg.c	/^struct flyreg *flyregLoad(char **row)$/;"	f
flyregLoadAll	hg/lib/flyreg.c	/^struct flyreg *flyregLoadAll(char *fileName) $/;"	f
flyregLoadAllByChar	hg/lib/flyreg.c	/^struct flyreg *flyregLoadAllByChar(char *fileName, char chopper) $/;"	f
flyregLoadAllByTab	hg/inc/flyreg.h	38;"	d
flyregOutput	hg/lib/flyreg.c	/^void flyregOutput(struct flyreg *el, FILE *f, char sep, char lastSep) $/;"	f
flyregStaticLoad	hg/lib/flyreg.c	/^void flyregStaticLoad(char **row, struct flyreg *ret)$/;"	f
flyregTabOut	hg/inc/flyreg.h	57;"	d
fmtParam	hg/lib/lsSnpPdbChimera.c	/^static char *fmtParam(char sep, char *name, char *val)$/;"	f	file:
fnstring_width	lib/gemfont.c	/^long fnstring_width(struct font_hdr *f, unsigned char *s, int n)$/;"	f
fnt_dta	lib/gemfont.h	/^UBYTE	*fnt_dta;	\/* On disk byte offset to beginning of bitmap. *\/$/;"	m	struct:font_hdr
fof	lib/fof.c	/^struct fof$/;"	s	file:
fofBatch	inc/fof.h	/^struct fofBatch$/;"	s
fofBatchFind	lib/fof.c	/^struct fofBatch *fofBatchFind(struct fof *fof, struct fofBatch *list)$/;"	f
fofClose	lib/fof.c	/^void fofClose(struct fof **pFof)$/;"	f
fofCmp	lib/fof.c	/^static int fofCmp(char *prefix, char *name, int maxSize, boolean isPrefix)$/;"	f	file:
fofElementCount	lib/fof.c	/^int fofElementCount(struct fof *fof)$/;"	f
fofFetch	lib/fof.c	/^void *fofFetch(struct fof *fof, char *name, int *retSize)$/;"	f
fofFetchString	lib/fof.c	/^char *fofFetchString(struct fof *fof, char *name, int *retSize)$/;"	f
fofFind	lib/fof.c	/^boolean fofFind(struct fof *fof, char *name, struct fofPos *retPos)$/;"	f
fofFindFirst	lib/fof.c	/^boolean fofFindFirst(struct fof *fof, char *prefix, $/;"	f
fofMake	lib/fof.c	/^void fofMake(char *inFiles[], int inCount, char *outName, $/;"	f
fofOpen	lib/fof.c	/^struct fof *fofOpen(char *fofName, char *fofDir)$/;"	f
fofPos	inc/fof.h	/^struct fofPos$/;"	s
fofRecList	lib/fof.c	/^struct fofRecList$/;"	s	file:
fofRecToPos	lib/fof.c	/^static void fofRecToPos(struct fof *fof, int ix, struct fofRecord *rec, struct fofPos *pos)$/;"	f	file:
fofRecord	lib/fof.c	/^struct fofRecord$/;"	s	file:
fofSearch	lib/fof.c	/^static boolean fofSearch(struct fof *fof, char *name, int nameSize, $/;"	f	file:
fofSig	inc/sig.h	47;"	d
fold	hg/inc/rnaFold.h	/^    char *fold;	\/* Parenthesis and .'s that describe folding *\/$/;"	m	struct:rnaFold
fold2pairingList	lib/rnautil.c	/^void fold2pairingList(char *fold, int len, int **p2pairList)$/;"	f
foldInExtras	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *foldInExtras(struct dnaSeq *qSeq, struct dnaSeq *tSeq,$/;"	f	file:
followUp	hg/inc/ispyTables.h	/^struct followUp$/;"	s
followUpCommaIn	hg/lib/ispyTables.c	/^struct followUp *followUpCommaIn(char **pS, struct followUp *ret)$/;"	f
followUpCommaOut	hg/inc/ispyTables.h	506;"	d
followUpFree	hg/lib/ispyTables.c	/^void followUpFree(struct followUp **pEl)$/;"	f
followUpFreeList	hg/lib/ispyTables.c	/^void followUpFreeList(struct followUp **pList)$/;"	f
followUpLoadAll	hg/lib/ispyTables.c	/^struct followUp *followUpLoadAll(char *fileName) $/;"	f
followUpLoadAllByChar	hg/lib/ispyTables.c	/^struct followUp *followUpLoadAllByChar(char *fileName, char chopper) $/;"	f
followUpLoadAllByTab	hg/inc/ispyTables.h	459;"	d
followUpLoadByQuery	hg/lib/ispyTables.c	/^struct followUp *followUpLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
followUpLoadWithNull	hg/lib/ispyTables.c	/^struct followUp *followUpLoadWithNull(char **row)$/;"	f
followUpOutput	hg/lib/ispyTables.c	/^void followUpOutput(struct followUp *el, FILE *f, char sep, char lastSep) $/;"	f
followUpSaveToDb	hg/lib/ispyTables.c	/^void followUpSaveToDb(struct sqlConnection *conn, struct followUp *el, char *tableName, int updateSize)$/;"	f
followUpSaveToDbEscaped	hg/lib/ispyTables.c	/^void followUpSaveToDbEscaped(struct sqlConnection *conn, struct followUp *el, char *tableName, int updateSize)$/;"	f
followUpStaticLoadWithNull	hg/lib/ispyTables.c	/^void followUpStaticLoadWithNull(char **row, struct followUp *ret)$/;"	f
followUpTabOut	hg/inc/ispyTables.h	503;"	d
font	hg/inc/genoLay.h	/^    MgFont *font;			\/* Font used for labels *\/$/;"	m	struct:genoLay
font	hg/inc/trackLayout.h	/^    MgFont *font;		\/* What font to use. *\/$/;"	m	struct:trackLayout
fontHeight	hg/inc/trackLayout.h	/^    int fontHeight;		\/* Height of font. *\/$/;"	m	struct:trackLayout
fontHeight	inc/psGfx.h	/^    double fontHeight;		  \/* Height of current font. *\/$/;"	m	struct:psGfx
font_cel_height	lib/gemfont.c	/^int font_cel_height(struct font_hdr *f)$/;"	f
font_hdr	lib/gemfont.h	/^struct	font_hdr {$/;"	s
font_line_height	lib/gemfont.c	/^int font_line_height(struct font_hdr *f)$/;"	f
forCgi	inc/portable.h	/^	char forCgi[128];$/;"	m	struct:tempName
forHtml	inc/portable.h	/^	char forHtml[128];$/;"	m	struct:tempName
forceMonotonic	jkOwnLib/supStitch.c	/^static struct ffAli *forceMonotonic(struct ffAli *aliList,$/;"	f	file:
formParseVars	lib/htmlPage.c	/^static struct htmlFormVar *formParseVars(struct htmlPage *page, struct htmlForm *form)$/;"	f	file:
format	inc/vcf.h	/^    char *format;		\/\/ Optional column containing ordered list of genotype components$/;"	m	struct:vcfRecord
formatDays	hg/lib/visiGene.c	/^static void formatDays(double days, char out[TIME_FORMAT_SIZE])$/;"	f	file:
formatOne	inc/annoFormatter.h	/^    void (*formatOne)(struct annoFormatter *self);$/;"	m	struct:annoFormatter
formatSrcDb	hg/lib/ccdsInfo.c	/^static char *formatSrcDb(enum ccdsInfoSrcDb srcDb)$/;"	f	file:
formatTime	hg/lib/baseMaskCommon.c	/^static int formatTime(char *buf, int bufSize, char *prefix, time_t time, char *suffix)$/;"	f	file:
formatter	lib/annoFormatTab.c	/^    struct annoFormatter formatter;$/;"	m	struct:annoFormatTab	typeref:struct:annoFormatTab::annoFormatter	file:
formatters	inc/annoGratorQuery.h	/^    struct annoFormatter *formatters;	\/\/ Writers of output collected from primary & intg's$/;"	m	struct:annoGratorQuery	typeref:struct:annoGratorQuery::annoFormatter
forms	inc/htmlPage.h	/^    struct htmlForm *forms;		\/* List of all forms. *\/$/;"	m	struct:htmlPage	typeref:struct:htmlPage::htmlForm
forward	hg/inc/hui.h	/^    boolean* forward;    \/\/ Always order in trackDb.ra but value of cart! (eg: -,+,-)$/;"	m	struct:_sortOrder
forwardMergeTwo	jkOwnLib/xenbig.c	/^static struct contig *forwardMergeTwo(struct contig *a, struct contig *b)$/;"	f	file:
forwardPrimer	hg/inc/dbRIP.h	/^    char *forwardPrimer;	\/* forward Primer *\/$/;"	m	struct:dbRIP
forwardPrimer	hg/inc/vntr.h	/^    char *forwardPrimer;	\/* Forward PCR primer sequence (or Design_Failed) *\/$/;"	m	struct:vntr
fosEndPairs	hg/inc/fosEndPairs.h	/^struct fosEndPairs$/;"	s
fosEndPairsCommaIn	hg/lib/fosEndPairs.c	/^struct fosEndPairs *fosEndPairsCommaIn(char **pS, struct fosEndPairs *ret)$/;"	f
fosEndPairsCommaOut	hg/inc/fosEndPairs.h	57;"	d
fosEndPairsFree	hg/lib/fosEndPairs.c	/^void fosEndPairsFree(struct fosEndPairs **pEl)$/;"	f
fosEndPairsFreeList	hg/lib/fosEndPairs.c	/^void fosEndPairsFreeList(struct fosEndPairs **pList)$/;"	f
fosEndPairsLoad	hg/lib/fosEndPairs.c	/^struct fosEndPairs *fosEndPairsLoad(char **row)$/;"	f
fosEndPairsLoadAll	hg/lib/fosEndPairs.c	/^struct fosEndPairs *fosEndPairsLoadAll(char *fileName) $/;"	f
fosEndPairsLoadWhere	hg/lib/fosEndPairs.c	/^struct fosEndPairs *fosEndPairsLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
fosEndPairsOutput	hg/lib/fosEndPairs.c	/^void fosEndPairsOutput(struct fosEndPairs *el, FILE *f, char sep, char lastSep) $/;"	f
fosEndPairsTabOut	hg/inc/fosEndPairs.h	54;"	d
foundInPop	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned char foundInPop[11];	\/* Got data for each of the 11 Phase III populations? *\/$/;"	m	struct:hapmapPhaseIIISummary
fourState	hg/inc/trackDb.h	/^    int fourState; \/\/ hgTrackUi subtracks use 4 state checkboxes (checked\/un by enabled\/dis)$/;"	m	struct:tdbExtras
fourStateChecked	hg/inc/hui.h	1217;"	d
fourStateEnabled	hg/inc/hui.h	1218;"	d
fourStateVisible	hg/inc/hui.h	1219;"	d
fpid	hg/inc/flyreg2.h	/^    unsigned fpid;	\/* Footprint ID -- stable ID across versions *\/$/;"	m	struct:flyreg2
fr3pcc	hg/inc/llaInfo.h	/^    float fr3pcc;	\/* 3-prime forward+reverse primer cross complementarity *\/$/;"	m	struct:llaInfo
frForStrand	hg/lib/featureBits.c	/^char frForStrand(char strand)$/;"	f
fracMatch	hg/inc/celeraDupPositive.h	/^    float fracMatch;	\/* fraction of matching bases *\/$/;"	m	struct:celeraDupPositive
fracMatch	hg/inc/genomicDups.h	/^    float fracMatch;	\/* fraction of matching bases *\/$/;"	m	struct:genomicDups
fracMatch	hg/inc/genomicSuperDups.h	/^    float fracMatch;	\/* fraction of matching bases *\/$/;"	m	struct:genomicSuperDups
fracMatchIndel	hg/inc/genomicSuperDups.h	/^    float fracMatchIndel;	\/* fraction of matching bases with indels *\/$/;"	m	struct:genomicSuperDups
frag	hg/inc/agpFrag.h	/^    char *frag;	\/* which fragment *\/$/;"	m	struct:agpFrag
frag	hg/inc/glDbRep.h	/^    char *frag;	\/* Fragment name *\/$/;"	m	struct:gl
fragEnd	hg/inc/agpFrag.h	/^    unsigned fragEnd;	\/* end position in frag *\/$/;"	m	struct:agpFrag
fragStart	hg/inc/agpFrag.h	/^    unsigned fragStart;	\/* start position in frag *\/$/;"	m	struct:agpFrag
fragToCloneName	hg/lib/hCommon.c	/^void fragToCloneName(char *fragName, char cloneName[128])$/;"	f
fragToCloneVerName	hg/lib/hCommon.c	/^void fragToCloneVerName(char *fragName, char cloneVerName[128])$/;"	f
frame	hg/inc/borf.h	/^    char frame[4];	\/* Seems to be +1, +2, +3 or -1, -2, -3 *\/$/;"	m	struct:borf
frame	hg/inc/easyGene.h	/^    unsigned frame;	\/* Frame *\/$/;"	m	struct:easyGene
frame	hg/inc/geneCheck.h	/^    char frame[13];	\/* frame status: ok, bad, noCDS, mismatch, discontig *\/$/;"	m	struct:geneCheck
frame	hg/inc/mafFrames.h	/^    unsigned char frame;	\/* frame (0,1,2) for first base(+) or last bast(-) *\/$/;"	m	struct:mafFrames
frame	hg/inc/snp125CodingCoordless.h	/^    enum snp125CodingCoordlessFrame frame;	\/* Frame of transcript's codon modified by SNP *\/$/;"	m	struct:snp125CodingCoordless	typeref:enum:snp125CodingCoordless::snp125CodingCoordlessFrame
frame	hg/lib/mafGene.c	/^    int frame;$/;"	m	struct:exonInfo	file:
frame	inc/axt.h	/^    int frame;			\/* If non-zero then translation frame. *\/$/;"	m	struct:axt
frame	inc/gff.h	/^    char frame;     \/* Frame feature is in. 1, 2, 3, or . *\/$/;"	m	struct:gffLine
frame	inc/oldGff.h	/^    int frame;$/;"	m	struct:gffGene
frame	inc/oldGff.h	/^    int frame;$/;"	m	struct:gffSegment
frame	lib/oldGff.c	/^    char frame[4];     \/* 0, 1, 2, or . *\/$/;"	m	struct:gffSegLine	file:
frameStrand	hg/lib/mafGene.c	/^    char frameStrand;$/;"	m	struct:speciesInfo	file:
frameToPhase	hg/lib/genePred.c	/^static char frameToPhase(int frame)$/;"	f	file:
frameshift_variant	hg/inc/soterm.h	/^    frameshift_variant=1589,$/;"	e	enum:__anon11
frcc	hg/inc/llaInfo.h	/^    float frcc;	\/* Forward+reverse primer cross complementarity *\/$/;"	m	struct:llaInfo
free	inc/memalloc.h	/^    void (*free)(void *vpt);$/;"	m	struct:memHandler
free	lib/localmem.c	/^    char *free;$/;"	m	struct:lmBlock	file:
freeAgpHashEl	hg/lib/agp.c	/^void freeAgpHashEl(struct hashEl *agpHashEl)$/;"	f
freeArray	hg/inc/wiggle.h	/^    void (*freeArray)(struct wiggleDataStream *wds);$/;"	m	struct:wiggleDataStream
freeArray	hg/lib/wigDataStream.c	/^static void freeArray(struct wiggleDataStream *wds)$/;"	f	file:
freeAscii	hg/inc/wiggle.h	/^    void (*freeAscii)(struct wiggleDataStream *wds);$/;"	m	struct:wiggleDataStream
freeAscii	hg/lib/wigDataStream.c	/^static void freeAscii(struct wiggleDataStream *wds)$/;"	f	file:
freeBed	hg/inc/wiggle.h	/^    void (*freeBed)(struct wiggleDataStream *wds);$/;"	m	struct:wiggleDataStream
freeBed	hg/lib/wigDataStream.c	/^static void freeBed(struct wiggleDataStream *wds)$/;"	f	file:
freeChrom	hg/lib/chromBins.c	/^static void freeChrom(struct chromBins *chromBins, struct binKeeper *chromBk)$/;"	f	file:
freeCmds	hg/lib/hgFind.c	/^static void freeCmds(char **cmds[], int keyCount)$/;"	f	file:
freeConstraints	hg/inc/wiggle.h	/^    void (*freeConstraints)(struct wiggleDataStream *wds);$/;"	m	struct:wiggleDataStream
freeConstraints	hg/lib/wigDataStream.c	/^static void freeConstraints(struct wiggleDataStream *wds)$/;"	f	file:
freeContig	jkOwnLib/xenbig.c	/^static void freeContig(struct contig **pContig)$/;"	f	file:
freeContigList	jkOwnLib/xenbig.c	/^static void freeContigList(struct dlList **pContigList)$/;"	f	file:
freeCustomTrack	hg/lib/customFactory.c	/^static void freeCustomTrack(struct customTrack **pTrack)$/;"	f	file:
freeData	inc/shaRes.h	/^    void (*freeData)(void *pData);$/;"	m	struct:shaResList
freeDenseAliInfo	hg/lib/ggCluster.c	/^void freeDenseAliInfo(struct ggAliInfo **pDa)$/;"	f
freeDenseAliInfoList	hg/lib/ggCluster.c	/^void freeDenseAliInfoList(struct ggAliInfo **pDaList)$/;"	f
freeDlList	lib/dlist.c	/^void freeDlList(struct dlList **pList)$/;"	f
freeDlListAndVals	lib/dlist.c	/^void freeDlListAndVals(struct dlList **pList)$/;"	f
freeDnaSeq	lib/dnaseq.c	/^void freeDnaSeq(struct dnaSeq **pSeq)$/;"	f
freeDnaSeqList	lib/dnaseq.c	/^void freeDnaSeqList(struct dnaSeq **pSeqList)$/;"	f
freeDyString	lib/dystring.c	/^void freeDyString(struct dyString **pDs)$/;"	f
freeDyStringList	lib/dystring.c	/^void freeDyStringList(struct dyString **pDs)$/;"	f
freeEl	lib/colHash.h	/^    struct colHashEl *freeEl;		\/* Pointer to next free element. *\/$/;"	m	struct:colHash	typeref:struct:colHash::colHashEl
freeExpDataMatrix	hg/lib/microarray.c	/^void freeExpDataMatrix(struct maExpDataMatrix **pMat)$/;"	f
freeFastProber	jkOwnLib/crudeali.c	/^static void freeFastProber(struct fastProber **pFp)$/;"	f	file:
freeFunc	hg/inc/chromBins.h	/^    chromBinsFreeFunc *freeFunc;  \/* entry free function if not null *\/ $/;"	m	struct:chromBins
freeGIList	hg/lib/mafGene.c	/^static void freeGIList(struct exonInfo *list)$/;"	f	file:
freeGeneGraph	hg/lib/geneGraph.c	/^void freeGeneGraph(struct geneGraph **pGg)$/;"	f
freeGgMrnaAli	hg/lib/ggDump.c	/^void freeGgMrnaAli(struct ggMrnaAli **pMa)$/;"	f
freeGgMrnaAliList	hg/lib/ggDump.c	/^void freeGgMrnaAliList(struct ggMrnaAli **pMaList)$/;"	f
freeGgMrnaInput	hg/lib/ggDump.c	/^void freeGgMrnaInput(struct ggMrnaInput **pCi)$/;"	f
freeHash	lib/hash.c	/^void freeHash(struct hash **pHash)$/;"	f
freeHashAndVals	lib/hash.c	/^void freeHashAndVals(struct hash **pHash)$/;"	f
freeHashEl	lib/hash.c	/^void freeHashEl(struct hashEl *hel)$/;"	f
freeHistoGram	lib/histogram.c	/^void freeHistoGram(struct histoResult **histoResults)$/;"	f
freeHitCallback	lib/trix.c	/^static void freeHitCallback(void *val)$/;"	f	file:
freeKvt	lib/keys.c	/^void freeKvt(struct kvt **pKvt)$/;"	f
freeList	inc/rbTree.h	/^    struct rbTreeNode *freeList;		\/* List of nodes to reuse. *\/$/;"	m	struct:rbTree	typeref:struct:rbTree::rbTreeNode
freeMem	lib/memalloc.c	/^void freeMem(void *pt)$/;"	f
freeMrnaCluster	hg/lib/ggCluster.c	/^static void freeMrnaCluster(struct ggMrnaCluster **pMc)$/;"	f	file:
freeNt4	lib/nt4.c	/^void freeNt4(struct nt4Seq **pSeq)$/;"	f
freePacketSeen	lib/rudp.c	/^void freePacketSeen(struct packetSeen **pP)$/;"	f
freePatSpace	jkOwnLib/patSpace.c	/^void freePatSpace(struct patSpace **pPatSpace)$/;"	f
freeQuickHeap	lib/quickHeap.c	/^void freeQuickHeap(struct quickHeap **pH)$/;"	f
freeSpeciesInfo	hg/lib/mafGene.c	/^static void freeSpeciesInfo(struct speciesInfo *list)$/;"	f	file:
freeStats	hg/inc/wiggle.h	/^    void (*freeStats)(struct wiggleDataStream *wds);$/;"	m	struct:wiggleDataStream
freeStats	hg/lib/wigDataStream.c	/^static void freeStats(struct wiggleDataStream *wds)$/;"	f	file:
freeWormCdnaIterator	lib/wormdna.c	/^void freeWormCdnaIterator(struct wormCdnaIterator **pIt)$/;"	f
free_code	lib/gifcomp.c	/^static short free_code;$/;"	v	file:
freez	lib/memalloc.c	/^void freez(void *vpt)$/;"	f
frequency	hg/inc/delHinds2.h	/^    float frequency;	\/* Frequency *\/$/;"	m	struct:delHinds2
frm_hgt	lib/gemfont.h	/^WORD	frm_hgt;	\/* Pixel height of bitmap. *\/$/;"	m	struct:font_hdr
frm_wdt	lib/gemfont.h	/^WORD	frm_wdt;	\/* Byte width of bitmap. *\/$/;"	m	struct:font_hdr
from	hg/inc/coordConv.h	/^    struct coordConv *from; \/** origninal coordinates to change *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::coordConv
fromDb	hg/inc/liftOverChain.h	/^    char *fromDb;	\/* Short name of 'from' database.  'hg15' or the like *\/$/;"	m	struct:liftOverChain
fromPsl	hg/inc/customTrack.h	/^    boolean fromPsl;		\/* Track was derived from psl file. *\/$/;"	m	struct:customTrack
ftFloat	hg/inc/hui.h	/^    ftFloat   =2,$/;"	e	enum:fieldType
ftInteger	hg/inc/hui.h	/^    ftInteger =1,$/;"	e	enum:fieldType
ftString	hg/inc/hui.h	/^    ftString  =0,$/;"	e	enum:fieldType
fudgeThick	hg/inc/liftOverChain.h	/^    char fudgeThick[2];	\/* If thickStart\/thickEnd is not mapped, use the closest mapped base. *\/$/;"	m	struct:liftOverChain
full	hg/inc/joiner.h	/^    boolean full;		\/* All identifiers covered. *\/$/;"	m	struct:joinerField
fullLine	inc/linefile.h	/^    struct dyString *fullLine;  \/\/ Filled with full line when a lineFileNextFull is called$/;"	m	struct:lineFile	typeref:struct:lineFile::dyString
fullLineReuse	inc/linefile.h	/^    boolean fullLineReuse;      \/\/ If TRUE, next call to lineFileNextFull will get already built fullLine$/;"	m	struct:lineFile
fullName	hg/inc/celeraDupPositive.h	/^    char *fullName;\/* Other FPC contig involved NEED BETTER DESCRIPTION*\/$/;"	m	struct:celeraDupPositive
fullName	hg/inc/genoLay.h	/^     char *fullName;	\/* Name of full deal. Set before genoLayNew. *\/$/;"	m	struct:genoLayChrom
fullScore	hg/inc/rnaGene.h	/^    float fullScore;	\/* Score as in Sean Eddy's files. *\/$/;"	m	struct:rnaGene
fullText	inc/htmlPage.h	/^    char *fullText;			\/* Full unparsed text including headers. *\/$/;"	m	struct:htmlPage
fullname	hg/inc/cddInfo.h	/^    char *fullname;	\/* standard name *\/$/;"	m	struct:cddInfo
fullname	hg/inc/megablastInfo.h	/^    char *fullname;	\/* hit name *\/$/;"	m	struct:megablastInfo
func	hg/inc/dbSnpRs.h	/^    char *func;	\/* the functional category of the SNP, if any *\/$/;"	m	struct:dbSnpRs
func	hg/inc/snp.h	/^    char *func;	\/* The functional category of the SNP *\/$/;"	m	struct:snp
func	hg/inc/snp125.h	/^    char *func;	\/* The functional category of the SNP (coding-synon, coding-nonsynon, intron, etc.) *\/$/;"	m	struct:snp125
func	hg/inc/snp125.h	/^    char *func;	\/* The functional category of the SNP (coding-synon, coding-nonsynon, intron, etc.) *\/$/;"	m	struct:snp125Extended
func	hg/inc/snp132Ext.h	/^    char *func;	\/* Functional category of the SNP (coding-synon, coding-nonsynon, intron, etc.) *\/$/;"	m	struct:snp132Ext
func	hg/inc/snpTmp.h	/^    char *func;	\/* set for function *\/$/;"	m	struct:snpTmp
funcCodes	hg/inc/snp125CodingCoordless.h	/^    unsigned short *funcCodes;	\/* dbSNP function codes (e.g. 42=missense) *\/$/;"	m	struct:snp125CodingCoordless
fuzzyTermFormat	hg/lib/hgFindSpecCustom.c	/^static char *fuzzyTermFormat = "'%%%s%%'";$/;"	v	file:
fwd	hg/inc/hui.h	/^    boolean fwd;                \/\/ direction$/;"	m	struct:_sortColumn
fwidest_char	lib/gemfont.c	/^int fwidest_char(struct font_hdr *f)$/;"	f
g	hg/inc/kgColor.h	/^    unsigned char g;	\/* Green component 0-255 *\/$/;"	m	struct:kgColor
g	inc/memgfx.h	/^    unsigned char r, g, b;$/;"	m	struct:rgbColor
gChrom	hg/inc/pseudoGeneLink.h	/^    char *gChrom;	\/* Chromosome name *\/$/;"	m	struct:pseudoGeneLink
gChrom	hg/inc/retroMrnaInfo.h	/^    char *gChrom;	\/* Chromosome name col16 *\/$/;"	m	struct:retroMrnaInfo
gChrom	hg/inc/ucscRetroInfo.h	/^    char *gChrom;	\/* Chromosome name col16 *\/$/;"	m	struct:ucscRetroInfo
gEnd	hg/inc/pseudoGeneLink.h	/^    int gEnd;	\/* gene alignment end position *\/$/;"	m	struct:pseudoGeneLink
gEnd	hg/inc/retroMrnaInfo.h	/^    int gEnd;	\/* gene alignment end position col18 *\/$/;"	m	struct:retroMrnaInfo
gEnd	hg/inc/ucscRetroInfo.h	/^    int gEnd;	\/* gene alignment end position col18 *\/$/;"	m	struct:ucscRetroInfo
gLogFh	lib/log.c	/^static FILE *gLogFh = NULL;         \/* logging file *\/$/;"	v	file:
gMinPriority	lib/log.c	/^static int gMinPriority = PRI_INFO;  \/\/ minimum priority to log (reverse numbering)$/;"	v	file:
gProb	inc/dnaMotif.h	/^    float *gProb;       \/* Probability of G's in each column. *\/$/;"	m	struct:dnaMotif
gProgram	lib/log.c	/^static char *gProgram = "unknown";  \/* name of program *\/$/;"	v	file:
gStart	hg/inc/pseudoGeneLink.h	/^    int gStart;	\/* gene alignment start position *\/$/;"	m	struct:pseudoGeneLink
gStart	hg/inc/retroMrnaInfo.h	/^    int gStart;	\/* gene alignment start position col17 *\/$/;"	m	struct:retroMrnaInfo
gStart	hg/inc/ucscRetroInfo.h	/^    int gStart;	\/* gene alignment start position col17 *\/$/;"	m	struct:ucscRetroInfo
gStrand	hg/inc/pseudoGeneLink.h	/^    char gStrand[3];	\/* strand of gene *\/$/;"	m	struct:pseudoGeneLink
gStrand	hg/inc/retroMrnaInfo.h	/^    char gStrand[3];	\/* strand of gene col19 *\/$/;"	m	struct:retroMrnaInfo
gStrand	hg/inc/ucscRetroInfo.h	/^    char gStrand[3];	\/* strand of gene col19 *\/$/;"	m	struct:ucscRetroInfo
gSysLogOn	lib/log.c	/^static boolean gSysLogOn = FALSE;   \/* syslog logging enabled? *\/$/;"	v	file:
gap	hg/inc/codeBlastScore.h	/^    unsigned gap;	\/* gap length *\/$/;"	m	struct:codeBlastScore
gap	hg/inc/sargassoSeaXra.h	/^    unsigned gap;	\/* gap length *\/$/;"	m	struct:sargassoSeaXra
gap	inc/gff3.h	/^    char *gap; \/* The alignment of the feature to the target if the two are$/;"	m	struct:gff3Ann
gapAdjustFold	lib/rnautil.c	/^char *gapAdjustFold(char *s, char *ref)$/;"	f
gapCalc	inc/chainConnect.h	/^    struct gapCalc *gapCalc;$/;"	m	struct:chainConnect	typeref:struct:chainConnect::gapCalc
gapCalc	lib/gapCalc.c	/^struct gapCalc$/;"	s	file:
gapCalcCheap	lib/gapCalc.c	/^struct gapCalc *gapCalcCheap()$/;"	f
gapCalcCost	lib/gapCalc.c	/^int gapCalcCost(struct gapCalc *gapCalc, int dq, int dt)$/;"	f
gapCalcDefault	lib/gapCalc.c	/^struct gapCalc *gapCalcDefault()$/;"	f
gapCalcFree	lib/gapCalc.c	/^void gapCalcFree(struct gapCalc **pGapCalc)$/;"	f
gapCalcFromFile	lib/gapCalc.c	/^struct gapCalc *gapCalcFromFile(char *fileName)$/;"	f
gapCalcFromString	lib/gapCalc.c	/^struct gapCalc *gapCalcFromString(char *s)$/;"	f
gapCalcOriginal	lib/gapCalc.c	/^struct gapCalc *gapCalcOriginal()$/;"	f
gapCalcRead	lib/gapCalc.c	/^struct gapCalc *gapCalcRead(struct lineFile *lf)$/;"	f
gapCalcRnaDna	lib/gapCalc.c	/^struct gapCalc *gapCalcRnaDna()$/;"	f
gapCalcSampleFileContents	lib/gapCalc.c	/^char *gapCalcSampleFileContents()$/;"	f
gapCalcTest	lib/gapCalc.c	/^void gapCalcTest(struct gapCalc *gapCalc)$/;"	f
gapExtend	inc/axt.h	/^    int gapExtend;	\/* Gap extension. *\/$/;"	m	struct:axtScoreScheme
gapIntArrayAdjust	lib/rnautil.c	/^int * gapIntArrayAdjust(int *in, char *ref)$/;"	f
gapNotMasked	lib/axt.c	/^boolean gapNotMasked(char q, char t)$/;"	f
gapOpen	hg/inc/blastTab.h	/^    unsigned gapOpen;	\/* Number of gap openings *\/$/;"	m	struct:blastTab
gapOpen	inc/axt.h	/^    int gapOpen;	\/* Gap open cost. *\/$/;"	m	struct:axtScoreScheme
gap_costs	lib/mafScore.c	/^static void gap_costs(int *gop, int *gtype, int gap_open)$/;"	f	file:
gap_scores	lib/mafScore.c	/^typedef struct gap_scores {$/;"	s	file:
gap_scores_t	lib/mafScore.c	/^} gap_scores_t;$/;"	t	typeref:struct:gap_scores	file:
gapped	inc/blastParse.h	/^    struct blastGappedAli *gapped;      \/* List of gapped alignments. *\/$/;"	m	struct:blastQuery	typeref:struct:blastQuery::blastGappedAli
gappedAli	inc/blastParse.h	/^    struct blastGappedAli *gappedAli;   \/* gapped ali associated with block *\/$/;"	m	struct:blastBlock	typeref:struct:blastBlock::blastGappedAli
gaussean	lib/hmmstats.c	/^double gaussean(double x, double mean, double sd)$/;"	f
gb	hg/inc/sage.h	/^    char gb[65];	\/* Genebank accesion number. *\/$/;"	m	struct:sage
gbCount	hg/inc/stsInfo.h	/^    unsigned gbCount;	\/* Number of related GenBank accessions *\/$/;"	m	struct:stsInfo
gbCount	hg/inc/stsInfo2.h	/^    unsigned gbCount;	\/* Number of related GenBank accessions *\/$/;"	m	struct:stsInfo2
gbExtFile	hg/inc/gbExtFile.h	/^struct gbExtFile$/;"	s
gbExtFile	hg/inc/gbSeq.h	/^    unsigned gbExtFile;	\/* ID\/index of file in gbExtFile *\/$/;"	m	struct:gbSeq
gbExtFileCommaIn	hg/lib/gbExtFile.c	/^struct gbExtFile *gbExtFileCommaIn(char **pS, struct gbExtFile *ret)$/;"	f
gbExtFileCommaOut	hg/inc/gbExtFile.h	57;"	d
gbExtFileFree	hg/lib/gbExtFile.c	/^void gbExtFileFree(struct gbExtFile **pEl)$/;"	f
gbExtFileFreeList	hg/lib/gbExtFile.c	/^void gbExtFileFreeList(struct gbExtFile **pList)$/;"	f
gbExtFileLoad	hg/lib/gbExtFile.c	/^struct gbExtFile *gbExtFileLoad(char **row)$/;"	f
gbExtFileLoadAll	hg/lib/gbExtFile.c	/^struct gbExtFile *gbExtFileLoadAll(char *fileName) $/;"	f
gbExtFileLoadAllByChar	hg/lib/gbExtFile.c	/^struct gbExtFile *gbExtFileLoadAllByChar(char *fileName, char chopper) $/;"	f
gbExtFileLoadAllByTab	hg/inc/gbExtFile.h	35;"	d
gbExtFileOutput	hg/lib/gbExtFile.c	/^void gbExtFileOutput(struct gbExtFile *el, FILE *f, char sep, char lastSep) $/;"	f
gbExtFileStaticLoad	hg/lib/gbExtFile.c	/^void gbExtFileStaticLoad(char **row, struct gbExtFile *ret)$/;"	f
gbExtFileTabOut	hg/inc/gbExtFile.h	54;"	d
gbGeneName	hg/inc/knownMore.h	/^    unsigned gbGeneName;	\/* Connect to geneName table. Genbank gene name *\/$/;"	m	struct:knownMore
gbMiscDiff	hg/inc/gbMiscDiff.h	/^struct gbMiscDiff$/;"	s
gbMiscDiffCommaIn	hg/lib/gbMiscDiff.c	/^struct gbMiscDiff *gbMiscDiffCommaIn(char **pS, struct gbMiscDiff *ret)$/;"	f
gbMiscDiffCommaOut	hg/inc/gbMiscDiff.h	60;"	d
gbMiscDiffFree	hg/lib/gbMiscDiff.c	/^void gbMiscDiffFree(struct gbMiscDiff **pEl)$/;"	f
gbMiscDiffFreeList	hg/lib/gbMiscDiff.c	/^void gbMiscDiffFreeList(struct gbMiscDiff **pList)$/;"	f
gbMiscDiffLoad	hg/lib/gbMiscDiff.c	/^struct gbMiscDiff *gbMiscDiffLoad(char **row)$/;"	f
gbMiscDiffLoadAll	hg/lib/gbMiscDiff.c	/^struct gbMiscDiff *gbMiscDiffLoadAll(char *fileName) $/;"	f
gbMiscDiffLoadAllByChar	hg/lib/gbMiscDiff.c	/^struct gbMiscDiff *gbMiscDiffLoadAllByChar(char *fileName, char chopper) $/;"	f
gbMiscDiffLoadAllByTab	hg/inc/gbMiscDiff.h	38;"	d
gbMiscDiffOutput	hg/lib/gbMiscDiff.c	/^void gbMiscDiffOutput(struct gbMiscDiff *el, FILE *f, char sep, char lastSep) $/;"	f
gbMiscDiffStaticLoad	hg/lib/gbMiscDiff.c	/^void gbMiscDiffStaticLoad(char **row, struct gbMiscDiff *ret)$/;"	f
gbMiscDiffTabOut	hg/inc/gbMiscDiff.h	57;"	d
gbNgi	hg/inc/knownMore.h	/^    char *gbNgi;	\/* Genbank gi of nucleotide seq. *\/$/;"	m	struct:knownMore
gbPgi	hg/inc/knownMore.h	/^    char *gbPgi;	\/* Genbank gi of protein seq. *\/$/;"	m	struct:knownMore
gbProductName	hg/inc/knownMore.h	/^    unsigned gbProductName;	\/* Connects to productName table. Genbank product name *\/$/;"	m	struct:knownMore
gbProtAnn	hg/inc/gbProtAnn.h	/^struct gbProtAnn$/;"	s
gbProtAnnCommaIn	hg/lib/gbProtAnn.c	/^struct gbProtAnn *gbProtAnnCommaIn(char **pS, struct gbProtAnn *ret)$/;"	f
gbProtAnnCommaOut	hg/inc/gbProtAnn.h	52;"	d
gbProtAnnFree	hg/lib/gbProtAnn.c	/^void gbProtAnnFree(struct gbProtAnn **pEl)$/;"	f
gbProtAnnFreeList	hg/lib/gbProtAnn.c	/^void gbProtAnnFreeList(struct gbProtAnn **pList)$/;"	f
gbProtAnnLoad	hg/lib/gbProtAnn.c	/^struct gbProtAnn *gbProtAnnLoad(char **row)$/;"	f
gbProtAnnLoadAll	hg/lib/gbProtAnn.c	/^struct gbProtAnn *gbProtAnnLoadAll(char *fileName) $/;"	f
gbProtAnnOutput	hg/lib/gbProtAnn.c	/^void gbProtAnnOutput(struct gbProtAnn *el, FILE *f, char sep, char lastSep) $/;"	f
gbProtAnnStaticLoad	hg/lib/gbProtAnn.c	/^void gbProtAnnStaticLoad(char **row, struct gbProtAnn *ret)$/;"	f
gbProtAnnTabOut	hg/inc/gbProtAnn.h	49;"	d
gbProteinAcc	hg/inc/knownMore.h	/^    char *gbProteinAcc;	\/* Genbank accession of protein *\/$/;"	m	struct:knownMore
gbRNAs	hg/inc/gbRNAs.h	/^struct gbRNAs$/;"	s
gbRNAsCommaIn	hg/lib/gbRNAs.c	/^struct gbRNAs *gbRNAsCommaIn(char **pS, struct gbRNAs *ret)$/;"	f
gbRNAsCommaOut	hg/inc/gbRNAs.h	62;"	d
gbRNAsFree	hg/lib/gbRNAs.c	/^void gbRNAsFree(struct gbRNAs **pEl)$/;"	f
gbRNAsFreeList	hg/lib/gbRNAs.c	/^void gbRNAsFreeList(struct gbRNAs **pList)$/;"	f
gbRNAsLoad	hg/lib/gbRNAs.c	/^struct gbRNAs *gbRNAsLoad(char **row)$/;"	f
gbRNAsLoadAll	hg/lib/gbRNAs.c	/^struct gbRNAs *gbRNAsLoadAll(char *fileName) $/;"	f
gbRNAsLoadAllByChar	hg/lib/gbRNAs.c	/^struct gbRNAs *gbRNAsLoadAllByChar(char *fileName, char chopper) $/;"	f
gbRNAsLoadAllByTab	hg/inc/gbRNAs.h	40;"	d
gbRNAsOutput	hg/lib/gbRNAs.c	/^void gbRNAsOutput(struct gbRNAs *el, FILE *f, char sep, char lastSep) $/;"	f
gbRNAsStaticLoad	hg/lib/gbRNAs.c	/^void gbRNAsStaticLoad(char **row, struct gbRNAs *ret)$/;"	f
gbRNAsTabOut	hg/inc/gbRNAs.h	59;"	d
gbSeq	hg/inc/gbSeq.h	/^struct gbSeq$/;"	s
gbSeqCommaIn	hg/lib/gbSeq.c	/^struct gbSeq *gbSeqCommaIn(char **pS, struct gbSeq *ret)$/;"	f
gbSeqCommaOut	hg/inc/gbSeq.h	75;"	d
gbSeqEST	hg/inc/gbSeq.h	/^    gbSeqEST = 0,$/;"	e	enum:gbSeqType
gbSeqFree	hg/lib/gbSeq.c	/^void gbSeqFree(struct gbSeq **pEl)$/;"	f
gbSeqFreeList	hg/lib/gbSeq.c	/^void gbSeqFreeList(struct gbSeq **pList)$/;"	f
gbSeqGenBank	hg/inc/gbSeq.h	/^    gbSeqGenBank = 0,$/;"	e	enum:gbSeqSrcDb
gbSeqLoad	hg/lib/gbSeq.c	/^struct gbSeq *gbSeqLoad(char **row)$/;"	f
gbSeqLoadAll	hg/lib/gbSeq.c	/^struct gbSeq *gbSeqLoadAll(char *fileName) $/;"	f
gbSeqLoadAllByChar	hg/lib/gbSeq.c	/^struct gbSeq *gbSeqLoadAllByChar(char *fileName, char chopper) $/;"	f
gbSeqLoadAllByTab	hg/inc/gbSeq.h	53;"	d
gbSeqMRNA	hg/inc/gbSeq.h	/^    gbSeqMRNA = 1,$/;"	e	enum:gbSeqType
gbSeqOther	hg/inc/gbSeq.h	/^    gbSeqOther = 2,$/;"	e	enum:gbSeqSrcDb
gbSeqOutput	hg/lib/gbSeq.c	/^void gbSeqOutput(struct gbSeq *el, FILE *f, char sep, char lastSep) $/;"	f
gbSeqPEP	hg/inc/gbSeq.h	/^    gbSeqPEP = 2,$/;"	e	enum:gbSeqType
gbSeqRefSeq	hg/inc/gbSeq.h	/^    gbSeqRefSeq = 1,$/;"	e	enum:gbSeqSrcDb
gbSeqSrcDb	hg/inc/gbSeq.h	/^enum gbSeqSrcDb$/;"	g
gbSeqStaticLoad	hg/lib/gbSeq.c	/^void gbSeqStaticLoad(char **row, struct gbSeq *ret)$/;"	f
gbSeqTabOut	hg/inc/gbSeq.h	72;"	d
gbSeqType	hg/inc/gbSeq.h	/^enum gbSeqType$/;"	g
gbWarn	hg/inc/gbWarn.h	/^struct gbWarn$/;"	s
gbWarnAthRage	hg/inc/gbWarn.h	/^    gbWarnAthRage = 1,$/;"	e	enum:gbWarnReason
gbWarnCommaIn	hg/lib/gbWarn.c	/^struct gbWarn *gbWarnCommaIn(char **pS, struct gbWarn *ret)$/;"	f
gbWarnCommaOut	hg/inc/gbWarn.h	62;"	d
gbWarnFree	hg/lib/gbWarn.c	/^void gbWarnFree(struct gbWarn **pEl)$/;"	f
gbWarnFreeList	hg/lib/gbWarn.c	/^void gbWarnFreeList(struct gbWarn **pList)$/;"	f
gbWarnInvitroNorm	hg/inc/gbWarn.h	/^    gbWarnInvitroNorm = 0,$/;"	e	enum:gbWarnReason
gbWarnLoad	hg/lib/gbWarn.c	/^struct gbWarn *gbWarnLoad(char **row)$/;"	f
gbWarnLoadAll	hg/lib/gbWarn.c	/^struct gbWarn *gbWarnLoadAll(char *fileName) $/;"	f
gbWarnLoadAllByChar	hg/lib/gbWarn.c	/^struct gbWarn *gbWarnLoadAllByChar(char *fileName, char chopper) $/;"	f
gbWarnLoadAllByTab	hg/inc/gbWarn.h	40;"	d
gbWarnOrestes	hg/inc/gbWarn.h	/^    gbWarnOrestes = 2,$/;"	e	enum:gbWarnReason
gbWarnOutput	hg/lib/gbWarn.c	/^void gbWarnOutput(struct gbWarn *el, FILE *f, char sep, char lastSep) $/;"	f
gbWarnReason	hg/inc/gbWarn.h	/^enum gbWarnReason$/;"	g
gbWarnStaticLoad	hg/lib/gbWarn.c	/^void gbWarnStaticLoad(char **row, struct gbWarn *ret)$/;"	f
gbWarnTabOut	hg/inc/gbWarn.h	59;"	d
gbdAnchor	hg/inc/tableDescriptions.h	/^    char *gbdAnchor;	\/* Anchor for table description in gbdDescriptions.html *\/$/;"	m	struct:tableDescriptions
gbkAcc	hg/inc/chicken13kInfo.h	/^    char *gbkAcc;	\/* Genbank accession *\/$/;"	m	struct:chicken13kInfo
gbrowserRangeExp	hg/lib/hgFind.c	/^char *gbrowserRangeExp = $/;"	v
gcContent	hg/inc/rnaHybridization.h	/^    float gcContent;	\/* GC content ranging from 0 to 1 *\/$/;"	m	struct:rnaHybridization
gcNum	hg/inc/cpgIsland.h	/^    unsigned gcNum;	\/* Number of C and G in island *\/$/;"	m	struct:cpgIsland
gcNum	hg/inc/cpgIslandExt.h	/^    unsigned gcNum;	\/* Number of C and G in island *\/$/;"	m	struct:cpgIslandExt
gcPercent	hg/inc/gcPercent.h	/^struct gcPercent$/;"	s
gcPercentCommaIn	hg/lib/gcPercent.c	/^struct gcPercent *gcPercentCommaIn(char **pS, struct gcPercent *ret)$/;"	f
gcPercentCommaOut	hg/inc/gcPercent.h	45;"	d
gcPercentFree	hg/lib/gcPercent.c	/^void gcPercentFree(struct gcPercent **pEl)$/;"	f
gcPercentFreeList	hg/lib/gcPercent.c	/^void gcPercentFreeList(struct gcPercent **pList)$/;"	f
gcPercentLoad	hg/lib/gcPercent.c	/^struct gcPercent *gcPercentLoad(char **row)$/;"	f
gcPercentOutput	hg/lib/gcPercent.c	/^void gcPercentOutput(struct gcPercent *el, FILE *f, char sep, char lastSep) $/;"	f
gcPercentStaticLoad	hg/lib/gcPercent.c	/^void gcPercentStaticLoad(char **row, struct gcPercent *ret)$/;"	f
gcPercentTabOut	hg/inc/gcPercent.h	42;"	d
gcPpt	hg/inc/gcPercent.h	/^    unsigned gcPpt;	\/* GC percentage for 20Kb block *\/$/;"	m	struct:gcPercent
gcPpt	hg/inc/isochores.h	/^    unsigned gcPpt;	\/* GC content in parts per thousand *\/$/;"	m	struct:isochores
gce	lib/gifwrite.c	/^    } gce = {0x21, 0xF9, 0x04, \/\/ fixed bytes from spec$/;"	v	typeref:struct:gif_gce	file:
gdb	hg/inc/stsInfo.h	/^    char **gdb;	\/* Related GDB identifies *\/$/;"	m	struct:stsInfo
gdb	hg/inc/stsInfo2.h	/^    char **gdb;	\/* Related GDB identifies *\/$/;"	m	struct:stsInfo2
gdbCount	hg/inc/stsInfo.h	/^    unsigned gdbCount;	\/* Number of related GDB identifiers *\/$/;"	m	struct:stsInfo
gdbCount	hg/inc/stsInfo2.h	/^    unsigned gdbCount;	\/* Number of related GDB identifiers *\/$/;"	m	struct:stsInfo2
gdbId	hg/inc/knownMore.h	/^    char *gdbId;	\/* NCBI GDB database ID *\/$/;"	m	struct:knownMore
gdbMapped	hg/inc/hgnc.h	/^    char *gdbMapped;	\/* GDB ID (mapped data) *\/$/;"	m	struct:hgnc
gdfDataPoint	inc/gdf.h	/^struct gdfDataPoint$/;"	s
gdfFreeGene	lib/gdf.c	/^void gdfFreeGene(struct gdfGene *gene)$/;"	f
gdfFreeGeneList	lib/gdf.c	/^void gdfFreeGeneList(struct gdfGene **pList)$/;"	f
gdfGene	inc/gdf.h	/^struct gdfGene$/;"	s
gdfGeneExtents	lib/gdf.c	/^void gdfGeneExtents(struct gdfGene *gene, long *pMin, long *pMax)$/;"	f
gdfOffsetGene	lib/gdf.c	/^void gdfOffsetGene(struct gdfGene *gene, int offset)$/;"	f
gdfRcGene	lib/gdf.c	/^void gdfRcGene(struct gdfGene *gene, int size)$/;"	f
gdfReadOneGene	lib/gdf.c	/^struct gdfGene *gdfReadOneGene(FILE *f)$/;"	f
gdfUpcExons	lib/gdf.c	/^void gdfUpcExons(struct gdfGene *gene, int geneOffset, DNA *dna, int dnaSize, int dnaOffset)$/;"	f
genBankCount	hg/inc/rikenBest.h	/^    int genBankCount;	\/* Number of Genbank mRNAs in cluster *\/$/;"	m	struct:rikenBest
genBankCount	hg/inc/rikenCluster.h	/^    unsigned genBankCount;	\/* Number of Genbank mrnas in cluster *\/$/;"	m	struct:rikenUcscCluster
genBankCount	hg/inc/rnaGroup.h	/^    unsigned genBankCount;	\/* Number of Genbank mrnas in cluster *\/$/;"	m	struct:rnaGroup
genBanks	hg/inc/rikenCluster.h	/^    char **genBanks;	\/* List of Genbank accessions *\/$/;"	m	struct:rikenUcscCluster
genBanks	hg/inc/rnaGroup.h	/^    char **genBanks;	\/* List of Genbank accessions *\/$/;"	m	struct:rnaGroup
genMapDb	hg/inc/genMapDb.h	/^struct genMapDb$/;"	s
genMapDbCommaIn	hg/lib/genMapDb.c	/^struct genMapDb *genMapDbCommaIn(char **pS, struct genMapDb *ret)$/;"	f
genMapDbCommaOut	hg/inc/genMapDb.h	66;"	d
genMapDbFree	hg/lib/genMapDb.c	/^void genMapDbFree(struct genMapDb **pEl)$/;"	f
genMapDbFreeList	hg/lib/genMapDb.c	/^void genMapDbFreeList(struct genMapDb **pList)$/;"	f
genMapDbLoad	hg/lib/genMapDb.c	/^struct genMapDb *genMapDbLoad(char **row)$/;"	f
genMapDbLoadAll	hg/lib/genMapDb.c	/^struct genMapDb *genMapDbLoadAll(char *fileName) $/;"	f
genMapDbLoadWhere	hg/lib/genMapDb.c	/^struct genMapDb *genMapDbLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
genMapDbOutput	hg/lib/genMapDb.c	/^void genMapDbOutput(struct genMapDb *el, FILE *f, char sep, char lastSep) $/;"	f
genMapDbStaticLoad	hg/lib/genMapDb.c	/^void genMapDbStaticLoad(char **row, struct genMapDb *ret)$/;"	f
genMapDbTabOut	hg/inc/genMapDb.h	63;"	d
genbank	hg/inc/bacCloneXRef.h	/^    char *genbank;	\/* Genbank accession for the BAC Clone *\/$/;"	m	struct:bacCloneXRef
genbank	hg/inc/easyGene.h	/^    char genbank[2];	\/* Y or N this is the genbank one *\/$/;"	m	struct:easyGene
genbank	hg/inc/stsInfo.h	/^    char **genbank;	\/* Related GeneBank accessions *\/$/;"	m	struct:stsInfo
genbank	hg/inc/stsInfo2.h	/^    char **genbank;	\/* Related GeneBank accessions *\/$/;"	m	struct:stsInfo2
genbank	hg/inc/tigrCmrGene.h	/^    char *genbank;	\/* Genbank ID *\/$/;"	m	struct:tigrCmrGene
genbankBlackListFail	hg/lib/genbankBlackList.c	/^boolean genbankBlackListFail(char *accession, struct blackListRange *ranges)$/;"	f
genbankBlackListParse	hg/lib/genbankBlackList.c	/^struct blackListRange *genbankBlackListParse(char *blackList)$/;"	f
genbankCds	hg/inc/genbank.h	/^struct genbankCds$/;"	s
genbankCdsParse	hg/lib/genbank.c	/^boolean genbankCdsParse(char *cdsStr, struct genbankCds* cds)$/;"	f
genbankCdsToGenome	hg/lib/genbank.c	/^struct genbankCds genbankCdsToGenome(struct genbankCds* cds, struct psl *psl)$/;"	f
genbankDropVer	hg/lib/genbank.c	/^char* genbankDropVer(char *outAcc, char *inAcc)$/;"	f
genbankExceptionsHash	hg/lib/genbank.c	/^void genbankExceptionsHash(char *fileName, $/;"	f
genbankGrepQuery	hg/lib/hgFind.c	/^static struct slName *genbankGrepQuery(char *indexFile, char *table, char *key)$/;"	f	file:
genbankIds	hg/inc/imageClone.h	/^    char **genbankIds;	\/* Genbank accession number(s) *\/$/;"	m	struct:imageClone
genbankIsRefSeqAcc	hg/lib/genbank.c	/^boolean genbankIsRefSeqAcc(char *acc)$/;"	f
genbankIsRefSeqCodingMRnaAcc	hg/lib/genbank.c	/^boolean genbankIsRefSeqCodingMRnaAcc(char *acc)$/;"	f
genbankIsRefSeqNonCodingMRnaAcc	hg/lib/genbank.c	/^boolean genbankIsRefSeqNonCodingMRnaAcc(char *acc)$/;"	f
genbankParseCds	hg/lib/genbank.c	/^boolean genbankParseCds(char *cdsStr, unsigned *cdsStart, unsigned *cdsEnd)$/;"	f
genbankSqlFuzzyQuery	hg/lib/hgFind.c	/^static struct slName *genbankSqlFuzzyQuery(struct sqlConnection *conn,$/;"	f	file:
gencodeGeneClass	hg/inc/gencodeGeneClass.h	/^struct gencodeGeneClass$/;"	s
gencodeGeneClassCommaIn	hg/lib/gencodeGeneClass.c	/^struct gencodeGeneClass *gencodeGeneClassCommaIn(char **pS, struct gencodeGeneClass *ret)$/;"	f
gencodeGeneClassCommaOut	hg/inc/gencodeGeneClass.h	65;"	d
gencodeGeneClassFree	hg/lib/gencodeGeneClass.c	/^void gencodeGeneClassFree(struct gencodeGeneClass **pEl)$/;"	f
gencodeGeneClassFreeList	hg/lib/gencodeGeneClass.c	/^void gencodeGeneClassFreeList(struct gencodeGeneClass **pList)$/;"	f
gencodeGeneClassLoad	hg/lib/gencodeGeneClass.c	/^struct gencodeGeneClass *gencodeGeneClassLoad(char **row)$/;"	f
gencodeGeneClassLoadAll	hg/lib/gencodeGeneClass.c	/^struct gencodeGeneClass *gencodeGeneClassLoadAll(char *fileName) $/;"	f
gencodeGeneClassLoadAllByChar	hg/lib/gencodeGeneClass.c	/^struct gencodeGeneClass *gencodeGeneClassLoadAllByChar(char *fileName, char chopper) $/;"	f
gencodeGeneClassLoadAllByTab	hg/inc/gencodeGeneClass.h	43;"	d
gencodeGeneClassOutput	hg/lib/gencodeGeneClass.c	/^void gencodeGeneClassOutput(struct gencodeGeneClass *el, FILE *f, char sep, char lastSep) $/;"	f
gencodeGeneClassStaticLoad	hg/lib/gencodeGeneClass.c	/^void gencodeGeneClassStaticLoad(char **row, struct gencodeGeneClass *ret)$/;"	f
gencodeGeneClassTabOut	hg/inc/gencodeGeneClass.h	62;"	d
gencodeIntron	hg/inc/gencodeIntron.h	/^struct gencodeIntron$/;"	s
gencodeIntronCommaIn	hg/lib/gencodeIntron.c	/^struct gencodeIntron *gencodeIntronCommaIn(char **pS, struct gencodeIntron *ret)$/;"	f
gencodeIntronCommaOut	hg/inc/gencodeIntron.h	91;"	d
gencodeIntronFree	hg/lib/gencodeIntron.c	/^void gencodeIntronFree(struct gencodeIntron **pEl)$/;"	f
gencodeIntronFreeList	hg/lib/gencodeIntron.c	/^void gencodeIntronFreeList(struct gencodeIntron **pList)$/;"	f
gencodeIntronLoad	hg/lib/gencodeIntron.c	/^struct gencodeIntron *gencodeIntronLoad(char **row)$/;"	f
gencodeIntronLoadAll	hg/lib/gencodeIntron.c	/^struct gencodeIntron *gencodeIntronLoadAll(char *fileName) $/;"	f
gencodeIntronLoadAllByChar	hg/lib/gencodeIntron.c	/^struct gencodeIntron *gencodeIntronLoadAllByChar(char *fileName, char chopper) $/;"	f
gencodeIntronLoadAllByTab	hg/inc/gencodeIntron.h	44;"	d
gencodeIntronLoadByQuery	hg/lib/gencodeIntron.c	/^struct gencodeIntron *gencodeIntronLoadByQuery(struct sqlConnection *conn, char *query, int rowOffset)$/;"	f
gencodeIntronOutput	hg/lib/gencodeIntron.c	/^void gencodeIntronOutput(struct gencodeIntron *el, FILE *f, char sep, char lastSep) $/;"	f
gencodeIntronSaveToDb	hg/lib/gencodeIntron.c	/^void gencodeIntronSaveToDb(struct sqlConnection *conn, struct gencodeIntron *el, char *tableName, int updateSize)$/;"	f
gencodeIntronSaveToDbEscaped	hg/lib/gencodeIntron.c	/^void gencodeIntronSaveToDbEscaped(struct sqlConnection *conn, struct gencodeIntron *el, char *tableName, int updateSize)$/;"	f
gencodeIntronStaticLoad	hg/lib/gencodeIntron.c	/^void gencodeIntronStaticLoad(char **row, struct gencodeIntron *ret)$/;"	f
gencodeIntronTabOut	hg/inc/gencodeIntron.h	88;"	d
gencodeIntronTableCreate	hg/lib/gencodeIntron.c	/^void gencodeIntronTableCreate(struct sqlConnection *conn, char *tableName, int indexSize)$/;"	f
gender	hg/inc/cnpSharpSample.h	/^    char *gender;	\/* Gender *\/$/;"	m	struct:cnpSharpSample
gene	hg/inc/arCOGs.h	/^    char *gene;	\/* standard name *\/$/;"	m	struct:arCOGs
gene	hg/inc/gbMiscDiff.h	/^    char *gene;	\/* gene name *\/$/;"	m	struct:gbMiscDiff
gene	hg/inc/geneSimilarities.h	/^    struct genePred *gene;   \/\/ target gene$/;"	m	struct:geneSim	typeref:struct:geneSim::genePred
gene	hg/inc/knownToSuper.h	/^    char *gene;	\/* Known gene ID *\/$/;"	m	struct:knownToSuper
gene	hg/inc/minGeneInfo.h	/^    char *gene;	\/* gene name *\/$/;"	m	struct:minGeneInfo
gene	inc/wormdna.h	/^    char *gene;                 \/* Something like unc-1 *\/$/;"	m	struct:wormCdnaInfo
gene1	hg/inc/lowelabArkinOperonScore.h	/^    char *gene1;	\/* name of gene1 *\/$/;"	m	struct:lowelabArkinOperonScore
gene1	hg/inc/lowelabTIGROperonScore.h	/^    char *gene1;	\/* name of gene1 *\/$/;"	m	struct:lowelabTIGROperonScore
gene2	hg/inc/lowelabArkinOperonScore.h	/^    char *gene2;	\/* name og gene2 *\/$/;"	m	struct:lowelabArkinOperonScore
gene2	hg/inc/lowelabTIGROperonScore.h	/^    char *gene2;	\/* name of gene2 *\/$/;"	m	struct:lowelabTIGROperonScore
geneAssoc	hg/inc/bgiGeneSnp.h	/^    char *geneAssoc;	\/* Association to gene: upstream, utr, exon, etc *\/$/;"	m	struct:bgiGeneSnp
geneBands	hg/inc/geneBands.h	/^struct geneBands$/;"	s
geneBandsCommaIn	hg/lib/geneBands.c	/^struct geneBands *geneBandsCommaIn(char **pS, struct geneBands *ret)$/;"	f
geneBandsCommaOut	hg/inc/geneBands.h	49;"	d
geneBandsFree	hg/lib/geneBands.c	/^void geneBandsFree(struct geneBands **pEl)$/;"	f
geneBandsFreeList	hg/lib/geneBands.c	/^void geneBandsFreeList(struct geneBands **pList)$/;"	f
geneBandsLoad	hg/lib/geneBands.c	/^struct geneBands *geneBandsLoad(char **row)$/;"	f
geneBandsLoadAll	hg/lib/geneBands.c	/^struct geneBands *geneBandsLoadAll(char *fileName) $/;"	f
geneBandsLoadWhere	hg/lib/geneBands.c	/^struct geneBands *geneBandsLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
geneBandsOutput	hg/lib/geneBands.c	/^void geneBandsOutput(struct geneBands *el, FILE *f, char sep, char lastSep) $/;"	f
geneBandsTabOut	hg/inc/geneBands.h	46;"	d
geneCdsSimilarity	hg/lib/geneSimilarities.c	/^static float geneCdsSimilarity(struct genePred *ga, struct genePred *gb)$/;"	f	file:
geneCheck	hg/inc/geneCheck.h	/^struct geneCheck$/;"	s
geneCheckCommaIn	hg/lib/geneCheck.c	/^struct geneCheck *geneCheckCommaIn(char **pS, struct geneCheck *ret)$/;"	f
geneCheckCommaOut	hg/inc/geneCheck.h	77;"	d
geneCheckDetails	hg/inc/geneCheckDetails.h	/^struct geneCheckDetails$/;"	s
geneCheckDetailsCommaIn	hg/lib/geneCheckDetails.c	/^struct geneCheckDetails *geneCheckDetailsCommaIn(char **pS, struct geneCheckDetails *ret)$/;"	f
geneCheckDetailsCommaOut	hg/inc/geneCheckDetails.h	60;"	d
geneCheckDetailsFree	hg/lib/geneCheckDetails.c	/^void geneCheckDetailsFree(struct geneCheckDetails **pEl)$/;"	f
geneCheckDetailsFreeList	hg/lib/geneCheckDetails.c	/^void geneCheckDetailsFreeList(struct geneCheckDetails **pList)$/;"	f
geneCheckDetailsLoad	hg/lib/geneCheckDetails.c	/^struct geneCheckDetails *geneCheckDetailsLoad(char **row)$/;"	f
geneCheckDetailsLoadAll	hg/lib/geneCheckDetails.c	/^struct geneCheckDetails *geneCheckDetailsLoadAll(char *fileName) $/;"	f
geneCheckDetailsLoadAllByChar	hg/lib/geneCheckDetails.c	/^struct geneCheckDetails *geneCheckDetailsLoadAllByChar(char *fileName, char chopper) $/;"	f
geneCheckDetailsLoadAllByTab	hg/inc/geneCheckDetails.h	38;"	d
geneCheckDetailsOutput	hg/lib/geneCheckDetails.c	/^void geneCheckDetailsOutput(struct geneCheckDetails *el, FILE *f, char sep, char lastSep) $/;"	f
geneCheckDetailsStaticLoad	hg/lib/geneCheckDetails.c	/^void geneCheckDetailsStaticLoad(char **row, struct geneCheckDetails *ret)$/;"	f
geneCheckDetailsTabOut	hg/inc/geneCheckDetails.h	57;"	d
geneCheckFree	hg/lib/geneCheck.c	/^void geneCheckFree(struct geneCheck **pEl)$/;"	f
geneCheckFreeList	hg/lib/geneCheck.c	/^void geneCheckFreeList(struct geneCheck **pList)$/;"	f
geneCheckLoad	hg/lib/geneCheck.c	/^struct geneCheck *geneCheckLoad(char **row)$/;"	f
geneCheckLoadAll	hg/lib/geneCheck.c	/^struct geneCheck *geneCheckLoadAll(char *fileName) $/;"	f
geneCheckLoadAllByChar	hg/lib/geneCheck.c	/^struct geneCheck *geneCheckLoadAllByChar(char *fileName, char chopper) $/;"	f
geneCheckLoadAllByTab	hg/inc/geneCheck.h	55;"	d
geneCheckOutput	hg/lib/geneCheck.c	/^void geneCheckOutput(struct geneCheck *el, FILE *f, char sep, char lastSep) $/;"	f
geneCheckStaticLoad	hg/lib/geneCheck.c	/^void geneCheckStaticLoad(char **row, struct geneCheck *ret)$/;"	f
geneCheckTabOut	hg/inc/geneCheck.h	74;"	d
geneCheckWidgetDetails	hg/lib/geneCheckWidget.c	/^void geneCheckWidgetDetails(struct cart *cart, struct geneCheck *gc,$/;"	f
geneCheckWidgetSummary	hg/lib/geneCheckWidget.c	/^void geneCheckWidgetSummary(struct geneCheck *gc, char *tblClass, char *caption)$/;"	f
geneCount	hg/inc/pscreen.h	/^    unsigned geneCount;	\/* Number of genes disrupted by this insert *\/$/;"	m	struct:pscreen
geneDesc	hg/inc/ensInfo.h	/^    char *geneDesc;	\/* Ensembl gene description *\/$/;"	m	struct:ensInfo
geneDesc	hg/inc/pgSiftPred.h	/^    char *geneDesc;	\/* gene description *\/$/;"	m	struct:pgSiftPred
geneDesc	hg/inc/vegaInfo.h	/^    char *geneDesc;	\/* Vega gene description *\/$/;"	m	struct:vegaInfo
geneDesc	hg/inc/vegaInfoZfish.h	/^    char *geneDesc;	\/* Vega gene description *\/$/;"	m	struct:vegaInfoZfish
geneDna	lib/oldGff.c	/^static boolean geneDna(struct gff *gff, struct gffGene *gene,$/;"	f	file:
geneExonSimilarity	hg/lib/geneSimilarities.c	/^static float geneExonSimilarity(struct genePred *ga, struct genePred *gb)$/;"	f	file:
geneFamilyDesc	hg/inc/hgnc.h	/^    char *geneFamilyDesc;	\/* Gene Family Description *\/$/;"	m	struct:hgnc
geneFamilyNm	hg/inc/hgnc.h	/^    char *geneFamilyNm;	\/* Gene Family Name *\/$/;"	m	struct:hgnc
geneFinder	hg/inc/hgGene.h	/^    unsigned geneFinder;	\/* Program that made prediction *\/$/;"	m	struct:hgGene
geneFinder	hg/inc/hgGene.h	/^struct geneFinder$/;"	s
geneFinder	inc/hgGene.h	/^    unsigned geneFinder;	\/* Program that made prediction *\/$/;"	m	struct:hgGene
geneFinder	inc/hgGene.h	/^struct geneFinder$/;"	s
geneFinderCommaIn	hg/lib/hgGene.c	/^struct geneFinder *geneFinderCommaIn(char **pS)$/;"	f
geneFinderCommaOut	hg/inc/hgGene.h	42;"	d
geneFinderCommaOut	inc/hgGene.h	42;"	d
geneFinderFree	hg/lib/hgGene.c	/^void geneFinderFree(struct geneFinder **pEl)$/;"	f
geneFinderFreeList	hg/lib/hgGene.c	/^void geneFinderFreeList(struct geneFinder **pList)$/;"	f
geneFinderLoad	hg/lib/hgGene.c	/^struct geneFinder *geneFinderLoad(char **row)$/;"	f
geneFinderOutput	hg/lib/hgGene.c	/^void geneFinderOutput(struct geneFinder *el, FILE *f, char sep, char lastSep) $/;"	f
geneFinderStaticLoad	hg/lib/hgGene.c	/^void geneFinderStaticLoad(char **row, struct geneFinder *ret)$/;"	f
geneFinderTabOut	hg/inc/hgGene.h	39;"	d
geneFinderTabOut	inc/hgGene.h	39;"	d
geneGraph	hg/inc/geneGraph.h	/^struct geneGraph$/;"	s
geneId	hg/inc/HInv.h	/^    char *geneId;	\/* gene ID *\/$/;"	m	struct:HInv
geneId	hg/inc/ccdsGeneMap.h	/^    char *geneId;	\/* Id of other gene *\/$/;"	m	struct:ccdsGeneMap
geneId	hg/inc/ensInfo.h	/^    char *geneId;	\/* Ensembl gene ID *\/$/;"	m	struct:ensInfo
geneId	hg/inc/ensXRefZfish.h	/^    char *geneId;	\/* ZFIN Gene Symbol (formerly LocusLink) ID *\/$/;"	m	struct:ensXRefZfish
geneId	hg/inc/fbTables.h	/^    char *geneId;	\/* FlyBase Gene ID *\/$/;"	m	struct:fbTranscript
geneId	hg/inc/fbTables.h	/^    char *geneId;	\/* FlyBase ID *\/$/;"	m	struct:fbGene
geneId	hg/inc/fbTables.h	/^    char *geneId;	\/* FlyBase ID *\/$/;"	m	struct:fbSynonym
geneId	hg/inc/fbTables.h	/^    char *geneId;	\/* Flybase Gene ID *\/$/;"	m	struct:fbGo
geneId	hg/inc/fbTables.h	/^    char *geneId;	\/* Flybase Gene ID *\/$/;"	m	struct:fbPhenotype
geneId	hg/inc/fbTables.h	/^    char *geneId;	\/* Flybase Gene ID *\/$/;"	m	struct:fbRole
geneId	hg/inc/fbTables.h	/^    char *geneId;	\/* Flybase ID of gene *\/$/;"	m	struct:fbAllele
geneId	hg/inc/gencodeGeneClass.h	/^    char *geneId;	\/* Gene ID for Gencode gene *\/$/;"	m	struct:gencodeGeneClass
geneId	hg/inc/gencodeIntron.h	/^    char *geneId;	\/* Gene_id from GTF *\/$/;"	m	struct:gencodeIntron
geneId	hg/inc/knownInfo.h	/^    char *geneId;	\/* Gene (not trascript) id *\/$/;"	m	struct:knownInfo
geneId	hg/inc/knownMore.h	/^    char *geneId;	\/* Gene (not transcript) Genie ID *\/$/;"	m	struct:knownMore
geneId	hg/inc/pgSiftPred.h	/^    char *geneId;	\/* gene ID, Ensembl *\/$/;"	m	struct:pgSiftPred
geneId	hg/inc/refLink.h	/^    unsigned geneId;	\/* pointer to geneName table *\/$/;"	m	struct:refLink
geneId	hg/inc/vegaInfo.h	/^    char *geneId;	\/* Vega gene ID *\/$/;"	m	struct:vegaInfo
geneId	hg/inc/vegaInfoZfish.h	/^    char *geneId;	\/* Vega gene ID (OTTER ID) *\/$/;"	m	struct:vegaInfoZfish
geneId	inc/gff.h	/^    char *geneId;    \/* gene_id in GTF, NULL in GFF.  Not allocated here. *\/$/;"	m	struct:gffLine
geneIdHash	inc/gff.h	/^    struct hash *geneIdHash;    \/* Hash of all geneIds. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::hash
geneIdList	inc/gff.h	/^    struct gffGeneId *geneIdList;  \/* List of all gene ID's. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::gffGeneId
geneIds	hg/inc/pscreen.h	/^    char **geneIds;	\/* IDs of genes disrupted *\/$/;"	m	struct:pscreen
geneName	hg/inc/bgiGeneSnp.h	/^    char *geneName;	\/* Name of BGI gene. *\/$/;"	m	struct:bgiGeneSnp
geneName	hg/inc/fbTables.h	/^    char *geneName;	\/* Gene name - up to a couple of words *\/$/;"	m	struct:fbGene
geneName	hg/inc/kgMapName.h	/^    char *geneName;	\/* gene name *\/$/;"	m	struct:kgMapName
geneName	hg/inc/knownInfo.h	/^    unsigned geneName;	\/* Connect to geneName table *\/$/;"	m	struct:knownInfo
geneName	hg/inc/pgPolyphenPred.h	/^    char *geneName;	\/* gene name *\/$/;"	m	struct:pgPolyphenPred
geneName	hg/inc/pgSiftPred.h	/^    char *geneName;	\/* gene name *\/$/;"	m	struct:pgSiftPred
geneName	hg/inc/transMapGene.h	/^    char *geneName;	\/* gene name *\/$/;"	m	struct:transMapGene
geneName	inc/gff.h	/^    char *geneName;       \/* gene_name or NULL in GTF, NULL in GFF. Not allocated here. *\/$/;"	m	struct:gffLine
geneNames	hg/inc/zdobnovSynt.h	/^    char **geneNames;	\/* Names of genes (from other species) *\/$/;"	m	struct:zdobnovSynt
geneOverlap	hg/inc/pseudoGeneLink.h	/^    unsigned geneOverlap;	\/* bases overlapping *\/$/;"	m	struct:pseudoGeneLink
geneOverlap	hg/inc/retroMrnaInfo.h	/^    unsigned geneOverlap;	\/* bases overlapping col21 *\/$/;"	m	struct:retroMrnaInfo
geneOverlap	hg/inc/ucscRetroInfo.h	/^    unsigned geneOverlap;	\/* bases overlapping col21 *\/$/;"	m	struct:ucscRetroInfo
genePixBodyPart	hg/lib/genePix.c	/^char *genePixBodyPart(struct sqlConnection *conn, int id)$/;"	f
genePixContributors	hg/lib/genePix.c	/^char *genePixContributors(struct sqlConnection *conn, int id)$/;"	f
genePixFullSizePath	hg/lib/genePix.c	/^char *genePixFullSizePath(struct sqlConnection *conn, int id)$/;"	f
genePixGenbank	hg/lib/genePix.c	/^struct slName *genePixGenbank(struct sqlConnection *conn, int id)$/;"	f
genePixGeneName	hg/lib/genePix.c	/^struct slName *genePixGeneName(struct sqlConnection *conn, int id)$/;"	f
genePixItemUrl	hg/lib/genePix.c	/^char *genePixItemUrl(struct sqlConnection *conn, int id)$/;"	f
genePixMaxAge	hg/inc/genePix.h	104;"	d
genePixOnSameGene	hg/lib/genePix.c	/^struct slInt *genePixOnSameGene(struct sqlConnection *conn, int id)$/;"	f
genePixOrganism	hg/lib/genePix.c	/^char *genePixOrganism(struct sqlConnection *conn, int id)$/;"	f
genePixPubUrl	hg/lib/genePix.c	/^char *genePixPubUrl(struct sqlConnection *conn, int id)$/;"	f
genePixPublication	hg/lib/genePix.c	/^char *genePixPublication(struct sqlConnection *conn, int id)$/;"	f
genePixRefSeq	hg/lib/genePix.c	/^struct slName *genePixRefSeq(struct sqlConnection *conn, int id)$/;"	f
genePixScreenSizePath	hg/lib/genePix.c	/^char *genePixScreenSizePath(struct sqlConnection *conn, int id)$/;"	f
genePixSearchType	hg/inc/genePix.h	/^enum genePixSearchType $/;"	g
genePixSelectGenbank	hg/lib/genePix.c	/^struct slInt *genePixSelectGenbank(struct sqlConnection *conn, char *acc)$/;"	f
genePixSelectLocusLink	hg/lib/genePix.c	/^struct slInt *genePixSelectLocusLink(struct sqlConnection *conn, char *id)$/;"	f
genePixSelectMulti	hg/lib/genePix.c	/^struct slInt *genePixSelectMulti($/;"	f
genePixSelectNamed	hg/lib/genePix.c	/^struct slInt *genePixSelectNamed(struct sqlConnection *conn,$/;"	f
genePixSelectRefSeq	hg/lib/genePix.c	/^struct slInt *genePixSelectRefSeq(struct sqlConnection *conn, char *acc)$/;"	f
genePixSelectUniProt	hg/lib/genePix.c	/^struct slInt *genePixSelectUniProt(struct sqlConnection *conn, char *acc)$/;"	f
genePixSetUrl	hg/lib/genePix.c	/^char *genePixSetUrl(struct sqlConnection *conn, int id)$/;"	f
genePixSliceType	hg/lib/genePix.c	/^char *genePixSliceType(struct sqlConnection *conn, int id)$/;"	f
genePixStage	hg/lib/genePix.c	/^char *genePixStage(struct sqlConnection *conn, int id, boolean doLong)$/;"	f
genePixSubmitId	hg/lib/genePix.c	/^char *genePixSubmitId(struct sqlConnection *conn, int id)$/;"	f
genePixThumbSizePath	hg/lib/genePix.c	/^char *genePixThumbSizePath(struct sqlConnection *conn, int id)$/;"	f
genePixTreatment	hg/lib/genePix.c	/^char *genePixTreatment(struct sqlConnection *conn, int id)$/;"	f
genePixUniProt	hg/lib/genePix.c	/^struct slName *genePixUniProt(struct sqlConnection *conn, int id)$/;"	f
genePred	hg/inc/genePred.h	/^struct genePred$/;"	s
genePredAddExonFrames	hg/lib/genePred.c	/^void genePredAddExonFrames(struct genePred *gp)$/;"	f
genePredAddGenbankCds	hg/lib/genePred.c	/^void genePredAddGenbankCds(struct psl *psl, struct genbankCds* cds, $/;"	f
genePredAllFlds	hg/inc/genePred.h	/^    genePredAllFlds       = 0xFF   \/* include all extended fields *\/$/;"	e	enum:genePredFields
genePredBases	hg/lib/genePred.c	/^int genePredBases(struct genePred *gp)$/;"	f
genePredBasicSql	hg/inc/genePred.h	/^    genePredBasicSql = 0x00, \/* used if nothing special *\/$/;"	e	enum:genePredCreateOpts
genePredCdsExon	hg/lib/genePred.c	/^boolean genePredCdsExon(struct genePred *gp, int iExon, int *startPtr, int *endPtr)$/;"	f
genePredCdsSize	hg/lib/genePred.c	/^int genePredCdsSize(struct genePred *gp)$/;"	f
genePredCdsStatFld	hg/inc/genePred.h	/^    genePredCdsStatFld    = 0x04,  \/* cdsStart\/EndStat fields *\/$/;"	e	enum:genePredFields
genePredCdsStatStr	hg/lib/genePred.c	/^char *genePredCdsStatStr(enum cdsStatus stat)$/;"	f
genePredCfgUi	hg/lib/hui.c	/^void genePredCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed)$/;"	f
genePredCheck	hg/lib/genePred.c	/^int genePredCheck(char *desc, FILE* out, int chromSize, $/;"	f
genePredCmp	hg/lib/genePred.c	/^int genePredCmp(const void *va, const void *vb)$/;"	f
genePredCodingBases	hg/lib/genePred.c	/^int genePredCodingBases(struct genePred *gp)$/;"	f
genePredCommaIn	hg/lib/genePred.c	/^struct genePred *genePredCommaIn(char **pS, struct genePred *ret)$/;"	f
genePredCommaOut	hg/inc/genePred.h	134;"	d
genePredCreateOpts	hg/inc/genePred.h	/^enum genePredCreateOpts$/;"	g
genePredDefaultFormat	hg/lib/hgFindSpecCustom.c	/^static char *genePredDefaultFormat =$/;"	v	file:
genePredDropDown	hg/lib/hui.c	/^char *genePredDropDown(struct cart *cart, struct hash *trackHash,$/;"	f
genePredExonFramesFld	hg/inc/genePred.h	/^    genePredExonFramesFld = 0x08,  \/* exonFrames field *\/$/;"	e	enum:genePredFields
genePredExtLoad	hg/lib/genePred.c	/^struct genePred *genePredExtLoad(char **row, int numCols)$/;"	f
genePredExtLoadAll	hg/lib/genePred.c	/^struct genePred *genePredExtLoadAll(char *fileName)$/;"	f
genePredFields	hg/inc/genePred.h	/^enum genePredFields$/;"	g
genePredFree	hg/lib/genePred.c	/^void genePredFree(struct genePred **pEl)$/;"	f
genePredFreeList	hg/lib/genePred.c	/^void genePredFreeList(struct genePred **pList)$/;"	f
genePredFromGroupedGff	hg/lib/genePred.c	/^struct genePred *genePredFromGroupedGff(struct gffFile *gff, struct gffGroup *group, char *name,$/;"	f
genePredFromGroupedGtf	hg/lib/genePred.c	/^struct genePred *genePredFromGroupedGtf(struct gffFile *gff, struct gffGroup *group, char *name,$/;"	f
genePredFromGxfOpts	hg/inc/genePred.h	/^enum genePredFromGxfOpts$/;"	g
genePredFromPsl	hg/lib/genePred.c	/^struct genePred *genePredFromPsl(struct psl *psl, int cdsStart, int cdsEnd,$/;"	f
genePredFromPsl2	hg/lib/genePred.c	/^struct genePred *genePredFromPsl2(struct psl *psl, unsigned optFields,$/;"	f
genePredFromPsl3	hg/lib/genePred.c	/^struct genePred *genePredFromPsl3(struct psl *psl,  struct genbankCds* cds, $/;"	f
genePredFromPslOpts	hg/inc/genePred.h	/^enum genePredFromPslOpts$/;"	g
genePredGetCreateSql	hg/lib/genePred.c	/^char* genePredGetCreateSql(char* table, unsigned optFields, unsigned options,$/;"	f
genePredGrow	hg/lib/genePred.c	/^void genePredGrow(struct genePred *gp, unsigned *exonSpacePtr)$/;"	f
genePredGxfDefaults	hg/inc/genePred.h	/^    genePredGxfDefaults = 0x00,            \/* used if nothing special *\/$/;"	e	enum:genePredFromGxfOpts
genePredGxfGeneNameAsName2	hg/inc/genePred.h	/^    genePredGxfGeneNameAsName2 = 0x02      \/* use gene_name instead of gene_id$/;"	e	enum:genePredFromGxfOpts
genePredGxfImpliedStopAfterCds	hg/inc/genePred.h	/^    genePredGxfImpliedStopAfterCds = 0x01, \/* stop codon is implied outside of$/;"	e	enum:genePredFromGxfOpts
genePredLoad	hg/lib/genePred.c	/^struct genePred *genePredLoad(char **row)$/;"	f
genePredLoadAll	hg/lib/genePred.c	/^struct genePred *genePredLoadAll(char *fileName) $/;"	f
genePredLoadAllByChar	hg/lib/genePred.c	/^struct genePred *genePredLoadAllByChar(char *fileName, char chopper) $/;"	f
genePredLoadAllByTab	hg/inc/genePred.h	112;"	d
genePredName2Fld	hg/inc/genePred.h	/^    genePredName2Fld      = 0x02,  \/* name2 field *\/$/;"	e	enum:genePredFields
genePredNameCmp	hg/lib/genePred.c	/^int genePredNameCmp(const void *va, const void *vb)$/;"	f
genePredNew	hg/lib/genePred.c	/^struct genePred *genePredNew(char *name, char *chrom, char strand,$/;"	f
genePredNmdTarget	hg/lib/genePred.c	/^boolean genePredNmdTarget(struct genePred *gp) $/;"	f
genePredNoOptFld	hg/inc/genePred.h	/^    genePredNoOptFld      = 0x00,  \/* use for no opt fields *\/$/;"	e	enum:genePredFields
genePredOutput	hg/lib/genePred.c	/^void genePredOutput(struct genePred *el, FILE *f, char sep, char lastSep) $/;"	f
genePredPslCdsMod3	hg/inc/genePred.h	/^    genePredPslCdsMod3  = 0x01   \/* only merge gaps in CDS if mod 3 *\/$/;"	e	enum:genePredFromPslOpts
genePredPslDefaults	hg/inc/genePred.h	/^    genePredPslDefaults = 0x00,  \/* used if nothing special *\/$/;"	e	enum:genePredFromPslOpts
genePredRc	hg/lib/genePred.c	/^void genePredRc(struct genePred *gp, int chromSize)$/;"	f
genePredReader	hg/lib/genePredReader.c	/^struct genePredReader$/;"	s	file:
genePredReaderAll	hg/lib/genePredReader.c	/^struct genePred *genePredReaderAll(struct genePredReader* gpr)$/;"	f
genePredReaderFile	hg/lib/genePredReader.c	/^struct genePredReader *genePredReaderFile(char* gpFile, char* chrom)$/;"	f
genePredReaderFree	hg/lib/genePredReader.c	/^void genePredReaderFree(struct genePredReader** gprPtr)$/;"	f
genePredReaderLoadFile	hg/lib/genePredReader.c	/^struct genePred *genePredReaderLoadFile(char* gpFile, char* chrom)$/;"	f
genePredReaderLoadQuery	hg/lib/genePredReader.c	/^struct genePred *genePredReaderLoadQuery(struct sqlConnection* conn,$/;"	f
genePredReaderLoadRangeQuery	hg/lib/genePredReader.c	/^struct genePred *genePredReaderLoadRangeQuery(struct sqlConnection* conn,$/;"	f
genePredReaderNext	hg/lib/genePredReader.c	/^struct genePred *genePredReaderNext(struct genePredReader* gpr)$/;"	f
genePredReaderQuery	hg/lib/genePredReader.c	/^struct genePredReader *genePredReaderQuery(struct sqlConnection* conn,$/;"	f
genePredReaderRangeQuery	hg/lib/genePredReader.c	/^struct genePredReader *genePredReaderRangeQuery(struct sqlConnection* conn,$/;"	f
genePredScoreFld	hg/inc/genePred.h	/^    genePredScoreFld      = 0x01,  \/* score field *\/$/;"	e	enum:genePredFields
genePredStdInsertMergeSize	hg/inc/genePred.h	94;"	d
genePredTabOut	hg/inc/genePred.h	131;"	d
genePredToBed	hg/lib/liftOver.c	/^struct bed *genePredToBed(struct genePred *gp)$/;"	f
genePredToBinKeeper	hg/lib/genePredReader.c	/^struct hash *genePredToBinKeeper(char *sizeFileName, char *gpFile)$/;"	f
genePredToGenomicSequence	hg/lib/annoGratorGpVar.c	/^struct dnaSeq *genePredToGenomicSequence(struct genePred *pred, struct twoBitFile *tbf)$/;"	f
genePredToPsl	hg/lib/gpFx.c	/^static struct psl *genePredToPsl(struct genePred *pred)$/;"	f	file:
genePredToRangeTree	hg/lib/genePred.c	/^struct rbTree *genePredToRangeTree(struct genePred *gp, boolean cdsOnly)$/;"	f
genePredWithBin	hg/inc/genePred.h	/^    genePredWithBin = 0x01   \/* create bin column *\/$/;"	e	enum:genePredCreateOpts
geneSim	hg/inc/geneSimilarities.h	/^struct geneSim$/;"	s
geneSimCmp	hg/lib/geneSimilarities.c	/^int geneSimCmp(const void *va, const void *vb)$/;"	f
geneSimFreeList	hg/lib/geneSimilarities.c	/^static void geneSimFreeList(struct geneSim **gss)$/;"	f	file:
geneSimNew	hg/lib/geneSimilarities.c	/^static struct geneSim *geneSimNew(struct genePred *gene, float sim)$/;"	f	file:
geneSimilarities	hg/inc/geneSimilarities.h	/^struct geneSimilarities$/;"	s
geneSimilaritiesBuild	hg/lib/geneSimilarities.c	/^struct geneSimilarities *geneSimilaritiesBuild(struct sqlConnection *conn,$/;"	f
geneSimilaritiesBuildAll	hg/lib/geneSimilarities.c	/^struct geneSimilarities *geneSimilaritiesBuildAll(struct sqlConnection *conn,$/;"	f
geneSimilaritiesBuildAt	hg/lib/geneSimilarities.c	/^struct geneSimilarities *geneSimilaritiesBuildAt(struct sqlConnection *conn,$/;"	f
geneSimilaritiesFree	hg/lib/geneSimilarities.c	/^void geneSimilaritiesFree(struct geneSimilarities **gssPtr)$/;"	f
geneSimilaritiesFreeList	hg/lib/geneSimilarities.c	/^void geneSimilaritiesFreeList(struct geneSimilarities **gssList)$/;"	f
geneSimilaritiesNew	hg/lib/geneSimilarities.c	/^struct geneSimilarities *geneSimilaritiesNew(struct genePred *query,$/;"	f
geneSym	hg/inc/fbTables.h	/^    char *geneSym;	\/* Short gene symbol *\/$/;"	m	struct:fbGene
geneSymbol	hg/inc/ensXRefZfish.h	/^    char *geneSymbol;	\/* Official ZFIN Gene Symbol *\/$/;"	m	struct:ensXRefZfish
geneSymbol	hg/inc/kgXref.h	/^    char *geneSymbol;	\/* Gene Symbol *\/$/;"	m	struct:kgXref
geneSymbol	hg/inc/omimTitle.h	/^    char *geneSymbol;	\/* Gene *\/$/;"	m	struct:omimTitle
geneSymbol	hg/inc/variome.h	/^    char *geneSymbol;	\/* knownGene kgXref geneSymbol name *\/$/;"	m	struct:variome
geneSymbol	hg/inc/wikiTrack.h	/^    char *geneSymbol;	\/* knownGene kgXref geneSymbol name *\/$/;"	m	struct:wikiTrack
geneTree	hg/inc/geneTree.h	/^struct geneTree$/;"	s
geneTreeCommaIn	hg/lib/geneTree.c	/^struct geneTree *geneTreeCommaIn(char **pS, struct geneTree *ret)$/;"	f
geneTreeCommaOut	hg/inc/geneTree.h	56;"	d
geneTreeFree	hg/lib/geneTree.c	/^void geneTreeFree(struct geneTree **pEl)$/;"	f
geneTreeFreeList	hg/lib/geneTree.c	/^void geneTreeFreeList(struct geneTree **pList)$/;"	f
geneTreeLoad	hg/lib/geneTree.c	/^struct geneTree *geneTreeLoad(char **row)$/;"	f
geneTreeLoadAll	hg/lib/geneTree.c	/^struct geneTree *geneTreeLoadAll(char *fileName) $/;"	f
geneTreeLoadAllByChar	hg/lib/geneTree.c	/^struct geneTree *geneTreeLoadAllByChar(char *fileName, char chopper) $/;"	f
geneTreeLoadAllByTab	hg/inc/geneTree.h	34;"	d
geneTreeOutput	hg/lib/geneTree.c	/^void geneTreeOutput(struct geneTree *el, FILE *f, char sep, char lastSep) $/;"	f
geneTreeStaticLoad	hg/lib/geneTree.c	/^void geneTreeStaticLoad(char **row, struct geneTree *ret)$/;"	f
geneTreeTabOut	hg/inc/geneTree.h	53;"	d
geneType	hg/inc/sanger22extra.h	/^    char *geneType;	\/* Type field from Sanger gene GFFs *\/$/;"	m	struct:sanger22extra
generic	hg/inc/soterm.h	/^	    } generic;$/;"	m	union:soCall::__anon12	typeref:struct:soCall::__anon12::__anon14
genes	hg/inc/geneSimilarities.h	/^    struct geneSim *genes;         \/\/ similar genes, sorted in descending order$/;"	m	struct:geneSimilarities	typeref:struct:geneSimilarities::geneSim
genes	hg/inc/gwasCatalog.h	/^    char *genes;	\/* Reported Gene(s) *\/$/;"	m	struct:gwasCatalog
genes	hg/inc/tigrOperon.h	/^    char **genes;	\/* gene names *\/$/;"	m	struct:tigrOperon
genes	inc/oldGff.h	/^    struct gffGene *genes;$/;"	m	struct:gff	typeref:struct:gff::gffGene
genethonAvg	hg/inc/recombRate.h	/^    float genethonAvg;	\/* Calculated Genethon recombination rate *\/$/;"	m	struct:recombRate
genethonChr	hg/inc/stsInfo.h	/^    char *genethonChr;	\/* Chromosome in Genethon map *\/$/;"	m	struct:stsInfo
genethonChr	hg/inc/stsInfo2.h	/^    char *genethonChr;	\/* Chromosome in Genethon map *\/$/;"	m	struct:stsInfo2
genethonChrom	hg/inc/stsMap.h	/^    char *genethonChrom;	\/* Chromosome (no chr) from Genethon map or 0 if none *\/$/;"	m	struct:stsMap
genethonChrom	hg/inc/stsMarker.h	/^    char *genethonChrom;	\/* Chromosome (no chr) from Genethon map or 0 if none *\/$/;"	m	struct:stsMarker
genethonFemale	hg/inc/recombRate.h	/^    float genethonFemale;	\/* Calculated Genethon female recombination rate *\/$/;"	m	struct:recombRate
genethonLOD	hg/inc/stsInfo.h	/^    float genethonLOD;	\/* LOD score in Genethon map *\/$/;"	m	struct:stsInfo
genethonLOD	hg/inc/stsInfo2.h	/^    float genethonLOD;	\/* LOD score in Genethon map *\/$/;"	m	struct:stsInfo2
genethonMale	hg/inc/recombRate.h	/^    float genethonMale;	\/* Calculated Genethon male recombination rate *\/$/;"	m	struct:recombRate
genethonName	hg/inc/stsInfo.h	/^    char *genethonName;	\/* Name in Genethon map *\/$/;"	m	struct:stsInfo
genethonName	hg/inc/stsInfo2.h	/^    char *genethonName;	\/* Name in Genethon map *\/$/;"	m	struct:stsInfo2
genethonPos	hg/inc/stsInfo.h	/^    float genethonPos;	\/* Position in Genethon map *\/$/;"	m	struct:stsInfo
genethonPos	hg/inc/stsInfo2.h	/^    float genethonPos;	\/* Position in Genethon map *\/$/;"	m	struct:stsInfo2
genethonPos	hg/inc/stsMap.h	/^    float genethonPos;	\/* Position on Genethon map *\/$/;"	m	struct:stsMap
genethonPos	hg/inc/stsMarker.h	/^    float genethonPos;	\/* Position on Genethon map *\/$/;"	m	struct:stsMarker
geneticCode	hg/inc/taxonNode.h	/^    unsigned geneticCode;	\/* genetic code used by species, see ncbiGencode *\/$/;"	m	struct:taxonNode
geneticPos	hg/inc/stsInfoMouse.h	/^    float geneticPos;	\/* Position in Genetic map. -2 if N\/A, -1 if syntenic  *\/$/;"	m	struct:stsInfoMouse
genieDir	lib/wormdna.c	/^static char *genieDir = NULL;$/;"	v	file:
genoContigIx	inc/supStitch.h	/^    int genoContigIx;           \/* Index of contig inside of seq. *\/$/;"	m	struct:ssBundle
genoEnd	hg/inc/rmskOut.h	/^    unsigned genoEnd;	\/* End in genomic sequence *\/$/;"	m	struct:rmskOut
genoFind	inc/genoFind.h	/^struct genoFind$/;"	s
genoFindFree	jkOwnLib/genoFind.c	/^void genoFindFree(struct genoFind **pGenoFind)$/;"	f
genoIx	inc/supStitch.h	/^    int genoIx;                 \/* Index of bac in associated PatSpace. *\/$/;"	m	struct:ssBundle
genoLay	hg/inc/genoLay.h	/^struct genoLay$/;"	s
genoLayAllOneLine	hg/inc/genoLay.h	24;"	d
genoLayChrom	hg/inc/genoLay.h	/^struct genoLayChrom$/;"	s
genoLayChromCmpName	hg/lib/genoLay.c	/^int genoLayChromCmpName(const void *va, const void *vb)$/;"	f
genoLayDbChroms	hg/lib/genoLay.c	/^struct genoLayChrom *genoLayDbChroms(struct sqlConnection *conn, $/;"	f
genoLayDbChromsExt	hg/lib/genoLay.c	/^struct genoLayChrom *genoLayDbChromsExt(struct sqlConnection *conn, $/;"	f
genoLayDrawBandedChroms	hg/lib/genoLay.c	/^void genoLayDrawBandedChroms(struct genoLay *gl, struct hvGfx *hvg, char *db,$/;"	f
genoLayDrawChromLabels	hg/lib/genoLay.c	/^void genoLayDrawChromLabels(struct genoLay *gl, struct hvGfx *hvg, int color)$/;"	f
genoLayDrawSimpleChroms	hg/lib/genoLay.c	/^void genoLayDrawSimpleChroms(struct genoLay *gl,$/;"	f
genoLayDump	hg/lib/genoLay.c	/^void genoLayDump(struct genoLay *gl)$/;"	f
genoLayNew	hg/lib/genoLay.c	/^struct genoLay *genoLayNew(struct genoLayChrom *chromList,$/;"	f
genoLayOnePerLine	hg/inc/genoLay.h	23;"	d
genoLayTwoPerLine	hg/inc/genoLay.h	22;"	d
genoLeft	hg/inc/rmskOut.h	/^    int genoLeft;	\/* Size left in genomic sequence *\/$/;"	m	struct:rmskOut
genoMapCount	hg/inc/txInfo.h	/^    int genoMapCount;	\/* Number of times source aligns in genome. *\/$/;"	m	struct:txInfo
genoName	hg/inc/rmskOut.h	/^    char *genoName;	\/* Genomic sequence name *\/$/;"	m	struct:rmskOut
genoRegion	hg/inc/dbRIP.h	/^    char *genoRegion;	\/* genome region *\/$/;"	m	struct:dbRIP
genoSeq	hg/inc/geneGraph.h	/^    struct dnaSeq *genoSeq;                 \/* target sequence defined by coordinates *\/$/;"	m	struct:ggMrnaCluster	typeref:struct:ggMrnaCluster::dnaSeq
genoSeq	hg/inc/ggMrnaAli.h	/^    struct dnaSeq *genoSeq;	\/* target sequences. *\/$/;"	m	struct:ggMrnaInput	typeref:struct:ggMrnaInput::dnaSeq
genoSeq	inc/supStitch.h	/^    bioSeq *genoSeq;     \/* Genomic sequence (not owned by bundle.) *\/$/;"	m	struct:ssBundle
genoStart	hg/inc/rmskOut.h	/^    unsigned genoStart;	\/* Start in genomic sequence *\/$/;"	m	struct:rmskOut
genome	hg/inc/dbDb.h	/^    char *genome;	\/* Unifying genome collection to which an assembly belongs *\/$/;"	m	struct:dbDb
genome	hg/inc/defaultDb.h	/^    char *genome;	\/* Unifying genome collection for which an assembly is the default *\/$/;"	m	struct:defaultDb
genome	hg/inc/hdb.h	/^    char *genome;	\/* Genome name. *\/$/;"	m	struct:blatServerTable
genomeBuildName	inc/gff3.h	/^    char *genomeBuildName;               \/* name or version of genome build *\/$/;"	m	struct:gff3File
genomeBuildSource	inc/gff3.h	/^    char *genomeBuildSource;             \/* source of genome build *\/$/;"	m	struct:gff3File
genomeDb	hg/inc/customTrack.h	/^    char *genomeDb;             \/* Genome database the track is associated *\/$/;"	m	struct:customTrack
genomeHash	hg/inc/trackHub.h	/^    struct hash *genomeHash;	\/* Hash of genomeList keyed by genome name. *\/$/;"	m	struct:trackHub	typeref:struct:trackHub::hash
genomeList	hg/inc/trackHub.h	/^    struct trackHubGenome *genomeList;	\/* List of associated genomes. *\/$/;"	m	struct:trackHub	typeref:struct:trackHub::trackHubGenome
genomePos	hg/lib/hgFind.c	/^static struct hgPositions *genomePos(char *db, char *spec, char **retChromName, $/;"	f	file:
genomeRangeTree	inc/genomeRangeTree.h	/^struct genomeRangeTree$/;"	s
genomeRangeTreeAdd	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeAdd(struct genomeRangeTree *tree, char *chrom, int start, int end)$/;"	f
genomeRangeTreeAddVal	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeAddVal(struct genomeRangeTree *tree, char *chrom, int start, int end, void *val, void *(*mergeVals)(void *existing, void*new))$/;"	f
genomeRangeTreeAddValCount	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeAddValCount(struct genomeRangeTree *tree, char *chrom, int start, int end)$/;"	f
genomeRangeTreeAddValList	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeAddValList(struct genomeRangeTree *tree, char *chrom, int start, int end, void *val)$/;"	f
genomeRangeTreeAllOverlapping	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeAllOverlapping(struct genomeRangeTree *tree, char *chrom, int start, int end)$/;"	f
genomeRangeTreeFile	hg/inc/genomeRangeTreeFile.h	/^struct genomeRangeTreeFile $/;"	s
genomeRangeTreeFileChromSeek	hg/lib/genomeRangeTreeFile.c	/^int genomeRangeTreeFileChromSeek(struct genomeRangeTreeFile *tf, char *chrom)$/;"	f
genomeRangeTreeFileFree	hg/lib/genomeRangeTreeFile.c	/^struct genomeRangeTree *genomeRangeTreeFileFree(struct genomeRangeTreeFile **pFile)$/;"	f
genomeRangeTreeFileIntersectionDetailed	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeFileIntersectionDetailed(struct genomeRangeTreeFile *tf1, struct genomeRangeTreeFile *tf2, char *outFile, int *numChroms, int *nodes, unsigned *size, boolean saveMem)$/;"	f
genomeRangeTreeFileNew	hg/lib/genomeRangeTreeFile.c	/^struct genomeRangeTreeFile *genomeRangeTreeFileNew(struct genomeRangeTree *tree, char *fileName)$/;"	f
genomeRangeTreeFileReadData	hg/lib/genomeRangeTreeFile.c	/^struct genomeRangeTree *genomeRangeTreeFileReadData(struct genomeRangeTreeFile *f)$/;"	f
genomeRangeTreeFileReadHeader	hg/lib/genomeRangeTreeFile.c	/^struct genomeRangeTreeFile *genomeRangeTreeFileReadHeader(char *fileName)$/;"	f
genomeRangeTreeFileStats	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeFileStats(char *fileName, int *numChroms, int *nodes, int *size)$/;"	f
genomeRangeTreeFileUnion	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeFileUnion(struct genomeRangeTreeFile *tf1, struct genomeRangeTreeFile *tf2, char *outFile)$/;"	f
genomeRangeTreeFileUnionDetailed	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeFileUnionDetailed(struct genomeRangeTreeFile *tf1, struct genomeRangeTreeFile *tf2, char *outFile, int *numChroms, int *nodes, unsigned *size, boolean saveMem, boolean orDirectToFile)$/;"	f
genomeRangeTreeFileWriteData	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeFileWriteData(struct genomeRangeTreeFile *f)$/;"	f
genomeRangeTreeFileWriteHeader	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeFileWriteHeader(struct genomeRangeTreeFile *f)$/;"	f
genomeRangeTreeFileWriteHeaderDetailed	hg/lib/genomeRangeTreeFile.c	/^static void genomeRangeTreeFileWriteHeaderDetailed(struct genomeRangeTreeFile *f, boolean zeroSig)$/;"	f	file:
genomeRangeTreeFileWriteToBed	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeFileWriteToBed(char *inBama, char *bedFile, boolean withId, boolean mergeAdjacent)$/;"	f
genomeRangeTreeFindEnclosing	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeFindEnclosing(struct genomeRangeTree *tree, char *chrom, int start, int end)$/;"	f
genomeRangeTreeFindOrAddRangeTree	lib/genomeRangeTree.c	/^struct rbTree *genomeRangeTreeFindOrAddRangeTree(struct genomeRangeTree *tree, char *chrom)$/;"	f
genomeRangeTreeFindRangeTree	lib/genomeRangeTree.c	/^struct rbTree *genomeRangeTreeFindRangeTree(struct genomeRangeTree *tree, char *chrom)$/;"	f
genomeRangeTreeFree	lib/genomeRangeTree.c	/^void genomeRangeTreeFree(struct genomeRangeTree **pTree)$/;"	f
genomeRangeTreeList	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeList(struct genomeRangeTree *tree, char *chrom)$/;"	f
genomeRangeTreeMaxOverlapping	lib/genomeRangeTree.c	/^struct range *genomeRangeTreeMaxOverlapping(struct genomeRangeTree *tree, char *chrom, int start, int end)$/;"	f
genomeRangeTreeNew	lib/genomeRangeTree.c	/^struct genomeRangeTree *genomeRangeTreeNew()$/;"	f
genomeRangeTreeNewSize	lib/genomeRangeTree.c	/^struct genomeRangeTree *genomeRangeTreeNewSize(int hashPowerOfTwoSize)$/;"	f
genomeRangeTreeOverlapSize	lib/genomeRangeTree.c	/^int genomeRangeTreeOverlapSize(struct genomeRangeTree *tree, char *chrom, int start, int end)$/;"	f
genomeRangeTreeOverlaps	lib/genomeRangeTree.c	/^boolean genomeRangeTreeOverlaps(struct genomeRangeTree *tree, char *chrom, int start, int end)$/;"	f
genomeRangeTreeRead	hg/lib/genomeRangeTreeFile.c	/^struct genomeRangeTree *genomeRangeTreeRead(char *fileName)$/;"	f
genomeRangeTreeSig	inc/sig.h	72;"	d
genomeRangeTreeSwapSig	inc/sig.h	75;"	d
genomeRangeTreeToString	lib/genomeRangeTree.c	/^struct dyString *genomeRangeTreeToString(struct genomeRangeTree *tree)$/;"	f
genomeRangeTreeWrite	hg/lib/genomeRangeTreeFile.c	/^void genomeRangeTreeWrite(struct genomeRangeTree *t, char *fileName)$/;"	f
genomeUrl	hg/inc/tRNAs.h	/^    char *genomeUrl;	\/* GtRNAdb genome summary URL *\/$/;"	m	struct:tRNAs
genomesFile	hg/inc/trackHub.h	/^    char *genomesFile;	\/* URL to genome.ra file. Not allocated here. *\/$/;"	m	struct:trackHub
genomicDups	hg/inc/genomicDups.h	/^struct genomicDups$/;"	s
genomicDupsCommaIn	hg/lib/genomicDups.c	/^struct genomicDups *genomicDupsCommaIn(char **pS, struct genomicDups *ret)$/;"	f
genomicDupsCommaOut	hg/inc/genomicDups.h	54;"	d
genomicDupsFree	hg/lib/genomicDups.c	/^void genomicDupsFree(struct genomicDups **pEl)$/;"	f
genomicDupsFreeList	hg/lib/genomicDups.c	/^void genomicDupsFreeList(struct genomicDups **pList)$/;"	f
genomicDupsLoad	hg/lib/genomicDups.c	/^struct genomicDups *genomicDupsLoad(char **row)$/;"	f
genomicDupsOutput	hg/lib/genomicDups.c	/^void genomicDupsOutput(struct genomicDups *el, FILE *f, char sep, char lastSep) $/;"	f
genomicDupsStaticLoad	hg/lib/genomicDups.c	/^void genomicDupsStaticLoad(char **row, struct genomicDups *ret)$/;"	f
genomicDupsTabOut	hg/inc/genomicDups.h	51;"	d
genomicFrameShift	hg/inc/txInfo.h	/^    unsigned char genomicFrameShift;	\/* True if genomic version has frame shift we cut out *\/$/;"	m	struct:txInfo
genomicStop	hg/inc/txInfo.h	/^    unsigned char genomicStop;	\/* True if genomic version has stop codon we cut out *\/$/;"	m	struct:txInfo
genomicSuperDups	hg/inc/genomicSuperDups.h	/^struct genomicSuperDups$/;"	s
genomicSuperDupsCommaIn	hg/lib/genomicSuperDups.c	/^struct genomicSuperDups *genomicSuperDupsCommaIn(char **pS, struct genomicSuperDups *ret)$/;"	f
genomicSuperDupsCommaOut	hg/inc/genomicSuperDups.h	78;"	d
genomicSuperDupsFree	hg/lib/genomicSuperDups.c	/^void genomicSuperDupsFree(struct genomicSuperDups **pEl)$/;"	f
genomicSuperDupsFreeList	hg/lib/genomicSuperDups.c	/^void genomicSuperDupsFreeList(struct genomicSuperDups **pList)$/;"	f
genomicSuperDupsLoad	hg/lib/genomicSuperDups.c	/^struct genomicSuperDups *genomicSuperDupsLoad(char **row)$/;"	f
genomicSuperDupsLoadAll	hg/lib/genomicSuperDups.c	/^struct genomicSuperDups *genomicSuperDupsLoadAll(char *fileName) $/;"	f
genomicSuperDupsLoadWhere	hg/lib/genomicSuperDups.c	/^struct genomicSuperDups *genomicSuperDupsLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
genomicSuperDupsOutput	hg/lib/genomicSuperDups.c	/^void genomicSuperDupsOutput(struct genomicSuperDups *el, FILE *f, char sep, char lastSep) $/;"	f
genomicSuperDupsStaticLoad	hg/lib/genomicSuperDups.c	/^void genomicSuperDupsStaticLoad(char **row, struct genomicSuperDups *ret)$/;"	f
genomicSuperDupsTabOut	hg/inc/genomicSuperDups.h	75;"	d
genotype	hg/inc/genotype.h	/^struct genotype$/;"	s
genotypeCommaIn	hg/lib/genotype.c	/^struct genotype *genotypeCommaIn(char **pS, struct genotype *ret)$/;"	f
genotypeCommaOut	hg/inc/genotype.h	188;"	d
genotypeCount	inc/vcf.h	/^    int genotypeCount;		\/\/ Number of optional genotype columns described in header$/;"	m	struct:vcfFile
genotypeFree	hg/lib/genotype.c	/^void genotypeFree(struct genotype **pEl)$/;"	f
genotypeFreeList	hg/lib/genotype.c	/^void genotypeFreeList(struct genotype **pList)$/;"	f
genotypeFreqs	hg/inc/genotypeFreqs.h	/^struct genotypeFreqs$/;"	s
genotypeFreqsCommaIn	hg/lib/genotypeFreqs.c	/^struct genotypeFreqs *genotypeFreqsCommaIn(char **pS, struct genotypeFreqs *ret)$/;"	f
genotypeFreqsCommaOut	hg/inc/genotypeFreqs.h	103;"	d
genotypeFreqsFree	hg/lib/genotypeFreqs.c	/^void genotypeFreqsFree(struct genotypeFreqs **pEl)$/;"	f
genotypeFreqsFreeList	hg/lib/genotypeFreqs.c	/^void genotypeFreqsFreeList(struct genotypeFreqs **pList)$/;"	f
genotypeFreqsLoad	hg/lib/genotypeFreqs.c	/^struct genotypeFreqs *genotypeFreqsLoad(char **row)$/;"	f
genotypeFreqsLoadAll	hg/lib/genotypeFreqs.c	/^struct genotypeFreqs *genotypeFreqsLoadAll(char *fileName) $/;"	f
genotypeFreqsLoadAllByChar	hg/lib/genotypeFreqs.c	/^struct genotypeFreqs *genotypeFreqsLoadAllByChar(char *fileName, char chopper) $/;"	f
genotypeFreqsLoadAllByTab	hg/inc/genotypeFreqs.h	56;"	d
genotypeFreqsLoadByQuery	hg/lib/genotypeFreqs.c	/^struct genotypeFreqs *genotypeFreqsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
genotypeFreqsOutput	hg/lib/genotypeFreqs.c	/^void genotypeFreqsOutput(struct genotypeFreqs *el, FILE *f, char sep, char lastSep) $/;"	f
genotypeFreqsSaveToDb	hg/lib/genotypeFreqs.c	/^void genotypeFreqsSaveToDb(struct sqlConnection *conn, struct genotypeFreqs *el, char *tableName, int updateSize)$/;"	f
genotypeFreqsSaveToDbEscaped	hg/lib/genotypeFreqs.c	/^void genotypeFreqsSaveToDbEscaped(struct sqlConnection *conn, struct genotypeFreqs *el, char *tableName, int updateSize)$/;"	f
genotypeFreqsStaticLoad	hg/lib/genotypeFreqs.c	/^void genotypeFreqsStaticLoad(char **row, struct genotypeFreqs *ret)$/;"	f
genotypeFreqsTabOut	hg/inc/genotypeFreqs.h	100;"	d
genotypeIds	inc/vcf.h	/^    char **genotypeIds;		\/\/ Array of optional genotype column names described in header$/;"	m	struct:vcfFile
genotypeLoad	hg/lib/genotype.c	/^struct genotype *genotypeLoad(char **row)$/;"	f
genotypeLoadAll	hg/lib/genotype.c	/^struct genotype *genotypeLoadAll(char *fileName) $/;"	f
genotypeLoadAllByChar	hg/lib/genotype.c	/^struct genotype *genotypeLoadAllByChar(char *fileName, char chopper) $/;"	f
genotypeLoadAllByTab	hg/inc/genotype.h	141;"	d
genotypeLoadByQuery	hg/lib/genotype.c	/^struct genotype *genotypeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
genotypeOutput	hg/lib/genotype.c	/^void genotypeOutput(struct genotype *el, FILE *f, char sep, char lastSep) $/;"	f
genotypeSaveToDb	hg/lib/genotype.c	/^void genotypeSaveToDb(struct sqlConnection *conn, struct genotype *el, char *tableName, int updateSize)$/;"	f
genotypeSaveToDbEscaped	hg/lib/genotype.c	/^void genotypeSaveToDbEscaped(struct sqlConnection *conn, struct genotype *el, char *tableName, int updateSize)$/;"	f
genotypeStaticLoad	hg/lib/genotype.c	/^void genotypeStaticLoad(char **row, struct genotype *ret)$/;"	f
genotypeTabOut	hg/inc/genotype.h	185;"	d
genotypeUnparsedStrings	inc/vcf.h	/^    char **genotypeUnparsedStrings;	\/\/ Temporary array of unparsed optional genotype columns$/;"	m	struct:vcfRecord
genotypes	inc/vcf.h	/^    struct vcfGenotype *genotypes;	\/\/ If built, array of parsed genotype components;$/;"	m	struct:vcfRecord	typeref:struct:vcfRecord::vcfGenotype
gentleFree	lib/common.c	/^void gentleFree(void *pt)$/;"	f
geoMirrorEnabled	hg/lib/geoMirror.c	/^boolean geoMirrorEnabled()$/;"	f
geoMirrorNode	hg/lib/geoMirror.c	/^char *geoMirrorNode()$/;"	f
getAliForRange	hg/lib/mafGene.c	/^static struct mafAli *getAliForRange(char *database, char *mafTable, $/;"	f	file:
getAlignmentsForSeqs	hg/lib/coordConv.c	/^void getAlignmentsForSeqs(struct coordConvRep *ccr, char *blatHost, char *port, char *nibDir)$/;"	f
getAndSetHubStatus	hg/lib/hubConnect.c	/^static void getAndSetHubStatus(char *database, struct cart *cart, char *url, $/;"	f	file:
getAutoSqlObject	inc/annoStreamer.h	/^    struct asObject *(*getAutoSqlObject)(struct annoStreamer *self);$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::getAutoSqlObject
getAxtFileName	hg/lib/axtLib.c	/^char *getAxtFileName(char *chrom, char *toDb, char *alignment, char *fromDb)$/;"	f
getBedScore	jkOwnLib/gfPcrLib.c	/^static int getBedScore(struct gfPcrOutput *out)$/;"	f	file:
getBeforeBlockMapping	lib/pslTransMap.c	/^static struct block getBeforeBlockMapping(unsigned mqStart, unsigned mqEnd,$/;"	f	file:
getBlockMapping	lib/pslTransMap.c	/^static struct block getBlockMapping(struct psl* inPsl, struct psl *mapPsl,$/;"	f	file:
getBotCheckString	hg/lib/botDelay.c	/^static char *getBotCheckString(char *ip)$/;"	f	file:
getChopper	hg/lib/chromGraphFactory.c	/^static Chopper getChopper(char *formatType)$/;"	f	file:
getChunkMB	lib/mime.c	/^static void getChunkMB(struct mimeBuf *b, char **address, int *size, boolean *hasZeros)$/;"	f	file:
getCodingSequence	hg/lib/gpFx.c	/^static char *getCodingSequence(struct genePred *pred, char *transcriptSequence)$/;"	f	file:
getColumns	inc/annoStreamer.h	/^    struct annoColumn *(*getColumns)(struct annoStreamer *self);$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::getColumns
getCompressSuffix	lib/textOut.c	/^static char *getCompressSuffix(char *compressType)$/;"	f	file:
getCompressor	lib/textOut.c	/^static char **getCompressor(char *compressType)$/;"	f	file:
getConfigFile	hg/lib/hgConfig.c	/^static void getConfigFile(char filename[PATH_LEN])$/;"	f	file:
getConservationTrackName	hg/lib/pal.c	/^static char * getConservationTrackName( struct sqlConnection *conn)$/;"	f	file:
getCookieId	hg/lib/cart.c	/^static int getCookieId(char *cookieName)$/;"	f	file:
getCookieUser	hg/lib/botDelay.c	/^static char *getCookieUser()$/;"	f	file:
getCurrentDir	lib/osunix.c	/^char *getCurrentDir()$/;"	f
getCurrentDir	lib/oswin9x.c	/^char *getCurrentDir()$/;"	f
getData	hg/inc/wiggle.h	/^    unsigned long long (*getData)(struct wiggleDataStream *wds, char *db,$/;"	m	struct:wiggleDataStream
getData	hg/lib/wigDataStream.c	/^static unsigned long long getData(struct wiggleDataStream *wds, char *db,$/;"	f	file:
getDataViaBed	hg/inc/wiggle.h	/^    unsigned long long (*getDataViaBed)(struct wiggleDataStream *wds,$/;"	m	struct:wiggleDataStream
getDataViaBed	hg/lib/wigDataStream.c	/^static unsigned long long getDataViaBed(struct wiggleDataStream *wds, char *db,$/;"	f	file:
getDbAndGenome	hg/lib/web.c	/^void getDbAndGenome(struct cart *cart, char **retDb, char **retGenome,$/;"	f
getDbForGenome	hg/lib/web.c	/^static char *getDbForGenome(char *genome, struct cart *cart)$/;"	f	file:
getDbGenomeClade	hg/lib/web.c	/^void getDbGenomeClade(struct cart *cart, char **retDb, char **retGenome,$/;"	f
getDbList	hg/lib/hubConnect.c	/^static char *getDbList(struct trackHub *tHub, int *pCount)$/;"	f	file:
getDecompressor	lib/linefile.c	/^static char **getDecompressor(char *fileName)$/;"	f	file:
getDirs	lib/wormdna.c	/^static void getDirs()$/;"	f	file:
getDomainList	hg/lib/hdb.c	/^struct slName *getDomainList(struct sqlConnection *conn, char *ucscGeneId,$/;"	f
getDot	inc/vGfx.h	/^    int (*getDot)(void *v, int x, int y);$/;"	m	struct:vGfx
getEcHtml	hg/lib/ec.c	/^void getEcHtml(char *ecNumber)$/;"	f
getEndEdgesOverlapping	hg/lib/ggGraph.c	/^void getEndEdgesOverlapping(struct geneGraph *gg, struct hash *mRnaAli, int hardStartIx, $/;"	f
getEvidenceCount	hg/lib/altGraphX.c	/^int getEvidenceCount(struct altGraphX *ag, int edge)$/;"	f
getExpColorType	hg/lib/microarray.c	/^enum expColorType getExpColorType(char *colorScheme)$/;"	f
getFileNameFromHdrSig	lib/linefile.c	/^char *getFileNameFromHdrSig(char *m)$/;"	f
getFilters	inc/annoStreamer.h	/^    struct annoFilter *(*getFilters)(struct annoStreamer *self);$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::getFilters
getFloatArray	hg/lib/annoStreamWig.c	/^static void getFloatArray(struct annoStreamWig *self, struct wiggle *wiggle,$/;"	f	file:
getFontPixelHeight	inc/vGfx.h	/^    int (*getFontPixelHeight)(void *v, void *font);$/;"	m	struct:vGfx
getFontStringWidth	inc/vGfx.h	/^    int (*getFontStringWidth)(void *v, void *font, char *string);$/;"	m	struct:vGfx
getFrame	hg/lib/genePred.c	/^static int getFrame(struct psl *psl, int start, int end,$/;"	f	file:
getGbProtCodeInfo	hg/lib/loweutils.c	/^struct minGeneInfo* getGbProtCodeInfo(struct sqlConnection *conn, char* dbName, char *geneName)$/;"	f
getGenbankGrepIndex	hg/lib/hgFind.c	/^static char *getGenbankGrepIndex(char *db, struct hgFindSpec *hfs, char *table,$/;"	f	file:
getGenomeClade	hg/lib/loweutils.c	/^void getGenomeClade(struct sqlConnection *conn, char *dbName, char *genome, char *clade)$/;"	f
getGroupBoundaries	lib/gff.c	/^static void getGroupBoundaries(struct gffGroup *group)$/;"	f	file:
getHint	inc/vGfx.h	/^    char * (*getHint)(void *v, char *hint);$/;"	m	struct:vGfx
getHitsFromServer	jkOwnLib/gfBlatLib.c	/^struct gfHit *getHitsFromServer(int conn, struct lm *lm)$/;"	f
getHost	lib/osunix.c	/^char *getHost()$/;"	f
getHubId	hg/lib/hubConnect.c	/^static unsigned getHubId(char *url, char **errorMessage)$/;"	f	file:
getHubStatusTableName	hg/lib/hubConnect.c	/^static char *getHubStatusTableName()$/;"	f	file:
getIntVals	lib/keys.c	/^static void getIntVals(struct kvt *kvt, struct exp *exp, int *retLeft, int *retRight)$/;"	f	file:
getLineMB	lib/mime.c	/^static char *getLineMB(struct mimeBuf *b)$/;"	f	file:
getMarkerRecognizers	hg/lib/chromGraphFactory.c	/^static struct markerTypeRecognizer *getMarkerRecognizers($/;"	f	file:
getMimeHeaderFieldVal	lib/mime.c	/^char *getMimeHeaderFieldVal(char *header, char *field)$/;"	f
getMimeHeaderMainVal	lib/mime.c	/^char *getMimeHeaderMainVal(char *header)$/;"	f
getNewLineByType	lib/mime.c	/^char *getNewLineByType()$/;"	f
getNextCigarOp	lib/psl.c	/^static boolean getNextCigarOp(char **ptr, char *op, int *size)$/;"	f	file:
getOptions	inc/annoFormatter.h	/^    struct annoFormatterOption *(*getOptions)(struct annoFormatter *self);$/;"	m	struct:annoFormatter	typeref:struct:annoFormatter::getOptions
getOurAck	lib/rudp.c	/^static boolean getOurAck(struct rudp *ru, struct timeval *startTv, struct sockaddr_in *sai)$/;"	f	file:
getOutFile	hg/lib/lsSnpPdbChimera.c	/^static void getOutFile(char *pdbId, char *other,$/;"	f	file:
getOverBlockMapping	lib/pslTransMap.c	/^static struct block getOverBlockMapping(unsigned mqStart, unsigned mqEnd,$/;"	f	file:
getOverlappingGene	hg/lib/genePred.c	/^struct genePred *getOverlappingGene(char *db, struct genePred **list, char *table, char *chrom, int cStart, int cEnd, char *name, int *retOverlap)$/;"	f
getPfamDomainList	hg/lib/hdb.c	/^struct slName *getPfamDomainList(struct sqlConnection *conn, char *ucscGeneId)$/;"	f
getPopCount	hg/lib/hapmapSnpsCombined.c	/^int getPopCount(struct hapmapSnpsCombined *thisItem)$/;"	f
getPostInput	lib/cheapcgi.c	/^static void getPostInput()$/;"	f	file:
getPreview	hg/lib/chromGraphFactory.c	/^static struct slName *getPreview(struct customPp *cpp, int count)$/;"	f	file:
getPrimaryType	hg/lib/hui.c	/^static char *getPrimaryType(char *primarySubtrack, struct trackDb *tdb)$/;"	f	file:
getPslFromTable	hg/lib/hgFind.c	/^static struct psl *getPslFromTable(struct sqlConnection *conn, char *db, char *table, char *acc)$/;"	f	file:
getQueryFormat	hg/lib/hgFindSpecCustom.c	/^static char *getQueryFormat(struct hgFindSpec *hfs)$/;"	f	file:
getQueryInput	lib/cheapcgi.c	/^static void getQueryInput()$/;"	f	file:
getQueryInputExt	lib/cheapcgi.c	/^static void getQueryInputExt(boolean abortOnErr)$/;"	f	file:
getRefAli	hg/lib/mafGene.c	/^static struct mafAli *getRefAli(char *database, char *chrom, int start, int end)$/;"	f	file:
getSamDir	lib/bamFile.c	/^static char *getSamDir()$/;"	f	file:
getScoreDefaultsFromTdb	hg/lib/hui.c	/^static boolean getScoreDefaultsFromTdb(struct trackDb *tdb, char *scoreName,char *defaults,char**min,char**max)$/;"	f	file:
getScoreFloatRangeFromCart	hg/lib/hui.c	/^static void getScoreFloatRangeFromCart(struct cart *cart, struct trackDb *tdb, boolean parentLevel,$/;"	f	file:
getScoreIntRangeFromCart	hg/lib/hui.c	/^static void getScoreIntRangeFromCart(struct cart *cart, struct trackDb *tdb, boolean parentLevel,$/;"	f	file:
getScoreLimitsFromTdb	hg/lib/hui.c	/^static boolean getScoreLimitsFromTdb(struct trackDb *tdb, char *scoreName,char *defaults,char**min,char**max)$/;"	f	file:
getSearchTrixFile	hg/lib/search.c	/^void getSearchTrixFile(char *database, char *buf, int len)$/;"	f
getSeqAndId	hg/lib/hdb.c	/^static char* getSeqAndId(struct sqlConnection *conn, char *acc, HGID *retId)$/;"	f	file:
getSequences	hg/lib/gpFx.c	/^static void getSequences(struct genePred *pred, char *transcriptSequence,$/;"	f	file:
getSessionId	hg/lib/cart.c	/^static int getSessionId()$/;"	f	file:
getSpeciesInfo	hg/lib/mafGene.c	/^static struct speciesInfo *getSpeciesInfo(struct exonInfo *giList, $/;"	f	file:
getSpecificChar	hg/lib/jsHelper.c	/^static void getSpecificChar(char c, char *str, int *posPtr)$/;"	f	file:
getSpliceEdgeType	hg/lib/altGraphX.c	/^enum ggEdgeType getSpliceEdgeType(struct altGraphX *ag, int edge)$/;"	f
getSrcDbWhere	hg/lib/ccdsInfo.c	/^static char *getSrcDbWhere(enum ccdsInfoSrcDb srcDb)$/;"	f	file:
getStack	lib/errCatch.c	/^static struct errCatch **getStack()$/;"	f	file:
getStartEdgesOverlapping	hg/lib/ggGraph.c	/^void getStartEdgesOverlapping(struct geneGraph *gg, struct hash *mRnaAli, int softStartIx, $/;"	f
getStrand	lib/blastParse.c	/^static int getStrand(struct blastFile *bf, char *strand)$/;"	f	file:
getString	hg/lib/jsHelper.c	/^static char *getString(char *str, int *posPtr)$/;"	f	file:
getSuperTrackInfo	hg/lib/trackDbCustom.c	/^static struct superTrackInfo *getSuperTrackInfo(struct trackDb *tdb)$/;"	f	file:
getTabFile	hg/lib/hgRelate.c	/^static void getTabFile(char *tmpDir, char *tableName, char path[PATH_LEN])$/;"	f	file:
getTableInfo	hg/lib/pslReader.c	/^static void getTableInfo(struct pslReader* pr)$/;"	f	file:
getTableSize	hg/lib/hdb.c	/^int getTableSize(char *db, char *table)$/;"	f
getTargetName	jkOwnLib/gfBlatLib.c	/^static void getTargetName(char *tSpec, boolean includeFile, char *targetName)$/;"	f	file:
getThreadVars	lib/errabort.c	/^static struct perThreadAbortVars *getThreadVars()$/;"	f	file:
getTrackProfileName	hg/lib/hdb.c	/^char *getTrackProfileName(struct trackDb *tdb)$/;"	f
getUiUrl	hg/lib/hgFind.c	/^static char *getUiUrl(struct cart *cart)$/;"	f	file:
getUpdateFieldIndex	hg/lib/jksql.c	/^static int getUpdateFieldIndex(struct sqlResult *sr)$/;"	f	file:
getUser	lib/osunix.c	/^char *getUser()$/;"	f
getWormGeneDna	lib/wormdna.c	/^boolean getWormGeneDna(char *name, DNA **retDna, boolean upcExons)$/;"	f
getWormGeneExonDna	lib/wormdna.c	/^boolean getWormGeneExonDna(char *name, DNA **retDna)$/;"	f
getXrefTerms	hg/lib/hgFind.c	/^static struct slPair *getXrefTerms(char *db, struct hgFindSpec *hfs, char *term)$/;"	f	file:
get_next_code	lib/gifdecomp.c	/^static WORD get_next_code()$/;"	f	file:
getcMB	lib/mime.c	/^static char getcMB(struct mimeBuf *b)$/;"	f	file:
gfAddLargeSeq	jkOwnLib/genoFind.c	/^static void gfAddLargeSeq(struct genoFind *gf, bioSeq *seq, bits32 offset)$/;"	f	file:
gfAddSeq	jkOwnLib/genoFind.c	/^static void gfAddSeq(struct genoFind *gf, bioSeq *seq, bits32 offset)$/;"	f	file:
gfAddTilesInNib	jkOwnLib/genoFind.c	/^static int gfAddTilesInNib(struct genoFind *gf, char *fileName, bits32 offset,$/;"	f	file:
gfAlignAaClumps	jkOwnLib/gfBlatLib.c	/^void gfAlignAaClumps(struct genoFind *gf,  struct gfClump *clumpList, $/;"	f
gfAlignSomeClumps	jkOwnLib/gfBlatLib.c	/^static void gfAlignSomeClumps(struct genoFind *gf,  struct gfClump *clumpList, $/;"	f	file:
gfAlignStrand	jkOwnLib/gfBlatLib.c	/^void gfAlignStrand(int *pConn, char *tSeqDir, struct dnaSeq *seq,$/;"	f
gfAlignTrans	jkOwnLib/gfBlatLib.c	/^void gfAlignTrans(int *pConn, char *tSeqDir, aaSeq *seq, int minMatch, $/;"	f
gfAlignTransTrans	jkOwnLib/gfBlatLib.c	/^void gfAlignTransTrans(int *pConn, char *tSeqDir, struct dnaSeq *qSeq, $/;"	f
gfAllocLargeLists	jkOwnLib/genoFind.c	/^static int gfAllocLargeLists(struct genoFind *gf)$/;"	f	file:
gfAllocLists	jkOwnLib/genoFind.c	/^static int gfAllocLists(struct genoFind *gf)$/;"	f	file:
gfCatchPipes	jkOwnLib/genoFind.c	/^void gfCatchPipes()$/;"	f
gfCheckTileSize	jkOwnLib/genoFind.c	/^void gfCheckTileSize(int tileSize, boolean isPep)$/;"	f
gfClientFileArray	jkOwnLib/gfClientLib.c	/^void gfClientFileArray(char *fileName, char ***retFiles, int *retFileCount)$/;"	f
gfClientSeqList	jkOwnLib/gfClientLib.c	/^bioSeq *gfClientSeqList(int fileCount, char *files[], $/;"	f
gfClientUnmask	jkOwnLib/gfClientLib.c	/^void gfClientUnmask(struct dnaSeq *seqList)$/;"	f
gfClump	inc/genoFind.h	/^struct gfClump$/;"	s
gfClumpCmpQueryCoverage	jkOwnLib/genoFind.c	/^static int gfClumpCmpQueryCoverage(const void *va, const void *vb)$/;"	f	file:
gfClumpComputeQueryCoverage	jkOwnLib/genoFind.c	/^static void gfClumpComputeQueryCoverage(struct gfClump *clumpList, $/;"	f	file:
gfClumpDump	jkOwnLib/genoFind.c	/^void gfClumpDump(struct genoFind *gf, struct gfClump *clump, FILE *f)$/;"	f
gfClumpFree	jkOwnLib/genoFind.c	/^void gfClumpFree(struct gfClump **pClump)$/;"	f
gfClumpFreeList	jkOwnLib/genoFind.c	/^void gfClumpFreeList(struct gfClump **pList)$/;"	f
gfClumpsToBundles	jkOwnLib/gfBlatLib.c	/^static struct ssBundle *gfClumpsToBundles(struct gfClump *clumpList, $/;"	f	file:
gfConnect	lib/gfNet.c	/^int gfConnect(char *hostName, char *portName)$/;"	f
gfConstants	inc/genoFind.h	/^enum gfConstants {$/;"	g
gfCountSeq	jkOwnLib/genoFind.c	/^static void gfCountSeq(struct genoFind *gf, bioSeq *seq)$/;"	f	file:
gfCountTilesInNib	jkOwnLib/genoFind.c	/^static int gfCountTilesInNib(struct genoFind *gf, int stepSize, char *fileName)$/;"	f	file:
gfCountTilesInTwoBit	jkOwnLib/genoFind.c	/^static void gfCountTilesInTwoBit(struct genoFind *gf, int stepSize,$/;"	f	file:
gfDefaultRepMatch	jkOwnLib/genoFind.c	/^int gfDefaultRepMatch(int tileSize, int stepSize, boolean protTiles)$/;"	f
gfDnaTile	jkOwnLib/genoFind.c	/^int gfDnaTile(DNA *dna, int n)$/;"	f
gfFastFindDnaHits	jkOwnLib/genoFind.c	/^static struct gfHit *gfFastFindDnaHits(struct genoFind *gf, struct dnaSeq *seq, $/;"	f	file:
gfFileCacheFree	jkOwnLib/gfBlatLib.c	/^void gfFileCacheFree(struct hash **pCache)$/;"	f
gfFileCacheFreeEl	jkOwnLib/gfBlatLib.c	/^static void gfFileCacheFreeEl(struct hashEl *el)$/;"	f	file:
gfFileCacheNew	jkOwnLib/gfBlatLib.c	/^struct hash *gfFileCacheNew()$/;"	f
gfFindAlignAaTrans	jkOwnLib/gfBlatLib.c	/^void gfFindAlignAaTrans(struct genoFind *gfs[3], aaSeq *qSeq, struct hash *t3Hash, $/;"	f
gfFindClumps	jkOwnLib/genoFind.c	/^struct gfClump *gfFindClumps(struct genoFind *gf, bioSeq *seq, struct lm *lm, int *retHitCount)$/;"	f
gfFindClumpsWithQmask	jkOwnLib/genoFind.c	/^struct gfClump *gfFindClumpsWithQmask(struct genoFind *gf, bioSeq *seq, $/;"	f
gfFindHitsInRegion	jkOwnLib/genoFind.c	/^struct gfHit *gfFindHitsInRegion(struct genoFind *gf, bioSeq *seq, $/;"	f
gfFindHitsWithQmask	jkOwnLib/genoFind.c	/^static struct gfHit *gfFindHitsWithQmask(struct genoFind *gf, bioSeq *seq,$/;"	f	file:
gfFindNamedSource	jkOwnLib/genoFind.c	/^struct gfSeqSource *gfFindNamedSource(struct genoFind *gf, char *name)$/;"	f
gfHit	inc/genoFind.h	/^struct gfHit$/;"	s
gfHitCmpDiagonal	jkOwnLib/genoFind.c	/^static int gfHitCmpDiagonal(const void *va, const void *vb)$/;"	f	file:
gfHitCmpQuery	jkOwnLib/genoFind.c	/^static int gfHitCmpQuery(const void *va, const void *vb)$/;"	f	file:
gfHitCmpTarget	jkOwnLib/genoFind.c	/^static int gfHitCmpTarget(const void *va, const void *vb)$/;"	f	file:
gfHitSort2	jkOwnLib/genoFind.c	/^static void gfHitSort2(struct gfHit **ptArray, int n)$/;"	f	file:
gfHitSortDiagonal	jkOwnLib/genoFind.c	/^void gfHitSortDiagonal(struct gfHit **pList)$/;"	f
gfIndexNibsAndTwoBits	jkOwnLib/genoFind.c	/^struct genoFind *gfIndexNibsAndTwoBits(int fileCount, char *fileNames[],$/;"	f
gfIndexSeq	jkOwnLib/genoFind.c	/^struct genoFind *gfIndexSeq(bioSeq *seqList,$/;"	f
gfIndexTransNibsAndTwoBits	jkOwnLib/genoFind.c	/^void gfIndexTransNibsAndTwoBits(struct genoFind *transGf[2][3], $/;"	f
gfLargeIndexSeq	jkOwnLib/genoFind.c	/^static struct genoFind *gfLargeIndexSeq(struct genoFind *gf, bioSeq *seqList,$/;"	f	file:
gfLongDnaInMem	jkOwnLib/gfBlatLib.c	/^void gfLongDnaInMem(struct dnaSeq *query, struct genoFind *gf, $/;"	f
gfLongTransTransInMem	jkOwnLib/gfBlatLib.c	/^void gfLongTransTransInMem(struct dnaSeq *query, struct genoFind *gfs[3], $/;"	f
gfMakeOoc	jkOwnLib/genoFind.c	/^void gfMakeOoc(char *outName, char *files[], int fileCount, $/;"	f
gfMaxGap	inc/genoFind.h	/^    gfMaxGap = 2,$/;"	e	enum:gfConstants
gfMaxTileUse	inc/genoFind.h	/^    gfMaxTileUse = 1024,$/;"	e	enum:gfConstants
gfMinMatch	inc/genoFind.h	/^    gfMinMatch = 2,$/;"	e	enum:gfConstants
gfNearEnough	jkOwnLib/genoFind.c	/^static int gfNearEnough = 300;$/;"	v	file:
gfNewEmpty	jkOwnLib/genoFind.c	/^static struct genoFind *gfNewEmpty(int minMatch, int maxGap, $/;"	f	file:
gfOutput	inc/genoFind.h	/^struct gfOutput$/;"	s
gfOutputAny	jkOwnLib/gfOut.c	/^struct gfOutput *gfOutputAny(char *format, $/;"	f
gfOutputAxt	jkOwnLib/gfOut.c	/^struct gfOutput *gfOutputAxt(int goodPpt, boolean qIsProt, $/;"	f
gfOutputAxtMem	jkOwnLib/gfOut.c	/^struct gfOutput *gfOutputAxtMem(int goodPpt, boolean qIsProt, $/;"	f
gfOutputBlast	jkOwnLib/gfOut.c	/^struct gfOutput *gfOutputBlast(int goodPpt, $/;"	f
gfOutputFree	jkOwnLib/gfOut.c	/^void gfOutputFree(struct gfOutput **pOut)$/;"	f
gfOutputHead	jkOwnLib/gfOut.c	/^void gfOutputHead(struct gfOutput *out, FILE *f)$/;"	f
gfOutputInit	jkOwnLib/gfOut.c	/^static struct gfOutput *gfOutputInit(int goodPpt, boolean qIsProt, boolean tIsProt)$/;"	f	file:
gfOutputMaf	jkOwnLib/gfOut.c	/^struct gfOutput *gfOutputMaf(int goodPpt, boolean qIsProt, $/;"	f
gfOutputPsl	jkOwnLib/gfOut.c	/^struct gfOutput *gfOutputPsl(int goodPpt, $/;"	f
gfOutputQuery	jkOwnLib/gfOut.c	/^void gfOutputQuery(struct gfOutput *out, FILE *f)$/;"	f
gfOutputSim4	jkOwnLib/gfOut.c	/^struct gfOutput *gfOutputSim4(int goodPpt, boolean qIsProt, boolean tIsProt, $/;"	f
gfPcrClumps	jkOwnLib/genoFind.c	/^struct gfClump *gfPcrClumps(struct genoFind *gf, char *fPrimer, int fPrimerSize, $/;"	f
gfPcrGetRanges	jkOwnLib/gfPcrLib.c	/^struct gfRange *gfPcrGetRanges(char *host, char *port, char *fPrimer, char *rPrimer,$/;"	f
gfPcrInput	inc/gfPcrLib.h	/^struct gfPcrInput$/;"	s
gfPcrInputFree	jkOwnLib/gfPcrLib.c	/^void gfPcrInputFree(struct gfPcrInput **pEl)$/;"	f
gfPcrInputFreeList	jkOwnLib/gfPcrLib.c	/^void gfPcrInputFreeList(struct gfPcrInput **pList)$/;"	f
gfPcrInputLoad	jkOwnLib/gfPcrLib.c	/^struct gfPcrInput *gfPcrInputLoad(char **row)$/;"	f
gfPcrInputLoadAll	jkOwnLib/gfPcrLib.c	/^struct gfPcrInput *gfPcrInputLoadAll(char *fileName) $/;"	f
gfPcrInputStaticLoad	jkOwnLib/gfPcrLib.c	/^void gfPcrInputStaticLoad(char **row, struct gfPcrInput *ret)$/;"	f
gfPcrLocal	jkOwnLib/gfPcrLib.c	/^void gfPcrLocal(char *pcrName, $/;"	f
gfPcrMakePrimer	jkOwnLib/gfPcrLib.c	/^char *gfPcrMakePrimer(char *s)$/;"	f
gfPcrOneViaNet	jkOwnLib/gfPcrLib.c	/^static void gfPcrOneViaNet($/;"	f	file:
gfPcrOutput	inc/gfPcrLib.h	/^struct gfPcrOutput$/;"	s
gfPcrOutputFree	jkOwnLib/gfPcrLib.c	/^void gfPcrOutputFree(struct gfPcrOutput **pOut)$/;"	f
gfPcrOutputFreeList	jkOwnLib/gfPcrLib.c	/^void gfPcrOutputFreeList(struct gfPcrOutput **pList)$/;"	f
gfPcrOutputFunction	jkOwnLib/gfPcrLib.c	/^static outFunction gfPcrOutputFunction(char *outType)$/;"	f	file:
gfPcrOutputWriteAll	jkOwnLib/gfPcrLib.c	/^void gfPcrOutputWriteAll(struct gfPcrOutput *outList, $/;"	f
gfPcrOutputWriteList	jkOwnLib/gfPcrLib.c	/^void gfPcrOutputWriteList(struct gfPcrOutput *outList, char *outType, $/;"	f
gfPcrOutputWriteOne	jkOwnLib/gfPcrLib.c	/^void gfPcrOutputWriteOne(struct gfPcrOutput *out, char *outType, $/;"	f
gfPcrViaNet	jkOwnLib/gfPcrLib.c	/^struct gfPcrOutput *gfPcrViaNet(char *host, char *port, char *seqDir, $/;"	f
gfPepMaxTileUse	inc/genoFind.h	/^    gfPepMaxTileUse = 30000,$/;"	e	enum:gfConstants
gfPepTile	jkOwnLib/genoFind.c	/^int gfPepTile(AA *pep, int n)$/;"	f
gfPipeHandler	jkOwnLib/genoFind.c	/^static void gfPipeHandler(int sigNum)$/;"	f	file:
gfPowerOf20	jkOwnLib/genoFind.c	/^int gfPowerOf20(int n)$/;"	f
gfQuerySeq	jkOwnLib/gfBlatLib.c	/^static struct gfRange *gfQuerySeq(int conn, struct dnaSeq *seq)$/;"	f	file:
gfQuerySeqTrans	jkOwnLib/gfBlatLib.c	/^static void gfQuerySeqTrans(int conn, aaSeq *seq, struct gfClump *clumps[2][3], $/;"	f	file:
gfQuerySeqTransTrans	jkOwnLib/gfBlatLib.c	/^static void gfQuerySeqTransTrans(int conn, struct dnaSeq *seq, $/;"	f	file:
gfRangeCmpTarget	jkOwnLib/gfBlatLib.c	/^int gfRangeCmpTarget(const void *va, const void *vb)$/;"	f
gfRangeFree	jkOwnLib/gfBlatLib.c	/^void gfRangeFree(struct gfRange **pEl)$/;"	f
gfRangeFreeList	jkOwnLib/gfBlatLib.c	/^void gfRangeFreeList(struct gfRange **pList)$/;"	f
gfRangeLoad	jkOwnLib/gfBlatLib.c	/^static struct gfRange *gfRangeLoad(char **row)$/;"	f	file:
gfRangesBundle	jkOwnLib/gfBlatLib.c	/^struct gfRange *gfRangesBundle(struct gfRange *exonList, int maxIntron)$/;"	f
gfRangesToFfItem	jkOwnLib/gfBlatLib.c	/^struct ssFfItem *gfRangesToFfItem(struct gfRange *rangeList, aaSeq *qSeq)$/;"	f
gfReadMulti	jkOwnLib/genoFind.c	/^int gfReadMulti(int sd, void *vBuf, size_t size)$/;"	f
gfSegmentedFindHits	jkOwnLib/genoFind.c	/^static struct gfHit *gfSegmentedFindHits(struct genoFind *gf, aaSeq *seq, $/;"	f	file:
gfSegmentedFindNearHits	jkOwnLib/genoFind.c	/^static struct gfHit *gfSegmentedFindNearHits(struct genoFind *gf, $/;"	f	file:
gfSeqSource	inc/genoFind.h	/^struct gfSeqSource$/;"	s
gfServerAt	inc/gfWebLib.h	/^struct gfServerAt$/;"	s
gfServerWarn	jkOwnLib/gfBlatLib.c	/^static void gfServerWarn(bioSeq *seq, char *warning)$/;"	f	file:
gfSignature	jkOwnLib/genoFind.c	/^char *gfSignature()$/;"	f
gfSmallIndexSeq	jkOwnLib/genoFind.c	/^static struct genoFind *gfSmallIndexSeq(struct genoFind *gf, bioSeq *seqList,$/;"	f	file:
gfStraightFindHits	jkOwnLib/genoFind.c	/^static struct gfHit *gfStraightFindHits(struct genoFind *gf, aaSeq *seq, $/;"	f	file:
gfStraightFindNearHits	jkOwnLib/genoFind.c	/^static struct gfHit *gfStraightFindNearHits(struct genoFind *gf, aaSeq *seq, $/;"	f	file:
gfText	lib/gemfont.c	/^void gfText(struct memGfx *screen, struct font_hdr *f, char *text, $/;"	f
gfTileSize	inc/genoFind.h	/^    gfTileSize = 11,$/;"	e	enum:gfConstants
gfTransFindClumps	jkOwnLib/genoFind.c	/^void gfTransFindClumps(struct genoFind *gfs[3], aaSeq *seq, struct gfClump *clumps[3], struct lm *lm, int *retHitCount)$/;"	f
gfTransTransFindBundles	jkOwnLib/gfBlatLib.c	/^static struct ssBundle *gfTransTransFindBundles(struct genoFind *gfs[3], struct dnaSeq *qSeq, $/;"	f	file:
gfTransTransFindClumps	jkOwnLib/genoFind.c	/^void gfTransTransFindClumps(struct genoFind *gfs[3], aaSeq *seqs[3], $/;"	f
gfType	inc/aliType.h	/^enum gfType$/;"	g
gfTypeFromName	lib/aliType.c	/^enum gfType gfTypeFromName(char *name)$/;"	f
gfTypeName	lib/aliType.c	/^char *gfTypeName(enum gfType type)$/;"	f
gfVersion	inc/genoFind.h	382;"	d
gfWebConfig	inc/gfWebLib.h	/^struct gfWebConfig$/;"	s
gfWebConfigRead	jkOwnLib/gfWebLib.c	/^struct gfWebConfig *gfWebConfigRead(char *fileName)$/;"	f
gfWebFindServer	jkOwnLib/gfWebLib.c	/^struct gfServerAt *gfWebFindServer(struct gfServerAt *serverList, char *varName)$/;"	f
gfZeroNonOverused	jkOwnLib/genoFind.c	/^static void gfZeroNonOverused(struct genoFind *gf)$/;"	f	file:
gfZeroOverused	jkOwnLib/genoFind.c	/^static void gfZeroOverused(struct genoFind *gf)$/;"	f	file:
gff	inc/oldGff.h	/^struct gff$/;"	s
gff3Ann	inc/gff3.h	/^struct gff3Ann$/;"	s
gff3AnnCount	lib/gff3.c	/^static int gff3AnnCount(struct gff3Ann *g3a)$/;"	f	file:
gff3AnnErr	lib/gff3.c	/^static void gff3AnnErr(struct gff3Ann *g3a, char *format, ...)$/;"	f	file:
gff3AnnFindAttr	lib/gff3.c	/^struct gff3Attr *gff3AnnFindAttr(struct gff3Ann *g3a, char *tag)$/;"	f
gff3AnnRef	inc/gff3.h	/^struct gff3AnnRef$/;"	s
gff3AnnRefAlloc	lib/gff3.c	/^static struct gff3AnnRef *gff3AnnRefAlloc(struct gff3Ann *g3a)$/;"	f	file:
gff3AnnRefLocCmp	lib/gff3.c	/^int gff3AnnRefLocCmp(const void *va, const void *vb)$/;"	f
gff3AnnRefNew	inc/gff3.h	/^INLINE struct gff3AnnRef *gff3AnnRefNew(struct gff3Ann *g3a)$/;"	f
gff3Attr	inc/gff3.h	/^struct gff3Attr$/;"	s
gff3AttrAlias	lib/gff3.c	/^char *gff3AttrAlias = "Alias";$/;"	v
gff3AttrDbxref	lib/gff3.c	/^char *gff3AttrDbxref = "Dbxref";$/;"	v
gff3AttrDerivesFrom	lib/gff3.c	/^char *gff3AttrDerivesFrom = "Derives_from";$/;"	v
gff3AttrGap	lib/gff3.c	/^char *gff3AttrGap = "Gap";$/;"	v
gff3AttrID	lib/gff3.c	/^char *gff3AttrID = "ID";$/;"	v
gff3AttrName	lib/gff3.c	/^char *gff3AttrName = "Name";$/;"	v
gff3AttrNote	lib/gff3.c	/^char *gff3AttrNote = "Note";$/;"	v
gff3AttrOntologyTerm	lib/gff3.c	/^char *gff3AttrOntologyTerm = "Ontology_term";$/;"	v
gff3AttrParent	lib/gff3.c	/^char *gff3AttrParent = "Parent";$/;"	v
gff3AttrTarget	lib/gff3.c	/^char *gff3AttrTarget = "Target";$/;"	v
gff3FeatCDS	lib/gff3.c	/^char *gff3FeatCDS = "CDS";$/;"	v
gff3FeatExon	lib/gff3.c	/^char *gff3FeatExon = "exon";$/;"	v
gff3FeatFivePrimeUTR	lib/gff3.c	/^char *gff3FeatFivePrimeUTR = "five_prime_UTR";$/;"	v
gff3FeatGene	lib/gff3.c	/^char *gff3FeatGene = "gene";$/;"	v
gff3FeatMRna	lib/gff3.c	/^char *gff3FeatMRna = "mRNA";$/;"	v
gff3FeatStartCodon	lib/gff3.c	/^char *gff3FeatStartCodon = "start_codon";$/;"	v
gff3FeatStopCodon	lib/gff3.c	/^char *gff3FeatStopCodon = "stop_codon";$/;"	v
gff3FeatThreePrimeUTR	lib/gff3.c	/^char *gff3FeatThreePrimeUTR = "three_prime_UTR";$/;"	v
gff3File	inc/gff3.h	/^struct gff3File$/;"	s
gff3FileAlloc	lib/gff3.c	/^static void *gff3FileAlloc(struct gff3File *g3f, size_t size)$/;"	f	file:
gff3FileCloneStr	lib/gff3.c	/^static char *gff3FileCloneStr(struct gff3File *g3f, char *str)$/;"	f	file:
gff3FileErr	lib/gff3.c	/^static void gff3FileErr(struct gff3File *g3f, char *format, ...)$/;"	f	file:
gff3FileFindAnn	lib/gff3.c	/^struct gff3Ann *gff3FileFindAnn(struct gff3File *g3f, char *id)$/;"	f
gff3FileFree	lib/gff3.c	/^void gff3FileFree(struct gff3File **g3fPtr)$/;"	f
gff3FileNew	lib/gff3.c	/^static struct gff3File *gff3FileNew()$/;"	f	file:
gff3FileOpen	lib/gff3.c	/^struct gff3File *gff3FileOpen(char *fileName, int maxErr, FILE *errFh)$/;"	f
gff3FilePooledStr	lib/gff3.c	/^static char *gff3FilePooledStr(struct gff3File *g3f, char *str)$/;"	f	file:
gff3FileSlNameNew	lib/gff3.c	/^static struct slName *gff3FileSlNameNew(struct gff3File *g3f, char *name)$/;"	f	file:
gff3FileStopDueToErrors	lib/gff3.c	/^static bool gff3FileStopDueToErrors(struct gff3File *g3f)$/;"	f	file:
gff3FileStrToFloat	lib/gff3.c	/^static float gff3FileStrToFloat(struct gff3File *g3f, char *str)$/;"	f	file:
gff3FileStrToInt	lib/gff3.c	/^static int gff3FileStrToInt(struct gff3File *g3f, char *str)$/;"	f	file:
gff3FileWrite	lib/gff3.c	/^void gff3FileWrite(struct gff3File *g3f, char *fileName)$/;"	f
gff3PhaseToFrame	inc/gff3.h	/^INLINE int gff3PhaseToFrame(int phase)$/;"	f
gff3SeqRegion	inc/gff3.h	/^struct gff3SeqRegion$/;"	s
gff3_h	inc/gff3.h	7;"	d
gffClose	lib/oldGff.c	/^void gffClose(struct gff *gff)$/;"	f
gffCommaOut	inc/gff.h	136;"	d
gffDupeGene	lib/oldGff.c	/^struct gffGene *gffDupeGene(struct gff *gff, struct gffGene *oldGene)$/;"	f
gffDupeGeneAndSurrounds	lib/oldGff.c	/^struct gffGene *gffDupeGeneAndSurrounds(struct gff *gff, struct gffGene *oldGene,$/;"	f
gffFactory	hg/lib/customFactory.c	/^static struct customFactory gffFactory =$/;"	v	typeref:struct:customFactory	file:
gffFeature	inc/ens.h	/^    char *gffFeature;		\/* Feature field from GFF. *\/$/;"	m	struct:ensAnalysis
gffFeature	inc/gff.h	/^struct gffFeature$/;"	s
gffFile	inc/gff.h	/^struct gffFile$/;"	s
gffFileAdd	lib/gff.c	/^void gffFileAdd(struct gffFile *gff, char *fileName, int baseOffset)$/;"	f
gffFileAddRow	lib/gff.c	/^void gffFileAddRow(struct gffFile *gff, int baseOffset, char *words[], int wordCount, $/;"	f
gffFileFree	lib/gff.c	/^void gffFileFree(struct gffFile **pGff)$/;"	f
gffFileGetStr	lib/gff.c	/^static char *gffFileGetStr(struct gffFile *gff, char *str)$/;"	f	file:
gffFileNew	lib/gff.c	/^struct gffFile *gffFileNew(char *fileName)$/;"	f
gffFindGene	lib/oldGff.c	/^struct gffGene *gffFindGene(struct gff *gff, char *geneName)$/;"	f
gffFindGeneIgnoreCase	lib/oldGff.c	/^struct gffGene *gffFindGeneIgnoreCase(struct gff *gff, char *geneName)$/;"	f
gffFreeGene	lib/oldGff.c	/^void gffFreeGene(struct gffGene **pGene)$/;"	f
gffGene	inc/oldGff.h	/^struct gffGene$/;"	s
gffGeneId	inc/gff.h	/^struct gffGeneId$/;"	s
gffGeneWithOwnDna	lib/oldGff.c	/^struct gffGene *gffGeneWithOwnDna(struct gff *gff, char *geneName)$/;"	f
gffGroup	inc/gff.h	/^struct gffGroup$/;"	s
gffGroupAverageScore	hg/lib/customFactory.c	/^static double gffGroupAverageScore(struct gffGroup *group, double defaultScore)$/;"	f	file:
gffGroupFree	lib/gff.c	/^void gffGroupFree(struct gffGroup **pGroup)$/;"	f
gffGroupFreeList	lib/gff.c	/^void gffGroupFreeList(struct gffGroup **pList)$/;"	f
gffGroupLines	lib/gff.c	/^void gffGroupLines(struct gffFile *gff)$/;"	f
gffHasGtfGroup	lib/gff.c	/^boolean gffHasGtfGroup(char *line)$/;"	f
gffHelper	hg/inc/customTrack.h	/^    struct gffFile *gffHelper;	\/* Used while processing GFF files. *\/$/;"	m	struct:customTrack	typeref:struct:customTrack::gffFile
gffHelperFinish	hg/lib/customFactory.c	/^static struct bed *gffHelperFinish(struct gffFile *gff, struct hash *chromHash)$/;"	f	file:
gffLine	inc/gff.h	/^struct gffLine$/;"	s
gffLineCmp	lib/gff.c	/^int gffLineCmp(const void *va, const void *vb)$/;"	f
gffLoader	hg/lib/customFactory.c	/^static struct customTrack *gffLoader(struct customFactory *fac,$/;"	f	file:
gffNeedMem	lib/oldGff.c	/^static void *gffNeedMem(struct gff *gff, int size)$/;"	f	file:
gffNeedNum	hg/lib/liftOver.c	/^static int gffNeedNum(struct lineFile *lf, char *s)$/;"	f	file:
gffNextDnaLine	lib/oldGff.c	/^static boolean gffNextDnaLine(struct gff *gff)$/;"	f	file:
gffNumCols	lib/gff3.c	/^static const int gffNumCols = 9;$/;"	v	file:
gffOpen	lib/oldGff.c	/^boolean gffOpen(struct gff *gff, char *fileName)$/;"	f
gffOpenAndRead	lib/oldGff.c	/^boolean gffOpenAndRead(struct gff *gff, char *fileName)$/;"	f
gffOutput	lib/gff.c	/^void gffOutput(struct gffLine *el, FILE *f, char sep, char lastSep) $/;"	f
gffPrintInfo	lib/oldGff.c	/^void gffPrintInfo(struct gff *gff, FILE *out)$/;"	f
gffRead	lib/gff.c	/^struct gffFile *gffRead(char *fileName)$/;"	f
gffReadDna	lib/oldGff.c	/^boolean gffReadDna(struct gff *gff)$/;"	f
gffReadDnaSeq	lib/oldGff.c	/^struct dnaSeq *gffReadDnaSeq(char *fileName)$/;"	f
gffReadGenes	lib/oldGff.c	/^boolean gffReadGenes(struct gff *gff)$/;"	f
gffRecognizer	hg/lib/customFactory.c	/^static boolean gffRecognizer(struct customFactory *fac,$/;"	f	file:
gffSegLine	lib/oldGff.c	/^struct gffSegLine$/;"	s	file:
gffSegLineScan	lib/oldGff.c	/^static int gffSegLineScan(struct gff* gff, struct gffSegLine *seg)$/;"	f	file:
gffSegment	inc/oldGff.h	/^struct gffSegment$/;"	s
gffSegmentInsertSort	lib/oldGff.c	/^static void gffSegmentInsertSort(struct gffSegment **plist, $/;"	f	file:
gffSeqName	inc/gff.h	/^struct gffSeqName$/;"	s
gffSource	inc/ens.h	/^    char *gffSource;		\/* Source field from GFF. *\/$/;"	m	struct:ensAnalysis
gffSource	inc/gff.h	/^struct gffSource$/;"	s
gffSyntaxError	lib/gff.c	/^static void gffSyntaxError(char *fileName, int line, char *msg)$/;"	f	file:
gffTabOut	inc/gff.h	133;"	d
gffTnName	lib/gff.c	/^static char *gffTnName(char *seqName, char *groupName)$/;"	f	file:
gfiExpandAndLoadCached	jkOwnLib/gfInternal.c	/^struct dnaSeq *gfiExpandAndLoadCached(struct gfRange *range, $/;"	f
gfiExpandRange	jkOwnLib/gfInternal.c	/^void gfiExpandRange(struct gfRange *range, int qSize, int tSize, $/;"	f
gfiGetSeqName	jkOwnLib/gfInternal.c	/^void gfiGetSeqName(char *spec, char *name, char *file)$/;"	f
gftDna	inc/aliType.h	/^    gftDna = 0,		\/* DNA (genomic) *\/$/;"	e	enum:gfType
gftDnaX	inc/aliType.h	/^    gftDnaX = 3,		\/* Genomic DNA translated to protein *\/$/;"	e	enum:gfType
gftProt	inc/aliType.h	/^    gftProt = 2,         \/* Protein. *\/$/;"	e	enum:gfType
gftRna	inc/aliType.h	/^    gftRna = 1,		\/* RNA *\/$/;"	e	enum:gfType
gftRnaX	inc/aliType.h	/^    gftRnaX = 4,         \/* RNA translated to protein *\/$/;"	e	enum:gfType
gfxPoint	inc/gfxPoly.h	/^struct gfxPoint$/;"	s
gfxPoly	inc/gfxPoly.h	/^struct gfxPoly$/;"	s
gfxPolyAddPoint	lib/gfxPoly.c	/^void gfxPolyAddPoint(struct gfxPoly *poly, int x, int y)$/;"	f
gfxPolyFree	lib/gfxPoly.c	/^void gfxPolyFree(struct gfxPoly **pPoly)$/;"	f
gfxPolyNew	lib/gfxPoly.c	/^struct gfxPoly *gfxPolyNew()$/;"	f
gfxSlope	lib/pscmGfx.c	/^double gfxSlope(struct gfxPoint *q, struct gfxPoint *p)$/;"	f
ggAliInfo	hg/inc/geneGraph.h	/^struct ggAliInfo$/;"	s
ggAliInfoOverlap	hg/lib/ggGraph.c	/^boolean ggAliInfoOverlap(struct ggVertex *v, struct ggAliInfo *ai1, struct ggAliInfo *ai2, $/;"	f
ggClassifyEdge	hg/lib/geneGraph.c	/^enum ggEdgeType ggClassifyEdge(struct geneGraph *gg, int v1, int v2)$/;"	f
ggClusterMrna	hg/lib/ggCluster.c	/^struct ggMrnaCluster *ggClusterMrna(struct ggMrnaInput *ci)$/;"	f
ggCountAllEvidence	hg/lib/ggGraph.c	/^int ggCountAllEvidence(struct geneGraph *gg)$/;"	f
ggCountEdges	hg/lib/ggGraph.c	/^int ggCountEdges(struct geneGraph *gg)$/;"	f
ggCreateEdge	hg/lib/geneGraph.c	/^struct ggEdge *ggCreateEdge(int v1, int v2, int type)$/;"	f
ggEdge	hg/inc/geneGraph.h	/^struct ggEdge$/;"	s
ggEdgeType	hg/inc/ggTypes.h	/^enum ggEdgeType$/;"	g
ggEdgeTypeAsString	hg/lib/ggTypes.c	/^char *ggEdgeTypeAsString(enum ggVertexType type)$/;"	f
ggEdgeTypeFromString	hg/lib/ggTypes.c	/^enum ggVertexType ggEdgeTypeFromString(char *s)$/;"	f
ggEvAddHeadWrapper	hg/lib/ggGraph.c	/^void ggEvAddHeadWrapper(struct ggEvidence **list, struct ggEvidence **el)$/;"	f
ggEvidence	hg/inc/geneGraph.h	/^struct ggEvidence$/;"	s
ggEvidenceClone	hg/lib/ggGraph.c	/^struct ggEvidence * ggEvidenceClone(struct ggEvidence *geList)$/;"	f
ggEvidenceDebug	hg/lib/geneGraph.c	/^void ggEvidenceDebug(struct geneGraph *gg)$/;"	f
ggEvidenceFree	hg/lib/geneGraph.c	/^void ggEvidenceFree(struct ggEvidence **pEl)$/;"	f
ggEvidenceFreeList	hg/lib/geneGraph.c	/^void ggEvidenceFreeList(struct ggEvidence **pList)$/;"	f
ggEvidenceIx	hg/lib/ggGraph.c	/^static int ggEvidenceIx(struct ggEvidence *hayStack, struct ggEvidence *needle)$/;"	f	file:
ggExon	hg/inc/ggTypes.h	/^    ggExon,      \/* Exon, not necessarily coding *\/$/;"	e	enum:ggEdgeType
ggFillInTissuesAndLibraries	hg/lib/geneGraph.c	/^void ggFillInTissuesAndLibraries(struct geneGraph *gg, struct hash *tissLibHash,$/;"	f
ggFindCassetteExons	hg/lib/geneGraph.c	/^struct ggEdge *ggFindCassetteExons(struct geneGraph *gg)$/;"	f
ggFreeMrnaClusterList	hg/lib/ggCluster.c	/^void ggFreeMrnaClusterList(struct ggMrnaCluster **pMcList)$/;"	f
ggFromAltGraph	hg/lib/ggDbIo.c	/^struct geneGraph *ggFromAltGraph(struct altGraph *ag)$/;"	f
ggFromRow	hg/lib/ggDbIo.c	/^struct geneGraph *ggFromRow(char **row)$/;"	f
ggGraphCluster	hg/lib/ggGraph.c	/^struct geneGraph *ggGraphCluster(char *genomeDb, struct ggMrnaCluster *mc, struct ggMrnaInput *ci)$/;"	f
ggGraphConsensusCluster	hg/lib/ggGraph.c	/^struct geneGraph *ggGraphConsensusCluster(char *genomeDb, struct ggMrnaCluster *mc, struct ggMrnaInput *ci, $/;"	f
ggHardEnd	hg/inc/ggTypes.h	/^    ggHardEnd,    \/* 3 End of a middle exon, position known. *\/$/;"	e	enum:ggVertexType
ggHardStart	hg/inc/ggTypes.h	/^    ggHardStart,  \/* 1 Start of a middle exon, position known. *\/      $/;"	e	enum:ggVertexType
ggIntron	hg/inc/ggTypes.h	/^    ggIntron,    \/* Intron, spliced out *\/$/;"	e	enum:ggEdgeType
ggIsCassetteExonEdge	hg/lib/geneGraph.c	/^boolean ggIsCassetteExonEdge(struct geneGraph *gg, int vertex1, int vertex2)$/;"	f
ggMrnaAli	hg/inc/ggMrnaAli.h	/^struct ggMrnaAli$/;"	s
ggMrnaAliBed12Out	hg/lib/ggMrnaAli.c	/^void ggMrnaAliBed12Out(struct ggMrnaAli *ma, FILE *f)$/;"	f
ggMrnaAliBedOut	hg/lib/ggMrnaAli.c	/^void ggMrnaAliBedOut(struct ggMrnaAli *ma, FILE *f)$/;"	f
ggMrnaAliCommaIn	hg/lib/ggMrnaAli.c	/^struct ggMrnaAli *ggMrnaAliCommaIn(char **pS, struct ggMrnaAli *ret)$/;"	f
ggMrnaAliCommaOut	hg/inc/ggMrnaAli.h	159;"	d
ggMrnaAliFree	hg/lib/ggMrnaAli.c	/^void ggMrnaAliFree(struct ggMrnaAli **pEl)$/;"	f
ggMrnaAliFreeList	hg/lib/ggMrnaAli.c	/^void ggMrnaAliFreeList(struct ggMrnaAli **pList)$/;"	f
ggMrnaAliLoad	hg/lib/ggMrnaAli.c	/^struct ggMrnaAli *ggMrnaAliLoad(char **row)$/;"	f
ggMrnaAliLoadAll	hg/lib/ggMrnaAli.c	/^struct ggMrnaAli *ggMrnaAliLoadAll(char *fileName) $/;"	f
ggMrnaAliLoadByQuery	hg/lib/ggMrnaAli.c	/^struct ggMrnaAli *ggMrnaAliLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
ggMrnaAliMergeBlocks	hg/lib/ggMrnaAli.c	/^boolean ggMrnaAliMergeBlocks(struct ggMrnaAli *ma, int maxGap)$/;"	f
ggMrnaAliOutput	hg/lib/ggMrnaAli.c	/^void ggMrnaAliOutput(struct ggMrnaAli *el, FILE *f, char sep, char lastSep) $/;"	f
ggMrnaAliSaveToDb	hg/lib/ggMrnaAli.c	/^void ggMrnaAliSaveToDb(struct sqlConnection *conn, struct ggMrnaAli *el, char *tableName, int updateSize)$/;"	f
ggMrnaAliSaveToDbEscaped	hg/lib/ggMrnaAli.c	/^void ggMrnaAliSaveToDbEscaped(struct sqlConnection *conn, struct ggMrnaAli *el, char *tableName, int updateSize)$/;"	f
ggMrnaAliTabOut	hg/inc/ggMrnaAli.h	156;"	d
ggMrnaBlock	hg/inc/ggMrnaAli.h	/^struct ggMrnaBlock$/;"	s
ggMrnaBlockCommaIn	hg/lib/ggMrnaAli.c	/^struct ggMrnaBlock *ggMrnaBlockCommaIn(char **pS, struct ggMrnaBlock *ret)$/;"	f
ggMrnaBlockCommaOut	hg/inc/ggMrnaAli.h	85;"	d
ggMrnaBlockFree	hg/lib/ggMrnaAli.c	/^void ggMrnaBlockFree(struct ggMrnaBlock **pEl)$/;"	f
ggMrnaBlockFreeList	hg/lib/ggMrnaAli.c	/^void ggMrnaBlockFreeList(struct ggMrnaBlock **pList)$/;"	f
ggMrnaBlockLoad	hg/lib/ggMrnaAli.c	/^struct ggMrnaBlock *ggMrnaBlockLoad(char **row)$/;"	f
ggMrnaBlockLoadAll	hg/lib/ggMrnaAli.c	/^struct ggMrnaBlock *ggMrnaBlockLoadAll(char *fileName) $/;"	f
ggMrnaBlockLoadByQuery	hg/lib/ggMrnaAli.c	/^struct ggMrnaBlock *ggMrnaBlockLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
ggMrnaBlockOutput	hg/lib/ggMrnaAli.c	/^void ggMrnaBlockOutput(struct ggMrnaBlock *el, FILE *f, char sep, char lastSep) $/;"	f
ggMrnaBlockSaveToDb	hg/lib/ggMrnaAli.c	/^void ggMrnaBlockSaveToDb(struct sqlConnection *conn, struct ggMrnaBlock *el, char *tableName, int updateSize)$/;"	f
ggMrnaBlockSaveToDbEscaped	hg/lib/ggMrnaAli.c	/^void ggMrnaBlockSaveToDbEscaped(struct sqlConnection *conn, struct ggMrnaBlock *el, char *tableName, int updateSize)$/;"	f
ggMrnaBlockStaticLoad	hg/lib/ggMrnaAli.c	/^void ggMrnaBlockStaticLoad(char **row, struct ggMrnaBlock *ret)$/;"	f
ggMrnaBlockTabOut	hg/inc/ggMrnaAli.h	82;"	d
ggMrnaCluster	hg/inc/geneGraph.h	/^struct ggMrnaCluster$/;"	s
ggMrnaClusterMerge	hg/lib/ggCluster.c	/^void ggMrnaClusterMerge(struct ggMrnaCluster *aMc, struct ggMrnaCluster *bMc)$/;"	f
ggMrnaClusterOfOne	hg/lib/ggCluster.c	/^struct ggMrnaCluster *ggMrnaClusterOfOne(struct ggMrnaAli *ma, struct dnaSeq *genoSeq)$/;"	f
ggMrnaInput	hg/inc/ggMrnaAli.h	/^struct ggMrnaInput$/;"	s
ggMrnaInputFromAlignments	hg/lib/ggMrnaAli.c	/^struct ggMrnaInput *ggMrnaInputFromAlignments(struct ggMrnaAli *maList, struct dnaSeq *genoSeq)$/;"	f
ggMrnaSoftClusterOfOne	hg/lib/ggCluster.c	/^struct ggMrnaCluster *ggMrnaSoftClusterOfOne(struct ggMrnaAli *ma, $/;"	f
ggMrnaSoftFilteredClusterOfOne	hg/lib/ggCluster.c	/^struct ggMrnaCluster *ggMrnaSoftFilteredClusterOfOne(struct ggMrnaAli *ma, $/;"	f
ggOutputDebug	hg/lib/ggGraph.c	/^void ggOutputDebug(struct geneGraph *gg, int offset)$/;"	f
ggPrintHeader	hg/lib/geneGraph.c	/^void ggPrintHeader(int count)$/;"	f
ggPrintStart	hg/lib/geneGraph.c	/^void ggPrintStart(int count)$/;"	f
ggRangeEnd	hg/inc/ggTypes.h	/^    ggRangeEnd,   \/* 5 An end that could happen anywhere in a range. *\/ $/;"	e	enum:ggVertexType
ggRangeStart	hg/inc/ggTypes.h	/^    ggRangeStart  \/* 6 An start that could happen anywhere in a range. *\/$/;"	e	enum:ggVertexType
ggSJ	hg/inc/ggTypes.h	/^    ggSJ,        \/* Splice Junction *\/$/;"	e	enum:ggEdgeType
ggSoftEnd	hg/inc/ggTypes.h	/^    ggSoftEnd,    \/* 2 Last vertex - exact position unknown. *\/$/;"	e	enum:ggVertexType
ggSoftStart	hg/inc/ggTypes.h	/^    ggSoftStart,  \/* 0 First vertex - exact position unknown. *\/$/;"	e	enum:ggVertexType
ggTabOut	hg/lib/ggDbIo.c	/^void ggTabOut(struct geneGraph *gg, FILE *f)$/;"	f
ggToAltGraph	hg/lib/geneGraph.c	/^struct altGraph *ggToAltGraph(struct geneGraph *gg)$/;"	f
ggToAltGraphX	hg/lib/geneGraph.c	/^struct altGraphX *ggToAltGraphX(struct geneGraph *gg)$/;"	f
ggUnused	hg/inc/ggTypes.h	/^    ggUnused,     \/* 4 Vertex no longer part of graph. *\/$/;"	e	enum:ggVertexType
ggVertex	hg/inc/geneGraph.h	/^struct ggVertex$/;"	s
ggVertexType	hg/inc/ggTypes.h	/^enum ggVertexType$/;"	g
ggVertexTypeAsString	hg/lib/ggTypes.c	/^char *ggVertexTypeAsString(enum ggVertexType type)$/;"	f
ggVertexTypeFromString	hg/lib/ggTypes.c	/^enum ggVertexType ggVertexTypeFromString(char *s)$/;"	f
gi	hg/inc/minGeneInfo.h	/^    char *gi;	\/* gene genbank id *\/$/;"	m	struct:minGeneInfo
gi	hg/inc/sage.h	/^    char gi[65];	\/* gi field in unigene descriptions. *\/$/;"	m	struct:sage
giId	hg/inc/gbProtAnn.h	/^    unsigned giId;	\/* GenBank db_xref number *\/$/;"	m	struct:gbProtAnn
giString	hg/inc/softberryHom.h	/^    char *giString;	\/* String with Genbank gi and accession *\/$/;"	m	struct:softberryHom
gieStain	hg/inc/cytoBand.h	/^    char *gieStain;	\/* Giesma stain results *\/$/;"	m	struct:cytoBand
gif	lib/gifread.c	/^static struct gif_header gif;$/;"	v	typeref:struct:gif_header	file:
gifLabelMaxWidth	lib/gifLabel.c	/^int gifLabelMaxWidth(char **labels, int labelCount)$/;"	f
gifLabelVerticalText	lib/gifLabel.c	/^void gifLabelVerticalText(char *fileName, char **labels, int labelCount, $/;"	f
gifTest	lib/gifLabel.c	/^void gifTest()$/;"	f
gif_byte_buff	lib/gifcomp.c	/^static UBYTE gif_byte_buff[256+3];               \/* Current block *\/$/;"	v	file:
gif_byte_buff	lib/gifdecomp.c	/^static UBYTE gif_byte_buff[256+3];               \/* Current block *\/$/;"	v	file:
gif_cmap	lib/gifread.c	/^static UBYTE gif_cmap[256*3];$/;"	v	file:
gif_compress_data	lib/gifcomp.c	/^short gif_compress_data(int min_code_size, unsigned char *pt, long size, FILE *out)$/;"	f
gif_decoder	lib/gifdecomp.c	/^int gif_decoder(int linewidth)$/;"	f
gif_file	lib/gifcomp.c	/^static FILE *gif_file;$/;"	v	file:
gif_file	lib/gifread.c	/^static FILE *gif_file;$/;"	v	file:
gif_gce	lib/gifwrite.c	/^static struct gif_gce$/;"	s	file:
gif_get_byte	lib/gifread.c	/^int gif_get_byte()$/;"	f
gif_header	lib/gifcodes.h	/^struct gif_header$/;"	s
gif_height	lib/gifread.c	/^static int gif_width, gif_height;$/;"	v	file:
gif_image	lib/gifcodes.h	/^struct gif_image$/;"	s
gif_line	lib/gifread.c	/^static int gif_line;$/;"	v	file:
gif_mg	lib/gifread.c	/^static struct memGfx *gif_mg;$/;"	v	typeref:struct:memGfx	file:
gif_out_line	lib/gifread.c	/^int gif_out_line(UBYTE *pixels, int linelen)$/;"	f
gif_wcount	lib/gifcomp.c	/^static long gif_wcount;$/;"	v	file:
gif_width	lib/gifread.c	/^static int gif_width, gif_height;$/;"	v	file:
gif_wpt	lib/gifcomp.c	/^static unsigned char *gif_wpt;$/;"	v	file:
gifsig	lib/gifwrite.c	/^static char gifsig[] = "GIF87a";$/;"	v	file:
giftype	lib/gifcodes.h	/^	char giftype[6];$/;"	m	struct:gif_header
gim	lib/gifread.c	/^static struct gif_image gim;$/;"	v	typeref:struct:gif_image	file:
gisaidAaSeqList	hg/inc/hCommon.h	100;"	d
gisaidSeqList	hg/inc/hCommon.h	99;"	d
gisaidSeqList	hg/inc/hgMaf.h	33;"	d
gisaidSubjList	hg/inc/hCommon.h	98;"	d
gisaidSubjList	hg/inc/hgMaf.h	32;"	d
gl	hg/inc/glDbRep.h	/^struct gl$/;"	s
glCommaIn	hg/lib/glDbRep.c	/^struct gl *glCommaIn(char **pS, struct gl *ret)$/;"	f
glCommaOut	hg/inc/glDbRep.h	44;"	d
glFree	hg/lib/glDbRep.c	/^void glFree(struct gl **pEl)$/;"	f
glFreeList	hg/lib/glDbRep.c	/^void glFreeList(struct gl **pList)$/;"	f
glLoad	hg/lib/glDbRep.c	/^struct gl *glLoad(char **row)$/;"	f
glOutput	hg/lib/glDbRep.c	/^void glOutput(struct gl *el, FILE *f, char sep, char lastSep) $/;"	f
glSig	inc/sig.h	25;"	d
glStaticLoad	hg/lib/glDbRep.c	/^void glStaticLoad(char **row, struct gl *ret)$/;"	f
glTabOut	hg/inc/glDbRep.h	41;"	d
globMatch	lib/wildcmp.c	/^static boolean globMatch(const char *wildCard, const char *string, char single, char multi)$/;"	f	file:
gm99Gb4Chrom	hg/inc/stsMap.h	/^    char *gm99Gb4Chrom;	\/* Chromosome (no chr) from GeneMap99 map or 0 if none *\/$/;"	m	struct:stsMap
gm99Gb4Chrom	hg/inc/stsMarker.h	/^    char *gm99Gb4Chrom;	\/* Chromosome (no chr) from gm99_bg4 map or 0 if none *\/$/;"	m	struct:stsMarker
gm99Gb4Pos	hg/inc/stsMap.h	/^    float gm99Gb4Pos;	\/* Position on gm99_bg4 map *\/$/;"	m	struct:stsMap
gm99Gb4Pos	hg/inc/stsMarker.h	/^    float gm99Gb4Pos;	\/* Position on gm99_bg4 map *\/$/;"	m	struct:stsMarker
gm99g3Chr	hg/inc/stsInfo.h	/^    char *gm99g3Chr;	\/* Chromosome in GeneMap99 G3 map *\/$/;"	m	struct:stsInfo
gm99g3Chr	hg/inc/stsInfo2.h	/^    char *gm99g3Chr;	\/* Chromosome in GeneMap99 G3 map *\/$/;"	m	struct:stsInfo2
gm99g3LOD	hg/inc/stsInfo.h	/^    float gm99g3LOD;	\/* LOD score in GenMap99 G3 map *\/$/;"	m	struct:stsInfo
gm99g3LOD	hg/inc/stsInfo2.h	/^    float gm99g3LOD;	\/* LOD score in GenMap99 G3 map *\/$/;"	m	struct:stsInfo2
gm99g3Name	hg/inc/stsInfo.h	/^    char *gm99g3Name;	\/* Name in GeneMap99 G3 map *\/$/;"	m	struct:stsInfo
gm99g3Name	hg/inc/stsInfo2.h	/^    char *gm99g3Name;	\/* Name in GeneMap99 G3 map *\/$/;"	m	struct:stsInfo2
gm99g3Pos	hg/inc/stsInfo.h	/^    float gm99g3Pos;	\/* Position in GeneMap99 G3 map *\/$/;"	m	struct:stsInfo
gm99g3Pos	hg/inc/stsInfo2.h	/^    float gm99g3Pos;	\/* Position in GeneMap99 G3 map *\/$/;"	m	struct:stsInfo2
gm99gb4Chr	hg/inc/stsInfo.h	/^    char *gm99gb4Chr;	\/* Chromosome in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo
gm99gb4Chr	hg/inc/stsInfo2.h	/^    char *gm99gb4Chr;	\/* Chromosome in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo2
gm99gb4LOD	hg/inc/stsInfo.h	/^    float gm99gb4LOD;	\/* LOD score in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo
gm99gb4LOD	hg/inc/stsInfo2.h	/^    float gm99gb4LOD;	\/* LOD score in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo2
gm99gb4Name	hg/inc/stsInfo.h	/^    char *gm99gb4Name;	\/* Name in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo
gm99gb4Name	hg/inc/stsInfo2.h	/^    char *gm99gb4Name;	\/* Name in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo2
gm99gb4Pos	hg/inc/stsInfo.h	/^    float gm99gb4Pos;	\/* Position in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo
gm99gb4Pos	hg/inc/stsInfo2.h	/^    float gm99gb4Pos;	\/* Position in GeneMap99 GB4 map *\/$/;"	m	struct:stsInfo2
gmChromEnd	hg/inc/switchDbTss.h	/^    unsigned gmChromEnd;	\/* Gene model chromEnd *\/$/;"	m	struct:switchDbTss
gmChromStart	hg/inc/switchDbTss.h	/^    unsigned gmChromStart;	\/* Gene model chromStart *\/$/;"	m	struct:switchDbTss
gmName	hg/inc/switchDbTss.h	/^    char *gmName;	\/* Gene model UID\/name *\/$/;"	m	struct:switchDbTss
gnMinus	hg/inc/lowelabArkinOperonScore.h	/^    float gnMinus;	\/* gene neighbor score *\/$/;"	m	struct:lowelabArkinOperonScore
go	hg/inc/bdgpGeneInfo.h	/^    char *go;	\/* comma-sep list of GO numeric IDs *\/$/;"	m	struct:bdgpGeneInfo
go	hg/inc/bdgpSwissProt.h	/^    char *go;	\/* comma-sep list of GO numeric IDs *\/$/;"	m	struct:bdgpSwissProt
go	hg/inc/bgiGeneInfo.h	/^    char *go;	\/* comma-sep list of GO numeric IDs *\/$/;"	m	struct:bgiGeneInfo
goId	hg/inc/fbTables.h	/^    char *goId;	\/* GO ID *\/$/;"	m	struct:fbGo
goId	hg/inc/goa.h	/^    char *goId;	\/* GO ID - like 'GO:0015888' *\/$/;"	m	struct:goa
goId	hg/inc/goaPart.h	/^    char *goId;	\/* GO ID - like 'GO:0015888' *\/$/;"	m	struct:goaPart
goTerm	hg/inc/tigrCmrGene.h	/^    char *goTerm;	\/* GO term (gene ontology) *\/$/;"	m	struct:tigrCmrGene
goa	hg/inc/goa.h	/^struct goa$/;"	s
goaCommaIn	hg/lib/goa.c	/^struct goa *goaCommaIn(char **pS, struct goa *ret)$/;"	f
goaCommaOut	hg/inc/goa.h	69;"	d
goaFree	hg/lib/goa.c	/^void goaFree(struct goa **pEl)$/;"	f
goaFreeList	hg/lib/goa.c	/^void goaFreeList(struct goa **pList)$/;"	f
goaLoad	hg/lib/goa.c	/^struct goa *goaLoad(char **row)$/;"	f
goaLoadAll	hg/lib/goa.c	/^struct goa *goaLoadAll(char *fileName) $/;"	f
goaLoadAllByChar	hg/lib/goa.c	/^struct goa *goaLoadAllByChar(char *fileName, char chopper) $/;"	f
goaLoadAllByTab	hg/inc/goa.h	47;"	d
goaOutput	hg/lib/goa.c	/^void goaOutput(struct goa *el, FILE *f, char sep, char lastSep) $/;"	f
goaPart	hg/inc/goaPart.h	/^struct goaPart$/;"	s
goaPartCommaIn	hg/lib/goaPart.c	/^struct goaPart *goaPartCommaIn(char **pS, struct goaPart *ret)$/;"	f
goaPartCommaOut	hg/inc/goaPart.h	59;"	d
goaPartFree	hg/lib/goaPart.c	/^void goaPartFree(struct goaPart **pEl)$/;"	f
goaPartFreeList	hg/lib/goaPart.c	/^void goaPartFreeList(struct goaPart **pList)$/;"	f
goaPartLoad	hg/lib/goaPart.c	/^struct goaPart *goaPartLoad(char **row)$/;"	f
goaPartLoadAll	hg/lib/goaPart.c	/^struct goaPart *goaPartLoadAll(char *fileName) $/;"	f
goaPartLoadAllByChar	hg/lib/goaPart.c	/^struct goaPart *goaPartLoadAllByChar(char *fileName, char chopper) $/;"	f
goaPartLoadAllByTab	hg/inc/goaPart.h	37;"	d
goaPartOutput	hg/lib/goaPart.c	/^void goaPartOutput(struct goaPart *el, FILE *f, char sep, char lastSep) $/;"	f
goaPartStaticLoad	hg/lib/goaPart.c	/^void goaPartStaticLoad(char **row, struct goaPart *ret)$/;"	f
goaPartTabOut	hg/inc/goaPart.h	56;"	d
goaStaticLoad	hg/lib/goa.c	/^void goaStaticLoad(char **row, struct goa *ret)$/;"	f
goaTabOut	hg/inc/goa.h	66;"	d
good	hg/inc/coordConv.h	/^    boolean good; \/** TRUE if "to" coordConv is valid, i.e. conversion was successful *\/$/;"	m	struct:coordConvRep
goodMatch	jkOwnLib/gfPcrLib.c	/^static boolean goodMatch(char *a, char *b, int size)$/;"	f	file:
googleAnalytics	hg/lib/googleAnalytics.c	/^void googleAnalytics()$/;"	f
gop	lib/mafScore.c	/^static int gop[256], gtype[128];$/;"	v	file:
gotAllGenbankGrepIndexFiles	hg/lib/hgFind.c	/^static boolean gotAllGenbankGrepIndexFiles(char *db, struct hgFindSpec *hfs,$/;"	f	file:
gotBgColor	lib/htmshell.c	/^boolean gotBgColor = FALSE;$/;"	v
gotError	inc/errCatch.h	/^    boolean gotError;		 \/* Some sort of error was caught. *\/$/;"	m	struct:errCatch
gotFullText	hg/lib/hgFind.c	/^static boolean gotFullText(char *db)$/;"	f	file:
gotWarnings	hg/lib/web.c	/^static boolean gotWarnings = FALSE;$/;"	v	file:
gpErrFh	hg/lib/genePred.c	/^static FILE *gpErrFh = NULL;  \/* error output for gpError *\/$/;"	v	file:
gpError	hg/lib/genePred.c	/^static void gpError(char *format, ...)$/;"	f	file:
gpErrorCnt	hg/lib/genePred.c	/^static int gpErrorCnt = 0;  \/* error count for gpError *\/$/;"	v	file:
gpFx	hg/inc/gpFx.h	/^struct gpFx$/;"	s
gpFxChangedCodingTranscript	hg/lib/gpFx.c	/^struct gpFx *gpFxChangedCodingTranscript( struct allele *allele, struct genePred *pred, $/;"	f
gpFxChangedNoncodingTranscript	hg/lib/gpFx.c	/^struct gpFx *gpFxChangedNoncodingTranscript( struct allele *allele, struct genePred *pred, $/;"	f
gpFxCheckBackground	hg/lib/gpFx.c	/^static struct gpFx *gpFxCheckBackground(struct variant *variant, $/;"	f	file:
gpFxCheckExons	hg/lib/gpFx.c	/^static struct gpFx *gpFxCheckExons(struct variant *variant, $/;"	f	file:
gpFxCheckIntrons	hg/lib/gpFx.c	/^static struct gpFx *gpFxCheckIntrons(struct variant *variant, $/;"	f	file:
gpFxCheckUtr	hg/lib/gpFx.c	/^struct gpFx *gpFxCheckUtr( struct allele *allele, struct genePred *pred, $/;"	f
gpFxInCdsDeletion	hg/lib/gpFx.c	/^struct gpFx *gpFxInCdsDeletion( struct allele *allele, struct genePred *pred, $/;"	f
gpFxInExon	hg/lib/gpFx.c	/^struct gpFx *gpFxInExon(struct allele *allele, struct genePred *pred, $/;"	f
gpFxModifySequence	hg/lib/gpFx.c	/^char *gpFxModifySequence(struct allele *allele, struct genePred *pred, $/;"	f
gpFxPredEffect	hg/lib/gpFx.c	/^struct gpFx *gpFxPredEffect(struct variant *variant, struct genePred *pred,$/;"	f
gpPartOutAsBed	hg/lib/genePred.c	/^void gpPartOutAsBed(struct genePred *gp, int start, int end, FILE *f, $/;"	f
gpsExact	hg/inc/genePix.h	/^    gpsExact = 1,$/;"	e	enum:genePixSearchType
gpsLike	hg/inc/genePix.h	/^    gpsLike = 3,$/;"	e	enum:genePixSearchType
gpsNone	hg/inc/genePix.h	/^    gpsNone = 0,$/;"	e	enum:genePixSearchType
gpsPrefix	hg/inc/genePix.h	/^    gpsPrefix = 2,$/;"	e	enum:genePixSearchType
gqStart	hg/inc/chainView.h	/^    unsigned gqStart;	\/* start in query *\/$/;"	m	struct:chainView
grabAroundIntron	jkOwnLib/ffSeedExtend.c	/^static void grabAroundIntron(char *hpStart, int iPos, int iSize,$/;"	f	file:
graphicControlLabel	lib/gifwrite.c	/^    unsigned char extensionIntroducer, graphicControlLabel, blockSize;$/;"	m	struct:gif_gce	file:
gratorRowLists	lib/annoFormatTab.c	/^    struct slRef *gratorRowLists;	\/\/ Accumulated from each grator (0 or more annoRows each)$/;"	m	struct:annoFormatTab	typeref:struct:annoFormatTab::slRef	file:
grayLabels	hg/lib/hui.c	/^static char *grayLabels[] =$/;"	v	file:
grayValues	hg/lib/hui.c	/^static char *grayValues[] =$/;"	v	file:
grid	hg/inc/stanMad.h	/^    int grid;	\/* unknown *\/$/;"	m	struct:stanMad
group	hg/inc/hgMaf.h	/^    int group;$/;"	m	struct:wigMafSpecies
group	hg/inc/microarray.h	/^    char *group;	\/* Tissue\/group name. *\/$/;"	m	struct:maMedSpec
group	inc/gff.h	/^    char *group;    \/* Group line is in. Not allocated here.  Corresponds to transcript_id in GTF *\/$/;"	m	struct:gffLine
group	lib/oldGff.c	/^    char group[128];  \/* Name of gene  cosmid.number. *\/$/;"	m	struct:gffSegLine	file:
groupHash	inc/gff.h	/^    struct hash *groupHash;	\/* Associates group names and gffGroups. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::hash
groupLeader	lib/pipeline.c	/^    pid_t groupLeader;         \/* process group id, or -1 if not set. This is pid of group leader *\/$/;"	m	struct:pipeline	file:
groupLeaderRun	lib/pipeline.c	/^static void groupLeaderRun(struct pipeline* pl, int stdinFd, int stdoutFd, int stderrFd,$/;"	f	file:
groupLeaderWait	lib/pipeline.c	/^static int groupLeaderWait(struct pipeline *pl)$/;"	f	file:
groupList	inc/gff.h	/^    struct gffGroup *groupList; \/* A list of groups. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::gffGroup
groupName	hg/inc/customTrack.h	/^    char *groupName;		\/* Group name if any. *\/$/;"	m	struct:customTrack
groupSizes	hg/inc/microarray.h	/^    int *groupSizes;$/;"	m	struct:maGrouping
groupTag	hg/lib/hui.c	/^    char * groupTag;$/;"	m	struct:_members	file:
groupTitle	hg/lib/hui.c	/^    char * groupTitle;$/;"	m	struct:_members	file:
groupWait	lib/pipeline.c	/^static void groupWait(struct pipeline *pl)$/;"	f	file:
groupingLoL	hg/lib/microarray.c	/^static struct slRef *groupingLoL(struct maGrouping *grouping)$/;"	f	file:
growthCondition	hg/inc/growthCondition.h	/^struct growthCondition$/;"	s
growthCondition	hg/inc/transRegCodeCondition.h	/^    char *growthCondition;	\/* Growth condition seen in *\/$/;"	m	struct:transRegCodeCondition
growthConditionCommaIn	hg/lib/growthCondition.c	/^struct growthCondition *growthConditionCommaIn(char **pS, struct growthCondition *ret)$/;"	f
growthConditionCommaOut	hg/inc/growthCondition.h	57;"	d
growthConditionFree	hg/lib/growthCondition.c	/^void growthConditionFree(struct growthCondition **pEl)$/;"	f
growthConditionFreeList	hg/lib/growthCondition.c	/^void growthConditionFreeList(struct growthCondition **pList)$/;"	f
growthConditionLoad	hg/lib/growthCondition.c	/^struct growthCondition *growthConditionLoad(char **row)$/;"	f
growthConditionLoadAll	hg/lib/growthCondition.c	/^struct growthCondition *growthConditionLoadAll(char *fileName) $/;"	f
growthConditionLoadAllByChar	hg/lib/growthCondition.c	/^struct growthCondition *growthConditionLoadAllByChar(char *fileName, char chopper) $/;"	f
growthConditionLoadAllByTab	hg/inc/growthCondition.h	35;"	d
growthConditionOutput	hg/lib/growthCondition.c	/^void growthConditionOutput(struct growthCondition *el, FILE *f, char sep, char lastSep) $/;"	f
growthConditionStaticLoad	hg/lib/growthCondition.c	/^void growthConditionStaticLoad(char **row, struct growthCondition *ret)$/;"	f
growthConditionTabOut	hg/inc/growthCondition.h	54;"	d
grp	hg/inc/grp.h	/^struct grp$/;"	s
grp	hg/inc/trackDb.h	/^    char *grp;	\/* Which group track belongs to *\/$/;"	m	struct:trackDb
grpCmpName	hg/lib/grp.c	/^int grpCmpName(const void *va, const void *vb)$/;"	f
grpCmpPriority	hg/lib/grp.c	/^int grpCmpPriority(const void *va, const void *vb)$/;"	f
grpCommaIn	hg/lib/grp.c	/^struct grp *grpCommaIn(char **pS, struct grp *ret)$/;"	f
grpCommaOut	hg/inc/grp.h	51;"	d
grpFree	hg/lib/grp.c	/^void grpFree(struct grp **pEl)$/;"	f
grpFreeList	hg/lib/grp.c	/^void grpFreeList(struct grp **pList)$/;"	f
grpLoad	hg/lib/grp.c	/^static struct grp *grpLoad(char **row, int fieldCount)$/;"	f	file:
grpLoadAll	hg/lib/grp.c	/^struct grp *grpLoadAll(char *fileName) $/;"	f
grpLoadByQuery	hg/lib/grp.c	/^struct grp *grpLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
grpOutput	hg/lib/grp.c	/^void grpOutput(struct grp *el, FILE *f, char sep, char lastSep) $/;"	f
grpStaticLoad	hg/lib/grp.c	/^void grpStaticLoad(char **row, struct grp *ret)$/;"	f
grpSuperimpose	hg/lib/grp.c	/^void grpSuperimpose(struct grp **listA, struct grp **listB)$/;"	f
grpTabOut	hg/inc/grp.h	48;"	d
gsToUcsc	hg/lib/hCommon.c	/^void gsToUcsc(char *gsName, char *ucscName)$/;"	f
gsidSeqList	hg/inc/hgMaf.h	30;"	d
gsidSubjList	hg/inc/hgMaf.h	29;"	d
gtEnd	hg/inc/chainView.h	/^    unsigned gtEnd;	\/* Alignment end position in target *\/$/;"	m	struct:chainView
gtFormatDefs	inc/vcf.h	/^    struct vcfInfoDef *gtFormatDefs;	\/\/ Header's defs of GENOTYPE compnts. listed in FORMAT col.$/;"	m	struct:vcfFile	typeref:struct:vcfFile::vcfInfoDef
gtStart	hg/inc/chainView.h	/^    unsigned gtStart;	\/* Alignment start position in target *\/$/;"	m	struct:chainView
gtfFactory	hg/lib/customFactory.c	/^static struct customFactory gtfFactory =$/;"	v	typeref:struct:customFactory	file:
gtfRecognizer	hg/lib/customFactory.c	/^static boolean gtfRecognizer(struct customFactory *fac,$/;"	f	file:
gtype	lib/mafScore.c	/^static int gop[256], gtype[128];$/;"	v	file:
guessMarkerType	hg/lib/chromGraphFactory.c	/^static char *guessMarkerType(struct slName *lineList, Chopper chopper, $/;"	f	file:
guideLen	hg/inc/snoRNAs.h	/^    char *guideLen;	\/* Length of guide region *\/$/;"	m	struct:snoRNAs
guideLen	hg/lib/snoRNAs.h	/^    char *guideLen;	\/* Length of guide region *\/$/;"	m	struct:snoRNAs
guideScore	hg/inc/snoRNAs.h	/^    char *guideScore;	\/* Guide region score *\/$/;"	m	struct:snoRNAs
guideScore	hg/lib/snoRNAs.h	/^    char *guideScore;	\/* Guide region score *\/$/;"	m	struct:snoRNAs
guideStr	hg/inc/snoRNAs.h	/^    char *guideStr;	\/* Guide region string *\/$/;"	m	struct:snoRNAs
guideStr	hg/lib/snoRNAs.h	/^    char *guideStr;	\/* Guide region string *\/$/;"	m	struct:snoRNAs
gv	hg/inc/gv.h	/^struct gv$/;"	s
gvAccuracyDbValue	hg/lib/gvUi.c	/^unsigned gvAccuracyDbValue[] = {$/;"	v
gvAccuracyLabel	hg/lib/gvUi.c	/^char *gvAccuracyLabel[] = {$/;"	v
gvAccuracySize	hg/lib/gvUi.c	/^int gvAccuracySize = ArraySize(gvAccuracyLabel);$/;"	v
gvAccuracyString	hg/lib/gvUi.c	/^char *gvAccuracyString[] = {$/;"	v
gvAttr	hg/inc/gv.h	/^struct gvAttr$/;"	s
gvAttrCategory	hg/lib/gvUi.c	/^char *gvAttrCategory[] = {$/;"	v
gvAttrCommaIn	hg/lib/gv.c	/^struct gvAttr *gvAttrCommaIn(char **pS, struct gvAttr *ret)$/;"	f
gvAttrCommaOut	hg/inc/gv.h	325;"	d
gvAttrFree	hg/lib/gv.c	/^void gvAttrFree(struct gvAttr **pEl)$/;"	f
gvAttrFreeList	hg/lib/gv.c	/^void gvAttrFreeList(struct gvAttr **pList)$/;"	f
gvAttrLoad	hg/lib/gv.c	/^struct gvAttr *gvAttrLoad(char **row)$/;"	f
gvAttrLoadAll	hg/lib/gv.c	/^struct gvAttr *gvAttrLoadAll(char *fileName) $/;"	f
gvAttrLoadAllByChar	hg/lib/gv.c	/^struct gvAttr *gvAttrLoadAllByChar(char *fileName, char chopper) $/;"	f
gvAttrLoadAllByTab	hg/inc/gv.h	278;"	d
gvAttrLoadByQuery	hg/lib/gv.c	/^struct gvAttr *gvAttrLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
gvAttrLong	hg/inc/gv.h	/^struct gvAttrLong$/;"	s
gvAttrLongCommaIn	hg/lib/gv.c	/^struct gvAttrLong *gvAttrLongCommaIn(char **pS, struct gvAttrLong *ret)$/;"	f
gvAttrLongCommaOut	hg/inc/gv.h	481;"	d
gvAttrLongFree	hg/lib/gv.c	/^void gvAttrLongFree(struct gvAttrLong **pEl)$/;"	f
gvAttrLongFreeList	hg/lib/gv.c	/^void gvAttrLongFreeList(struct gvAttrLong **pList)$/;"	f
gvAttrLongLoad	hg/lib/gv.c	/^struct gvAttrLong *gvAttrLongLoad(char **row)$/;"	f
gvAttrLongLoadAll	hg/lib/gv.c	/^struct gvAttrLong *gvAttrLongLoadAll(char *fileName) $/;"	f
gvAttrLongLoadAllByChar	hg/lib/gv.c	/^struct gvAttrLong *gvAttrLongLoadAllByChar(char *fileName, char chopper) $/;"	f
gvAttrLongLoadAllByTab	hg/inc/gv.h	434;"	d
gvAttrLongLoadByQuery	hg/lib/gv.c	/^struct gvAttrLong *gvAttrLongLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
gvAttrLongOutput	hg/lib/gv.c	/^void gvAttrLongOutput(struct gvAttrLong *el, FILE *f, char sep, char lastSep) $/;"	f
gvAttrLongSaveToDb	hg/lib/gv.c	/^void gvAttrLongSaveToDb(struct sqlConnection *conn, struct gvAttrLong *el, char *tableName, int updateSize)$/;"	f
gvAttrLongSaveToDbEscaped	hg/lib/gv.c	/^void gvAttrLongSaveToDbEscaped(struct sqlConnection *conn, struct gvAttrLong *el, char *tableName, int updateSize)$/;"	f
gvAttrLongStaticLoad	hg/lib/gv.c	/^void gvAttrLongStaticLoad(char **row, struct gvAttrLong *ret)$/;"	f
gvAttrLongTabOut	hg/inc/gv.h	478;"	d
gvAttrOutput	hg/lib/gv.c	/^void gvAttrOutput(struct gvAttr *el, FILE *f, char sep, char lastSep) $/;"	f
gvAttrSaveToDb	hg/lib/gv.c	/^void gvAttrSaveToDb(struct sqlConnection *conn, struct gvAttr *el, char *tableName, int updateSize)$/;"	f
gvAttrSaveToDbEscaped	hg/lib/gv.c	/^void gvAttrSaveToDbEscaped(struct sqlConnection *conn, struct gvAttr *el, char *tableName, int updateSize)$/;"	f
gvAttrSize	hg/lib/gvUi.c	/^int gvAttrSize = ArraySize(gvAttrTypeKey);$/;"	v
gvAttrStaticLoad	hg/lib/gv.c	/^void gvAttrStaticLoad(char **row, struct gvAttr *ret)$/;"	f
gvAttrTabOut	hg/inc/gv.h	322;"	d
gvAttrTypeDisplay	hg/lib/gvUi.c	/^char *gvAttrTypeDisplay[] = {$/;"	v
gvAttrTypeKey	hg/lib/gvUi.c	/^char *gvAttrTypeKey[] = {$/;"	v
gvColorDAAttrVal	hg/lib/gvUi.c	/^char *gvColorDAAttrVal[] = {$/;"	v
gvColorDADefault	hg/lib/gvUi.c	/^char *gvColorDADefault[] = {$/;"	v
gvColorDALabels	hg/lib/gvUi.c	/^char *gvColorDALabels[] = {$/;"	v
gvColorDASize	hg/lib/gvUi.c	/^int gvColorDASize = ArraySize(gvColorDAStrings);$/;"	v
gvColorDAStrings	hg/lib/gvUi.c	/^char *gvColorDAStrings[] = {$/;"	v
gvColorLabelSize	hg/lib/gvUi.c	/^int gvColorLabelSize = ArraySize(gvColorLabels);$/;"	v
gvColorLabels	hg/lib/gvUi.c	/^char *gvColorLabels[] = {$/;"	v
gvColorTypeBaseChangeType	hg/lib/gvUi.c	/^char *gvColorTypeBaseChangeType[] = {$/;"	v
gvColorTypeDefault	hg/lib/gvUi.c	/^char *gvColorTypeDefault[] = {$/;"	v
gvColorTypeLabels	hg/lib/gvUi.c	/^char *gvColorTypeLabels[] = {$/;"	v
gvColorTypeSize	hg/lib/gvUi.c	/^int gvColorTypeSize = ArraySize(gvColorTypeStrings);$/;"	v
gvColorTypeStrings	hg/lib/gvUi.c	/^char *gvColorTypeStrings[] = {$/;"	v
gvCommaIn	hg/lib/gv.c	/^struct gv *gvCommaIn(char **pS, struct gv *ret)$/;"	f
gvCommaOut	hg/inc/gv.h	89;"	d
gvDisclaimer	hg/lib/gvUi.c	/^void gvDisclaimer ()$/;"	f
gvFilterDADbValue	hg/lib/gvUi.c	/^char *gvFilterDADbValue[] = {$/;"	v
gvFilterDALabel	hg/lib/gvUi.c	/^char *gvFilterDALabel[] = {$/;"	v
gvFilterDASize	hg/lib/gvUi.c	/^int gvFilterDASize = ArraySize(gvFilterDAString);$/;"	v
gvFilterDAString	hg/lib/gvUi.c	/^char *gvFilterDAString[] = {$/;"	v
gvFree	hg/lib/gv.c	/^void gvFree(struct gv **pEl)$/;"	f
gvFreeList	hg/lib/gv.c	/^void gvFreeList(struct gv **pList)$/;"	f
gvLink	hg/inc/gv.h	/^struct gvLink$/;"	s
gvLinkCommaIn	hg/lib/gv.c	/^struct gvLink *gvLinkCommaIn(char **pS, struct gvLink *ret)$/;"	f
gvLinkCommaOut	hg/inc/gv.h	404;"	d
gvLinkFree	hg/lib/gv.c	/^void gvLinkFree(struct gvLink **pEl)$/;"	f
gvLinkFreeList	hg/lib/gv.c	/^void gvLinkFreeList(struct gvLink **pList)$/;"	f
gvLinkLoad	hg/lib/gv.c	/^struct gvLink *gvLinkLoad(char **row)$/;"	f
gvLinkLoadAll	hg/lib/gv.c	/^struct gvLink *gvLinkLoadAll(char *fileName) $/;"	f
gvLinkLoadAllByChar	hg/lib/gv.c	/^struct gvLink *gvLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
gvLinkLoadAllByTab	hg/inc/gv.h	357;"	d
gvLinkLoadByQuery	hg/lib/gv.c	/^struct gvLink *gvLinkLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
gvLinkOutput	hg/lib/gv.c	/^void gvLinkOutput(struct gvLink *el, FILE *f, char sep, char lastSep) $/;"	f
gvLinkSaveToDb	hg/lib/gv.c	/^void gvLinkSaveToDb(struct sqlConnection *conn, struct gvLink *el, char *tableName, int updateSize)$/;"	f
gvLinkSaveToDbEscaped	hg/lib/gv.c	/^void gvLinkSaveToDbEscaped(struct sqlConnection *conn, struct gvLink *el, char *tableName, int updateSize)$/;"	f
gvLinkStaticLoad	hg/lib/gv.c	/^void gvLinkStaticLoad(char **row, struct gvLink *ret)$/;"	f
gvLinkTabOut	hg/inc/gv.h	401;"	d
gvLoad	hg/lib/gv.c	/^struct gv *gvLoad(char **row)$/;"	f
gvLoadAll	hg/lib/gv.c	/^struct gv *gvLoadAll(char *fileName) $/;"	f
gvLoadAllByChar	hg/lib/gv.c	/^struct gv *gvLoadAllByChar(char *fileName, char chopper) $/;"	f
gvLoadAllByTab	hg/inc/gv.h	42;"	d
gvLoadByQuery	hg/lib/gv.c	/^struct gv *gvLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
gvLocationDbValue	hg/lib/gvUi.c	/^char *gvLocationDbValue[] = {$/;"	v
gvLocationLabel	hg/lib/gvUi.c	/^char *gvLocationLabel[] = {$/;"	v
gvLocationSize	hg/lib/gvUi.c	/^int gvLocationSize = ArraySize(gvLocationLabel);$/;"	v
gvLocationString	hg/lib/gvUi.c	/^char *gvLocationString[] = {$/;"	v
gvOutput	hg/lib/gv.c	/^void gvOutput(struct gv *el, FILE *f, char sep, char lastSep) $/;"	f
gvPos	hg/inc/gv.h	/^struct gvPos$/;"	s
gvPosCommaIn	hg/lib/gv.c	/^struct gvPos *gvPosCommaIn(char **pS, struct gvPos *ret)$/;"	f
gvPosCommaOut	hg/inc/gv.h	171;"	d
gvPosFree	hg/lib/gv.c	/^void gvPosFree(struct gvPos **pEl)$/;"	f
gvPosFreeList	hg/lib/gv.c	/^void gvPosFreeList(struct gvPos **pList)$/;"	f
gvPosLoad	hg/lib/gv.c	/^struct gvPos *gvPosLoad(char **row)$/;"	f
gvPosLoadAll	hg/lib/gv.c	/^struct gvPos *gvPosLoadAll(char *fileName) $/;"	f
gvPosLoadAllByChar	hg/lib/gv.c	/^struct gvPos *gvPosLoadAllByChar(char *fileName, char chopper) $/;"	f
gvPosLoadAllByTab	hg/inc/gv.h	124;"	d
gvPosLoadByQuery	hg/lib/gv.c	/^struct gvPos *gvPosLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
gvPosOutput	hg/lib/gv.c	/^void gvPosOutput(struct gvPos *el, FILE *f, char sep, char lastSep) $/;"	f
gvPosSaveToDb	hg/lib/gv.c	/^void gvPosSaveToDb(struct sqlConnection *conn, struct gvPos *el, char *tableName, int updateSize)$/;"	f
gvPosSaveToDbEscaped	hg/lib/gv.c	/^void gvPosSaveToDbEscaped(struct sqlConnection *conn, struct gvPos *el, char *tableName, int updateSize)$/;"	f
gvPosStaticLoad	hg/lib/gv.c	/^void gvPosStaticLoad(char **row, struct gvPos *ret)$/;"	f
gvPosTabOut	hg/inc/gv.h	168;"	d
gvSaveToDb	hg/lib/gv.c	/^void gvSaveToDb(struct sqlConnection *conn, struct gv *el, char *tableName, int updateSize)$/;"	f
gvSaveToDbEscaped	hg/lib/gv.c	/^void gvSaveToDbEscaped(struct sqlConnection *conn, struct gv *el, char *tableName, int updateSize)$/;"	f
gvSrc	hg/inc/gv.h	/^struct gvSrc$/;"	s
gvSrcCommaIn	hg/lib/gv.c	/^struct gvSrc *gvSrcCommaIn(char **pS, struct gvSrc *ret)$/;"	f
gvSrcCommaOut	hg/inc/gv.h	248;"	d
gvSrcDbValue	hg/lib/gvUi.c	/^char *gvSrcDbValue[] = {$/;"	v
gvSrcFree	hg/lib/gv.c	/^void gvSrcFree(struct gvSrc **pEl)$/;"	f
gvSrcFreeList	hg/lib/gv.c	/^void gvSrcFreeList(struct gvSrc **pList)$/;"	f
gvSrcLoad	hg/lib/gv.c	/^struct gvSrc *gvSrcLoad(char **row)$/;"	f
gvSrcLoadAll	hg/lib/gv.c	/^struct gvSrc *gvSrcLoadAll(char *fileName) $/;"	f
gvSrcLoadAllByChar	hg/lib/gv.c	/^struct gvSrc *gvSrcLoadAllByChar(char *fileName, char chopper) $/;"	f
gvSrcLoadAllByTab	hg/inc/gv.h	201;"	d
gvSrcLoadByQuery	hg/lib/gv.c	/^struct gvSrc *gvSrcLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
gvSrcOutput	hg/lib/gv.c	/^void gvSrcOutput(struct gvSrc *el, FILE *f, char sep, char lastSep) $/;"	f
gvSrcSaveToDb	hg/lib/gv.c	/^void gvSrcSaveToDb(struct sqlConnection *conn, struct gvSrc *el, char *tableName, int updateSize)$/;"	f
gvSrcSaveToDbEscaped	hg/lib/gv.c	/^void gvSrcSaveToDbEscaped(struct sqlConnection *conn, struct gvSrc *el, char *tableName, int updateSize)$/;"	f
gvSrcSize	hg/lib/gvUi.c	/^int gvSrcSize = ArraySize(gvSrcString);$/;"	v
gvSrcStaticLoad	hg/lib/gv.c	/^void gvSrcStaticLoad(char **row, struct gvSrc *ret)$/;"	f
gvSrcString	hg/lib/gvUi.c	/^char *gvSrcString[] = {$/;"	v
gvSrcTabOut	hg/inc/gv.h	245;"	d
gvStaticLoad	hg/lib/gv.c	/^void gvStaticLoad(char **row, struct gv *ret)$/;"	f
gvTabOut	hg/inc/gv.h	86;"	d
gvTypeDbValue	hg/lib/gvUi.c	/^char *gvTypeDbValue[] = {$/;"	v
gvTypeLabel	hg/lib/gvUi.c	/^char *gvTypeLabel[] = {$/;"	v
gvTypeSize	hg/lib/gvUi.c	/^int gvTypeSize = ArraySize(gvTypeString);$/;"	v
gvTypeString	hg/lib/gvUi.c	/^char *gvTypeString[] = {$/;"	v
gwasCatalog	hg/inc/gwasCatalog.h	/^struct gwasCatalog$/;"	s
gwasCatalogCnv	hg/inc/gwasCatalog.h	/^enum gwasCatalogCnv$/;"	g
gwasCatalogCommaIn	hg/lib/gwasCatalog.c	/^struct gwasCatalog *gwasCatalogCommaIn(char **pS, struct gwasCatalog *ret)$/;"	f
gwasCatalogCommaOut	hg/inc/gwasCatalog.h	81;"	d
gwasCatalogFree	hg/lib/gwasCatalog.c	/^void gwasCatalogFree(struct gwasCatalog **pEl)$/;"	f
gwasCatalogFreeList	hg/lib/gwasCatalog.c	/^void gwasCatalogFreeList(struct gwasCatalog **pList)$/;"	f
gwasCatalogLoad	hg/lib/gwasCatalog.c	/^struct gwasCatalog *gwasCatalogLoad(char **row)$/;"	f
gwasCatalogLoadAll	hg/lib/gwasCatalog.c	/^struct gwasCatalog *gwasCatalogLoadAll(char *fileName) $/;"	f
gwasCatalogLoadAllByChar	hg/lib/gwasCatalog.c	/^struct gwasCatalog *gwasCatalogLoadAllByChar(char *fileName, char chopper) $/;"	f
gwasCatalogLoadAllByTab	hg/inc/gwasCatalog.h	59;"	d
gwasCatalogN	hg/inc/gwasCatalog.h	/^    gwasCatalogN = 1,$/;"	e	enum:gwasCatalogCnv
gwasCatalogOutput	hg/lib/gwasCatalog.c	/^void gwasCatalogOutput(struct gwasCatalog *el, FILE *f, char sep, char lastSep) $/;"	f
gwasCatalogStaticLoad	hg/lib/gwasCatalog.c	/^void gwasCatalogStaticLoad(char **row, struct gwasCatalog *ret)$/;"	f
gwasCatalogTabOut	hg/inc/gwasCatalog.h	78;"	d
gwasCatalogY	hg/inc/gwasCatalog.h	/^    gwasCatalogY = 0,$/;"	e	enum:gwasCatalogCnv
h	inc/memgfx.h	/^    double h;$/;"	m	struct:hslColor
h	inc/memgfx.h	/^    double h;$/;"	m	struct:hsvColor
hAddBinToQuery	hg/lib/hdb.c	/^void hAddBinToQuery(int start, int end, struct dyString *query)$/;"	f
hAddBinToQueryExtended	hg/lib/hdb.c	/^static void hAddBinToQueryExtended(char *binField, int start, int end,$/;"	f	file:
hAddBinToQueryGeneral	hg/lib/hdb.c	/^void hAddBinToQueryGeneral(char *binField, int start, int end,$/;"	f
hAddBinToQueryStandard	hg/lib/hdb.c	/^static void hAddBinToQueryStandard(char *binField, int start, int end,$/;"	f	file:
hAllChromNames	hg/lib/hdb.c	/^struct slName *hAllChromNames(char *db)$/;"	f
hAllocConn	hg/lib/hdb.c	/^struct sqlConnection *hAllocConn(char *db)$/;"	f
hAllocConnDbTbl	hg/lib/hdb.c	/^struct sqlConnection *hAllocConnDbTbl(char *spec, char **tableRet, char *defaultDb)$/;"	f
hAllocConnMaybe	hg/lib/hdb.c	/^struct sqlConnection *hAllocConnMaybe(char *db)$/;"	f
hAllocConnProfile	hg/lib/hdb.c	/^struct sqlConnection *hAllocConnProfile(char *profileName, char *db)$/;"	f
hAllocConnProfileMaybe	hg/lib/hdb.c	/^struct sqlConnection *hAllocConnProfileMaybe(char *profileName, char *db)$/;"	f
hAllocConnProfileTbl	hg/lib/hdb.c	/^struct sqlConnection *hAllocConnProfileTbl(char *db, char *spec, char **tableRet)$/;"	f
hAllocConnProfileTblInternal	hg/lib/hdb.c	/^static struct sqlConnection *hAllocConnProfileTblInternal(char *db, char *spec, char **tableRet, bool abortOnError)$/;"	f	file:
hAllocConnProfileTblMaybe	hg/lib/hdb.c	/^struct sqlConnection *hAllocConnProfileTblMaybe(char *db, char *spec, char **tableRet)$/;"	f
hAllocConnTrack	hg/lib/hdb.c	/^struct sqlConnection *hAllocConnTrack(char *db, struct trackDb *tdb)$/;"	f
hArchiveCentralMkCache	hg/lib/hdb.c	/^static void hArchiveCentralMkCache()$/;"	f	file:
hArchiveDbDbList	hg/lib/hdb.c	/^struct dbDb *hArchiveDbDbList()$/;"	f
hArchiveDbDbOptionalField	hg/lib/hdb.c	/^char *hArchiveDbDbOptionalField(char *database, char *field)$/;"	f
hArchiveDbExists	hg/lib/hdb.c	/^boolean hArchiveDbExists(char *database)$/;"	f
hArchiveOrCentralDbDbOptionalField	hg/lib/hdb.c	/^char *hArchiveOrCentralDbDbOptionalField(char *database, char *field, boolean archive)$/;"	f
hArchiveOrganism	hg/lib/hdb.c	/^char *hArchiveOrganism(char *database)$/;"	f
hBackgroundImage	hg/lib/hui.c	/^char *hBackgroundImage()$/;"	f
hBrowserName	hg/lib/hdb.c	/^char *hBrowserName()$/;"	f
hButton	hg/lib/hPrint.c	/^void hButton(char *name, char *label)$/;"	f
hButtonWithMsg	hg/lib/hPrint.c	/^void hButtonWithMsg(char *name, char *label, char *msg)$/;"	f
hButtonWithOnClick	hg/lib/hPrint.c	/^void hButtonWithOnClick(char *name, char *label, char *msg, char *onClick)$/;"	f
hCanHaveSplitTables	hg/lib/hdb.c	/^boolean hCanHaveSplitTables(char *db)$/;"	f
hCarefulTrackOpenVis	hg/lib/hgFind.c	/^char *hCarefulTrackOpenVis(char *db, char *trackName)$/;"	f
hCartMkCache	hg/lib/hdb.c	/^static void hCartMkCache()$/;"	f	file:
hCentralMkCache	hg/lib/hdb.c	/^static void hCentralMkCache()$/;"	f	file:
hCgiRoot	hg/lib/hui.c	/^char *hCgiRoot()$/;"	f
hChars	inc/seqOut.h	/^    char hChars[256];$/;"	m	struct:baf
hCheckBox	hg/lib/hPrint.c	/^void hCheckBox(char *varName, boolean checked)$/;"	f
hCheckBoxJS	hg/lib/hPrint.c	/^void hCheckBoxJS(char *varName, boolean checked, char *javascript)$/;"	f
hChromBand	hg/lib/hdb.c	/^boolean hChromBand(char *db, char *chrom, int pos, char retBand[HDB_MAX_BAND_STRING])$/;"	f
hChromBandConn	hg/lib/hdb.c	/^boolean hChromBandConn(struct sqlConnection *conn,$/;"	f
hChromCount	hg/lib/hdb.c	/^int hChromCount(char *db)$/;"	f
hChromList	hg/lib/hdb.c	/^struct slName *hChromList(char *db)$/;"	f
hChromQuery	hg/lib/hdb.c	/^struct sqlResult *hChromQuery(struct sqlConnection *conn,$/;"	f
hChromSeq	hg/lib/hdb.c	/^struct dnaSeq *hChromSeq(char *db, char *chrom, int start, int end)$/;"	f
hChromSeqFromPath	hg/lib/hdb.c	/^struct dnaSeq *hChromSeqFromPath(char *nibPath, char *db, char *chrom,$/;"	f
hChromSeqMixed	hg/lib/hdb.c	/^struct dnaSeq *hChromSeqMixed(char *db, char *chrom, int start, int end)$/;"	f
hChromSeqMixedFromPath	hg/lib/hdb.c	/^struct dnaSeq *hChromSeqMixedFromPath(char *nibPath, char *db, char *chrom,$/;"	f
hChromSize	hg/lib/hdb.c	/^int hChromSize(char *db, char *chromName)$/;"	f
hChromSizeHash	hg/lib/hdb.c	/^struct hash *hChromSizeHash(char *db)$/;"	f
hClade	hg/lib/hdb.c	/^char *hClade(char *genome)$/;"	f
hCompositeDisplayViewDropDowns	hg/lib/hui.c	/^static boolean hCompositeDisplayViewDropDowns(char *db, struct cart *cart, struct trackDb *parentTdb)$/;"	f	file:
hCompositeTrackDbForSubtrack	hg/lib/hdb.c	/^struct trackDb *hCompositeTrackDbForSubtrack(char *db, struct trackDb *sTdb)$/;"	f
hCompositeUi	hg/lib/hui.c	/^void hCompositeUi(char *db, struct cart *cart, struct trackDb *tdb,$/;"	f
hConnectArchiveCentral	hg/lib/hdb.c	/^struct sqlConnection *hConnectArchiveCentral()$/;"	f
hConnectCart	hg/lib/hdb.c	/^struct sqlConnection *hConnectCart()$/;"	f
hConnectCentral	hg/lib/hdb.c	/^struct sqlConnection *hConnectCentral()$/;"	f
hCountDown	inc/seqOut.h	/^    bool hCountDown;     \/* True if want numbers counting down. *\/$/;"	m	struct:baf
hCurPos	inc/seqOut.h	/^    int hCurPos;$/;"	m	struct:baf
hCytoBandCentromereColor	hg/lib/hCytoBand.c	/^Color hCytoBandCentromereColor(struct hvGfx *hvg)$/;"	f
hCytoBandColor	hg/lib/hCytoBand.c	/^Color hCytoBandColor(struct cytoBand *band, struct hvGfx *hvg, boolean isDmel,$/;"	f
hCytoBandDbIsDmel	hg/inc/hCytoBand.h	11;"	d
hCytoBandDrawAt	hg/lib/hCytoBand.c	/^void hCytoBandDrawAt(struct cytoBand *band, struct hvGfx *hvg,$/;"	f
hCytoBandDrawCentromere	hg/lib/hCytoBand.c	/^void hCytoBandDrawCentromere(struct hvGfx *hvg, int x, int y, $/;"	f
hCytoBandName	hg/lib/hCytoBand.c	/^char *hCytoBandName(struct cytoBand *band, boolean isDmel)$/;"	f
hDbDb	hg/lib/hdb.c	/^struct dbDb *hDbDb(char *database)$/;"	f
hDbDbAndArchiveHash	hg/lib/hdb.c	/^struct hash *hDbDbAndArchiveHash()$/;"	f
hDbDbCmpOrderKey	hg/lib/hdb.c	/^int hDbDbCmpOrderKey(const void *va, const void *vb)$/;"	f
hDbDbField	hg/lib/hdb.c	/^char *hDbDbField(char *database, char *field)$/;"	f
hDbDbHash	hg/lib/hdb.c	/^struct hash *hDbDbHash()$/;"	f
hDbDbList	hg/lib/hdb.c	/^struct dbDb *hDbDbList()$/;"	f
hDbDbListDeadOrAlive	hg/lib/hdb.c	/^static struct dbDb *hDbDbListDeadOrAlive()$/;"	f	file:
hDbDbListMaybeCheck	hg/lib/hdb.c	/^struct dbDb *hDbDbListMaybeCheck(boolean doCheck)$/;"	f
hDbDbNibPath	hg/lib/hdb.c	/^char *hDbDbNibPath(char *database)$/;"	f
hDbDbOptionalField	hg/lib/hdb.c	/^char *hDbDbOptionalField(char *database, char *field)$/;"	f
hDbExists	hg/lib/hdb.c	/^boolean hDbExists(char *database)$/;"	f
hDbForSciName	hg/lib/hdb.c	/^char *hDbForSciName(char *sciName)$/;"	f
hDbForTaxon	hg/lib/hdb.c	/^char *hDbForTaxon(struct sqlConnection *conn, int taxon)$/;"	f
hDbFromFreeze	hg/lib/hdb.c	/^char *hDbFromFreeze(char *freeze)$/;"	f
hDbIsActive	hg/lib/hdb.c	/^boolean hDbIsActive(char *database)$/;"	f
hDbList	hg/lib/hdb.c	/^struct slName *hDbList()$/;"	f
hDefaultChrom	hg/lib/hdb.c	/^char *hDefaultChrom(char *db)$/;"	f
hDefaultDb	hg/lib/hdb.c	/^char *hDefaultDb()$/;"	f
hDefaultDbForGenome	hg/lib/hdb.c	/^char *hDefaultDbForGenome(char *genome)$/;"	f
hDefaultGenomeForClade	hg/lib/hdb.c	/^char *hDefaultGenomeForClade(char *clade)$/;"	f
hDefaultPos	hg/lib/hdb.c	/^char *hDefaultPos(char *database)$/;"	f
hDisconnectArchiveCentral	hg/lib/hdb.c	/^void hDisconnectArchiveCentral(struct sqlConnection **pConn)$/;"	f
hDisconnectCart	hg/lib/hdb.c	/^void hDisconnectCart(struct sqlConnection **pConn)$/;"	f
hDisconnectCentral	hg/lib/hdb.c	/^void hDisconnectCentral(struct sqlConnection **pConn)$/;"	f
hDnaFromSeq	hg/lib/hdb.c	/^struct dnaSeq *hDnaFromSeq(char *db, char *seqName, int start, int end, enum dnaCase dnaCase)$/;"	f
hDnaSeqGet	hg/lib/hdb.c	/^struct dnaSeq *hDnaSeqGet(char *db, char *acc, char *seqTbl, char *extFileTbl)$/;"	f
hDnaSeqMustGet	hg/lib/hdb.c	/^struct dnaSeq *hDnaSeqMustGet(char *db, char *acc, char *seqTbl, char *extFileTbl)$/;"	f
hDocumentRoot	hg/lib/hui.c	/^char *hDocumentRoot()$/;"	f
hDoubleVar	hg/lib/hPrint.c	/^void hDoubleVar(char *varName, double initialVal, int maxDigits)$/;"	f
hDownloadsServer	hg/lib/hui.c	/^char *hDownloadsServer()$/;"	f
hDropList	hg/lib/hPrint.c	/^void hDropList(char *name, char *menu[], int menuSize, char *checked)$/;"	f
hDropListClass	hg/lib/hPrint.c	/^void hDropListClass(char *name, char *menu[], int menuSize, char *checked,$/;"	f
hDropListClassWithStyle	hg/lib/hPrint.c	/^void hDropListClassWithStyle(char *name, char *menu[], int menuSize, $/;"	f
hDumpStackAbortHandler	hg/lib/hCommon.c	/^static void hDumpStackAbortHandler()$/;"	f	file:
hDumpStackDisallow	hg/lib/hCommon.c	/^void hDumpStackDisallow(void)$/;"	f
hDumpStackEnabled	hg/lib/hCommon.c	/^boolean hDumpStackEnabled(void)$/;"	f
hDumpStackPopAbortHandler	hg/lib/hCommon.c	/^void hDumpStackPopAbortHandler(void)$/;"	f
hDumpStackPushAbortHandler	hg/lib/hCommon.c	/^void hDumpStackPushAbortHandler(void)$/;"	f
hEnd	inc/cda.h	/^    int hStart, hEnd;           \/* Start and end position on chromosome. *\/$/;"	m	struct:cdaBlock
hEnd	inc/fuzzyFind.h	/^    char *hStart, *hEnd;          \/* Haystack start and end. *\/$/;"	m	struct:ffAli
hEnd	jkOwnLib/fuzzyFind.c	/^    DNA *hStart, *hEnd, *nStart, *nEnd;$/;"	m	struct:protoGene	file:
hExtFileName	hg/lib/hdb.c	/^char *hExtFileName(char *db, char *extFileTable, unsigned extFileId)$/;"	f
hExtFileNameC	hg/lib/hdb.c	/^char *hExtFileNameC(struct sqlConnection *conn, char *extFileTable, unsigned extFileId)$/;"	f
hExtSeq	hg/lib/hdb.c	/^struct dnaSeq *hExtSeq(char *db, char *acc)$/;"	f
hExtSeqPart	hg/lib/hdb.c	/^struct dnaSeq *hExtSeqPart(char *db, char *acc, int start, int end)$/;"	f
hExtendedChromQuery	hg/lib/hdb.c	/^struct sqlResult *hExtendedChromQuery($/;"	f
hExtendedRangeQuery	hg/lib/hdb.c	/^struct sqlResult *hExtendedRangeQuery($/;"	f
hFetchSeq	hg/lib/hdb.c	/^struct dnaSeq *hFetchSeq(char *fileName, char *seqName, int start, int end)$/;"	f
hFetchSeqMixed	hg/lib/hdb.c	/^struct dnaSeq *hFetchSeqMixed(char *fileName, char *seqName, int start, int end)$/;"	f
hFieldHasIndex	hg/lib/hdb.c	/^boolean hFieldHasIndex(char *db, char *table, char *field)$/;"	f
hFieldIndex	hg/lib/hdb.c	/^int hFieldIndex(char *db, char *table, char *field)$/;"	f
hFileContentsOrWarning	hg/lib/hui.c	/^char *hFileContentsOrWarning(char *file)$/;"	f
hFindBed12FieldsAndBin	hg/lib/hdb.c	/^boolean hFindBed12FieldsAndBin(char *db, char *table,$/;"	f
hFindBed12FieldsAndBinWithConn	hg/lib/hdb.c	/^static boolean hFindBed12FieldsAndBinWithConn(struct sqlConnection *conn, char *table,$/;"	f	file:
hFindBin	hg/lib/hdb.c	/^int hFindBin(int start, int end)$/;"	f
hFindBlatServer	hg/lib/hdb.c	/^struct blatServerTable *hFindBlatServer(char *db, boolean isTrans)$/;"	f
hFindChromStartEndFields	hg/lib/hdb.c	/^boolean hFindChromStartEndFields(char *db, char *table,$/;"	f
hFindChromStartEndFieldsWithConn	hg/lib/hdb.c	/^boolean hFindChromStartEndFieldsWithConn(struct sqlConnection *conn, char *db, char *table,$/;"	f
hFindFieldsAndBin	hg/lib/hdb.c	/^boolean hFindFieldsAndBin(char *db, char *table,$/;"	f
hFindFieldsAndBinWithConn	hg/lib/hdb.c	/^boolean hFindFieldsAndBinWithConn(struct sqlConnection *conn, char *db, char *table,$/;"	f
hFindSplitTable	hg/lib/hdb.c	/^boolean hFindSplitTable(char *db, char *chrom, char *rootName,$/;"	f
hFindTableInfo	hg/lib/hdb.c	/^struct hTableInfo *hFindTableInfo(char *db, char *chrom, char *rootName)$/;"	f
hFindTableInfoWithConn	hg/lib/hdb.c	/^struct hTableInfo *hFindTableInfoWithConn(struct sqlConnection *conn, char *chrom, char *rootName)$/;"	f
hFreeConn	hg/lib/hdb.c	/^void hFreeConn(struct sqlConnection **pConn)$/;"	f
hFreezeDate	hg/lib/hdb.c	/^char *hFreezeDate(char *database)$/;"	f
hFreezeDateOpt	hg/lib/hdb.c	/^char *hFreezeDateOpt(char *database)$/;"	f
hFreezeDbConversion	hg/lib/hdb.c	/^static char *hFreezeDbConversion(char *database, char *freeze)$/;"	f	file:
hFreezeFromDb	hg/lib/hdb.c	/^char *hFreezeFromDb(char *database)$/;"	f
hGenBankGetDesc	hg/lib/hdb.c	/^char *hGenBankGetDesc(char *db, char *acc, boolean native)$/;"	f
hGenBankGetMrna	hg/lib/hdb.c	/^struct dnaSeq *hGenBankGetMrna(char *db, char *acc, char *compatTable)$/;"	f
hGenBankGetMrnaC	hg/lib/hdb.c	/^struct dnaSeq *hGenBankGetMrnaC(struct sqlConnection *conn, char *acc, char *compatTable)$/;"	f
hGenBankGetPep	hg/lib/hdb.c	/^aaSeq *hGenBankGetPep(char *db, char *acc, char *compatTable)$/;"	f
hGenBankGetPepC	hg/lib/hdb.c	/^aaSeq *hGenBankGetPepC(struct sqlConnection *conn, char *acc, char *compatTable)$/;"	f
hGenBankHaveSeq	hg/lib/hdb.c	/^boolean hGenBankHaveSeq(char *db, char *acc, char *compatTable)$/;"	f
hGenbankModDate	hg/lib/hdb.c	/^char *hGenbankModDate(char *acc, struct sqlConnection *conn)$/;"	f
hGenome	hg/lib/hdb.c	/^char *hGenome(char *database)$/;"	f
hGenomeOrArchive	hg/lib/hdb.c	/^char *hGenomeOrArchive(char *database)$/;"	f
hGetAxtAlignments	hg/lib/hdb.c	/^struct axtInfo *hGetAxtAlignments(char *db, char *otherDb)$/;"	f
hGetAxtAlignmentsChrom	hg/lib/hdb.c	/^struct axtInfo *hGetAxtAlignmentsChrom(char *db, char *otherDb, char *chrom)$/;"	f
hGetAxtInfoDbs	hg/lib/hdb.c	/^struct dbDb *hGetAxtInfoDbs(char *db)$/;"	f
hGetBedRange	hg/lib/hdb.c	/^struct bed *hGetBedRange(char *db, char *table, char *chrom, int chromStart,$/;"	f
hGetBedRangeCount	hg/lib/hdb.c	/^int hGetBedRangeCount(char *db, char *table, char *chrom, int chromStart,$/;"	f
hGetBlatIndexedDatabases	hg/lib/hdb.c	/^struct dbDb *hGetBlatIndexedDatabases()$/;"	f
hGetChromInfo	hg/lib/hdb.c	/^struct chromInfo *hGetChromInfo(char *db, char *chrom)$/;"	f
hGetCtBedRange	hg/lib/hdb.c	/^struct bed *hGetCtBedRange(char *db, char *browserDb, char *table, char *chrom, int chromStart,$/;"	f
hGetDatabaseRank	hg/lib/hdb.c	/^struct hash *hGetDatabaseRank()$/;"	f
hGetFullBed	hg/lib/hdb.c	/^struct bed *hGetFullBed(char *db, char *table)$/;"	f
hGetIndexedDatabases	hg/lib/hdb.c	/^struct dbDb *hGetIndexedDatabases()$/;"	f
hGetIndexedDatabasesForClade	hg/lib/hdb.c	/^struct dbDb *hGetIndexedDatabasesForClade(char *db)$/;"	f
hGetIndexedDbsMaybeClade	hg/lib/hdb.c	/^static struct dbDb *hGetIndexedDbsMaybeClade(char *theDb)$/;"	f	file:
hGetLiftOverFromDatabases	hg/lib/hdb.c	/^struct dbDb *hGetLiftOverFromDatabases()$/;"	f
hGetLiftOverToDatabases	hg/lib/hdb.c	/^struct dbDb *hGetLiftOverToDatabases(char *fromDb)$/;"	f
hGetMinIndexLength	hg/lib/hdb.c	/^int hGetMinIndexLength(char *db)$/;"	f
hGetParent	hg/lib/hdb.c	/^char *hGetParent(char *db, char *subtrackName)$/;"	f
hGetSeqAndId	hg/lib/hdb.c	/^char* hGetSeqAndId(struct sqlConnection *conn, char *acc, HGID *retId)$/;"	f
hGetTableForTrack	hg/lib/hdb.c	/^char *hGetTableForTrack(char *db, char *track)$/;"	f
hGetTrackForTable	hg/lib/hdb.c	/^char *hGetTrackForTable(char *db, char *table)$/;"	f
hGetTracks	hg/lib/trackTable.c	/^struct trackTable *hGetTracks(char *db)$/;"	f
hGotClade	hg/lib/hdb.c	/^boolean hGotClade()$/;"	f
hGotCladeConn	hg/lib/hdb.c	/^static boolean hGotCladeConn(struct sqlConnection *conn)$/;"	f	file:
hGrayInRange	hg/lib/hgColors.c	/^int hGrayInRange(int oldVal, int oldMin, int oldMax, int newMax)$/;"	f
hHasField	hg/lib/hdb.c	/^boolean hHasField(char *db, char *table, char *field)$/;"	f
hHelpFile	hg/lib/hui.c	/^char *hHelpFile(char *fileRoot)$/;"	f
hHostHasPrefix	hg/lib/hdb.c	/^boolean hHostHasPrefix(char *prefix)$/;"	f
hHtmlPath	hg/lib/hdb.c	/^char *hHtmlPath(char *database)$/;"	f
hIntVar	hg/lib/hPrint.c	/^void hIntVar(char *varName, int initialVal, int maxDigits)$/;"	f
hIsBetaHost	hg/lib/hdb.c	/^boolean hIsBetaHost()$/;"	f
hIsBigBed	hg/lib/hdb.c	/^boolean hIsBigBed(char *database, char *table, struct trackDb *parent, struct customTrack *(*ctLookupName)(char *table))$/;"	f
hIsBinned	hg/lib/hdb.c	/^boolean hIsBinned(char *db, char *table)$/;"	f
hIsBlatIndexedDatabase	hg/lib/hdb.c	/^boolean hIsBlatIndexedDatabase(char *db)$/;"	f
hIsCgbServer	hg/lib/hCommon.c	/^boolean hIsCgbServer()$/;"	f
hIsGisaidServer	hg/lib/hCommon.c	/^boolean hIsGisaidServer()$/;"	f
hIsGsidServer	hg/lib/hCommon.c	/^boolean hIsGsidServer()$/;"	f
hIsPreviewHost	hg/lib/hdb.c	/^boolean hIsPreviewHost()$/;"	f
hIsPrivateHost	hg/lib/hdb.c	/^boolean hIsPrivateHost()$/;"	f
hLiftOverFromDbs	hg/lib/hdb.c	/^struct slName *hLiftOverFromDbs()$/;"	f
hLiftOverFromOrgs	hg/lib/hdb.c	/^struct slName *hLiftOverFromOrgs()$/;"	f
hLiftOverOrgs	hg/lib/hdb.c	/^struct slName *hLiftOverOrgs(boolean from, char *fromDb)$/;"	f
hLiftOverToDbs	hg/lib/hdb.c	/^struct slName *hLiftOverToDbs(char *fromDb)$/;"	f
hLiftOverToOrgs	hg/lib/hdb.c	/^struct slName *hLiftOverToOrgs(char *fromDb)$/;"	f
hLineStart	inc/seqOut.h	/^    int hLineStart;$/;"	m	struct:baf
hLoadChrom	hg/lib/hdb.c	/^struct dnaSeq *hLoadChrom(char *db, char *chromName)$/;"	f
hLoadGrps	hg/lib/hdb.c	/^struct grp* hLoadGrps(char *db)$/;"	f
hMakeGrayShades	hg/lib/hgColors.c	/^void hMakeGrayShades(struct hvGfx *hvg, Color *shades, int maxShade)$/;"	f
hMaybeTrackInfo	hg/lib/hdb.c	/^struct trackDb *hMaybeTrackInfo(struct sqlConnection *conn, char *trackName)$/;"	f
hNibForChrom	hg/lib/hdb.c	/^void hNibForChrom(char *db, char *chromName, char retNibName[HDB_MAX_PATH_STRING])$/;"	f
hNibForChromFromPath	hg/lib/hdb.c	/^void hNibForChromFromPath(char *nibPath, char *db, char *chromName,$/;"	f
hNumOff	inc/seqOut.h	/^    int nNumOff, hNumOff;$/;"	m	struct:baf
hOffsetPastBin	hg/lib/hdb.c	/^int hOffsetPastBin(char *db, char *chrom, char *table)$/;"	f
hOnClickButton	hg/lib/hPrint.c	/^void hOnClickButton(char *command, char *label)$/;"	f
hOrderedRangeQuery	hg/lib/hdb.c	/^struct sqlResult *hOrderedRangeQuery(struct sqlConnection *conn,$/;"	f
hOrganism	hg/lib/hdb.c	/^char *hOrganism(char *database)$/;"	f
hOrganismID	hg/lib/hdb.c	/^int hOrganismID(char *database)$/;"	f
hParseTableName	hg/lib/hdb.c	/^void hParseTableName(char *db, char *table, char trackName[HDB_MAX_TABLE_STRING],$/;"	f
hPdbFromGdb	hg/lib/hdb.c	/^char *hPdbFromGdb(char *genomeDb)$/;"	f
hPepSeq	hg/lib/hdb.c	/^aaSeq *hPepSeq(char *db, char *acc)$/;"	f
hPepSeqGet	hg/lib/hdb.c	/^aaSeq *hPepSeqGet(char *db, char *acc, char *seqTbl, char *extFileTbl)$/;"	f
hPepSeqMustGet	hg/lib/hdb.c	/^aaSeq *hPepSeqMustGet(char *db, char *acc, char *seqTbl, char *extFileTbl)$/;"	f
hPreviousAssembly	hg/lib/hdb.c	/^char *hPreviousAssembly(char *database)$/;"	f
hPrintAbbreviationTable	hg/lib/hui.c	/^void hPrintAbbreviationTable(struct sqlConnection *conn, char *sourceTable, char *label)$/;"	f
hPrintComment	hg/lib/hPrint.c	/^void hPrintComment(char *format, ...)$/;"	f
hPrintDisable	hg/lib/hPrint.c	/^void hPrintDisable()$/;"	f
hPrintEnable	hg/lib/hPrint.c	/^void hPrintEnable()$/;"	f
hPrintEncodedNonBreak	hg/lib/hPrint.c	/^void hPrintEncodedNonBreak(char *s)$/;"	f
hPrintNonBreak	hg/lib/hPrint.c	/^void hPrintNonBreak(char *s)$/;"	f
hPrintPennantIcon	hg/lib/hui.c	/^boolean hPrintPennantIcon(struct trackDb *tdb)$/;"	f
hPrintStatus	hg/lib/hPrint.c	/^boolean hPrintStatus()$/;"	f
hPrintf	hg/lib/hPrint.c	/^void hPrintf(char *format, ...)$/;"	f
hPutc	hg/lib/hPrint.c	/^void hPutc(char c)$/;"	f
hPuts	hg/lib/hPrint.c	/^void hPuts(char *string)$/;"	f
hRangeQuery	hg/lib/hdb.c	/^struct sqlResult *hRangeQuery(struct sqlConnection *conn,$/;"	f
hRnaSeq	hg/lib/hdb.c	/^struct dnaSeq *hRnaSeq(char *db, char *acc)$/;"	f
hRnaSeqAndId	hg/lib/hdb.c	/^void hRnaSeqAndId(char *db, char *acc, struct dnaSeq **retSeq, HGID *retId)$/;"	f
hRnaSeqAndIdx	hg/lib/hdb.c	/^int hRnaSeqAndIdx(char *acc, struct dnaSeq **retSeq, HGID *retId, struct sqlConnection *conn)$/;"	f
hSameTrackDbType	hg/lib/hui.c	/^boolean hSameTrackDbType(char *type1, char *type2)$/;"	f
hScaffoldPos	hg/lib/hdb.c	/^boolean hScaffoldPos(char *db, char *chrom, int start, int end,$/;"	f
hScientificName	hg/lib/hdb.c	/^char *hScientificName(char *database)$/;"	f
hSeqForBed	hg/lib/hdb.c	/^struct dnaSeq *hSeqForBed(char *db, struct bed *bed)$/;"	f
hSetTrackDbName	hg/lib/hdb.c	/^void hSetTrackDbName(char *trackDbName)$/;"	f
hSplitTableNames	hg/lib/hdb.c	/^struct slName *hSplitTableNames(char *db, char *rootName)$/;"	f
hStart	inc/cda.h	/^    int hStart, hEnd;           \/* Start and end position on chromosome. *\/$/;"	m	struct:cdaBlock
hStart	inc/fuzzyFind.h	/^    char *hStart, *hEnd;          \/* Haystack start and end. *\/$/;"	m	struct:ffAli
hStart	jkOwnLib/fuzzyFind.c	/^    DNA *hStart, *hEnd, *nStart, *nEnd;$/;"	m	struct:protoGene	file:
hStringFromTv	hg/lib/hui.c	/^char *hStringFromTv(enum trackVisibility vis)$/;"	f
hSym	hg/inc/wabAli.h	/^    char *hSym;	\/* Hidden Markov symbols. *\/$/;"	m	struct:wabAli
hSym	inc/xa.h	/^    char *qSym, *tSym, *hSym;$/;"	m	struct:xaAli
hSym	jkOwnLib/xenbig.c	/^    char *hSym;     \/* "Hidden" state symbols. *\/$/;"	m	struct:contig	file:
hTableEnd	hg/lib/hCommon.c	/^void hTableEnd()$/;"	f
hTableExists	hg/lib/hdb.c	/^boolean hTableExists(char *db, char *table)$/;"	f
hTableForTrack	hg/lib/hdb.c	/^char *hTableForTrack(char *db, char *trackName)$/;"	f
hTableInfo	hg/inc/hdb.h	/^struct hTableInfo$/;"	s
hTableInfoBedFieldCount	hg/lib/hdb.c	/^int hTableInfoBedFieldCount(struct hTableInfo *hti)$/;"	f
hTableOrSplitExists	hg/lib/hdb.c	/^boolean hTableOrSplitExists(char *db, char *track)$/;"	f
hTableStart	hg/lib/hCommon.c	/^void hTableStart()$/;"	f
hTdbGetTrackSettingsHash	hg/lib/hdb.c	/^struct hash *hTdbGetTrackSettingsHash(char *db)$/;"	f
hTextVar	hg/lib/hPrint.c	/^void hTextVar(char *varName, char *initialVal, int charSize)$/;"	f
hTrackCanPack	hg/lib/hdb.c	/^boolean hTrackCanPack(char *db, char *trackName)$/;"	f
hTrackDb	hg/lib/hdb.c	/^struct trackDb *hTrackDb(char *db)$/;"	f
hTrackDbForTrack	hg/inc/hdb.h	491;"	d
hTrackDbForTrackAndAncestors	hg/lib/hdb.c	/^struct trackDb *hTrackDbForTrackAndAncestors(char *db, char *track)$/;"	f
hTrackDbList	hg/lib/hdb.c	/^struct slName *hTrackDbList()$/;"	f
hTrackDbPath	hg/lib/hdb.c	/^static char *hTrackDbPath()$/;"	f	file:
hTrackInfo	hg/lib/hdb.c	/^struct trackDb *hTrackInfo(struct sqlConnection *conn, char *trackName)$/;"	f
hTrackOnChrom	hg/lib/hdb.c	/^boolean hTrackOnChrom(struct trackDb *tdb, char *chrom)$/;"	f
hTrackOpenVis	hg/lib/hdb.c	/^char *hTrackOpenVis(char *db, char *trackName)$/;"	f
hTrackTablesOfType	hg/lib/hdb.c	/^struct slName *hTrackTablesOfType(struct sqlConnection *conn, char *type)$/;"	f
hTvDropDown	hg/inc/hui.h	207;"	d
hTvDropDownClass	hg/inc/hui.h	203;"	d
hTvDropDownClassVisOnly	hg/inc/hui.h	198;"	d
hTvDropDownClassVisOnlyAndExtra	hg/lib/hui.c	/^void hTvDropDownClassVisOnlyAndExtra(char *varName, enum trackVisibility vis,$/;"	f
hTvDropDownClassWithJavascript	hg/lib/hui.c	/^void hTvDropDownClassWithJavascript(char *varName, enum trackVisibility vis, boolean canPack, char *class,char * javascript)$/;"	f
hTvDropDownWithJavascript	hg/inc/hui.h	205;"	d
hTvFromString	hg/lib/hui.c	/^enum trackVisibility hTvFromString(char *s)$/;"	f
hTvFromStringNoAbort	hg/lib/hui.c	/^enum trackVisibility hTvFromStringNoAbort(char *s)$/;"	f
hTvStringShowSameAsFull	hg/lib/hui.c	484;"	d	file:
hTvStrings	hg/lib/hui.c	/^static char *hTvStrings[] =$/;"	v	file:
hUserAbort	hg/lib/hCommon.c	/^void hUserAbort(char *format, ...)$/;"	f
hUserCookie	hg/lib/hui.c	/^char *hUserCookie()$/;"	f
hVaUserAbort	hg/lib/hCommon.c	/^void hVaUserAbort(char *format, va_list args)$/;"	f
hVarSubst	hg/lib/hVarSubst.c	/^char *hVarSubst(char *desc, struct trackDb *tdb, char *database, char *src)$/;"	f
hVarSubstInVar	hg/lib/hVarSubst.c	/^void hVarSubstInVar(char *desc, struct trackDb *tdb, char *database, char **varPtr)$/;"	f
hVarSubstTrackDb	hg/lib/hVarSubst.c	/^void hVarSubstTrackDb(struct trackDb *tdb, char *database)$/;"	f
hVarSubst_h	hg/inc/hVarSubst.h	5;"	d
hWrites	hg/lib/hPrint.c	/^void hWrites(char *string)$/;"	f
hacCmpFunction	inc/hacTree.h	/^typedef int hacCmpFunction(const struct slList *item1, const struct slList *item2,$/;"	t
hacDistanceFunction	inc/hacTree.h	/^typedef double hacDistanceFunction(const struct slList *item1, const struct slList *item2,$/;"	t
hacMergeFunction	inc/hacTree.h	/^typedef struct slList *(hacMergeFunction)(const struct slList *item1, const struct slList *item2,$/;"	t	typeref:struct:hacMergeFunction
hacTree	inc/hacTree.h	/^struct hacTree$/;"	s
hacTreeFromItems	lib/hacTree.c	/^struct hacTree *hacTreeFromItems(const struct slList *itemList, struct lm *localMem,$/;"	f
hackConfigProfiles	hg/lib/hgConfig.c	/^static void hackConfigProfiles()$/;"	f	file:
handler	lib/memalloc.c	/^    struct memHandler *handler;  \/* Memory handler. *\/$/;"	m	struct:memTracker	typeref:struct:memTracker::memHandler	file:
hapIxA	inc/vcf.h	/^    char hapIxA;		\/\/ Index of one haplotype's allele: 0=reference, 1=alt, 2=other alt$/;"	m	struct:vcfGenotype
hapIxB	inc/vcf.h	/^    char hapIxB;		\/\/ Index of other haplotype's allele, or if negative, missing data$/;"	m	struct:vcfGenotype
hapmapAlleleFreq	hg/inc/hapmapAlleleFreq.h	/^struct hapmapAlleleFreq$/;"	s
hapmapAlleleFreqCommaIn	hg/lib/hapmapAlleleFreq.c	/^struct hapmapAlleleFreq *hapmapAlleleFreqCommaIn(char **pS, struct hapmapAlleleFreq *ret)$/;"	f
hapmapAlleleFreqCommaOut	hg/inc/hapmapAlleleFreq.h	68;"	d
hapmapAlleleFreqFree	hg/lib/hapmapAlleleFreq.c	/^void hapmapAlleleFreqFree(struct hapmapAlleleFreq **pEl)$/;"	f
hapmapAlleleFreqFreeList	hg/lib/hapmapAlleleFreq.c	/^void hapmapAlleleFreqFreeList(struct hapmapAlleleFreq **pList)$/;"	f
hapmapAlleleFreqLoad	hg/lib/hapmapAlleleFreq.c	/^struct hapmapAlleleFreq *hapmapAlleleFreqLoad(char **row)$/;"	f
hapmapAlleleFreqLoadAll	hg/lib/hapmapAlleleFreq.c	/^struct hapmapAlleleFreq *hapmapAlleleFreqLoadAll(char *fileName) $/;"	f
hapmapAlleleFreqLoadAllByChar	hg/lib/hapmapAlleleFreq.c	/^struct hapmapAlleleFreq *hapmapAlleleFreqLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapAlleleFreqLoadAllByTab	hg/inc/hapmapAlleleFreq.h	46;"	d
hapmapAlleleFreqOutput	hg/lib/hapmapAlleleFreq.c	/^void hapmapAlleleFreqOutput(struct hapmapAlleleFreq *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapAlleleFreqStaticLoad	hg/lib/hapmapAlleleFreq.c	/^void hapmapAlleleFreqStaticLoad(char **row, struct hapmapAlleleFreq *ret)$/;"	f
hapmapAlleleFreqTabOut	hg/inc/hapmapAlleleFreq.h	65;"	d
hapmapAlleles	hg/inc/hapmapAlleles.h	/^struct hapmapAlleles$/;"	s
hapmapAllelesCombined	hg/inc/hapmapAllelesCombined.h	/^struct hapmapAllelesCombined$/;"	s
hapmapAllelesCombinedCommaIn	hg/lib/hapmapAllelesCombined.c	/^struct hapmapAllelesCombined *hapmapAllelesCombinedCommaIn(char **pS, struct hapmapAllelesCombined *ret)$/;"	f
hapmapAllelesCombinedCommaOut	hg/inc/hapmapAllelesCombined.h	75;"	d
hapmapAllelesCombinedFree	hg/lib/hapmapAllelesCombined.c	/^void hapmapAllelesCombinedFree(struct hapmapAllelesCombined **pEl)$/;"	f
hapmapAllelesCombinedFreeList	hg/lib/hapmapAllelesCombined.c	/^void hapmapAllelesCombinedFreeList(struct hapmapAllelesCombined **pList)$/;"	f
hapmapAllelesCombinedLoad	hg/lib/hapmapAllelesCombined.c	/^struct hapmapAllelesCombined *hapmapAllelesCombinedLoad(char **row)$/;"	f
hapmapAllelesCombinedLoadAll	hg/lib/hapmapAllelesCombined.c	/^struct hapmapAllelesCombined *hapmapAllelesCombinedLoadAll(char *fileName) $/;"	f
hapmapAllelesCombinedLoadAllByChar	hg/lib/hapmapAllelesCombined.c	/^struct hapmapAllelesCombined *hapmapAllelesCombinedLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapAllelesCombinedLoadAllByTab	hg/inc/hapmapAllelesCombined.h	53;"	d
hapmapAllelesCombinedOutput	hg/lib/hapmapAllelesCombined.c	/^void hapmapAllelesCombinedOutput(struct hapmapAllelesCombined *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapAllelesCombinedStaticLoad	hg/lib/hapmapAllelesCombined.c	/^void hapmapAllelesCombinedStaticLoad(char **row, struct hapmapAllelesCombined *ret)$/;"	f
hapmapAllelesCombinedTabOut	hg/inc/hapmapAllelesCombined.h	72;"	d
hapmapAllelesCommaIn	hg/lib/hapmapAlleles.c	/^struct hapmapAlleles *hapmapAllelesCommaIn(char **pS, struct hapmapAlleles *ret)$/;"	f
hapmapAllelesCommaOut	hg/inc/hapmapAlleles.h	66;"	d
hapmapAllelesFree	hg/lib/hapmapAlleles.c	/^void hapmapAllelesFree(struct hapmapAlleles **pEl)$/;"	f
hapmapAllelesFreeList	hg/lib/hapmapAlleles.c	/^void hapmapAllelesFreeList(struct hapmapAlleles **pList)$/;"	f
hapmapAllelesLoad	hg/lib/hapmapAlleles.c	/^struct hapmapAlleles *hapmapAllelesLoad(char **row)$/;"	f
hapmapAllelesLoadAll	hg/lib/hapmapAlleles.c	/^struct hapmapAlleles *hapmapAllelesLoadAll(char *fileName) $/;"	f
hapmapAllelesLoadAllByChar	hg/lib/hapmapAlleles.c	/^struct hapmapAlleles *hapmapAllelesLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapAllelesLoadAllByTab	hg/inc/hapmapAlleles.h	44;"	d
hapmapAllelesOrtho	hg/inc/hapmapAllelesOrtho.h	/^struct hapmapAllelesOrtho$/;"	s
hapmapAllelesOrthoCommaIn	hg/lib/hapmapAllelesOrtho.c	/^struct hapmapAllelesOrtho *hapmapAllelesOrthoCommaIn(char **pS, struct hapmapAllelesOrtho *ret)$/;"	f
hapmapAllelesOrthoCommaOut	hg/inc/hapmapAllelesOrtho.h	67;"	d
hapmapAllelesOrthoFree	hg/lib/hapmapAllelesOrtho.c	/^void hapmapAllelesOrthoFree(struct hapmapAllelesOrtho **pEl)$/;"	f
hapmapAllelesOrthoFreeList	hg/lib/hapmapAllelesOrtho.c	/^void hapmapAllelesOrthoFreeList(struct hapmapAllelesOrtho **pList)$/;"	f
hapmapAllelesOrthoLoad	hg/lib/hapmapAllelesOrtho.c	/^struct hapmapAllelesOrtho *hapmapAllelesOrthoLoad(char **row)$/;"	f
hapmapAllelesOrthoLoadAll	hg/lib/hapmapAllelesOrtho.c	/^struct hapmapAllelesOrtho *hapmapAllelesOrthoLoadAll(char *fileName) $/;"	f
hapmapAllelesOrthoLoadAllByChar	hg/lib/hapmapAllelesOrtho.c	/^struct hapmapAllelesOrtho *hapmapAllelesOrthoLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapAllelesOrthoLoadAllByTab	hg/inc/hapmapAllelesOrtho.h	45;"	d
hapmapAllelesOrthoOutput	hg/lib/hapmapAllelesOrtho.c	/^void hapmapAllelesOrthoOutput(struct hapmapAllelesOrtho *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapAllelesOrthoStaticLoad	hg/lib/hapmapAllelesOrtho.c	/^void hapmapAllelesOrthoStaticLoad(char **row, struct hapmapAllelesOrtho *ret)$/;"	f
hapmapAllelesOrthoTabOut	hg/inc/hapmapAllelesOrtho.h	64;"	d
hapmapAllelesOutput	hg/lib/hapmapAlleles.c	/^void hapmapAllelesOutput(struct hapmapAlleles *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapAllelesStaticLoad	hg/lib/hapmapAlleles.c	/^void hapmapAllelesStaticLoad(char **row, struct hapmapAlleles *ret)$/;"	f
hapmapAllelesSummary	hg/inc/hapmapAllelesSummary.h	/^struct hapmapAllelesSummary$/;"	s
hapmapAllelesSummaryCommaIn	hg/lib/hapmapAllelesSummary.c	/^struct hapmapAllelesSummary *hapmapAllelesSummaryCommaIn(char **pS, struct hapmapAllelesSummary *ret)$/;"	f
hapmapAllelesSummaryCommaOut	hg/inc/hapmapAllelesSummary.h	81;"	d
hapmapAllelesSummaryFree	hg/lib/hapmapAllelesSummary.c	/^void hapmapAllelesSummaryFree(struct hapmapAllelesSummary **pEl)$/;"	f
hapmapAllelesSummaryFreeList	hg/lib/hapmapAllelesSummary.c	/^void hapmapAllelesSummaryFreeList(struct hapmapAllelesSummary **pList)$/;"	f
hapmapAllelesSummaryLoad	hg/lib/hapmapAllelesSummary.c	/^struct hapmapAllelesSummary *hapmapAllelesSummaryLoad(char **row)$/;"	f
hapmapAllelesSummaryLoadAll	hg/lib/hapmapAllelesSummary.c	/^struct hapmapAllelesSummary *hapmapAllelesSummaryLoadAll(char *fileName) $/;"	f
hapmapAllelesSummaryLoadAllByChar	hg/lib/hapmapAllelesSummary.c	/^struct hapmapAllelesSummary *hapmapAllelesSummaryLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapAllelesSummaryLoadAllByTab	hg/inc/hapmapAllelesSummary.h	59;"	d
hapmapAllelesSummaryOutput	hg/lib/hapmapAllelesSummary.c	/^void hapmapAllelesSummaryOutput(struct hapmapAllelesSummary *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapAllelesSummaryStaticLoad	hg/lib/hapmapAllelesSummary.c	/^void hapmapAllelesSummaryStaticLoad(char **row, struct hapmapAllelesSummary *ret)$/;"	f
hapmapAllelesSummaryTabOut	hg/inc/hapmapAllelesSummary.h	78;"	d
hapmapAllelesTabOut	hg/inc/hapmapAlleles.h	63;"	d
hapmapLd	hg/inc/hapmapLd.h	/^struct hapmapLd$/;"	s
hapmapLdCommaIn	hg/lib/hapmapLd.c	/^struct hapmapLd *hapmapLdCommaIn(char **pS, struct hapmapLd *ret)$/;"	f
hapmapLdCommaOut	hg/inc/hapmapLd.h	91;"	d
hapmapLdFree	hg/lib/hapmapLd.c	/^void hapmapLdFree(struct hapmapLd **pEl)$/;"	f
hapmapLdFreeList	hg/lib/hapmapLd.c	/^void hapmapLdFreeList(struct hapmapLd **pList)$/;"	f
hapmapLdLoad	hg/lib/hapmapLd.c	/^struct hapmapLd *hapmapLdLoad(char **row)$/;"	f
hapmapLdLoadAll	hg/lib/hapmapLd.c	/^struct hapmapLd *hapmapLdLoadAll(char *fileName) $/;"	f
hapmapLdLoadAllByChar	hg/lib/hapmapLd.c	/^struct hapmapLd *hapmapLdLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapLdLoadAllByTab	hg/inc/hapmapLd.h	44;"	d
hapmapLdLoadByQuery	hg/lib/hapmapLd.c	/^struct hapmapLd *hapmapLdLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
hapmapLdOutput	hg/lib/hapmapLd.c	/^void hapmapLdOutput(struct hapmapLd *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapLdSaveToDb	hg/lib/hapmapLd.c	/^void hapmapLdSaveToDb(struct sqlConnection *conn, struct hapmapLd *el, char *tableName, int updateSize)$/;"	f
hapmapLdSaveToDbEscaped	hg/lib/hapmapLd.c	/^void hapmapLdSaveToDbEscaped(struct sqlConnection *conn, struct hapmapLd *el, char *tableName, int updateSize)$/;"	f
hapmapLdStaticLoad	hg/lib/hapmapLd.c	/^void hapmapLdStaticLoad(char **row, struct hapmapLd *ret)$/;"	f
hapmapLdTabOut	hg/inc/hapmapLd.h	88;"	d
hapmapOrthoSpecies	hg/lib/hapmapSnps.c	/^char *hapmapOrthoSpecies[] = {"Chimp", "Macaque", NULL};$/;"	v
hapmapPhaseIIIPops	hg/inc/hapmapSnps.h	/^char *hapmapPhaseIIIPops[HAP_PHASEIII_POPCOUNT];$/;"	v
hapmapPhaseIIIPops	hg/lib/hapmapSnps.c	/^char *hapmapPhaseIIIPops[] =$/;"	v
hapmapPhaseIIISummary	hg/inc/hapmapPhaseIIISummary.h	/^struct hapmapPhaseIIISummary$/;"	s
hapmapPhaseIIISummaryCommaIn	hg/lib/hapmapPhaseIIISummary.c	/^struct hapmapPhaseIIISummary *hapmapPhaseIIISummaryCommaIn(char **pS, struct hapmapPhaseIIISummary *ret)$/;"	f
hapmapPhaseIIISummaryCommaOut	hg/inc/hapmapPhaseIIISummary.h	68;"	d
hapmapPhaseIIISummaryFree	hg/lib/hapmapPhaseIIISummary.c	/^void hapmapPhaseIIISummaryFree(struct hapmapPhaseIIISummary **pEl)$/;"	f
hapmapPhaseIIISummaryFreeList	hg/lib/hapmapPhaseIIISummary.c	/^void hapmapPhaseIIISummaryFreeList(struct hapmapPhaseIIISummary **pList)$/;"	f
hapmapPhaseIIISummaryLoad	hg/lib/hapmapPhaseIIISummary.c	/^struct hapmapPhaseIIISummary *hapmapPhaseIIISummaryLoad(char **row)$/;"	f
hapmapPhaseIIISummaryLoadAll	hg/lib/hapmapPhaseIIISummary.c	/^struct hapmapPhaseIIISummary *hapmapPhaseIIISummaryLoadAll(char *fileName) $/;"	f
hapmapPhaseIIISummaryLoadAllByChar	hg/lib/hapmapPhaseIIISummary.c	/^struct hapmapPhaseIIISummary *hapmapPhaseIIISummaryLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapPhaseIIISummaryLoadAllByTab	hg/inc/hapmapPhaseIIISummary.h	46;"	d
hapmapPhaseIIISummaryOutput	hg/lib/hapmapPhaseIIISummary.c	/^void hapmapPhaseIIISummaryOutput(struct hapmapPhaseIIISummary *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapPhaseIIISummaryTabOut	hg/inc/hapmapPhaseIIISummary.h	65;"	d
hapmapPhaseIIPops	hg/inc/hapmapSnps.h	/^char *hapmapPhaseIIPops[HAP_PHASEII_POPCOUNT];$/;"	v
hapmapPhaseIIPops	hg/lib/hapmapSnps.c	/^char *hapmapPhaseIIPops[] = { "CEU", "CHB", "JPT", "YRI" };$/;"	v
hapmapPrimateAlleles	hg/inc/hapmapPrimateAlleles.h	/^struct hapmapPrimateAlleles$/;"	s
hapmapPrimateAllelesCommaIn	hg/lib/hapmapPrimateAlleles.c	/^struct hapmapPrimateAlleles *hapmapPrimateAllelesCommaIn(char **pS, struct hapmapPrimateAlleles *ret)$/;"	f
hapmapPrimateAllelesCommaOut	hg/inc/hapmapPrimateAlleles.h	101;"	d
hapmapPrimateAllelesFree	hg/lib/hapmapPrimateAlleles.c	/^void hapmapPrimateAllelesFree(struct hapmapPrimateAlleles **pEl)$/;"	f
hapmapPrimateAllelesFreeList	hg/lib/hapmapPrimateAlleles.c	/^void hapmapPrimateAllelesFreeList(struct hapmapPrimateAlleles **pList)$/;"	f
hapmapPrimateAllelesLoad	hg/lib/hapmapPrimateAlleles.c	/^struct hapmapPrimateAlleles *hapmapPrimateAllelesLoad(char **row)$/;"	f
hapmapPrimateAllelesLoadAll	hg/lib/hapmapPrimateAlleles.c	/^struct hapmapPrimateAlleles *hapmapPrimateAllelesLoadAll(char *fileName) $/;"	f
hapmapPrimateAllelesLoadAllByChar	hg/lib/hapmapPrimateAlleles.c	/^struct hapmapPrimateAlleles *hapmapPrimateAllelesLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapPrimateAllelesLoadAllByTab	hg/inc/hapmapPrimateAlleles.h	54;"	d
hapmapPrimateAllelesLoadByQuery	hg/lib/hapmapPrimateAlleles.c	/^struct hapmapPrimateAlleles *hapmapPrimateAllelesLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
hapmapPrimateAllelesOutput	hg/lib/hapmapPrimateAlleles.c	/^void hapmapPrimateAllelesOutput(struct hapmapPrimateAlleles *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapPrimateAllelesSaveToDb	hg/lib/hapmapPrimateAlleles.c	/^void hapmapPrimateAllelesSaveToDb(struct sqlConnection *conn, struct hapmapPrimateAlleles *el, char *tableName, int updateSize)$/;"	f
hapmapPrimateAllelesSaveToDbEscaped	hg/lib/hapmapPrimateAlleles.c	/^void hapmapPrimateAllelesSaveToDbEscaped(struct sqlConnection *conn, struct hapmapPrimateAlleles *el, char *tableName, int updateSize)$/;"	f
hapmapPrimateAllelesStaticLoad	hg/lib/hapmapPrimateAlleles.c	/^void hapmapPrimateAllelesStaticLoad(char **row, struct hapmapPrimateAlleles *ret)$/;"	f
hapmapPrimateAllelesTabOut	hg/inc/hapmapPrimateAlleles.h	98;"	d
hapmapSnps	hg/inc/hapmapSnps.h	/^struct hapmapSnps$/;"	s
hapmapSnpsCombined	hg/inc/hapmapSnpsCombined.h	/^struct hapmapSnpsCombined$/;"	s
hapmapSnpsCombinedCommaIn	hg/lib/hapmapSnpsCombined.c	/^struct hapmapSnpsCombined *hapmapSnpsCombinedCommaIn(char **pS, struct hapmapSnpsCombined *ret)$/;"	f
hapmapSnpsCombinedCommaOut	hg/inc/hapmapSnpsCombined.h	75;"	d
hapmapSnpsCombinedFree	hg/lib/hapmapSnpsCombined.c	/^void hapmapSnpsCombinedFree(struct hapmapSnpsCombined **pEl)$/;"	f
hapmapSnpsCombinedFreeList	hg/lib/hapmapSnpsCombined.c	/^void hapmapSnpsCombinedFreeList(struct hapmapSnpsCombined **pList)$/;"	f
hapmapSnpsCombinedLoad	hg/lib/hapmapSnpsCombined.c	/^struct hapmapSnpsCombined *hapmapSnpsCombinedLoad(char **row)$/;"	f
hapmapSnpsCombinedLoadAll	hg/lib/hapmapSnpsCombined.c	/^struct hapmapSnpsCombined *hapmapSnpsCombinedLoadAll(char *fileName) $/;"	f
hapmapSnpsCombinedLoadAllByChar	hg/lib/hapmapSnpsCombined.c	/^struct hapmapSnpsCombined *hapmapSnpsCombinedLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapSnpsCombinedLoadAllByTab	hg/inc/hapmapSnpsCombined.h	53;"	d
hapmapSnpsCombinedOutput	hg/lib/hapmapSnpsCombined.c	/^void hapmapSnpsCombinedOutput(struct hapmapSnpsCombined *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapSnpsCombinedStaticLoad	hg/lib/hapmapSnpsCombined.c	/^void hapmapSnpsCombinedStaticLoad(char **row, struct hapmapSnpsCombined *ret)$/;"	f
hapmapSnpsCombinedTabOut	hg/inc/hapmapSnpsCombined.h	72;"	d
hapmapSnpsCommaIn	hg/lib/hapmapSnps.c	/^struct hapmapSnps *hapmapSnpsCommaIn(char **pS, struct hapmapSnps *ret)$/;"	f
hapmapSnpsCommaOut	hg/inc/hapmapSnps.h	66;"	d
hapmapSnpsFree	hg/lib/hapmapSnps.c	/^void hapmapSnpsFree(struct hapmapSnps **pEl)$/;"	f
hapmapSnpsFreeList	hg/lib/hapmapSnps.c	/^void hapmapSnpsFreeList(struct hapmapSnps **pList)$/;"	f
hapmapSnpsLoad	hg/lib/hapmapSnps.c	/^struct hapmapSnps *hapmapSnpsLoad(char **row)$/;"	f
hapmapSnpsLoadAll	hg/lib/hapmapSnps.c	/^struct hapmapSnps *hapmapSnpsLoadAll(char *fileName) $/;"	f
hapmapSnpsLoadAllByChar	hg/lib/hapmapSnps.c	/^struct hapmapSnps *hapmapSnpsLoadAllByChar(char *fileName, char chopper) $/;"	f
hapmapSnpsLoadAllByTab	hg/inc/hapmapSnps.h	44;"	d
hapmapSnpsOutput	hg/lib/hapmapSnps.c	/^void hapmapSnpsOutput(struct hapmapSnps *el, FILE *f, char sep, char lastSep) $/;"	f
hapmapSnpsStaticLoad	hg/lib/hapmapSnps.c	/^void hapmapSnpsStaticLoad(char **row, struct hapmapSnps *ret)$/;"	f
hapmapSnpsTabOut	hg/inc/hapmapSnps.h	63;"	d
hardCount	inc/qa.h	/^    int hardCount;	\/* Hard error count. *\/$/;"	m	struct:qaStatistics
hardEnd	inc/hgap.h	/^    bool hardEnd;         \/* End position known *\/$/;"	m	struct:hgAlignment
hardEnd	inc/hgap.h	/^    bool hardEnd;         \/* End position known *\/$/;"	m	struct:hgBoundedHit
hardError	inc/qa.h	/^    boolean hardError;	\/* Crash of some sort. *\/$/;"	m	struct:qaStatus
hardRefineSplice	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *hardRefineSplice(struct ffAli *left, struct ffAli *right,$/;"	f	file:
hardStart	inc/hgap.h	/^    bool hardStart;       \/* Start position known *\/$/;"	m	struct:hgAlignment
hardStart	inc/hgap.h	/^    bool hardStart;       \/* Start position known *\/$/;"	m	struct:hgBoundedHit
hasBin	hg/inc/hdb.h	/^    boolean hasBin;		\/* True if table starts with field. *\/$/;"	m	struct:hTableInfo
hasBin	hg/lib/annoStreamDb.c	/^    boolean hasBin;			\/\/ 1 if SQL table's first column is bin$/;"	m	struct:annoStreamDb	file:
hasBlocks	hg/inc/hdb.h	/^    boolean hasBlocks;		\/* True if it has count,starts,endsSizes. *\/$/;"	m	struct:hTableInfo
hasCDS	hg/inc/hdb.h	/^    boolean hasCDS;		\/* True if it has cdsStart,cdsEnd fields. *\/$/;"	m	struct:hTableInfo
hasEndFieldIndex	hg/lib/annoStreamDb.c	/^    boolean hasEndFieldIndex;		\/\/ TRUE if index on end field (can mess up sorting)$/;"	m	struct:annoStreamDb	file:
hasHardLock	hg/lib/jksql.c	/^    boolean hasHardLock;	    \/* TRUE if table has a non-advisory lock. *\/$/;"	m	struct:sqlConnection	file:
hasIntrons	hg/inc/ggMrnaAli.h	/^    int hasIntrons;	\/* TRUE if intron present, FALSE otherwise *\/$/;"	m	struct:ggMrnaAli
hasIntrons	inc/cda.h	/^    UBYTE hasIntrons;$/;"	m	struct:cdaAli
hasIntrons	inc/maDbRep.h	/^    unsigned char hasIntrons;	\/* True if alignment has introns *\/$/;"	m	struct:mrnaAli
hasProtocol	hg/lib/trackHub.c	/^static boolean hasProtocol(char *urlOrPath)$/;"	f	file:
hasRepeat	jkOwnLib/fuzzyFind.c	/^static boolean hasRepeat(DNA *oligo, int oligoLen)$/;"	f	file:
hasWhiteSpace	lib/common.c	/^boolean hasWhiteSpace(char *s)$/;"	f
hash	hg/inc/cart.h	/^   struct hash *hash;	\/* String valued hash. *\/$/;"	m	struct:cart	typeref:struct:cart::hash
hash	hg/inc/hui.h	/^   struct hash *hash;  \/* Hash of id's in table that match pattern *\/$/;"	m	struct:mrnaFilter	typeref:struct:mrnaFilter::hash
hash	inc/genomeRangeTree.h	/^    struct hash *hash;             \/* Hash of rangeTrees keyed by chromosome\/scaffold name. *\/$/;"	m	struct:genomeRangeTree	typeref:struct:genomeRangeTree::hash
hash	inc/hash.h	/^    struct hash *hash;      \/* hash we are associated with *\/$/;"	m	struct:hashCookie	typeref:struct:hashCookie::hash
hash	inc/hash.h	/^struct hash$/;"	s
hash	inc/twoBit.h	/^    struct hash *hash;	\/* Hash of sequences. *\/$/;"	m	struct:twoBitFile	typeref:struct:twoBitFile::hash
hash	jkOwnLib/crudeali.c	/^    struct probeTile **hash;$/;"	m	struct:fastProber	typeref:struct:fastProber::probeTile	file:
hashAdd	lib/hash.c	/^struct hashEl *hashAdd(struct hash *hash, char *name, void *val)$/;"	f
hashAddInt	lib/hash.c	/^struct hashEl *hashAddInt(struct hash *hash, char *name, int val)$/;"	f
hashAddN	lib/hash.c	/^struct hashEl *hashAddN(struct hash *hash, char *name, int nameSize, void *val)$/;"	f
hashAddSaveName	lib/hash.c	/^struct hashEl *hashAddSaveName(struct hash *hash, char *name, void *val, char **saveName)$/;"	f
hashAddUnique	lib/hash.c	/^struct hashEl *hashAddUnique(struct hash *hash, char *name, void *val)$/;"	f
hashCookie	inc/hash.h	/^struct hashCookie$/;"	s
hashCrc	lib/hash.c	/^bits32 hashCrc(char *string)$/;"	f
hashEl	inc/hash.h	/^struct hashEl$/;"	s
hashElCmp	lib/hash.c	/^int hashElCmp(const void *va, const void *vb)$/;"	f
hashElCmpWithEmbeddedNumbers	lib/hash.c	/^int hashElCmpWithEmbeddedNumbers(const void *va, const void *vb)$/;"	f
hashElFindVal	lib/hash.c	/^void *hashElFindVal(struct hashEl *list, char *name)$/;"	f
hashElFree	lib/hash.c	/^void hashElFree(struct hashEl **pEl)$/;"	f
hashElFreeList	lib/hash.c	/^void hashElFreeList(struct hashEl **pList)$/;"	f
hashElListHash	lib/hash.c	/^struct hashEl *hashElListHash(struct hash *hash)$/;"	f
hashEmpty	hg/lib/cart.c	/^static void hashEmpty(struct hash *hash)$/;"	f	file:
hashFindVal	lib/hash.c	/^void *hashFindVal(struct hash *hash, char *name)$/;"	f
hashFindValUpperCase	lib/hash.c	/^void *hashFindValUpperCase(struct hash *hash, char *name)$/;"	f
hashFirst	lib/hash.c	/^struct hashCookie hashFirst(struct hash *hash)$/;"	f
hashFree	inc/hash.h	241;"	d
hashFreeList	lib/hash.c	/^void hashFreeList(struct hash **pList)$/;"	f
hashFreeWithVals	lib/hash.c	/^void hashFreeWithVals(struct hash **pHash, void (freeFunc)())$/;"	f
hashFromSlNameList	lib/hash.c	/^struct hash *hashFromSlNameList(void *list)$/;"	f
hashHisto	lib/hash.c	/^void hashHisto(struct hash *hash, char *fname)$/;"	f
hashIncInt	lib/hash.c	/^void hashIncInt(struct hash *hash, char *name)$/;"	f
hashIntSum	lib/hash.c	/^long long hashIntSum(struct hash *hash)$/;"	f
hashIntVal	lib/hash.c	/^int hashIntVal(struct hash *hash, char *name)$/;"	f
hashIntValDefault	lib/hash.c	/^int hashIntValDefault(struct hash *hash, char *name, int defaultInt)$/;"	f
hashLift	hg/lib/liftUp.c	/^struct hash *hashLift(struct liftSpec *list, boolean revOk)$/;"	f
hashLookup	lib/hash.c	/^struct hashEl *hashLookup(struct hash *hash, char *name)$/;"	f
hashLookupNext	lib/hash.c	/^struct hashEl *hashLookupNext(struct hashEl *hashEl)$/;"	f
hashLookupUpperCase	lib/hash.c	/^struct hashEl *hashLookupUpperCase(struct hash *hash, char *name)$/;"	f
hashMaxSize	inc/hash.h	81;"	d
hashMayRemove	lib/hash.c	/^boolean hashMayRemove(struct hash *hash, char *name)$/;"	f
hashMustFindName	lib/hash.c	/^char *hashMustFindName(struct hash *hash, char *name)$/;"	f
hashMustFindVal	lib/hash.c	/^void *hashMustFindVal(struct hash *hash, char *name)$/;"	f
hashMustRemove	lib/hash.c	/^void hashMustRemove(struct hash *hash, char *name)$/;"	f
hashNameIntFile	lib/obscure.c	/^struct hash *hashNameIntFile(char *fileName)$/;"	f
hashNew	inc/hash.h	230;"	d
hashNewExt	inc/hash.h	226;"	d
hashNext	lib/hash.c	/^struct hashEl* hashNext(struct hashCookie *cookie)$/;"	f
hashNextName	lib/hash.c	/^char *hashNextName(struct hashCookie *cookie)$/;"	f
hashNextVal	lib/hash.c	/^void* hashNextVal(struct hashCookie *cookie)$/;"	f
hashNumEntries	lib/hash.c	/^int hashNumEntries(struct hash *hash)$/;"	f
hashOptionalVal	lib/hash.c	/^void *hashOptionalVal(struct hash *hash, char *name, void *usual)$/;"	f
hashPrintStats	lib/hash.c	/^void hashPrintStats(struct hash *hash, char *label, FILE *fh)$/;"	f
hashRemove	lib/hash.c	/^void *hashRemove(struct hash *hash, char *name)$/;"	f
hashReplace	lib/hash.c	/^struct hashEl *hashReplace(struct hash *hash, char *name, void *val)$/;"	f
hashResize	lib/hash.c	/^void hashResize(struct hash *hash, int powerOfTwoSize)$/;"	f
hashSectionChroms	lib/metaWig.c	/^static struct hash *hashSectionChroms(struct bwgSection *sectionList)$/;"	f	file:
hashStore	lib/hash.c	/^struct hashEl *hashStore(struct hash *hash, char *name)$/;"	f
hashStoreName	lib/hash.c	/^char  *hashStoreName(struct hash *hash, char *name)$/;"	f
hashString	lib/hash.c	/^bits32 hashString(char *string)$/;"	f
hashThisEqThatLine	lib/obscure.c	/^struct hash *hashThisEqThatLine(char *line, int lineIx, boolean firstStartsWithLetter)$/;"	f
hashToRaString	lib/hash.c	/^char *hashToRaString(struct hash *hash)$/;"	f
hashTraverseEls	lib/hash.c	/^void hashTraverseEls(struct hash *hash, void (*func)(struct hashEl *hel))$/;"	f
hashTraverseVals	lib/hash.c	/^void hashTraverseVals(struct hash *hash, void (*func)(void *val))$/;"	f
hashTwoColumnFile	lib/obscure.c	/^struct hash *hashTwoColumnFile(char *fileName)$/;"	f
hashUpdateDynamicVal	hg/lib/cart.c	/^static void hashUpdateDynamicVal(struct hash *hash, char *name, void *val)$/;"	f	file:
hashVal	inc/hash.h	/^    bits32 hashVal;$/;"	m	struct:hashEl
hashVarLine	lib/obscure.c	/^struct hash *hashVarLine(char *line, int lineIx)$/;"	f
hashWordsInFile	lib/obscure.c	/^struct hash *hashWordsInFile(char *fileName, int hashSize)$/;"	f
hasmatch	hg/inc/alignInfo.h	/^    unsigned hasmatch;	\/* If it has match in aligned species *\/$/;"	m	struct:alignInfo
haveCookiesHash	lib/cheapcgi.c	/^static boolean haveCookiesHash = FALSE;$/;"	v	file:
haveMinMax	inc/annoFilter.h	/^    boolean haveMinMax;		\/\/ True if we know the allowable range for numeric thresholds$/;"	m	struct:annoFilter
haveProfile	hg/lib/hgConfig.c	/^static boolean haveProfile(char *profileName)$/;"	f	file:
haveRJIncludeFilter	inc/annoGrator.h	/^    boolean haveRJIncludeFilter;	\/\/ TRUE if some filter has !isExclude && rightJoin;$/;"	m	struct:annoGrator
haveScore	inc/gff3.h	/^    boolean haveScore;  \/* was score specified? *\/$/;"	m	struct:gff3Ann
haveSpecAlready	hg/lib/hgFindSpecCustom.c	/^static boolean haveSpecAlready(struct hgFindSpec *list, struct hgFindSpec *spec)$/;"	f	file:
haveStartStopCodons	hg/lib/genePred.c	/^static boolean haveStartStopCodons(struct gffFile *gff)$/;"	f	file:
haystack	inc/seqOut.h	/^    DNA *needle, *haystack;$/;"	m	struct:baf
hdbCc	hg/lib/hdb.c	/^static struct sqlConnCache *hdbCc = NULL;  \/* cache for primary database connection *\/$/;"	v	typeref:struct:sqlConnCache	file:
hdbTrackDb	hg/lib/hdb.c	/^static char *hdbTrackDb = NULL;$/;"	v	file:
hdr	inc/mime.h	/^    struct hash *hdr;      \/* hash of part headers *\/$/;"	m	struct:mimePart	typeref:struct:mimePart::hash
head	inc/dlist.h	/^    struct dlNode *head;$/;"	m	struct:dlList	typeref:struct:dlList::dlNode
head	inc/shaRes.h	/^    struct shaResNode *head;$/;"	m	struct:shaResList	typeref:struct:shaResList::shaResNode
headNesters	lib/htmlPage.c	/^static char *headNesters[] =$/;"	v	file:
headPolyTSizeLoose	lib/dnautil.c	/^int headPolyTSizeLoose(DNA *dna, int size)$/;"	f
headSize	inc/snof.h	/^    int headSize;$/;"	m	struct:snof
headSize	lib/fof.c	/^    long headSize;               \/* Offset to first index record. *\/$/;"	m	struct:fof	file:
header	inc/htmlPage.h	/^    struct hash *header;		\/* Hash of header lines (cookies, etc.) *\/$/;"	m	struct:htmlPage	typeref:struct:htmlPage::hash
header	inc/itsa.h	/^    struct itsaFileHeader *header;	\/* File header. *\/$/;"	m	struct:itsa	typeref:struct:itsa::itsaFileHeader
header	inc/splix.h	/^    struct splixFileHeader *header;	\/* File header. *\/$/;"	m	struct:splix	typeref:struct:splix::splixFileHeader
header	inc/sufa.h	/^    struct sufaFileHeader *header;	\/* File header. *\/$/;"	m	struct:sufa	typeref:struct:sufa::sufaFileHeader
header	inc/sufx.h	/^    struct sufxFileHeader *header;	\/* File header. *\/$/;"	m	struct:sufx	typeref:struct:sufx::sufxFileHeader
headerBytes	lib/linefile.c	/^static char * headerBytes(char *fileName, int numbytes)$/;"	f	file:
headerLen	hg/inc/genomeRangeTreeFile.h	/^    bits32 headerLen;$/;"	m	struct:genomeRangeTreeFile
headerString	inc/vcf.h	/^    char *headerString;		\/\/ Complete original header including newlines.$/;"	m	struct:vcfFile
heap	inc/quickHeap.h	/^    void **heap;$/;"	m	struct:quickHeap
heapCount	inc/quickHeap.h	/^    int heapCount;$/;"	m	struct:quickHeap
heapMax	inc/quickHeap.h	/^    int heapMax;$/;"	m	struct:quickHeap
height	hg/inc/genoLay.h	/^     int width,height; 	\/* Pixel width and height *\/$/;"	m	struct:genoLayChrom
height	hg/inc/hvGfx.h	/^    int width, height;       \/* Virtual pixel dimensions. *\/$/;"	m	struct:hvGfx
height	inc/memgfx.h	/^    int width, height;$/;"	m	struct:memGfx
height	inc/vGfx.h	/^    int width, height;  \/* Virtual pixel dimensions. *\/$/;"	m	struct:vGfx
helpToNet	hg/lib/chainNetDbLoad.c	/^struct chainNet *helpToNet(struct cnlHelper **pHelp)$/;"	f
hetCount	hg/inc/genotypeFreqs.h	/^    int hetCount;	\/* het-count	0 *\/$/;"	m	struct:genotypeFreqs
hetFreq	hg/inc/genotypeFreqs.h	/^    float hetFreq;	\/* het-freq	0 *\/$/;"	m	struct:genotypeFreqs
hetGt	hg/inc/genotypeFreqs.h	/^    char *hetGt;	\/* het-gt		G\/T *\/$/;"	m	struct:genotypeFreqs
heteroCount	hg/inc/hapmapAlleles.h	/^    unsigned heteroCount;	\/* Count of individuals who are heterozygous *\/$/;"	m	struct:hapmapAlleles
heteroCount	hg/inc/hapmapSnps.h	/^    unsigned heteroCount;	\/* Count of individuals who are heterozygous *\/$/;"	m	struct:hapmapSnps
heteroCountCEU	hg/inc/hapmapAllelesCombined.h	/^    unsigned heteroCountCEU;	\/* Count of CEU individuals who are heterozygous *\/$/;"	m	struct:hapmapAllelesCombined
heteroCountCEU	hg/inc/hapmapSnpsCombined.h	/^    unsigned heteroCountCEU;	\/* Count of CEU individuals who are heterozygous *\/$/;"	m	struct:hapmapSnpsCombined
heteroCountCHB	hg/inc/hapmapAllelesCombined.h	/^    unsigned heteroCountCHB;	\/* Count of CHB individuals who are heterozygous *\/$/;"	m	struct:hapmapAllelesCombined
heteroCountCHB	hg/inc/hapmapSnpsCombined.h	/^    unsigned heteroCountCHB;	\/* Count of CHB individuals who are heterozygous *\/$/;"	m	struct:hapmapSnpsCombined
heteroCountJPT	hg/inc/hapmapAllelesCombined.h	/^    unsigned heteroCountJPT;	\/* Count of JPT individuals who are heterozygous *\/$/;"	m	struct:hapmapAllelesCombined
heteroCountJPT	hg/inc/hapmapSnpsCombined.h	/^    unsigned heteroCountJPT;	\/* Count of JPT individuals who are heterozygous *\/$/;"	m	struct:hapmapSnpsCombined
heteroCountYRI	hg/inc/hapmapAllelesCombined.h	/^    unsigned heteroCountYRI;	\/* Count of YRI individuals who are heterozygous *\/$/;"	m	struct:hapmapAllelesCombined
heteroCountYRI	hg/inc/hapmapSnpsCombined.h	/^    unsigned heteroCountYRI;	\/* Count of YRI individuals who are heterozygous *\/$/;"	m	struct:hapmapSnpsCombined
hetzyg	hg/inc/affy120KDetails.h	/^    float hetzyg;	\/* The heterozygosity from all observations *\/$/;"	m	struct:affy120KDetails
hetzyg	hg/inc/affyGenoDetails.h	/^    float hetzyg;	\/* The heterozygosity from all observations *\/$/;"	m	struct:affyGenoDetails
hexOne	hg/lib/hgExp.c	/^static void hexOne(double val)$/;"	f	file:
hfsFind	hg/lib/hgFind.c	/^static struct hgFindSpec *hfsFind(struct hgFindSpec *list, char *name)$/;"	f	file:
hgAddToExtFile	hg/lib/hgRelate.c	/^int hgAddToExtFile(char *path, struct sqlConnection *conn)$/;"	f
hgAddToExtFileTbl	hg/lib/hgRelate.c	/^int hgAddToExtFileTbl(char *path, struct sqlConnection *conn, char *extFileTbl)$/;"	f
hgAliHit	inc/hgap.h	/^struct hgAliHit$/;"	s
hgAlignment	inc/hgap.h	/^struct hgAlignment$/;"	s
hgAppName	hg/lib/hgFind.c	/^char *hgAppName = "";$/;"	v
hgBac	inc/hgap.h	/^struct hgBac$/;"	s
hgBotDelay	hg/lib/botDelay.c	/^void hgBotDelay()$/;"	f
hgBotDelayTime	hg/lib/botDelay.c	/^int hgBotDelayTime()$/;"	f
hgBoundedHit	inc/hgap.h	/^struct hgBoundedHit$/;"	s
hgColOutside	hg/lib/hgColors.c	/^char *hgColOutside()$/;"	f
hgContig	inc/hgap.h	/^struct hgContig$/;"	s
hgContigPad	inc/hgap.h	/^    hgContigPad = 800,	  \/* Number of N's between contigs. *\/$/;"	e	enum:__anon8
hgCreateTabFile	hg/lib/hgRelate.c	/^FILE *hgCreateTabFile(char *tmpDir, char *tableName)$/;"	f
hgCustomName	hg/lib/hCommon.c	/^char *hgCustomName()$/;"	f
hgDefaultGfxBorder	hg/inc/hCommon.h	95;"	d
hgDefaultLeftLabelWidth	hg/inc/hCommon.h	94;"	d
hgDefaultPixWidth	hg/inc/hCommon.h	90;"	d
hgDirForOrg	hg/lib/hdb.c	/^char *hgDirForOrg(char *org)$/;"	f
hgEndUpdate	hg/lib/hgRelate.c	/^void hgEndUpdate(struct sqlConnection **pConn, int startId, int endId, char *comment, ...)$/;"	f
hgExpCellPrint	hg/lib/hgExp.c	/^void hgExpCellPrint(char *colName, char *geneId, $/;"	f
hgExpColorDropDown	hg/lib/hgExp.c	/^void hgExpColorDropDown(struct cart *cart, char *varName)$/;"	f
hgExpGetNames	hg/lib/hgExp.c	/^char **hgExpGetNames(char *database, char *table, $/;"	f
hgExpLabelPrint	hg/lib/hgExp.c	/^void hgExpLabelPrint(char *database, char *colName, char *subName, int skipName,$/;"	f
hgExpLoadVals	hg/lib/hgExp.c	/^boolean hgExpLoadVals(struct sqlConnection *lookupConn,$/;"	f
hgExpRatioUseBlue	hg/lib/hgExp.c	/^boolean hgExpRatioUseBlue(struct cart *cart, char *varName)$/;"	f
hgFileUiName	hg/lib/hCommon.c	/^char *hgFileUiName()$/;"	f
hgFindChromBand	hg/lib/hgFind.c	/^void hgFindChromBand(char *db, char *chromosome, char *band, int *retStart, int *retEnd)$/;"	f
hgFindCytoBand	hg/lib/hgFind.c	/^boolean hgFindCytoBand(char *db, char *spec, char **retChromName, int *retWinStart,$/;"	f
hgFindSpec	hg/inc/hgFindSpec.h	/^struct hgFindSpec$/;"	s
hgFindSpecAddInfo	hg/lib/hgFindSpecCustom.c	/^static void hgFindSpecAddInfo(struct hgFindSpec *hfs, char *var, char *value)$/;"	f	file:
hgFindSpecCmp	hg/lib/hgFindSpecCustom.c	/^int hgFindSpecCmp(const void *va, const void *vb)$/;"	f
hgFindSpecCommaIn	hg/lib/hgFindSpec.c	/^struct hgFindSpec *hgFindSpecCommaIn(char **pS, struct hgFindSpec *ret)$/;"	f
hgFindSpecCommaOut	hg/inc/hgFindSpec.h	69;"	d
hgFindSpecFree	hg/lib/hgFindSpec.c	/^void hgFindSpecFree(struct hgFindSpec **pEl)$/;"	f
hgFindSpecFreeList	hg/lib/hgFindSpec.c	/^void hgFindSpecFreeList(struct hgFindSpec **pList)$/;"	f
hgFindSpecFromRa	hg/lib/hgFindSpecCustom.c	/^struct hgFindSpec *hgFindSpecFromRa(char *db, char *raFile)$/;"	f
hgFindSpecGetAllSpecs	hg/lib/hgFindSpecCustom.c	/^void hgFindSpecGetAllSpecs(char *db, $/;"	f
hgFindSpecGetSpecs	hg/lib/hgFindSpecCustom.c	/^struct hgFindSpec *hgFindSpecGetSpecs(char *db, boolean shortCircuit)$/;"	f
hgFindSpecLoad	hg/lib/hgFindSpec.c	/^struct hgFindSpec *hgFindSpecLoad(char **row)$/;"	f
hgFindSpecLoadAll	hg/lib/hgFindSpec.c	/^struct hgFindSpec *hgFindSpecLoadAll(char *fileName) $/;"	f
hgFindSpecLoadAllByChar	hg/lib/hgFindSpec.c	/^struct hgFindSpec *hgFindSpecLoadAllByChar(char *fileName, char chopper) $/;"	f
hgFindSpecLoadAllByTab	hg/inc/hgFindSpec.h	47;"	d
hgFindSpecNameList	hg/lib/hgFindSpecCustom.c	/^static struct slName *hgFindSpecNameList(char *db)$/;"	f	file:
hgFindSpecOutput	hg/lib/hgFindSpec.c	/^void hgFindSpecOutput(struct hgFindSpec *el, FILE *f, char sep, char lastSep) $/;"	f
hgFindSpecPolish	hg/lib/hgFindSpecCustom.c	/^static void hgFindSpecPolish(char *db, struct hgFindSpec *hfs)$/;"	f	file:
hgFindSpecPriCmp	hg/lib/hgFindSpecCustom.c	/^static int hgFindSpecPriCmp(const void *va, const void *vb)$/;"	f	file:
hgFindSpecRequiredSetting	hg/lib/hgFindSpecCustom.c	/^char *hgFindSpecRequiredSetting(struct hgFindSpec *hfs, char *name)$/;"	f
hgFindSpecSetting	hg/lib/hgFindSpecCustom.c	/^char *hgFindSpecSetting(struct hgFindSpec *hfs, char *name)$/;"	f
hgFindSpecSettingOrDefault	hg/lib/hgFindSpecCustom.c	/^char *hgFindSpecSettingOrDefault(struct hgFindSpec *hfs, char *name,$/;"	f
hgFindSpecStaticLoad	hg/lib/hgFindSpec.c	/^void hgFindSpecStaticLoad(char **row, struct hgFindSpec *ret)$/;"	f
hgFindSpecTabOut	hg/inc/hgFindSpec.h	66;"	d
hgFindUsingSpec	hg/lib/hgFind.c	/^boolean hgFindUsingSpec(char *db, struct hgFindSpec *hfs, char *term,$/;"	f
hgGene	hg/inc/hgGene.h	/^    unsigned hgGene;	\/* Gene this is in *\/$/;"	m	struct:hgTranscript
hgGene	hg/inc/hgGene.h	/^struct hgGene$/;"	s
hgGene	inc/hgGene.h	/^    unsigned hgGene;	\/* Gene this is in *\/$/;"	m	struct:hgTranscript
hgGene	inc/hgGene.h	/^struct hgGene$/;"	s
hgGeneCommaIn	hg/lib/hgGene.c	/^struct hgGene *hgGeneCommaIn(char **pS)$/;"	f
hgGeneCommaOut	hg/inc/hgGene.h	81;"	d
hgGeneCommaOut	inc/hgGene.h	81;"	d
hgGeneFree	hg/lib/hgGene.c	/^void hgGeneFree(struct hgGene **pEl)$/;"	f
hgGeneFreeList	hg/lib/hgGene.c	/^void hgGeneFreeList(struct hgGene **pList)$/;"	f
hgGeneLoad	hg/lib/hgGene.c	/^struct hgGene *hgGeneLoad(char **row)$/;"	f
hgGeneOutput	hg/lib/hgGene.c	/^void hgGeneOutput(struct hgGene *el, FILE *f, char sep, char lastSep) $/;"	f
hgGeneTabOut	hg/inc/hgGene.h	78;"	d
hgGeneTabOut	inc/hgGene.h	78;"	d
hgGetMaxId	hg/lib/hgRelate.c	/^HGID hgGetMaxId(struct sqlConnection *conn, char *tableName)$/;"	f
hgHistoryComment	hg/lib/hgRelate.c	/^void hgHistoryComment(struct sqlConnection *conn, char *comment, ...)$/;"	f
hgHistoryCommentWithIds	hg/lib/hgRelate.c	/^void hgHistoryCommentWithIds(struct sqlConnection *conn, int startId, int endId, char *comment, ...)$/;"	f
hgHistoryEnterVa	hg/lib/hgRelate.c	/^static void hgHistoryEnterVa(struct sqlConnection *conn, int startId, int endId, char *comment, va_list args)$/;"	f	file:
hgHit	inc/hgap.h	/^struct hgHit$/;"	s
hgHubConnectCgiDestUrl	hg/inc/hubConnect.h	64;"	d
hgHubConnectHubVarPrefix	hg/inc/hubConnect.h	70;"	d
hgHubConnectName	hg/lib/hCommon.c	/^char *hgHubConnectName()$/;"	f
hgHubConnectRemakeTrackHub	hg/inc/hubConnect.h	67;"	d
hgHubDataText	hg/inc/hubConnect.h	22;"	d
hgIsChromRange	hg/lib/hdb.c	/^boolean hgIsChromRange(char *db, char *spec)$/;"	f
hgIsCytoBandName	hg/lib/hgFind.c	/^boolean hgIsCytoBandName(char *db, char *spec, char **retChromName, char **retBandName)$/;"	f
hgIsOfficialChromName	hg/lib/hdb.c	/^boolean hgIsOfficialChromName(char *db, char *name)$/;"	f
hgLoadNamedTabFile	hg/lib/hgRelate.c	/^void hgLoadNamedTabFile(struct sqlConnection *conn, char *tmpDir, char *tableName,$/;"	f
hgLoadTabFile	hg/lib/hgRelate.c	/^void hgLoadTabFile(struct sqlConnection *conn, char *tmpDir, char *tableName,$/;"	f
hgLoadTabFileOpts	hg/lib/hgRelate.c	/^void hgLoadTabFileOpts(struct sqlConnection *conn, char *tmpDir, char *tableName,$/;"	f
hgMafFrag	hg/lib/hgMaf.c	/^struct mafAli *hgMafFrag($/;"	f
hgNearOk	hg/inc/dbDb.h	/^    signed char hgNearOk;	\/* Have hgNear for this? *\/$/;"	m	struct:dbDb
hgNearOk	hg/lib/hdb.c	/^boolean hgNearOk(char *database)$/;"	f
hgNest	inc/hgap.h	/^struct hgNest$/;"	s
hgOfficialChromName	hg/lib/hdb.c	/^char *hgOfficialChromName(char *db, char *name)$/;"	f
hgPalName	hg/lib/hCommon.c	/^char *hgPalName()$/;"	f
hgParseChromRange	hg/lib/hdb.c	/^boolean hgParseChromRange(char *db, char *spec, char **retChromName,$/;"	f
hgPbOk	hg/inc/dbDb.h	/^    signed char hgPbOk;	\/* Have pbTracks for this? *\/$/;"	m	struct:dbDb
hgPbOk	hg/lib/hdb.c	/^boolean hgPbOk(char *database)$/;"	f
hgPcrOk	hg/lib/hdb.c	/^boolean hgPcrOk(char *database)$/;"	f
hgPos	hg/inc/hgFind.h	/^struct hgPos$/;"	s
hgPosBrowserRange	hg/lib/hgFind.c	/^static char *hgPosBrowserRange(struct hgPos *pos, char range[HGPOSRANGESIZE])$/;"	f	file:
hgPosFree	hg/lib/hgFind.c	/^static void hgPosFree(struct hgPos **pEl)$/;"	f	file:
hgPosFreeList	hg/lib/hgFind.c	/^static void hgPosFreeList(struct hgPos **pList)$/;"	f	file:
hgPosTable	hg/inc/hgFind.h	/^struct hgPosTable$/;"	s
hgPosTableFree	hg/lib/hgFind.c	/^static void hgPosTableFree(struct hgPosTable **pEl)$/;"	f	file:
hgPosTableFreeList	hg/lib/hgFind.c	/^static void hgPosTableFreeList(struct hgPosTable **pList)$/;"	f	file:
hgPositions	hg/inc/hgFind.h	/^struct hgPositions $/;"	s
hgPositionsFind	hg/lib/hgFind.c	/^struct hgPositions *hgPositionsFind(char *db, char *term, char *extraCgi,$/;"	f
hgPositionsFree	hg/lib/hgFind.c	/^static void hgPositionsFree(struct hgPositions **pEl)$/;"	f	file:
hgPositionsHelpHtml	hg/lib/hgFind.c	/^void hgPositionsHelpHtml(char *organism, char *database)$/;"	f
hgPositionsHtml	hg/lib/hgFind.c	/^void hgPositionsHtml(char *db, struct hgPositions *hgp, FILE *f,$/;"	f
hgPurgeExtFile	hg/lib/hgRelate.c	/^void hgPurgeExtFile(int id,  struct sqlConnection *conn)$/;"	f
hgPurgeExtFileTbl	hg/lib/hgRelate.c	/^void hgPurgeExtFileTbl(int id, struct sqlConnection *conn, char *extFileTbl)$/;"	f
hgRange	inc/hgap.h	/^struct hgRange$/;"	s
hgReadRa	hg/lib/hdb.c	/^struct hash *hgReadRa(char *genome, char *database, char *rootDir,$/;"	f
hgRemoveTabFile	hg/lib/hgRelate.c	/^void hgRemoveTabFile(char *tmpDir, char *tableName)$/;"	f
hgScoredHit	inc/hgap.h	/^struct hgScoredHit$/;"	s
hgSeqBed	hg/lib/hgSeq.c	/^int hgSeqBed(char *db, struct hTableInfo *hti, struct bed *bedList)$/;"	f
hgSeqChromSize	hg/lib/hgSeq.c	/^int hgSeqChromSize(char *db, char *chromName)$/;"	f
hgSeqConcatRegionsDb	hg/lib/hgSeq.c	/^static void hgSeqConcatRegionsDb(char *db, char *chrom, int chromSize, char strand, char *name,$/;"	f	file:
hgSeqDisplayOptions	hg/lib/hgSeq.c	/^static void hgSeqDisplayOptions(struct cart *cart, boolean canDoUTR,$/;"	f	file:
hgSeqFeatureRegionOptions	hg/lib/hgSeq.c	/^static void hgSeqFeatureRegionOptions(struct cart *cart, boolean canDoUTR,$/;"	f	file:
hgSeqItemsInRange	hg/lib/hgSeq.c	/^int hgSeqItemsInRange(char *db, char *table, char *chrom, int chromStart,$/;"	f
hgSeqOptions	hg/lib/hgSeq.c	/^void hgSeqOptions(struct cart *cart, char *db, char *table)$/;"	f
hgSeqOptionsHti	hg/lib/hgSeq.c	/^void hgSeqOptionsHti(struct hTableInfo *hti)$/;"	f
hgSeqOptionsHtiCart	hg/lib/hgSeq.c	/^void hgSeqOptionsHtiCart(struct hTableInfo *hti, struct cart *cart)$/;"	f
hgSeqRange	hg/lib/hgSeq.c	/^void hgSeqRange(char *db, char *chrom, int chromStart, int chromEnd, char strand,$/;"	f
hgSeqRegionsAdjDb	hg/lib/hgSeq.c	/^static void hgSeqRegionsAdjDb(char *db, char *chrom, int chromSize, char strand, char *name,$/;"	f	file:
hgSeqRegionsDb	hg/lib/hgSeq.c	/^static void hgSeqRegionsDb(char *db, char *chrom, int chromSize, char strand, char *name,$/;"	f	file:
hgSessionName	hg/lib/hCommon.c	/^char *hgSessionName()$/;"	f
hgSessionPrefix	hg/inc/cart.h	440;"	d
hgStartUpdate	hg/lib/hgRelate.c	/^struct sqlConnection *hgStartUpdate(char *db)$/;"	f
hgTablesName	hg/lib/hCommon.c	/^char *hgTablesName()$/;"	f
hgTextName	hg/lib/hCommon.c	/^char *hgTextName()$/;"	f
hgTrackUiName	hg/lib/hCommon.c	/^char *hgTrackUiName()$/;"	f
hgTracksName	hg/lib/hCommon.c	/^char *hgTracksName()$/;"	f
hgTranscript	hg/inc/hgGene.h	/^struct hgTranscript$/;"	s
hgTranscript	inc/hgGene.h	/^struct hgTranscript$/;"	s
hgTranscriptCommaIn	hg/lib/hgGene.c	/^struct hgTranscript *hgTranscriptCommaIn(char **pS)$/;"	f
hgTranscriptCommaOut	hg/inc/hgGene.h	127;"	d
hgTranscriptCommaOut	inc/hgGene.h	127;"	d
hgTranscriptFree	hg/lib/hgGene.c	/^void hgTranscriptFree(struct hgTranscript **pEl)$/;"	f
hgTranscriptFreeList	hg/lib/hgGene.c	/^void hgTranscriptFreeList(struct hgTranscript **pList)$/;"	f
hgTranscriptLoad	hg/lib/hgGene.c	/^struct hgTranscript *hgTranscriptLoad(char **row)$/;"	f
hgTranscriptOutput	hg/lib/hgGene.c	/^void hgTranscriptOutput(struct hgTranscript *el, FILE *f, char sep, char lastSep) $/;"	f
hgTranscriptTabOut	hg/inc/hgGene.h	124;"	d
hgTranscriptTabOut	inc/hgGene.h	124;"	d
hgUnlinkTabFile	hg/lib/hgRelate.c	/^int hgUnlinkTabFile(char *tmpDir, char *tableName)$/;"	f
hgVarAnnogratorName	hg/lib/hCommon.c	/^char *hgVarAnnogratorName()$/;"	f
hgcName	hg/lib/hCommon.c	/^char *hgcName()$/;"	f
hgdpGeo	hg/inc/hgdpGeo.h	/^struct hgdpGeo$/;"	s
hgdpGeoCommaIn	hg/lib/hgdpGeo.c	/^struct hgdpGeo *hgdpGeoCommaIn(char **pS, struct hgdpGeo *ret)$/;"	f
hgdpGeoCommaOut	hg/inc/hgdpGeo.h	62;"	d
hgdpGeoFree	hg/lib/hgdpGeo.c	/^void hgdpGeoFree(struct hgdpGeo **pEl)$/;"	f
hgdpGeoFreeList	hg/lib/hgdpGeo.c	/^void hgdpGeoFreeList(struct hgdpGeo **pList)$/;"	f
hgdpGeoLoad	hg/lib/hgdpGeo.c	/^struct hgdpGeo *hgdpGeoLoad(char **row)$/;"	f
hgdpGeoLoadAll	hg/lib/hgdpGeo.c	/^struct hgdpGeo *hgdpGeoLoadAll(char *fileName) $/;"	f
hgdpGeoLoadAllByChar	hg/lib/hgdpGeo.c	/^struct hgdpGeo *hgdpGeoLoadAllByChar(char *fileName, char chopper) $/;"	f
hgdpGeoLoadAllByTab	hg/inc/hgdpGeo.h	40;"	d
hgdpGeoOutput	hg/lib/hgdpGeo.c	/^void hgdpGeoOutput(struct hgdpGeo *el, FILE *f, char sep, char lastSep) $/;"	f
hgdpGeoStaticLoad	hg/lib/hgdpGeo.c	/^void hgdpGeoStaticLoad(char **row, struct hgdpGeo *ret)$/;"	f
hgdpGeoTabOut	hg/inc/hgdpGeo.h	59;"	d
hgnc	hg/inc/hgnc.h	/^struct hgnc$/;"	s
hgncCommaIn	hg/lib/hgnc.c	/^struct hgnc *hgncCommaIn(char **pS, struct hgnc *ret)$/;"	f
hgncCommaOut	hg/inc/hgnc.h	95;"	d
hgncFree	hg/lib/hgnc.c	/^void hgncFree(struct hgnc **pEl)$/;"	f
hgncFreeList	hg/lib/hgnc.c	/^void hgncFreeList(struct hgnc **pList)$/;"	f
hgncId	hg/inc/hgnc.h	/^    char *hgncId;	\/* HGNC ID *\/$/;"	m	struct:hgnc
hgncLoadAll	hg/lib/hgnc.c	/^struct hgnc *hgncLoadAll(char *fileName) $/;"	f
hgncLoadAllByChar	hg/lib/hgnc.c	/^struct hgnc *hgncLoadAllByChar(char *fileName, char chopper) $/;"	f
hgncLoadAllByTab	hg/inc/hgnc.h	73;"	d
hgncLoadWithNull	hg/lib/hgnc.c	/^struct hgnc *hgncLoadWithNull(char **row)$/;"	f
hgncOutput	hg/lib/hgnc.c	/^void hgncOutput(struct hgnc *el, FILE *f, char sep, char lastSep) $/;"	f
hgncStaticLoadWithNull	hg/lib/hgnc.c	/^void hgncStaticLoadWithNull(char **row, struct hgnc *ret)$/;"	f
hgncTabOut	hg/inc/hgnc.h	92;"	d
hgpMatchNames	hg/lib/hgFind.c	/^static struct dyString *hgpMatchNames = NULL;$/;"	v	typeref:struct:dyString	file:
hgsDoLoadUrl	hg/inc/cart.h	447;"	d
hgsDoOtherUser	hg/inc/cart.h	444;"	d
hgsLoadUrlName	hg/inc/cart.h	446;"	d
hgsOtherUserName	hg/inc/cart.h	442;"	d
hgsOtherUserSessionName	hg/inc/cart.h	443;"	d
hgtaCGIGeneExons	hg/lib/pal.c	17;"	d	file:
hgtaCGIGeneMafTable	hg/lib/pal.c	15;"	d	file:
hgtaCGIGeneNoTrans	hg/lib/pal.c	19;"	d	file:
hgtaCGIGeneOutBlank	hg/lib/pal.c	21;"	d	file:
hgtaCGINumColumns	hg/lib/pal.c	25;"	d	file:
hgtaCGIOutTable	hg/lib/pal.c	23;"	d	file:
hgtaCGITruncHeader	hg/lib/pal.c	27;"	d	file:
hgtaJSGeneExons	hg/lib/pal.c	18;"	d	file:
hgtaJSGeneMafTable	hg/lib/pal.c	16;"	d	file:
hgtaJSGeneNoTrans	hg/lib/pal.c	20;"	d	file:
hgtaJSGeneOutBlank	hg/lib/pal.c	22;"	d	file:
hgtaJSNumColumns	hg/lib/pal.c	26;"	d	file:
hgtaJSOutTable	hg/lib/pal.c	24;"	d	file:
hgtaJSTruncHeader	hg/lib/pal.c	28;"	d	file:
hhi	lib/gifcodes.h	/^	unsigned char hlo,hhi;$/;"	m	struct:gif_header
hhi	lib/gifcodes.h	/^	unsigned char hlo,hhi;$/;"	m	struct:gif_image
hi	lib/chainBlock.c	/^    struct kdBranch *hi;      \/* Pointer to children with higher coordinates. *\/$/;"	m	struct:kdBranch	typeref:struct:kdBranch::kdBranch	file:
hiFiFromCodingCost	jkOwnLib/xensmall.c	/^static int hiFiFromCodingCost;$/;"	v	file:
hiFiFromInsertCost	jkOwnLib/xensmall.c	/^static int hiFiFromInsertCost;$/;"	v	file:
hiFiFromLoFiCost	jkOwnLib/xensmall.c	/^static int hiFiFromLoFiCost;$/;"	v	file:
hiFiIx	jkOwnLib/xensmall.c	/^    hiFiIx = 0,$/;"	e	enum:sevenStateIx	file:
hiFiMatchTable	jkOwnLib/xensmall.c	/^static int hiFiMatchTable[26*32];$/;"	v	file:
hiFiSmallGapCost	jkOwnLib/xensmall.c	/^static int hiFiSmallGapCost;$/;"	v	file:
hiddenIx	lib/pairHmm.c	/^    UBYTE hiddenIx;  \/* If I code one of these with more than 255 states shoot me! *\/$/;"	m	struct:phmmAliPair	file:
hiddenSym	lib/pairHmm.c	/^    char hiddenSym;$/;"	m	struct:phmmAliPair	file:
hideLittleOrphans	hg/lib/ggGraph.c	/^static boolean hideLittleOrphans(struct geneGraph *gg)$/;"	f	file:
hideShowDropDown	hg/inc/hui.h	213;"	d
hideShowDropDownWithClassAndExtra	hg/lib/hui.c	/^void hideShowDropDownWithClassAndExtra(char *varName, boolean show, char *class, char *extra)$/;"	f
hierarchyFree	hg/lib/hui.c	/^static void hierarchyFree(hierarchy_t **hierarchy)$/;"	f	file:
hierarchySettingGet	hg/lib/hui.c	/^static hierarchy_t *hierarchySettingGet(struct trackDb *parentTdb)$/;"	f	file:
hierarchy_t	hg/lib/hui.c	/^} hierarchy_t;$/;"	t	typeref:struct:_hierarchy	file:
highestId	lib/trix.c	/^static char *highestId(struct trixWordResult *twrList)$/;"	f	file:
hints	inc/pscmGfx.h	/^    struct hash *hints;   \/* Hints to guide behavior *\/$/;"	m	struct:pscmGfx	typeref:struct:pscmGfx::hash
histoGram	lib/histogram.c	/^struct histoResult *histoGram(float *values, size_t N, float binSize,$/;"	f
histoResult	inc/histogram.h	/^struct histoResult {$/;"	s
historyCreate	hg/lib/hgRelate.c	/^static char historyCreate[] =	$/;"	v	file:
hit	hg/lib/hgMaf.c	/^    boolean hit;	\/* Flag to see if hit this time around. *\/$/;"	m	struct:oneOrg	file:
hit	lib/chainBlock.c	/^    bool hit;			\/* This hit? Used by system internally. *\/$/;"	m	struct:kdLeaf	file:
hit	lib/trix.c	/^    struct trixHitPos *hit;	\/* Current position while iterating through hit list. *\/$/;"	m	struct:trixWordResult	typeref:struct:trixWordResult::trixHitPos	file:
hitBlocks	jkOwnLib/patSpace.c	/^    int hitBlocks[maxBlockCount];        \/* Indexes of blocks with hits. *\/$/;"	m	struct:patSpace	file:
hitCount	inc/genoFind.h	/^    int hitCount;		\/* Number of hits. *\/$/;"	m	struct:gfClump
hitCount	jkOwnLib/crudeali.c	/^    int hitCount;$/;"	m	struct:crudeExon	file:
hitList	inc/genoFind.h	/^    struct gfHit *hitList;	\/* List of hits. Not allocated here. *\/$/;"	m	struct:gfClump	typeref:struct:gfClump::gfHit
hitList	inc/hgap.h	/^    struct hgBoundedHit *hitList;  \/*  Subalignments. *\/$/;"	m	struct:hgAlignment	typeref:struct:hgAlignment::hgBoundedHit
hitList	lib/trix.c	/^    struct trixHitPos *hitList;	\/* Hit list.  May be shared (not allocated here). *\/$/;"	m	struct:trixWordResult	typeref:struct:trixWordResult::trixHitPos	file:
hits	jkOwnLib/fuzzyFind.c	/^    struct ffAli *hits;$/;"	m	struct:protoGene	typeref:struct:protoGene::ffAli	file:
hlf_dist	lib/gemfont.h	/^WORD	hlf_dist;$/;"	m	struct:font_hdr
hlo	lib/gifcodes.h	/^	unsigned char hlo,hhi;$/;"	m	struct:gif_header
hlo	lib/gifcodes.h	/^	unsigned char hlo,hhi;$/;"	m	struct:gif_image
hmmEnd	inc/hmmPfamParse.h	/^    int hmmStart, hmmEnd; \/* Where this is in profile HMM. *\/$/;"	m	struct:hpfDomain
hmmScore	hg/inc/snoRNAs.h	/^    float hmmScore;	\/* score to HMM snoRNA model *\/$/;"	m	struct:snoRNAs
hmmScore	hg/lib/snoRNAs.h	/^    float hmmScore;	\/* score to HMM snoRNA model *\/$/;"	m	struct:snoRNAs
hmmStart	inc/hmmPfamParse.h	/^    int hmmStart, hmmEnd; \/* Where this is in profile HMM. *\/$/;"	m	struct:hpfDomain
hname	hg/inc/exprBed.h	/^    char *hname;	\/* feature human name: can be a gene, exon or other *\/$/;"	m	struct:exprBed
homoCount1	hg/inc/hapmapAlleles.h	/^    unsigned homoCount1;	\/* Count of individuals who are homozygous for allele1 *\/$/;"	m	struct:hapmapAlleles
homoCount1	hg/inc/hapmapSnps.h	/^    unsigned homoCount1;	\/* Count of individuals who are homozygous for allele1 *\/$/;"	m	struct:hapmapSnps
homoCount1CEU	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount1CEU;	\/* Count of CEU individuals who are homozygous for allele1 *\/$/;"	m	struct:hapmapSnpsCombined
homoCount1CHB	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount1CHB;	\/* Count of CHB individuals who are homozygous for allele1 *\/$/;"	m	struct:hapmapSnpsCombined
homoCount1JPT	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount1JPT;	\/* Count of JPT individuals who are homozygous for allele1 *\/$/;"	m	struct:hapmapSnpsCombined
homoCount1YRI	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount1YRI;	\/* Count of YRI individuals who are homozygous for allele1 *\/$/;"	m	struct:hapmapSnpsCombined
homoCount2	hg/inc/hapmapAlleles.h	/^    unsigned homoCount2;	\/* Count of individuals who are homozygous for allele2 *\/$/;"	m	struct:hapmapAlleles
homoCount2	hg/inc/hapmapSnps.h	/^    unsigned homoCount2;	\/* Count of individuals who are homozygous for allele2 *\/$/;"	m	struct:hapmapSnps
homoCount2CEU	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount2CEU;	\/* Count of CEU individuals who are homozygous for allele2 *\/$/;"	m	struct:hapmapSnpsCombined
homoCount2CHB	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount2CHB;	\/* Count of CHB individuals who are homozygous for allele2 *\/$/;"	m	struct:hapmapSnpsCombined
homoCount2JPT	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount2JPT;	\/* Count of JPT individuals who are homozygous for allele2 *\/$/;"	m	struct:hapmapSnpsCombined
homoCount2YRI	hg/inc/hapmapSnpsCombined.h	/^    unsigned homoCount2YRI;	\/* Count of YRI individuals who are homozygous for allele2 *\/$/;"	m	struct:hapmapSnpsCombined
host	hg/inc/blatServers.h	/^    char *host;	\/* Host (machine) name *\/$/;"	m	struct:blatServers
host	hg/inc/hdb.h	/^    char *host;		\/* Name of machine hosting server. *\/$/;"	m	struct:blatServerTable
host	hg/lib/jksql.c	/^    char *host;					\/* Host machine of database. *\/$/;"	m	struct:sqlConnCache	file:
host	hg/lib/jksql.c	/^    char *host;         \/\/ host name for database server$/;"	m	struct:sqlProfile	file:
host	inc/gfWebLib.h	/^    char *host;		\/* IP Address of machine running server. *\/$/;"	m	struct:gfServerAt
host	inc/net.h	/^   char host[128];	\/* Name of host computer - www.yahoo.com, etc. *\/$/;"	m	struct:netParsedUrl
hostName	lib/https.c	/^char *hostName;$/;"	m	struct:netConnectHttpsParams	file:
how	hg/inc/genoLay.h	/^    char *how;				\/* How parameter from genoLayNew. *\/$/;"	m	struct:genoLay
hpfDomain	inc/hmmPfamParse.h	/^struct hpfDomain$/;"	s
hpfFindResultInModel	lib/hmmPfamParse.c	/^struct hpfModel *hpfFindResultInModel(struct hpfResult *hr, char *modName)$/;"	f
hpfModel	inc/hmmPfamParse.h	/^struct hpfModel $/;"	s
hpfModelFree	lib/hmmPfamParse.c	/^void hpfModelFree(struct hpfModel **pMod)$/;"	f
hpfModelFreeList	lib/hmmPfamParse.c	/^void hpfModelFreeList(struct hpfModel **pList)$/;"	f
hpfNext	lib/hmmPfamParse.c	/^struct hpfResult *hpfNext(struct lineFile *lf)$/;"	f
hpfResult	inc/hmmPfamParse.h	/^struct hpfResult$/;"	s
hpfResultFree	lib/hmmPfamParse.c	/^void hpfResultFree(struct hpfResult **pHr)$/;"	f
hpfResultFreeList	lib/hmmPfamParse.c	/^void hpfResultFreeList(struct hpfResult **pList)$/;"	f
hseq	hg/inc/ancientRref.h	/^    char *hseq;	\/* Human sequence with gaps *\/$/;"	m	struct:ancientRref
hslColor	inc/memgfx.h	/^struct hslColor$/;"	s
hsvColor	inc/memgfx.h	/^struct hsvColor$/;"	s
hsvSatMax	inc/memgfx.h	363;"	d
hsvValMax	inc/memgfx.h	362;"	d
htmEmptyShell	lib/htmshell.c	/^void htmEmptyShell(void (*doMiddle)(), char *method)$/;"	f
htmEnd	lib/htmshell.c	/^void htmEnd(FILE *f)$/;"	f
htmErrOnlyShell	lib/htmshell.c	/^void htmErrOnlyShell(void (*doMiddle)())$/;"	f
htmHorizontalLine	lib/htmshell.c	/^void htmHorizontalLine(FILE *f)$/;"	f
htmShell	lib/htmshell.c	/^void htmShell(char *title, void (*doMiddle)(), char *method)$/;"	f
htmShellWithHead	lib/htmshell.c	/^void htmShellWithHead( char *title, char *head, void (*doMiddle)(), char *method)$/;"	f
htmStart	lib/htmshell.c	/^void htmStart(FILE *f, char *title)$/;"	f
htmStartDirDepth	lib/htmshell.c	/^void htmStartDirDepth(FILE *f, char *title, int dirDepth)$/;"	f
htmStartWithHead	lib/htmshell.c	/^void htmStartWithHead(FILE *f, char *head, char *title)$/;"	f
htmTextOut	lib/htmshell.c	/^void htmTextOut(FILE *f, char *s)$/;"	f
html	hg/inc/itemDetailsHtml.h	/^    char *html;	\/* HTML fragment to include *\/$/;"	m	struct:itemDetailsHtml
html	hg/inc/trackDb.h	/^    char *html;	\/* Some html to display when they click on an item *\/$/;"	m	struct:trackDb
htmlAbort	lib/htmshell.c	/^void htmlAbort()$/;"	f
htmlAttribute	inc/htmlPage.h	/^struct htmlAttribute$/;"	s
htmlAttributeFindVal	lib/htmlPage.c	/^static char *htmlAttributeFindVal(struct htmlAttribute *list, char *name)$/;"	f	file:
htmlAttributeFree	lib/htmlPage.c	/^void htmlAttributeFree(struct htmlAttribute **pAttribute)$/;"	f
htmlAttributeFreeList	lib/htmlPage.c	/^void htmlAttributeFreeList(struct htmlAttribute **pList)$/;"	f
htmlBackground	lib/htmshell.c	/^static char *htmlBackground = NULL;$/;"	v	file:
htmlBadVar	lib/htmshell.c	/^void htmlBadVar(char *varName)$/;"	f
htmlBgColor	lib/htmshell.c	/^static int htmlBgColor = 0xFFFFFF;$/;"	v	file:
htmlCenterParagraph	lib/htmshell.c	/^void htmlCenterParagraph(char *line, ...)$/;"	f
htmlCloneFormVarSet	hg/lib/wikiTrack.c	/^void htmlCloneFormVarSet(struct htmlForm *parent,$/;"	f
htmlCookie	inc/htmlPage.h	/^struct htmlCookie$/;"	s
htmlCookieFileRead	lib/htmlPage.c	/^struct htmlCookie *htmlCookieFileRead(char *fileName)$/;"	f
htmlCookieFree	lib/htmlPage.c	/^void htmlCookieFree(struct htmlCookie **pCookie)$/;"	f
htmlCookieFreeList	lib/htmlPage.c	/^void htmlCookieFreeList(struct htmlCookie **pList)$/;"	f
htmlDoEscape	lib/htmshell.c	/^void htmlDoEscape()$/;"	f
htmlEncode	inc/htmshell.h	55;"	d
htmlEncodeText	lib/htmshell.c	/^char *htmlEncodeText(char *s,boolean tagsOkay)$/;"	f
htmlEnd	hg/inc/hgFind.h	/^    void (*htmlEnd)(struct hgPosTable *table, FILE *f);    \/* Print end. *\/$/;"	m	struct:hgPosTable
htmlEnd	lib/htmshell.c	/^void htmlEnd()$/;"	f
htmlExpandUrl	lib/htmlPage.c	/^char *htmlExpandUrl(char *base, char *url)$/;"	f
htmlFile	hg/inc/customTrack.h	/^    char *htmlFile;             \/* name of .html file in trash *\/$/;"	m	struct:customTrack
htmlForm	inc/htmlPage.h	/^struct htmlForm$/;"	s
htmlFormCgiVars	lib/htmlPage.c	/^char *htmlFormCgiVars(struct htmlPage *page, struct htmlForm *form, $/;"	f
htmlFormClass	lib/htmshell.c	/^static char *htmlFormClass = NULL;$/;"	v	file:
htmlFormFree	lib/htmlPage.c	/^void htmlFormFree(struct htmlForm **pForm)$/;"	f
htmlFormFreeList	lib/htmlPage.c	/^void htmlFormFreeList(struct htmlForm **pList)$/;"	f
htmlFormGet	lib/htmlPage.c	/^struct htmlForm *htmlFormGet(struct htmlPage *page, char *name)$/;"	f
htmlFormPrint	lib/htmlPage.c	/^void htmlFormPrint(struct htmlForm *form, FILE *f)$/;"	f
htmlFormVar	inc/htmlPage.h	/^struct htmlFormVar$/;"	s
htmlFormVarAddValue	lib/htmlPage.c	/^static void htmlFormVarAddValue(struct htmlFormVar *var, char *value)$/;"	f	file:
htmlFormVarFree	lib/htmlPage.c	/^void htmlFormVarFree(struct htmlFormVar **pVar)$/;"	f
htmlFormVarFreeList	lib/htmlPage.c	/^void htmlFormVarFreeList(struct htmlFormVar **pList)$/;"	f
htmlFormVarGet	lib/htmlPage.c	/^struct htmlFormVar *htmlFormVarGet(struct htmlForm *form, char *name)$/;"	f
htmlFormVarPrint	lib/htmlPage.c	/^void htmlFormVarPrint(struct htmlFormVar *var, FILE *f, char *prefix)$/;"	f
htmlFormVarSet	lib/htmlPage.c	/^void htmlFormVarSet(struct htmlForm *form, char *name, char *val)$/;"	f
htmlHeaderRead	lib/htmlPage.c	/^static struct hash *htmlHeaderRead(char **pHtml, struct htmlCookie **pCookies)$/;"	f	file:
htmlHorizontalLine	lib/htmshell.c	/^void htmlHorizontalLine()$/;"	f
htmlId	hg/inc/hui.h	/^    char*htmlId;         \/\/ {tableName}.sortOrder$/;"	m	struct:_sortOrder
htmlImage	lib/htmshell.c	/^void htmlImage(char *fileName, int width, int height)$/;"	f
htmlIncludeFile	lib/htmshell.c	/^void htmlIncludeFile(char *path)$/;"	f
htmlIncludeWebFile	lib/htmshell.c	/^void htmlIncludeWebFile(char *file)$/;"	f
htmlMemDeath	lib/htmshell.c	/^void htmlMemDeath()$/;"	f
htmlName	hg/inc/hui.h	/^    char*htmlName;            \/\/ Name used in HTML\/CGI$/;"	m	struct:_filterBy
htmlNbSpaces	lib/htmshell.c	/^void htmlNbSpaces(int count)$/;"	f
htmlNextCrLfLine	lib/htmlPage.c	/^char *htmlNextCrLfLine(char **pS)$/;"	f
htmlNoEscape	lib/htmshell.c	/^void htmlNoEscape()$/;"	f
htmlOnePos	hg/inc/hgFind.h	/^    void (*htmlOnePos)(struct hgPosTable *table, struct hgPos *pos, FILE *f); \/* Print one position. *\/$/;"	m	struct:hgPosTable
htmlPage	inc/htmlPage.h	/^struct htmlPage$/;"	s
htmlPageFormOrAbort	lib/htmlPage.c	/^void htmlPageFormOrAbort(struct htmlPage *page)$/;"	f
htmlPageForwarded	lib/htmlPage.c	/^struct htmlPage *htmlPageForwarded(char *url, struct htmlCookie *cookies)$/;"	f
htmlPageForwardedNoAbort	lib/htmlPage.c	/^struct htmlPage *htmlPageForwardedNoAbort(char *url, struct htmlCookie *cookies)$/;"	f
htmlPageFree	lib/htmlPage.c	/^void htmlPageFree(struct htmlPage **pPage)$/;"	f
htmlPageFreeList	lib/htmlPage.c	/^void htmlPageFreeList(struct htmlPage **pList)$/;"	f
htmlPageFromForm	lib/htmlPage.c	/^struct htmlPage *htmlPageFromForm(struct htmlPage *origPage, struct htmlForm *form, $/;"	f
htmlPageGet	lib/htmlPage.c	/^struct htmlPage *htmlPageGet(char *url)$/;"	f
htmlPageGetVar	lib/htmlPage.c	/^struct htmlFormVar *htmlPageGetVar(struct htmlPage *page, struct htmlForm *form, char *name)$/;"	f
htmlPageGetWithCookies	lib/htmlPage.c	/^struct htmlPage *htmlPageGetWithCookies(char *url, struct htmlCookie *cookies)$/;"	f
htmlPageLinks	lib/htmlPage.c	/^struct slName *htmlPageLinks(struct htmlPage *page)$/;"	f
htmlPageParse	lib/htmlPage.c	/^struct htmlPage *htmlPageParse(char *url, char *fullText)$/;"	f
htmlPageParseNoHead	lib/htmlPage.c	/^struct htmlPage *htmlPageParseNoHead(char *url, char *htmlText)$/;"	f
htmlPageParseOk	lib/htmlPage.c	/^struct htmlPage *htmlPageParseOk(char *url, char *fullText)$/;"	f
htmlPageScanAttribute	lib/htmlPage.c	/^struct slName *htmlPageScanAttribute(struct htmlPage *page, $/;"	f
htmlPageSetVar	lib/htmlPage.c	/^void htmlPageSetVar(struct htmlPage *page, struct htmlForm *form, char *name, char *val)$/;"	f
htmlPageValidateOrAbort	lib/htmlPage.c	/^void htmlPageValidateOrAbort(struct htmlPage *page)$/;"	f
htmlParagraph	lib/htmshell.c	/^void htmlParagraph(char *line, ...)$/;"	f
htmlParseForms	lib/htmlPage.c	/^static struct htmlForm *htmlParseForms(struct htmlPage *page,$/;"	f	file:
htmlPath	hg/inc/dbDb.h	/^    char *htmlPath;	\/* path in \/gbdb for assembly description *\/$/;"	m	struct:dbDb
htmlPrintJointAlignment	lib/jointalign.c	/^void htmlPrintJointAlignment( char *seq1, char *seq2, int columnNum, $/;"	f
htmlPrintJointAlignmentLine	lib/jointalign.c	/^void htmlPrintJointAlignmentLine( char *seq1, char *seq2, int start, int end)$/;"	f
htmlPushEarlyHandlers	lib/htmshell.c	/^void htmlPushEarlyHandlers()$/;"	f
htmlRecover	inc/htmshell.h	/^jmp_buf htmlRecover;  \/* Error recovery jump. Exposed for cart's use. *\/$/;"	v
htmlRecover	lib/htmshell.c	/^jmp_buf htmlRecover;$/;"	v
htmlSetBackground	lib/htmshell.c	/^void htmlSetBackground(char *imageFile)$/;"	f
htmlSetBgColor	lib/htmshell.c	/^void htmlSetBgColor(int color)$/;"	f
htmlSetCookie	lib/htmshell.c	/^void htmlSetCookie(char* name, char* value, char* expires, char* path, char* domain, boolean isSecure)$/;"	f
htmlSetFormClass	lib/htmshell.c	/^void htmlSetFormClass(char *formClass)$/;"	f
htmlSetStyle	lib/htmshell.c	/^void htmlSetStyle(char *style)$/;"	f
htmlSetStyleSheet	lib/htmshell.c	/^void htmlSetStyleSheet(char *styleSheet)$/;"	f
htmlSetStyleTheme	lib/htmshell.c	/^void htmlSetStyleTheme(char *style)$/;"	f
htmlSlurpWithCookies	lib/htmlPage.c	/^char *htmlSlurpWithCookies(char *url, struct htmlCookie *cookies)$/;"	f
htmlStart	hg/inc/hgFind.h	/^    void (*htmlStart)(struct hgPosTable *table, FILE *f);   \/* Print preamble to positions. *\/$/;"	m	struct:hgPosTable
htmlStart	lib/htmshell.c	/^void htmlStart(char *title)$/;"	f
htmlStatus	inc/htmlPage.h	/^struct htmlStatus$/;"	s
htmlStatusFree	lib/htmlPage.c	/^void htmlStatusFree(struct htmlStatus **pStatus)$/;"	f
htmlStatusFreeList	lib/htmlPage.c	/^void htmlStatusFreeList(struct htmlStatus **pList)$/;"	f
htmlStatusParse	lib/htmlPage.c	/^struct htmlStatus *htmlStatusParse(char **pText)$/;"	f
htmlStringForDownloadsLink	hg/lib/hui.c	/^static char *htmlStringForDownloadsLink(char *database, struct trackDb *tdb,char *name,boolean nameIsFile)$/;"	f	file:
htmlStyle	lib/htmshell.c	/^static char *htmlStyle =$/;"	v	file:
htmlStyleSheet	lib/htmshell.c	/^static char *htmlStyleSheet = NULL;$/;"	v	file:
htmlStyleTheme	lib/htmshell.c	/^static char *htmlStyleTheme = NULL;$/;"	v	file:
htmlStyleUndecoratedLink	lib/htmshell.c	/^char *htmlStyleUndecoratedLink =$/;"	v
htmlTable	lib/htmlPage.c	/^struct htmlTable $/;"	s	file:
htmlTableRow	lib/htmlPage.c	/^struct htmlTableRow$/;"	s	file:
htmlTag	inc/htmlPage.h	/^struct htmlTag$/;"	s
htmlTagAttributeNeeded	lib/htmlPage.c	/^char *htmlTagAttributeNeeded(struct htmlPage *page, struct htmlTag *tag, char *name)$/;"	f
htmlTagAttributeVal	lib/htmlPage.c	/^char *htmlTagAttributeVal(struct htmlPage *page, struct htmlTag *tag, $/;"	f
htmlTagFree	lib/htmlPage.c	/^void htmlTagFree(struct htmlTag **pTag)$/;"	f
htmlTagFreeList	lib/htmlPage.c	/^void htmlTagFreeList(struct htmlTag **pList)$/;"	f
htmlTagScan	lib/htmlPage.c	/^static struct htmlTag *htmlTagScan(char *html, char *dupe)$/;"	f	file:
htmlText	inc/htmlPage.h	/^    char *htmlText;			\/* Text unparsed after header.  Same mem as fullText. *\/$/;"	m	struct:htmlPage
htmlTextOut	lib/htmshell.c	/^void htmlTextOut(char *s)$/;"	f
htmlTextReplaceTagsWithChar	lib/htmshell.c	/^char *htmlTextReplaceTagsWithChar(char *s, char ch)$/;"	f
htmlTextStripTags	lib/htmshell.c	/^char *htmlTextStripTags(char *s)$/;"	f
htmlVaCenterParagraph	lib/htmshell.c	/^void htmlVaCenterParagraph(char *line, va_list args)$/;"	f
htmlVaParagraph	lib/htmshell.c	/^void htmlVaParagraph(char *line, va_list args)$/;"	f
htmlVaWarn	lib/htmshell.c	/^void htmlVaWarn(char *format, va_list args)$/;"	f
htmlWarnBoxSetup	lib/htmshell.c	/^void htmlWarnBoxSetup(FILE *f)$/;"	f
htmlWarnEndPattern	lib/htmshell.c	/^char *htmlWarnEndPattern()$/;"	f
htmlWarnStartPattern	lib/htmshell.c	/^char *htmlWarnStartPattern()$/;"	f
httpVersion	inc/apacheLog.h	/^    char *httpVersion;  \/* Something like HTTP\/1.1 *\/$/;"	m	struct:apacheAccessLog
hubAddTracks	hg/lib/hubConnect.c	/^struct trackDb *hubAddTracks(struct hubConnectStatus *hub, char *database,$/;"	f
hubCheckForNew	hg/lib/hubConnect.c	/^void hubCheckForNew(char *database, struct cart *cart)$/;"	f
hubCheckGenome	hg/lib/trackHub.c	/^static int hubCheckGenome(struct trackHub *hub, struct trackHubGenome *genome,$/;"	f	file:
hubCheckTrack	hg/lib/trackHub.c	/^static int hubCheckTrack(struct trackHub *hub, struct trackHubGenome *genome, $/;"	f	file:
hubClearStatus	hg/lib/hubConnect.c	/^unsigned hubClearStatus(char *url)$/;"	f
hubConnectAddHubForTrackAndFindTdb	hg/lib/hubConnect.c	/^struct trackDb *hubConnectAddHubForTrackAndFindTdb( char *database, $/;"	f
hubConnectHubsInCart	hg/lib/hubConnect.c	/^struct slName *hubConnectHubsInCart(struct cart *cart)$/;"	f
hubConnectRemakeTrackHubVar	hg/lib/hubConnect.c	/^static void hubConnectRemakeTrackHubVar(struct cart *cart)$/;"	f	file:
hubConnectSkipHubPrefix	hg/lib/hubConnect.c	/^char *hubConnectSkipHubPrefix(char *trackName)$/;"	f
hubConnectStatus	hg/inc/hubConnect.h	/^struct hubConnectStatus$/;"	s
hubConnectStatusForId	hg/lib/hubConnect.c	/^struct hubConnectStatus *hubConnectStatusForId(struct sqlConnection *conn, int id)$/;"	f
hubConnectStatusFree	hg/lib/hubConnect.c	/^void hubConnectStatusFree(struct hubConnectStatus **pHub)$/;"	f
hubConnectStatusFreeList	hg/lib/hubConnect.c	/^void hubConnectStatusFreeList(struct hubConnectStatus **pList)$/;"	f
hubConnectStatusListFromCart	hg/lib/hubConnect.c	/^struct hubConnectStatus *hubConnectStatusListFromCart(struct cart *cart)$/;"	f
hubConnectStatusListFromCartAll	hg/lib/hubConnect.c	/^struct hubConnectStatus *hubConnectStatusListFromCartAll(struct cart *cart)$/;"	f
hubConnectTableExists	hg/lib/hubConnect.c	/^boolean hubConnectTableExists()$/;"	f
hubConnectTrackHubsVarName	hg/inc/hubConnect.h	61;"	d
hubDisconnect	hg/lib/hubConnect.c	/^void hubDisconnect(struct cart *cart, char *url)$/;"	f
hubFindOrAddUrlInStatusTable	hg/lib/hubConnect.c	/^unsigned hubFindOrAddUrlInStatusTable(char *database, struct cart *cart,$/;"	f
hubIdFromCartName	hg/lib/hubConnect.c	/^int hubIdFromCartName(char *cartName)$/;"	f
hubIdFromTrackName	hg/lib/hubConnect.c	/^unsigned hubIdFromTrackName(char *trackName)$/;"	f
hubPublicTableConfVariable	hg/inc/hubConnect.h	13;"	d
hubResetError	hg/lib/hubConnect.c	/^unsigned hubResetError(char *url)$/;"	f
hubStatusTableConfVariable	hg/inc/hubConnect.h	19;"	d
hubStatusTableName	hg/lib/hubConnect.c	/^static char *hubStatusTableName = NULL;$/;"	v	file:
hubTrackPrefix	hg/inc/hubConnect.h	25;"	d
hubUpdateStatus	hg/lib/hubConnect.c	/^void hubUpdateStatus(char *errorMessage, struct hubConnectStatus *hub)$/;"	f
hubUrl	hg/inc/hubConnect.h	/^    char *hubUrl;	\/* URL to hub.ra file. *\/$/;"	m	struct:hubConnectStatus
hugoId	hg/inc/knownMore.h	/^    unsigned hugoId;	\/* HUGO Nomeclature Committee ID or 0 if none *\/$/;"	m	struct:knownMore
hugoMap	hg/inc/knownMore.h	/^    char *hugoMap;	\/* HUGO Map position *\/$/;"	m	struct:knownMore
hugoName	hg/inc/knownMore.h	/^    char *hugoName;	\/* HUGO descriptive name *\/$/;"	m	struct:knownMore
hugoSymbol	hg/inc/knownMore.h	/^    char *hugoSymbol;	\/* HUGO short name *\/$/;"	m	struct:knownMore
humanBand	hg/inc/jaxOrtholog.h	/^    char *humanBand;	\/* Human chromosomal location *\/$/;"	m	struct:jaxOrtholog
humanParalog	hg/inc/humanParalog.h	/^struct humanParalog$/;"	s
humanParalogCommaIn	hg/lib/humanParalog.c	/^struct humanParalog *humanParalogCommaIn(char **pS, struct humanParalog *ret)$/;"	f
humanParalogCommaOut	hg/inc/humanParalog.h	57;"	d
humanParalogFree	hg/lib/humanParalog.c	/^void humanParalogFree(struct humanParalog **pEl)$/;"	f
humanParalogFreeList	hg/lib/humanParalog.c	/^void humanParalogFreeList(struct humanParalog **pList)$/;"	f
humanParalogLoad	hg/lib/humanParalog.c	/^struct humanParalog *humanParalogLoad(char **row)$/;"	f
humanParalogLoadAll	hg/lib/humanParalog.c	/^struct humanParalog *humanParalogLoadAll(char *fileName) $/;"	f
humanParalogLoadWhere	hg/lib/humanParalog.c	/^struct humanParalog *humanParalogLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
humanParalogOutput	hg/lib/humanParalog.c	/^void humanParalogOutput(struct humanParalog *el, FILE *f, char sep, char lastSep) $/;"	f
humanParalogStaticLoad	hg/lib/humanParalog.c	/^void humanParalogStaticLoad(char **row, struct humanParalog *ret)$/;"	f
humanParalogTabOut	hg/inc/humanParalog.h	54;"	d
humanSymbol	hg/inc/jaxOrtholog.h	/^    char *humanSymbol;	\/* Human HUGO symbol *\/$/;"	m	struct:jaxOrtholog
hvGfx	hg/inc/hvGfx.h	/^struct hvGfx$/;"	s
hvGfxAdjX	hg/inc/hvGfx.h	/^INLINE int hvGfxAdjX(struct hvGfx *hvg, int x)$/;"	f
hvGfxAdjXW	hg/inc/hvGfx.h	/^INLINE int hvGfxAdjXW(struct hvGfx *hvg, int x, int width)$/;"	f
hvGfxAdjXX	hg/inc/hvGfx.h	/^INLINE int hvGfxAdjXX(struct hvGfx *hvg, int x1, int *x2Ptr,$/;"	f
hvGfxAlloc	hg/lib/hvGfx.c	/^static struct hvGfx *hvGfxAlloc(struct vGfx *vg)$/;"	f	file:
hvGfxBarbedHorizontalLine	hg/lib/hvGfx.c	/^void hvGfxBarbedHorizontalLine(struct hvGfx *hvg, int x, int y, $/;"	f
hvGfxBox	hg/inc/hvGfx.h	/^INLINE void hvGfxBox(struct hvGfx *hvg, int x, int y, $/;"	f
hvGfxClose	hg/lib/hvGfx.c	/^void hvGfxClose(struct hvGfx **pHvg)$/;"	f
hvGfxColorIxToRgb	hg/inc/hvGfx.h	/^INLINE struct rgbColor hvGfxColorIxToRgb(struct hvGfx *hvg, int colorIx)$/;"	f
hvGfxContrastingColor	hg/inc/hvGfx.h	/^INLINE Color hvGfxContrastingColor(struct hvGfx *hvg, int backgroundIx)$/;"	f
hvGfxDot	hg/inc/hvGfx.h	/^INLINE void hvGfxDot(struct hvGfx *hvg, int x, int y, int colorIx)$/;"	f
hvGfxDrawPoly	hg/inc/hvGfx.h	/^INLINE void hvGfxDrawPoly(struct hvGfx *hvg, struct gfxPoly *poly, Color color, $/;"	f
hvGfxDrawRuler	hg/lib/hvGfx.c	/^void hvGfxDrawRuler(struct hvGfx *hvg, int xOff, int yOff, int height, int width,$/;"	f
hvGfxDrawRulerBumpText	hg/lib/hvGfx.c	/^void hvGfxDrawRulerBumpText(struct hvGfx *hvg, int xOff, int yOff, $/;"	f
hvGfxFillUnder	hg/inc/hvGfx.h	/^INLINE void hvGfxFillUnder(struct hvGfx *hvg, int x1, int y1, int x2, int y2, $/;"	f
hvGfxFindColorIx	hg/inc/hvGfx.h	/^INLINE int hvGfxFindColorIx(struct hvGfx *hvg, int r, int g, int b)$/;"	f
hvGfxFindRgb	hg/inc/hvGfx.h	/^INLINE int hvGfxFindRgb(struct hvGfx *hvg, struct rgbColor *rgb)$/;"	f
hvGfxGetClip	hg/inc/hvGfx.h	/^INLINE void hvGfxGetClip(struct hvGfx *hvg, int *retX, int *retY, int *retWidth, int *retHeight)$/;"	f
hvGfxGetHint	hg/inc/hvGfx.h	/^INLINE char* hvGfxGetHint(struct hvGfx *hvg, char *hint)$/;"	f
hvGfxLine	hg/inc/hvGfx.h	/^INLINE void hvGfxLine(struct hvGfx *hvg, $/;"	f
hvGfxMakeColorGradient	hg/lib/hvGfx.c	/^void hvGfxMakeColorGradient(struct hvGfx *hvg, $/;"	f
hvGfxNextItemButton	hg/lib/hvGfx.c	/^void hvGfxNextItemButton(struct hvGfx *hvg, int x, int y, int w, int h, $/;"	f
hvGfxOpenPng	hg/lib/hvGfx.c	/^struct hvGfx *hvGfxOpenPng(int width, int height, char *fileName, boolean useTransparency)$/;"	f
hvGfxOpenPostScript	hg/lib/hvGfx.c	/^struct hvGfx *hvGfxOpenPostScript(int width, int height, char *fileName)$/;"	f
hvGfxRevPoly	hg/inc/hvGfx.h	/^INLINE void hvGfxRevPoly(struct hvGfx *hvg, struct gfxPoly *poly)$/;"	f
hvGfxSetClip	hg/inc/hvGfx.h	/^INLINE void hvGfxSetClip(struct hvGfx *hvg, int x, int y, int width, int height)$/;"	f
hvGfxSetHint	hg/inc/hvGfx.h	/^INLINE void hvGfxSetHint(struct hvGfx *hvg, char *hint, char *value)$/;"	f
hvGfxSetWriteMode	hg/inc/hvGfx.h	/^INLINE void hvGfxSetWriteMode(struct hvGfx *hvg, int writeMode)$/;"	f
hvGfxText	hg/inc/hvGfx.h	/^INLINE void hvGfxText(struct hvGfx *hvg, int x, int y, int colorIx,$/;"	f
hvGfxTextCentered	hg/inc/hvGfx.h	/^INLINE void hvGfxTextCentered(struct hvGfx *hvg, int x, int y, int width, int height,$/;"	f
hvGfxTextRight	hg/inc/hvGfx.h	/^INLINE void hvGfxTextRight(struct hvGfx *hvg, int x, int y, int width, int height,$/;"	f
hvGfxUnclip	hg/inc/hvGfx.h	/^INLINE void hvGfxUnclip(struct hvGfx *hvg)$/;"	f
hvGfxVerticalSmear	hg/inc/hvGfx.h	/^INLINE void hvGfxVerticalSmear(struct hvGfx *hvg,$/;"	f
hvPrintf	hg/lib/hPrint.c	/^void hvPrintf(char *format, va_list args)$/;"	f
hybes	hg/inc/exprBed.h	/^    char **hybes;	\/* Name of experimental hybridization performed, often name of tissue used *\/$/;"	m	struct:exprBed
hz_ofst	lib/gemfont.h	/^signed char *hz_ofst;  \/* On disk byte offset from beginning of file to hor. offsets *\/$/;"	m	struct:font_hdr
i	inc/mime.h	/^    char *i;                \/* index into buffer, current location *\/$/;"	m	struct:mimeBuf
i	inc/rql.h	/^    int i;$/;"	m	union:rqlVal
iHit	lib/trix.c	/^    struct trixHitPos *iHit;	\/* Current position during an inner iteration. *\/$/;"	m	struct:trixWordResult	typeref:struct:trixWordResult::trixHitPos	file:
id	hg/inc/altGraph.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:altGraph
id	hg/inc/altGraphX.h	/^    unsigned id;	\/* Unique ID. *\/$/;"	m	struct:altGraphX
id	hg/inc/ancientRref.h	/^    char *id;	\/* Unique id for each repeat *\/$/;"	m	struct:ancientRref
id	hg/inc/bedDetail.h	/^    char *id;	\/* ID to bed used in URL to link back *\/$/;"	m	struct:bedDetail
id	hg/inc/cartDb.h	/^    unsigned int id;	\/* Cart ID *\/$/;"	m	struct:cartDb
id	hg/inc/cdsSpec.h	/^    char *id;	\/* unique sequence id *\/$/;"	m	struct:cdsSpec
id	hg/inc/chainView.h	/^    int id;			  \/* ID of chain in file. *\/$/;"	m	struct:chainView
id	hg/inc/chicken13kInfo.h	/^    char *id;	\/* ID of the probe *\/$/;"	m	struct:chicken13kInfo
id	hg/inc/ecAttribute.h	/^    unsigned id;	\/* unique id - autoincrement  *\/$/;"	m	struct:ecAttribute
id	hg/inc/expRecord.h	/^    unsigned id;	\/* internal id of experiment *\/$/;"	m	struct:expRecord
id	hg/inc/fbTables.h	/^    int id;	\/* Allele ID *\/$/;"	m	struct:fbAllele
id	hg/inc/fbTables.h	/^    int id;	\/* Reference ID *\/$/;"	m	struct:fbRef
id	hg/inc/gbExtFile.h	/^    unsigned id;	\/* id *\/$/;"	m	struct:gbExtFile
id	hg/inc/gbSeq.h	/^    unsigned id;	\/* ID\/index *\/$/;"	m	struct:gbSeq
id	hg/inc/geneGraph.h	/^    int id;                    \/* Index into mrnaRefs of supporting mRNA. *\/$/;"	m	struct:ggEvidence
id	hg/inc/ggDbRep.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:altGraph
id	hg/inc/gv.h	/^    char *id;	\/* id for attribute link *\/$/;"	m	struct:gvLink
id	hg/inc/gv.h	/^    char *id;	\/* mutation ID *\/$/;"	m	struct:gvAttr
id	hg/inc/gv.h	/^    char *id;	\/* mutation ID *\/$/;"	m	struct:gvAttrLong
id	hg/inc/gv.h	/^    char *id;	\/* unique ID for this mutation *\/$/;"	m	struct:gv
id	hg/inc/gv.h	/^    char *id;   \/* Added field to hold ID if change name *\/$/;"	m	struct:gvPos
id	hg/inc/hgGene.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:geneFinder
id	hg/inc/hgGene.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:hgGene
id	hg/inc/hgGene.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:hgTranscript
id	hg/inc/hubConnect.h	/^    unsigned id;	\/* Hub ID *\/$/;"	m	struct:hubConnectStatus
id	hg/inc/imageClone.h	/^    unsigned id;	\/* IMAGE cloneID *\/$/;"	m	struct:imageClone
id	hg/inc/itemConf.h	/^    char *id;	\/* Identifier of element *\/$/;"	m	struct:itemConf
id	hg/inc/makeItemsItem.h	/^    unsigned id;	\/* Unique ID for item *\/$/;"	m	struct:makeItemsItem
id	hg/inc/omicia.h	/^    char *id;	\/* id into the omicia composite table *\/$/;"	m	struct:omiciaAttr
id	hg/inc/omicia.h	/^    char *id;	\/* id into the omicia composite table *\/$/;"	m	struct:omiciaLink
id	hg/inc/oreganno.h	/^    char *id;	\/* key into the oreganno table *\/$/;"	m	struct:oregannoAttr
id	hg/inc/oreganno.h	/^    char *id;	\/* key into the oreganno table *\/$/;"	m	struct:oregannoLink
id	hg/inc/oreganno.h	/^    char *id;	\/* unique ID to identify this regulatory region *\/$/;"	m	struct:oreganno
id	hg/inc/oregannoOther.h	/^    char *id;	\/* key into the oregannoOther table *\/$/;"	m	struct:oregannoOtherAttr
id	hg/inc/oregannoOther.h	/^    char *id;	\/* key into the oregannoOther table *\/$/;"	m	struct:oregannoOtherLink
id	hg/inc/oregannoOther.h	/^    char *id;	\/* unique ID to identify this regulatory region *\/$/;"	m	struct:oregannoOther
id	hg/inc/protVar.h	/^    char *id;	\/* id for attribute link *\/$/;"	m	struct:protVarLink
id	hg/inc/protVar.h	/^    char *id;	\/* mutation ID *\/$/;"	m	struct:protVarAttr
id	hg/inc/protVar.h	/^    char *id;	\/* unique ID for this mutation *\/$/;"	m	struct:protVar
id	hg/inc/putaInfo.h	/^    double id[2];	\/* (cds) aligned Identity *\/$/;"	m	struct:putaInfo
id	hg/inc/riken.h	/^    char *id;	\/* Required *\/$/;"	m	struct:rikenCluster
id	hg/inc/riken.h	/^    char *id;	\/* Required *\/$/;"	m	struct:rikenSequence
id	hg/inc/rmskOut.h	/^    char id[2];		\/* '*' or ' '.  I don't know what this means *\/$/;"	m	struct:rmskOut
id	hg/inc/spDb.h	/^    int id;	\/* Database (not SwissProt) ID *\/$/;"	m	struct:spCitation
id	hg/inc/taxonDivision.h	/^    unsigned id;	\/* division id in GenBank taxonomy database *\/$/;"	m	struct:taxonDivision
id	hg/inc/taxonGeneticCode.h	/^    unsigned id;	\/* genetic code id in GenBank taxonomy database *\/$/;"	m	struct:taxonGeneticCode
id	hg/inc/tfbsCons.h	/^    char id[11];	\/* id *\/$/;"	m	struct:tfbsCons
id	hg/inc/tfbsConsFactors.h	/^    char id[26];	\/* SwissProt ID *\/$/;"	m	struct:tfbsConsFactors
id	hg/inc/tfbsConsMap.h	/^    char *id;	\/* TRANSFAC id *\/$/;"	m	struct:tfbsConsMap
id	hg/inc/transMapGene.h	/^    char *id;	\/* unique sequence id *\/$/;"	m	struct:transMapGene
id	hg/inc/transMapSrc.h	/^    char *id;	\/* id of source alignment *\/$/;"	m	struct:transMapSrc
id	hg/inc/variome.h	/^    unsigned id;	\/* auto-increment item ID *\/$/;"	m	struct:variome
id	hg/inc/wikiTrack.h	/^    unsigned id;	\/* auto-increment item ID *\/$/;"	m	struct:wikiTrack
id	hg/lib/hdb.c	/^    HGID id;                    \/* Id in extFile table. *\/$/;"	m	struct:largeSeqFile	file:
id	inc/bbiFile.h	/^    bits32 id;		\/* Chromosome ID - a small number usually *\/$/;"	m	struct:bbiChromInfo
id	inc/bbiFile.h	/^    bits32 id;	\/* Unique ID for chromosome. *\/$/;"	m	struct:bbiChromUsage
id	inc/chain.h	/^    int id;			  \/* ID of chain in file. *\/$/;"	m	struct:chain
id	inc/ens.h	/^    char *id;				  \/* Ensemble ID with many zeroes. *\/$/;"	m	struct:ensGene
id	inc/ens.h	/^    char *id;				\/* Ensemble ID (not allocated here). *\/$/;"	m	struct:ensExon
id	inc/ens.h	/^    char *id;				\/* Ensemble ID. *\/$/;"	m	struct:ensTranscript
id	inc/ens.h	/^    int id;			\/* Unique id for this feature type. *\/$/;"	m	struct:ensAnalysis
id	inc/gff.h	/^    unsigned int id;   \/* Database ID (or just 0) *\/$/;"	m	struct:gffSource
id	inc/gff3.h	/^    char *id;  \/* Indicates the name of the feature.  IDs must be unique$/;"	m	struct:gff3Ann
id	inc/hgGene.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:geneFinder
id	inc/hgGene.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:hgGene
id	inc/hgGene.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:hgTranscript
id	inc/hgap.h	/^    HGID id;		        \/* HGAP ID. *\/$/;"	m	struct:hgNest
id	inc/hgap.h	/^    HGID id;		      \/* HGAP ID. *\/$/;"	m	struct:hgBac
id	inc/hgap.h	/^    HGID id;		      \/* HGAP ID. *\/$/;"	m	struct:hgContig
id	inc/maDbRep.h	/^    unsigned id;	\/* Unique ID *\/$/;"	m	struct:mrnaAli
id	inc/maf.h	/^    char *id;     \/\/ identifiers$/;"	m	struct:mafRegDef
id	inc/rudp.h	/^    bits32 id;		\/* Message id.  Returned with ack. *\/$/;"	m	struct:rudpHeader
id	inc/unfin.h	/^    char *id;	       \/* Ensemble ID. (Not allocated here.) *\/$/;"	m	struct:contigTree
id	inc/vcf.h	/^    char *id;			\/\/ Name of individual\/sample (pointer to vcfFile genotypeIds) or .$/;"	m	struct:vcfGenotype
id	lib/gemfont.h	/^WORD	id;			\/* some random number, doesnt matter *\/$/;"	m	struct:font_hdr
ident	hg/inc/lowelabPfamHit.h	/^    unsigned ident;	\/* Percent identity of Pfam-A seq with this hit (should be >90%) *\/$/;"	m	struct:lowelabPfamHits
ident	hg/inc/transMapSrc.h	/^    float ident;	\/* identity *\/$/;"	m	struct:transMapSrc
ident	hg/lib/lowelabPfamHit.h	/^    unsigned ident;	\/* Percent identity of Pfam-A seq with this hit (should be >90%) *\/$/;"	m	struct:lowelabPfamHits
ident	inc/phyloTree.h	/^    struct phyloName *ident;		\/* the name and branch length *\/$/;"	m	struct:phyloTree	typeref:struct:phyloTree::phyloName
identNo	hg/inc/bacEndAlias.h	/^    unsigned identNo;	\/* Identification number of BAC End *\/$/;"	m	struct:bacEndAlias
identNo	hg/inc/mapSts.h	/^    unsigned identNo;	\/* Identification number of STS *\/$/;"	m	struct:mapSts
identNo	hg/inc/stsAlias.h	/^    unsigned identNo;	\/* Identification number of STS marker *\/$/;"	m	struct:stsAlias
identNo	hg/inc/stsInfo.h	/^    unsigned identNo;	\/* UCSC identification number *\/$/;"	m	struct:stsInfo
identNo	hg/inc/stsInfo2.h	/^    unsigned identNo;	\/* UCSC identification number *\/$/;"	m	struct:stsInfo2
identNo	hg/inc/stsInfoMouse.h	/^    unsigned identNo;	\/* UCSC identification number *\/$/;"	m	struct:stsInfoMouse
identNo	hg/inc/stsInfoMouseNew.h	/^    unsigned identNo;	\/* UCSC identification number *\/$/;"	m	struct:stsInfoMouseNew
identNo	hg/inc/stsInfoRat.h	/^    unsigned identNo;	\/* UCSC identification number *\/$/;"	m	struct:stsInfoRat
identNo	hg/inc/stsMap.h	/^    unsigned identNo;	\/* Identification number of STS *\/$/;"	m	struct:stsMap
identNo	hg/inc/stsMapMouse.h	/^    unsigned identNo;	\/* UCSC Id No. *\/$/;"	m	struct:stsMapMouse
identNo	hg/inc/stsMapMouseNew.h	/^    unsigned identNo;	\/* Identification number of STS *\/$/;"	m	struct:stsMapMouseNew
identNo	hg/inc/stsMapRat.h	/^    unsigned identNo;	\/* Identification number of STS *\/$/;"	m	struct:stsMapRat
identNo	hg/inc/stsMarker.h	/^    unsigned identNo;	\/* Identification number of STS *\/$/;"	m	struct:stsMarker
identifier	hg/inc/joiner.h	/^    struct joinerSet *identifier;	\/* Identifier this is based on,$/;"	m	struct:joinerPair	typeref:struct:joinerPair::joinerSet
identifierInArray	hg/lib/joiner.c	/^static boolean identifierInArray(struct joinerSet *identifier, $/;"	f	file:
identifierStack	hg/lib/joiner.c	/^static struct joinerSet *identifierStack[4];	\/* Help keep search from looping. *\/$/;"	v	typeref:struct:joinerSet	file:
identity	hg/inc/blastTab.h	/^    float identity;	\/* Percent identity *\/$/;"	m	struct:blastTab
ids	hg/inc/microarray.h	/^    int *ids;		\/* Id's (indexes) of experiments to median. *\/$/;"	m	struct:maMedSpec
idx	inc/hash.h	/^    int idx;                \/* current index in hash *\/$/;"	m	struct:hashCookie
igenicsTarget	hg/inc/rnaHybridization.h	/^    char *igenicsTarget;	\/* intergenics name for target or empty *\/$/;"	m	struct:rnaHybridization
ignoreBrowserLines	hg/inc/customPp.h	/^    boolean ignoreBrowserLines;  \/* Flag to suppress removal of browser lines *\/$/;"	m	struct:customPp
ignoreGxfLine	hg/lib/genePred.c	/^static boolean ignoreGxfLine(struct gffLine *gl, boolean isGtf)$/;"	f	file:
ihc	hg/inc/ispyTables.h	/^struct ihc$/;"	s
ihcCommaIn	hg/lib/ispyTables.c	/^struct ihc *ihcCommaIn(char **pS, struct ihc *ret)$/;"	f
ihcCommaOut	hg/inc/ispyTables.h	921;"	d
ihcFree	hg/lib/ispyTables.c	/^void ihcFree(struct ihc **pEl)$/;"	f
ihcFreeList	hg/lib/ispyTables.c	/^void ihcFreeList(struct ihc **pList)$/;"	f
ihcLoadAll	hg/lib/ispyTables.c	/^struct ihc *ihcLoadAll(char *fileName) $/;"	f
ihcLoadAllByChar	hg/lib/ispyTables.c	/^struct ihc *ihcLoadAllByChar(char *fileName, char chopper) $/;"	f
ihcLoadAllByTab	hg/inc/ispyTables.h	874;"	d
ihcLoadByQuery	hg/lib/ispyTables.c	/^struct ihc *ihcLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
ihcLoadWithNull	hg/lib/ispyTables.c	/^struct ihc *ihcLoadWithNull(char **row)$/;"	f
ihcOutput	hg/lib/ispyTables.c	/^void ihcOutput(struct ihc *el, FILE *f, char sep, char lastSep) $/;"	f
ihcSaveToDb	hg/lib/ispyTables.c	/^void ihcSaveToDb(struct sqlConnection *conn, struct ihc *el, char *tableName, int updateSize)$/;"	f
ihcSaveToDbEscaped	hg/lib/ispyTables.c	/^void ihcSaveToDbEscaped(struct sqlConnection *conn, struct ihc *el, char *tableName, int updateSize)$/;"	f
ihcStaticLoadWithNull	hg/lib/ispyTables.c	/^void ihcStaticLoadWithNull(char **row, struct ihc *ret)$/;"	f
ihcTabOut	hg/inc/ispyTables.h	918;"	d
illumina1MTable	hg/lib/chromGraphFactory.c	26;"	d	file:
illumina300Table	hg/lib/chromGraphFactory.c	23;"	d	file:
illumina550Table	hg/lib/chromGraphFactory.c	24;"	d	file:
illumina650Table	hg/lib/chromGraphFactory.c	25;"	d	file:
imageClone	hg/inc/imageClone.h	/^struct imageClone$/;"	s
imageCloneCommaIn	hg/lib/imageClone.c	/^struct imageClone *imageCloneCommaIn(char **pS, struct imageClone *ret)$/;"	f
imageCloneCommaOut	hg/inc/imageClone.h	49;"	d
imageCloneFree	hg/lib/imageClone.c	/^void imageCloneFree(struct imageClone **pEl)$/;"	f
imageCloneFreeList	hg/lib/imageClone.c	/^void imageCloneFreeList(struct imageClone **pList)$/;"	f
imageCloneLoad	hg/lib/imageClone.c	/^struct imageClone *imageCloneLoad(char **row)$/;"	f
imageCloneLoadAll	hg/lib/imageClone.c	/^struct imageClone *imageCloneLoadAll(char *fileName) $/;"	f
imageCloneOutput	hg/lib/imageClone.c	/^void imageCloneOutput(struct imageClone *el, FILE *f, char sep, char lastSep) $/;"	f
imageCloneTabOut	hg/inc/imageClone.h	46;"	d
imageCount	hg/inc/bdgpExprLink.h	/^    int imageCount;	\/* Number of images for this gene *\/$/;"	m	struct:bdgpExprLink
in	inc/subText.h	/^    char *in;			\/* source side of substitution *\/$/;"	m	struct:subText
in	inc/xp.h	/^    char *in;				\/* Next character to parse. *\/$/;"	m	struct:xp
in	lib/boxClump.c	/^    struct boxIn *in;		 \/* Input box position. *\/$/;"	m	struct:box	typeref:struct:box::boxIn	file:
in	lib/dgRange.c	/^   struct bfVertex *in;    \/* Connecting node. *\/$/;"	m	struct:bfEdge	typeref:struct:bfEdge::bfVertex	file:
inBroiler	hg/inc/bgiSnp.h	/^    char inBroiler[5];	\/* SNP found in Broiler strain? yes, no or n\/a if not covered *\/$/;"	m	struct:bgiSnp
inBuf	inc/xp.h	/^    char inBuf[16*1024];		\/* Text input buffer. *\/$/;"	m	struct:xp
inBufEnd	inc/xp.h	/^    char *inBufEnd;			\/* Pointer to end of input buffer. *\/$/;"	m	struct:xp
inCache	hg/lib/jksql.c	/^    boolean inCache;                \/* debugging flag to indicate it's in a cache *\/$/;"	m	struct:sqlConnection	file:
inLayer	hg/inc/bgiSnp.h	/^    char inLayer[5];	\/* SNP found in Layer strain? yes, no or n\/a if not covered *\/$/;"	m	struct:bgiSnp
inLine	inc/seqOut.h	/^    int inWord, inLine; \/* Position in word and line. *\/$/;"	m	struct:cfm
inReuse	hg/inc/customPp.h	/^    struct slName *inReuse;	 \/* Line in process of being reused. *\/$/;"	m	struct:customPp	typeref:struct:customPp::slName
inRoute	hg/lib/joiner.c	/^static boolean inRoute(struct joinerPair *routeList, struct joinerDtf *dtf)$/;"	f	file:
inSilkie	hg/inc/bgiSnp.h	/^    char inSilkie[5];	\/* SNP found in Silkie strain? yes, no or n\/a if not covered *\/$/;"	m	struct:bgiSnp
inSize	inc/subText.h	/^    int inSize;			\/* length of in string *\/$/;"	m	struct:subText
inTd	lib/htmlPage.c	/^    int inTd;$/;"	m	struct:htmlTableRow	file:
inUse	hg/lib/jksql.c	/^    boolean inUse;                   \/* is this in use? *\/$/;"	m	struct:sqlConnCacheEntry	file:
inWeb	hg/lib/cart.c	/^static boolean inWeb = FALSE;$/;"	v	file:
inWord	inc/seqOut.h	/^    int inWord, inLine; \/* Position in word and line. *\/$/;"	m	struct:cfm
incCounterFile	lib/obscure.c	/^long incCounterFile(char *fileName)$/;"	f
includeQuotes	lib/kxTok.c	/^boolean includeQuotes = FALSE;$/;"	v
includeTargetFile	inc/genoFind.h	/^    boolean includeTargetFile;	\/* Prefix file: to target sequence name. *\/$/;"	m	struct:gfOutput
included	inc/annoColumn.h	/^    boolean included;$/;"	m	struct:annoColumn
incomplete_terminal_codon_variant	hg/inc/soterm.h	/^    incomplete_terminal_codon_variant=1626,$/;"	e	enum:__anon11
incrFrame	hg/lib/genePred.c	/^static int incrFrame(int frame, int amt)$/;"	f	file:
indelAppropriate	hg/lib/hui.c	/^static boolean indelAppropriate(struct trackDb *tdb)$/;"	f	file:
indelEnabled	hg/lib/hui.c	/^void indelEnabled(struct cart *cart, struct trackDb *tdb, float basesPerPixel,$/;"	f
indelEnabledByName	hg/lib/hui.c	/^static void indelEnabledByName(struct cart *cart, struct trackDb *tdb, char *name,$/;"	f	file:
indelN	hg/inc/genomicSuperDups.h	/^    unsigned indelN;	\/* number of indels *\/$/;"	m	struct:genomicSuperDups
indelS	hg/inc/genomicSuperDups.h	/^    unsigned indelS;	\/* indel spaces *\/$/;"	m	struct:genomicSuperDups
indelShowOptions	hg/lib/hui.c	/^void indelShowOptions(struct cart *cart, struct trackDb *tdb)$/;"	f
indelShowOptionsWithName	hg/lib/hui.c	/^static void indelShowOptionsWithName(struct cart *cart, struct trackDb *tdb,char *name)$/;"	f	file:
indentIfNeeded	hg/lib/hui.c	/^static void indentIfNeeded(hierarchy_t*hierarchy,membership_t *membership)$/;"	f	file:
indentStr	hg/lib/jksql.c	/^static char *indentStr = "                                                       ";$/;"	v	file:
indents	hg/lib/hui.c	/^    int*  indents;$/;"	m	struct:_hierarchy	file:
index	hg/lib/altGraphX.c	/^    int index;$/;"	m	struct:agVertSortable	file:
index13	inc/itsa.h	/^    bits32 *index13;	\/* Look up the first 13 bases of the query sequence here to find the corresponding$/;"	m	struct:itsa
indexIx	inc/fof.h	/^    int indexIx;          \/* Position within index. *\/$/;"	m	struct:fofPos
indexLength	hg/inc/mysqlTableStatus.h	/^    int indexLength;	\/* Length of index file *\/$/;"	m	struct:mysqlTableStatus
indexLength	hg/inc/tableStatus.h	/^    long long indexLength;	\/* Length of index in bytes *\/$/;"	m	struct:tableStatus
indexList	inc/twoBit.h	/^    struct twoBitIndex *indexList;	\/* List of sequence. *\/$/;"	m	struct:twoBitFile	typeref:struct:twoBitFile::twoBitIndex
indexNodeSize	lib/cirTree.c	/^int indexNodeSize(int blockSize)$/;"	f
indexOf	hg/inc/joiner.h	/^    boolean indexOf;		\/* True if id is index in this list. *\/$/;"	m	struct:joinerField
indexOffset	inc/bbiFile.h	/^    bits64 indexOffset;			\/* Offset of index for this level in file. *\/$/;"	m	struct:bbiZoomLevel
indexSlotSize	lib/cirTree.c	32;"	d	file:
indexString	lib/psl.c	/^static char *indexString = $/;"	v	file:
indirectString	hg/lib/bioImage.c	/^static char *indirectString(struct sqlConnection *conn, int id, char *table, char *valField)$/;"	f	file:
indirectString	hg/lib/genePix.c	/^static char *indirectString(struct sqlConnection *conn, int id, char *table, char *valField)$/;"	f	file:
individuals	hg/inc/cnpSebat.h	/^    unsigned individuals;	\/* Number of individuals *\/$/;"	m	struct:cnpSebat
info	hg/inc/cogsxra.h	/^    char *info;	\/* COG info *\/$/;"	m	struct:COGXra
info	hg/inc/geneCheckDetails.h	/^    char *info;	\/* additional information  *\/$/;"	m	struct:geneCheckDetails
info	hg/inc/tigrOperon.h	/^    char *info;	\/* information *\/$/;"	m	struct:tigrOperon
infoCount	inc/vcf.h	/^    int infoCount;		\/\/ Number of components named in FORMAT column$/;"	m	struct:vcfGenotype
infoCount	inc/vcf.h	/^    int infoCount;		\/\/ Number of components of INFO column$/;"	m	struct:vcfRecord
infoDefs	inc/vcf.h	/^    struct vcfInfoDef *infoDefs;	\/\/ Header's definitions of INFO column components$/;"	m	struct:vcfFile	typeref:struct:vcfFile::vcfInfoDef
infoElements	inc/vcf.h	/^    struct vcfInfoElement *infoElements;	\/\/ Array of INFO column components$/;"	m	struct:vcfRecord	typeref:struct:vcfRecord::vcfInfoElement
infoElements	inc/vcf.h	/^    struct vcfInfoElement *infoElements;	\/\/ Array of info components for this genotype call$/;"	m	struct:vcfGenotype	typeref:struct:vcfGenotype::vcfInfoElement
infoOrFormatRegex	lib/vcf.c	/^static const char *infoOrFormatRegex =$/;"	v	file:
infoOrFormatRegex3_3	lib/vcf.c	/^static const char *infoOrFormatRegex3_3 =$/;"	v	file:
inframe_deletion	hg/inc/soterm.h	/^    inframe_deletion=1651,$/;"	e	enum:__anon11
inframe_insertion	hg/inc/soterm.h	/^    inframe_insertion=1652,$/;"	e	enum:__anon11
inheritFieldsFromParents	hg/lib/hdb.c	/^static void inheritFieldsFromParents(struct trackDb *tdb, struct trackDb *parent)$/;"	f	file:
inheritFromSuper	hg/lib/hdb.c	/^static void inheritFromSuper(struct trackDb *subtrackTdb,$/;"	f	file:
inheritedDiv	hg/inc/taxonNode.h	/^    unsigned inheritedDiv;	\/* 1 if node inherits division from parent *\/$/;"	m	struct:taxonNode
inheritedGC	hg/inc/taxonNode.h	/^    unsigned inheritedGC;	\/* 1 if node inherits genetic code from parent *\/$/;"	m	struct:taxonNode
inheritedMitoGC	hg/inc/taxonNode.h	/^    unsigned inheritedMitoGC;	\/* 1 if node inherits mitochondrial gencode from parent *\/$/;"	m	struct:taxonNode
initAaVal	lib/dnautil.c	/^static void initAaVal()$/;"	f	file:
initCgiInput	lib/cheapcgi.c	/^static void initCgiInput()$/;"	f	file:
initConfig	hg/lib/hgConfig.c	/^static void initConfig()$/;"	f	file:
initMem	lib/snofmake.c	/^static void initMem()$/;"	f	file:
initMimeBuf	lib/mime.c	/^struct mimeBuf * initMimeBuf(int d)$/;"	f
initNode	lib/hacTree.c	/^INLINE void initNode(struct hacTree *node, const struct hacTree *left, const struct hacTree *right,$/;"	f
initNtChars	lib/dnautil.c	/^static void initNtChars()$/;"	f	file:
initNtCompTable	lib/dnautil.c	/^static void initNtCompTable()$/;"	f	file:
initNtLookup	jkOwnLib/genoFind.c	/^static void initNtLookup()$/;"	f	file:
initNtMixedCaseChars	lib/dnautil.c	/^static void initNtMixedCaseChars()$/;"	f	file:
initNtVal	lib/dnautil.c	/^static void initNtVal()$/;"	f	file:
initSample	hg/inc/gwasCatalog.h	/^    char *initSample;	\/* Initial sample size *\/$/;"	m	struct:gwasCatalog
initShortNum	hg/lib/qaSeq.c	/^static void initShortNum()$/;"	f	file:
initSigHandlers	lib/cheapcgi.c	/^void initSigHandlers(boolean dumpStack)$/;"	f
initUnhexTable	lib/trix.c	/^static void initUnhexTable()$/;"	f	file:
initVcfSpecGtFormatDefs	lib/vcf.c	/^static void initVcfSpecGtFormatDefs()$/;"	f	file:
initVcfSpecInfoDefs	lib/vcf.c	/^static void initVcfSpecInfoDefs()$/;"	f	file:
initWormDnaMatchScores	jkOwnLib/crudeali.c	/^void initWormDnaMatchScores()$/;"	f
init_exp	lib/gifdecomp.c	/^static WORD init_exp(size)$/;"	f	file:
init_table	lib/gifcomp.c	/^static void init_table(short min_code_size)$/;"	f	file:
initialEntityHash	lib/dtdParse.c	/^static struct hash *initialEntityHash()$/;"	f	file:
initialize	inc/annoFormatter.h	/^    void (*initialize)(struct annoFormatter *self, struct annoGratorQuery *query);$/;"	m	struct:annoFormatter
initiator_codon_variant	hg/inc/soterm.h	/^    initiator_codon_variant=1582,$/;"	e	enum:__anon11
inittedBitsInByte	lib/bits.c	/^static boolean inittedBitsInByte = FALSE;$/;"	v	file:
inittedCompTable	lib/dnautil.c	/^static boolean inittedCompTable = FALSE;$/;"	v	file:
inittedNtVal	lib/dnautil.c	/^static boolean inittedNtVal = FALSE;$/;"	v	file:
inputHash	lib/cheapcgi.c	/^static struct hash *inputHash = NULL;$/;"	v	typeref:struct:hash	file:
inputList	lib/cheapcgi.c	/^static struct cgiVar *inputList = NULL;$/;"	v	typeref:struct:cgiVar	file:
inputSize	lib/cheapcgi.c	/^static unsigned long inputSize;$/;"	v	file:
inputString	lib/cheapcgi.c	/^static char *inputString = NULL;$/;"	v	file:
insertCount	inc/blastParse.h	/^    int insertCount;                    \/* Number of inserts. *\/$/;"	m	struct:blastBlock
insertFromCodingCost	jkOwnLib/xensmall.c	/^static int insertFromCodingCost;$/;"	v	file:
insertFromHiFiCost	jkOwnLib/xensmall.c	/^static int insertFromHiFiCost;$/;"	v	file:
insertFromLoFiCost	jkOwnLib/xensmall.c	/^static int insertFromLoFiCost;$/;"	v	file:
insertHubUrlInStatus	hg/lib/hubConnect.c	/^static void insertHubUrlInStatus(char *url)$/;"	f	file:
insertLinearGapHtml	hg/lib/hVarSubst.c	/^static void insertLinearGapHtml(struct trackDb *tdb, char *linearGap,$/;"	f	file:
insertList	hg/inc/chromInserts.h	/^    struct bigInsert *insertList; \/* List of contigs to insert before. *\/$/;"	m	struct:chromInserts	typeref:struct:chromInserts::bigInsert
insertMatrixHtml	hg/lib/hVarSubst.c	/^static void insertMatrixHtml(struct trackDb *tdb, char *matrix,$/;"	f	file:
instance	hg/inc/atomDb.h	/^    unsigned instance;	\/* instance number *\/$/;"	m	struct:atom
intAbs	lib/common.c	/^int intAbs(int a)$/;"	f
intCastOp	lib/rqlParse.c	/^static enum rqlOp intCastOp(enum rqlType oldType)$/;"	f	file:
intCmp	lib/common.c	/^static int intCmp(const void *va, const void *vb)$/;"	f	file:
intExp	lib/intExp.c	/^int intExp(char *text)$/;"	f
intMedian	lib/common.c	/^int intMedian(int count, int *array)$/;"	f
intName	hg/inc/bacCloneXRef.h	/^    char *intName;	\/* Internal Sanger FPC name *\/$/;"	m	struct:bacCloneXRef
intSort	lib/common.c	/^void intSort(int count, int *array)$/;"	f
intToPt	lib/obscure.c	/^void *intToPt(int i)$/;"	f
intVal	inc/intValTree.h	/^struct intVal$/;"	s
intValCmp	lib/intValTree.c	/^int intValCmp(void *va, void *vb)$/;"	f
intValTreeAdd	lib/intValTree.c	/^struct intVal *intValTreeAdd(struct rbTree *tree, int key, void *val)$/;"	f
intValTreeFind	lib/intValTree.c	/^void *intValTreeFind(struct rbTree *tree, int key)$/;"	f
intValTreeFree	inc/intValTree.h	14;"	d
intValTreeKeys	lib/intValTree.c	/^int *intValTreeKeys(struct rbTree *tree)$/;"	f
intValTreeLookup	lib/intValTree.c	/^struct intVal *intValTreeLookup(struct rbTree *tree, int key)$/;"	f
intValTreeMustFind	lib/intValTree.c	/^void *intValTreeMustFind(struct rbTree *tree, int key)$/;"	f
intValTreeNew	lib/intValTree.c	/^struct rbTree *intValTreeNew()$/;"	f
intValTreeRemove	lib/intValTree.c	/^struct intVal *intValTreeRemove(struct rbTree *tree, int key)$/;"	f
intValTreeUpdate	lib/intValTree.c	/^struct intVal *intValTreeUpdate(struct rbTree *tree, int key, void *val)$/;"	f
integrate	inc/annoGrator.h	/^    struct annoRow *(*integrate)(struct annoGrator *self, struct annoRow *primaryRow,$/;"	m	struct:annoGrator	typeref:struct:annoGrator::integrate
integrators	inc/annoGratorQuery.h	/^    struct annoGrator *integrators;	\/\/ Annotations & methods for integrating w\/primary$/;"	m	struct:annoGratorQuery	typeref:struct:annoGratorQuery::annoGrator
intergenic_variant	hg/inc/soterm.h	/^    intergenic_variant=1628,$/;"	e	enum:__anon11
internalErr	inc/common.h	272;"	d
internetDottedQuadToIp	lib/internet.c	/^boolean internetDottedQuadToIp(char *dottedQuad, bits32 *retIp)$/;"	f
internetFillInAddress	lib/internet.c	/^boolean internetFillInAddress(char *hostName, int port, struct sockaddr_in *address)$/;"	f
internetHostIp	lib/internet.c	/^bits32 internetHostIp(char *hostName)$/;"	f
internetIpInSubnet	lib/internet.c	/^boolean internetIpInSubnet(unsigned char unpackedIp[4], unsigned char subnet[4])$/;"	f
internetIpToDottedQuad	lib/internet.c	/^boolean internetIpToDottedQuad(bits32 ip, char dottedQuad[17])$/;"	f
internetIsDottedQuad	lib/internet.c	/^boolean internetIsDottedQuad(char *s)$/;"	f
internetParseDottedQuad	lib/internet.c	/^void internetParseDottedQuad(char *dottedQuad, unsigned char quad[4])$/;"	f
internetUnpackIp	lib/internet.c	/^void internetUnpackIp(bits32 packed, unsigned char unpacked[4])$/;"	f
interpolate	lib/gapCalc.c	/^static int interpolate(int x, int *s, double *v, int sCount)$/;"	f	file:
interpolatedHue	lib/rainbow.c	/^static struct rgbColor interpolatedHue(struct rgbColor *table, int tableSize, double pos)$/;"	f	file:
intron	hg/inc/gbRNAs.h	/^    char *intron;	\/* Coordinates of intron in RNA gene *\/$/;"	m	struct:gbRNAs
intron	hg/inc/soterm.h	/^	    } intron;$/;"	m	union:soCall::__anon12	typeref:struct:soCall::__anon12::__anon13
intron	hg/inc/tRNAs.h	/^    char *intron;	\/* Coordinates for intron *\/$/;"	m	struct:tRNAs
intronCount	hg/inc/pseudoGeneLink.h	/^    unsigned intronCount;	\/* number of introns in pseudogene *\/$/;"	m	struct:pseudoGeneLink
intronCount	hg/inc/retroMrnaInfo.h	/^    unsigned intronCount;	\/* number of introns in pseudogene col25 *\/$/;"	m	struct:retroMrnaInfo
intronCount	hg/inc/ucscRetroInfo.h	/^    unsigned intronCount;	\/* number of introns in pseudogene col25 *\/$/;"	m	struct:ucscRetroInfo
intronId	inc/gff.h	/^    char *intronId;       \/* intron_id in GTF, NULL in GFF. Not allocated here. *\/$/;"	m	struct:gffLine
intronNumber	hg/inc/soterm.h	/^	    uint intronNumber;$/;"	m	struct:soCall::__anon12::__anon13
intronOrientation	hg/inc/estOrientInfo.h	/^    short intronOrientation;	\/* Orientation of introns with respect to EST *\/$/;"	m	struct:estOrientInfo
intronOrientation	hg/inc/rikenBest.h	/^    int intronOrientation;	\/* +1 for each GT\/AG intron, -1 for each CT\/AC *\/$/;"	m	struct:rikenBest
intronOrientation	lib/dnautil.c	/^int intronOrientation(DNA *iStart, DNA *iEnd)$/;"	f
intronOrientationMinSize	lib/dnautil.c	/^int intronOrientationMinSize(DNA *iStart, DNA *iEnd, int minIntronSize)$/;"	f
intronQualifier	hg/lib/featureBits.c	/^static boolean intronQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
intronStatus	inc/gff.h	/^    char *intronStatus;   \/* intron status. Not allocated here. *\/$/;"	m	struct:gffLine
intron_variant	hg/inc/soterm.h	/^    intron_variant=1627,$/;"	e	enum:__anon11
introns	inc/oldGff.h	/^    GffIntron *introns;$/;"	m	struct:gffGene
invLog4	lib/seqStats.c	10;"	d	file:
invSlog	lib/slog.c	/^double invSlog(int scaledLog)$/;"	f
invSlogScale	lib/slog.c	/^double invSlogScale = 0.0001220703125; \/* Conver back to floating point with this. *\/$/;"	v
ip	inc/apacheLog.h	/^    char *ip;		\/* IP Address: dotted quad of numbers, or xxx.com. *\/$/;"	m	struct:apacheAccessLog
iphase	lib/gifread.c	/^static char iphase;$/;"	v	file:
ipr	hg/inc/bgiGeneInfo.h	/^    char *ipr;	\/* semicolon-sep list of IPR numeric IDs and comments *\/$/;"	m	struct:bgiGeneInfo
isAbbrevScientificName	hg/lib/hVarSubst.c	/^static boolean isAbbrevScientificName(char *name)$/;"	f	file:
isAdult	inc/wormdna.h	/^    boolean isAdult;            \/* True if derived from adult culture. *\/$/;"	m	struct:wormCdnaInfo
isAllAlpha	lib/wormdna.c	/^static boolean isAllAlpha(char *s)$/;"	f	file:
isAllDashes	lib/blastParse.c	/^static boolean isAllDashes(char *s)$/;"	f	file:
isAllDigit	lib/wormdna.c	/^static boolean isAllDigit(char *s)$/;"	f	file:
isAllDigits	hg/lib/hdb.c	/^INLINE boolean isAllDigits(char *str)$/;"	f
isAllDigits	lib/blastParse.c	/^static boolean isAllDigits(char *s)$/;"	f	file:
isAllDna	lib/dnautil.c	/^boolean isAllDna(char *poly, int size)$/;"	f
isAllLower	lib/dtdParse.c	/^static boolean isAllLower(char *s)$/;"	f	file:
isAllSameChar	hg/lib/hgBam.c	/^static boolean isAllSameChar(char *s, int size, char c)$/;"	f	file:
isAllUpper	lib/dtdParse.c	/^static boolean isAllUpper(char *s)$/;"	f	file:
isArray	inc/asParse.h	/^    bool isArray;                  \/* TRUE if an array. *\/$/;"	m	struct:asColumn
isBigWig	lib/bwgQuery.c	/^boolean isBigWig(char *fileName)$/;"	f
isBrowserCgi	hg/lib/hgConfig.c	/^static boolean isBrowserCgi()$/;"	f	file:
isCds	hg/lib/genePred.c	/^static boolean isCds(char *feat)$/;"	f	file:
isComplete	jkOwnLib/xenbig.c	/^    boolean isComplete;$/;"	m	struct:contig	file:
isContigOrTandem	lib/maf.c	/^boolean isContigOrTandem(char status)$/;"	f
isCustomTrack	hg/lib/customTrack.c	/^boolean isCustomTrack(char *track)$/;"	f
isDatabaseVar	hg/lib/hVarSubst.c	/^static boolean isDatabaseVar(char *varBase)$/;"	f	file:
isDefaultTrack	hg/lib/customTrack.c	/^static boolean isDefaultTrack(struct customTrack *ct)$/;"	f	file:
isDelChar	lib/psl.c	/^static boolean isDelChar(char c)$/;"	f	file:
isDependency	hg/inc/joiner.h	/^    boolean isDependency;	\/* Primary key update forces full update? *\/$/;"	m	struct:joinerSet
isDir	inc/portable.h	/^    bool isDir;		\/* True if file is a directory. *\/$/;"	m	struct:fileInfo
isDna	lib/dnautil.c	/^boolean isDna(char *poly, int size)$/;"	f
isDup	inc/phyloTree.h	/^    bool isDup;				\/* is this a duplication node *\/$/;"	m	struct:phyloTree
isEmbryonic	inc/cda.h	/^    UBYTE isEmbryonic;$/;"	m	struct:cdaAli
isEmbryonic	inc/wormdna.h	/^    boolean isEmbryonic;        \/* True if derived from embryo culture. *\/$/;"	m	struct:wormCdnaInfo
isEmpty	inc/common.h	745;"	d
isEndVertice	hg/lib/altGraph.c	/^static boolean isEndVertice(bool **em, int vertexCount, int vertice, $/;"	f	file:
isEndXVertice	hg/lib/altGraphX.c	/^static boolean isEndXVertice(bool **em, int vertexCount, int vertice, $/;"	f	file:
isErrAbortInProgress	lib/errabort.c	/^boolean isErrAbortInProgress() $/;"	f
isEst	inc/maDbRep.h	/^    unsigned char isEst;	\/* True if an EST. *\/$/;"	m	struct:mrnaAli
isExclude	inc/annoFilter.h	/^    boolean isExclude;		\/\/ True if we are excluding items that pass, false if including.$/;"	m	struct:annoFilter
isExon	hg/lib/genePred.c	/^static boolean isExon(char *feat, boolean isGtf, char *exonSelectWord)$/;"	f	file:
isExonEnd	hg/inc/mafFrames.h	/^    unsigned char isExonEnd;	\/* does this end the CDS portion of an exon? *\/$/;"	m	struct:mafFrames
isExonStart	hg/inc/mafFrames.h	/^    unsigned char isExonStart;	\/* does this start the CDS portion of an exon? *\/$/;"	m	struct:mafFrames
isFile	hg/inc/wiggle.h	/^    boolean isFile;		\/*	TRUE == it is a file, FALSE == DB *\/$/;"	m	struct:wiggleDataStream
isFrag	hg/inc/agp.h	/^    bool isFrag;$/;"	m	struct:agp
isFree	hg/lib/jksql.c	/^    boolean isFree;                \/* is this connection free for reuse; alway FALSE$/;"	m	struct:sqlConnection	file:
isFull	inc/spaceSaver.h	/^    boolean isFull;	      \/* Set to true if can't fit data into maxRows. *\/$/;"	m	struct:spaceSaver
isFuzzy	hg/inc/joiner.h	/^    boolean isFuzzy;		\/* True if no real primary key. *\/$/;"	m	struct:joinerSet
isGoodIntron	hg/lib/ggCluster.c	/^static boolean isGoodIntron(struct dnaSeq *targetSeq, $/;"	f	file:
isGtf	inc/gff.h	/^    bool isGtf;			\/* Is this a GTF file? *\/$/;"	m	struct:gffFile
isGtfFeature	hg/lib/genePred.c	/^static boolean isGtfFeature(char *feat)$/;"	f	file:
isGtfGroup	lib/gff.c	/^static boolean isGtfGroup(char *group)$/;"	f	file:
isHaploid	inc/vcf.h	/^    bool isHaploid;		\/\/ True if there is only one haplotype (e.g. chrY)$/;"	m	struct:vcfGenotype
isHermaphrodite	inc/wormdna.h	/^    boolean isHermaphrodite;    \/* True if hermaphrodites only. *\/$/;"	m	struct:wormCdnaInfo
isHubTrack	hg/lib/hubConnect.c	/^boolean isHubTrack(char *trackName)$/;"	f
isIntD	hg/lib/wigAsciiToBinary.c	/^static int isIntD(double x)$/;"	f	file:
isIntF	hg/lib/wigAsciiToBinary.c	/^static int isIntF(float x)$/;"	f	file:
isIsosciz	hg/lib/cutter.c	/^boolean isIsosciz(struct cutter *mainEnz, struct cutter *possibleScizEnz)$/;"	f
isIupac	lib/iupac.c	/^boolean isIupac(char c)$/;"	f
isIupacLower	lib/iupac.c	/^boolean isIupacLower(char c)$/;"	f
isKozak	lib/dnautil.c	/^boolean isKozak(char *dna, int dnaSize, int pos)$/;"	f
isList	inc/asParse.h	/^    bool isList;                   \/* TRUE if a list. *\/$/;"	m	struct:asColumn
isLumped	jkOwnLib/crudeali.c	/^    boolean isLumped;$/;"	m	struct:crudeExon	file:
isLumped	jkOwnLib/crudeali.c	/^    boolean isLumped;$/;"	m	struct:crudeHit	file:
isMale	inc/wormdna.h	/^    boolean isMale;             \/* True if males only. *\/$/;"	m	struct:wormCdnaInfo
isMapped	inc/itsa.h	/^    boolean isMapped;	\/* True if memory mapped. *\/$/;"	m	struct:itsa
isMapped	inc/splix.h	/^    boolean isMapped;	\/* True if memory mapped. *\/$/;"	m	struct:splix
isMapped	inc/sufa.h	/^    boolean isMapped;	\/* True if memory mapped. *\/$/;"	m	struct:sufa
isMapped	inc/sufx.h	/^    boolean isMapped;	\/* True if memory mapped. *\/$/;"	m	struct:sufx
isMetaChar	lib/gff3.c	/^static boolean isMetaChar(char c)$/;"	f	file:
isMetaUnique	inc/linefile.h	/^    bool isMetaUnique;          \/* if set, do not repeat comments in output *\/$/;"	m	struct:lineFile
isMimeEncoded	lib/htmlPage.c	/^static boolean isMimeEncoded(struct htmlForm *form)$/;"	f	file:
isMixableInputType	lib/htmlPage.c	/^static boolean isMixableInputType(char *type)$/;"	f	file:
isMixed	hg/inc/hapmapAllelesSummary.h	/^    char *isMixed;	\/* Are there different major alleles? *\/$/;"	m	struct:hapmapAllelesSummary
isMixed	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned char isMixed;	\/* 0 if all populations have the same major allele, 1 otherwise. *\/$/;"	m	struct:hapmapPhaseIIISummary
isMixed	hg/lib/hapmapSnpsCombined.c	/^boolean isMixed(struct hapmapSnpsCombined *thisItem)$/;"	f
isMonotonic	jkOwnLib/supStitch.c	/^static boolean isMonotonic(struct ffAli *left)$/;"	f	file:
isNameAtParentLevel	hg/lib/hui.c	/^boolean isNameAtParentLevel(struct trackDb *tdb,char *name)$/;"	f
isNotEmpty	inc/common.h	746;"	d
isOr	inc/dtdParse.h	/^   boolean isOr;                \/* Is this part of a ( n | m ) "or" list? *\/$/;"	m	struct:dtdElChild
isPalindrome	hg/lib/cutter.c	/^boolean isPalindrome(char *seq)$/;"	f
isPep	inc/genoFind.h	/^    bool isPep;			 	 \/* Is a peptide. *\/$/;"	m	struct:genoFind
isPhased	inc/vcf.h	/^    bool isPhased;		\/\/ True if haplotypes are phased$/;"	m	struct:vcfGenotype
isPipe	lib/osunix.c	/^boolean isPipe(int fd)$/;"	f
isPos	hg/inc/hdb.h	/^    boolean isPos;		\/* True if table is positional. *\/$/;"	m	struct:hTableInfo
isPrimary	hg/inc/joiner.h	/^    boolean isPrimary;		\/* True if is primary key. *\/$/;"	m	struct:joinerField
isProt	inc/supStitch.h	/^    boolean isProt;		\/* True if it's a protein based bundle. *\/$/;"	m	struct:ssBundle
isPseudo	hg/inc/switchDbTss.h	/^    unsigned char isPseudo;	\/* 0 if not a pseudogene TSS, 1 if it is *\/$/;"	m	struct:switchDbTss
isPslx	hg/lib/pslReader.c	/^    boolean isPslx;         \/* have qSequence, tSequence columns *\/$/;"	m	struct:pslReader	file:
isPsuedo	hg/inc/rnaGene.h	/^    unsigned char isPsuedo;	\/* TRUE(1) if psuedo, FALSE(0) otherwise *\/$/;"	m	struct:rnaGene
isQacFile	hg/lib/qaSeq.c	/^boolean isQacFile(char *fileName)$/;"	f
isRc	inc/trans3.h	/^     boolean isRc;			\/* Has been reverse complemented? *\/$/;"	m	struct:trans3
isRc	jkOwnLib/crudeali.c	/^    boolean isRc;$/;"	m	struct:crudeGene	file:
isReallyStopCodon	lib/dnautil.c	/^boolean isReallyStopCodon(char *dna, boolean selenocysteine)$/;"	f
isRefSeq	hg/inc/txInfo.h	/^    unsigned char isRefSeq;	\/* Is a refSeq *\/$/;"	m	struct:txInfo
isRefSeqAcc	hg/lib/hgFind.c	/^boolean isRefSeqAcc(char *acc)$/;"	f
isRoundLine	lib/blastParse.c	/^static boolean isRoundLine(char *line)$/;"	f	file:
isSameGeneGraph	hg/lib/geneGraph.c	/^boolean isSameGeneGraph(struct geneGraph *gg1, struct geneGraph *gg2)$/;"	f
isSearchTracksSupported	hg/lib/search.c	/^boolean isSearchTracksSupported(char *database, struct cart *cart)$/;"	f
isShow	hg/inc/trackDb.h	/^    boolean isShow;             \/* for supertracks tracks: true if this is a supertrack with pseudo-vis 'show' *\/$/;"	m	struct:trackDb
isShow	hg/lib/trackDbCustom.c	/^    boolean isShow;$/;"	m	struct:superTrackInfo	file:
isSimple	inc/asParse.h	/^    bool isSimple;	        \/* True if a simple object. *\/$/;"	m	struct:asObject
isSizeLink	inc/asParse.h	/^    bool isSizeLink;               \/* Flag to tell if have read link. *\/$/;"	m	struct:asColumn
isSnofSig	lib/snofsig.c	/^boolean isSnofSig(void *sig)$/;"	f
isSpeciesOn	hg/lib/hui.c	/^static boolean isSpeciesOn(struct cart *cart, struct trackDb *tdb, char *species, char *option, int optionSize, boolean defaultState)$/;"	f	file:
isSplit	hg/inc/hdb.h	/^    boolean isSplit;		\/* True if table is split. *\/$/;"	m	struct:hTableInfo
isSplit	hg/inc/trackTable.h	/^    unsigned char isSplit;	\/* 1 if table is split across chromosomes *\/$/;"	m	struct:trackTable
isStartStopCodon	hg/lib/genePred.c	/^static boolean isStartStopCodon(char *feat)$/;"	f	file:
isStopCodon	lib/dnautil.c	/^boolean isStopCodon(DNA *dna)$/;"	f
isSuper	hg/lib/trackDbCustom.c	/^    boolean isSuper;$/;"	m	struct:superTrackInfo	file:
isSwapped	hg/inc/chromGraph.h	/^    boolean isSwapped;	\/* Need to swap? *\/$/;"	m	struct:chromGraphBin
isSwapped	hg/inc/genomeRangeTreeFile.h	/^    boolean isSwapped;$/;"	m	struct:genomeRangeTreeFile
isSwapped	inc/bPlusTree.h	/^    boolean isSwapped;		\/* If TRUE need to byte swap everything. *\/$/;"	m	struct:bptFile
isSwapped	inc/bbiFile.h	/^    boolean isSwapped;		\/* If TRUE need to byte swap everything. *\/$/;"	m	struct:bbiFile
isSwapped	inc/cirTree.h	/^    boolean isSwapped;		\/* If TRUE need to byte swap everything. *\/$/;"	m	struct:cirTreeFile
isSwapped	inc/crTree.h	/^    boolean isSwapped;		\/* If TRUE need to byte swap everything. *\/$/;"	m	struct:crTreeFile
isSwapped	inc/twoBit.h	/^    boolean isSwapped;	\/* Is byte-swapping needed. *\/$/;"	m	struct:twoBitFile
isSwapped	lib/bbiRead.c	/^    boolean isSwapped;			\/* Need to byte-swap things? *\/$/;"	m	struct:chromNameCallbackContext	file:
isSwapped	lib/udc.c	/^    boolean isSwapped;		\/* If true need to swap all bytes on read. *\/$/;"	m	struct:udcBitmap	file:
isTabix	lib/annoStreamVcf.c	/^    boolean isTabix;			\/\/ True if we are accessing compressed VCF via tabix index$/;"	m	struct:annoStreamVcf	file:
isTable	inc/asParse.h	/^    bool isTable;	        \/* True if a table. *\/$/;"	m	struct:asObject
isTooCommon	hg/lib/hgFind.c	/^static boolean isTooCommon(char *table, char *key)$/;"	f	file:
isTrans	hg/inc/blatServers.h	/^    signed char isTrans;	\/* 0 for nucleotide\/1 for translated nucleotide *\/$/;"	m	struct:blatServers
isTrans	hg/inc/hdb.h	/^    boolean isTrans;	\/* Is tranlated to protein? *\/$/;"	m	struct:blatServerTable
isTrans	inc/seqOut.h	/^    bool isTrans;	 \/* True if haystack is translated. *\/$/;"	m	struct:baf
isTwoBit	inc/nibTwo.h	/^    boolean isTwoBit;		\/* True if this is a .2bit file. *\/$/;"	m	struct:nibTwoCache
isUnknownChrom	hg/lib/hdb.c	/^boolean isUnknownChrom(char *dataBase, char *chromName)$/;"	f
isUnsigned	inc/asParse.h	/^    bool isUnsigned;               \/* True if an unsigned int of some type. *\/$/;"	m	struct:asTypeInfo
isUnsignedInt	hg/lib/hgFind.c	/^static boolean isUnsignedInt(char *s)$/;"	f	file:
isVarEnd	hg/lib/hVarSubst.c	/^static boolean isVarEnd(boolean inBraces, char c)$/;"	f	file:
isWikiEditor	hg/lib/wikiTrack.c	/^boolean isWikiEditor(char *userName)$/;"	f
isinf	lib/pscmGfx.c	/^int isinf(double x) { return !finite(x) && x==x; }$/;"	f
isochores	hg/inc/isochores.h	/^struct isochores$/;"	s
isochoresCommaIn	hg/lib/isochores.c	/^struct isochores *isochoresCommaIn(char **pS, struct isochores *ret)$/;"	f
isochoresCommaOut	hg/inc/isochores.h	45;"	d
isochoresFree	hg/lib/isochores.c	/^void isochoresFree(struct isochores **pEl)$/;"	f
isochoresFreeList	hg/lib/isochores.c	/^void isochoresFreeList(struct isochores **pList)$/;"	f
isochoresLoad	hg/lib/isochores.c	/^struct isochores *isochoresLoad(char **row)$/;"	f
isochoresOutput	hg/lib/isochores.c	/^void isochoresOutput(struct isochores *el, FILE *f, char sep, char lastSep) $/;"	f
isochoresStaticLoad	hg/lib/isochores.c	/^void isochoresStaticLoad(char **row, struct isochores *ret)$/;"	f
isochoresTabOut	hg/inc/isochores.h	42;"	d
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:agi
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:cdna
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:chemo
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:fish
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:followUp
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:ihc
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:labTrack
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:mr
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:onStudy
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:patient
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:patientInfo
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:postSurgery
ispyId	hg/inc/ispyTables.h	/^    char *ispyId;	\/* I-SPY identifier uniquely corresponds 1 to 1 to the CALGB patient identifier *\/$/;"	m	struct:respEval
itList	lib/rbTree.c	/^struct slRef *itList;  \/* List of items that rbTreeItemsInRange returns. *\/$/;"	v	typeref:struct:slRef
italic	inc/seqOut.h	/^    bool italic;	\/* Italic? *\/$/;"	m	struct:cfm
item	inc/rbTree.h	/^    void *item;					\/* Item stored in tree *\/$/;"	m	struct:rbTreeNode
item	lib/crTree.c	/^     void *item;			\/* Underlying cr item. *\/$/;"	m	struct:ciItem	file:
itemAttr	hg/inc/itemAttr.h	/^struct itemAttr$/;"	s
itemAttrCommaIn	hg/lib/itemAttr.c	/^struct itemAttr *itemAttrCommaIn(char **pS, struct itemAttr *ret)$/;"	f
itemAttrCommaOut	hg/inc/itemAttr.h	61;"	d
itemAttrFree	hg/lib/itemAttr.c	/^void itemAttrFree(struct itemAttr **pEl)$/;"	f
itemAttrFreeList	hg/lib/itemAttr.c	/^void itemAttrFreeList(struct itemAttr **pList)$/;"	f
itemAttrLoad	hg/lib/itemAttr.c	/^struct itemAttr *itemAttrLoad(char **row)$/;"	f
itemAttrLoadAll	hg/lib/itemAttr.c	/^struct itemAttr *itemAttrLoadAll(char *fileName) $/;"	f
itemAttrLoadAllByChar	hg/lib/itemAttr.c	/^struct itemAttr *itemAttrLoadAllByChar(char *fileName, char chopper) $/;"	f
itemAttrLoadAllByTab	hg/inc/itemAttr.h	39;"	d
itemAttrOutput	hg/lib/itemAttr.c	/^void itemAttrOutput(struct itemAttr *el, FILE *f, char sep, char lastSep) $/;"	f
itemAttrStaticLoad	hg/lib/itemAttr.c	/^void itemAttrStaticLoad(char **row, struct itemAttr *ret)$/;"	f
itemAttrTabOut	hg/inc/itemAttr.h	58;"	d
itemAttrTbl	hg/lib/itemAttr.c	/^struct itemAttrTbl$/;"	s	file:
itemAttrTblFree	hg/lib/itemAttr.c	/^void itemAttrTblFree(struct itemAttrTbl **iatPtr)$/;"	f
itemAttrTblGet	hg/lib/itemAttr.c	/^struct itemAttr *itemAttrTblGet(struct itemAttrTbl *iat, char* name,$/;"	f
itemAttrTblLoad	hg/lib/itemAttr.c	/^void itemAttrTblLoad(struct itemAttrTbl *iat,$/;"	f
itemAttrTblNew	hg/lib/itemAttr.c	/^struct itemAttrTbl *itemAttrTblNew(char *table)$/;"	f
itemConf	hg/inc/itemConf.h	/^struct itemConf$/;"	s
itemConfCommaIn	hg/lib/itemConf.c	/^struct itemConf *itemConfCommaIn(char **pS, struct itemConf *ret)$/;"	f
itemConfCommaOut	hg/inc/itemConf.h	57;"	d
itemConfFree	hg/lib/itemConf.c	/^void itemConfFree(struct itemConf **pEl)$/;"	f
itemConfFreeList	hg/lib/itemConf.c	/^void itemConfFreeList(struct itemConf **pList)$/;"	f
itemConfLoad	hg/lib/itemConf.c	/^struct itemConf *itemConfLoad(char **row)$/;"	f
itemConfLoadAll	hg/lib/itemConf.c	/^struct itemConf *itemConfLoadAll(char *fileName) $/;"	f
itemConfLoadAllByChar	hg/lib/itemConf.c	/^struct itemConf *itemConfLoadAllByChar(char *fileName, char chopper) $/;"	f
itemConfLoadAllByTab	hg/inc/itemConf.h	35;"	d
itemConfOutput	hg/lib/itemConf.c	/^void itemConfOutput(struct itemConf *el, FILE *f, char sep, char lastSep) $/;"	f
itemConfStaticLoad	hg/lib/itemConf.c	/^void itemConfStaticLoad(char **row, struct itemConf *ret)$/;"	f
itemConfTabOut	hg/inc/itemConf.h	54;"	d
itemCount	inc/bPlusTree.h	/^    bits64 itemCount;		\/* Number of items indexed. *\/$/;"	m	struct:bptFile
itemCount	inc/bbiFile.h	/^    bits32 itemCount;	\/* Number of items for this chromosome. *\/$/;"	m	struct:bbiChromUsage
itemCount	inc/bwgInternal.h	/^    bits16 itemCount;			\/* Number of items in section. *\/$/;"	m	struct:bwgSection
itemCount	inc/bwgInternal.h	/^    bits16 itemCount;	\/* Number of items in block. *\/$/;"	m	struct:bwgSectionHead
itemCount	inc/cirTree.h	/^    bits64 itemCount;		\/* Number of items indexed. *\/$/;"	m	struct:cirTreeFile
itemDetailsHtml	hg/inc/itemDetailsHtml.h	/^struct itemDetailsHtml$/;"	s
itemDetailsHtmlCommaIn	hg/lib/itemDetailsHtml.c	/^struct itemDetailsHtml *itemDetailsHtmlCommaIn(char **pS, struct itemDetailsHtml *ret)$/;"	f
itemDetailsHtmlCommaOut	hg/inc/itemDetailsHtml.h	56;"	d
itemDetailsHtmlFree	hg/lib/itemDetailsHtml.c	/^void itemDetailsHtmlFree(struct itemDetailsHtml **pEl)$/;"	f
itemDetailsHtmlFreeList	hg/lib/itemDetailsHtml.c	/^void itemDetailsHtmlFreeList(struct itemDetailsHtml **pList)$/;"	f
itemDetailsHtmlLoad	hg/lib/itemDetailsHtml.c	/^struct itemDetailsHtml *itemDetailsHtmlLoad(char **row)$/;"	f
itemDetailsHtmlLoadAll	hg/lib/itemDetailsHtml.c	/^struct itemDetailsHtml *itemDetailsHtmlLoadAll(char *fileName) $/;"	f
itemDetailsHtmlLoadAllByChar	hg/lib/itemDetailsHtml.c	/^struct itemDetailsHtml *itemDetailsHtmlLoadAllByChar(char *fileName, char chopper) $/;"	f
itemDetailsHtmlLoadAllByTab	hg/inc/itemDetailsHtml.h	34;"	d
itemDetailsHtmlOutput	hg/lib/itemDetailsHtml.c	/^void itemDetailsHtmlOutput(struct itemDetailsHtml *el, FILE *f, char sep, char lastSep) $/;"	f
itemDetailsHtmlStaticLoad	hg/lib/itemDetailsHtml.c	/^void itemDetailsHtmlStaticLoad(char **row, struct itemDetailsHtml *ret)$/;"	f
itemDetailsHtmlTabOut	hg/inc/itemDetailsHtml.h	53;"	d
itemId	inc/trix.h	/^    char *itemId;               \/* ID of matching item *\/$/;"	m	struct:trixSearchResult
itemId	lib/trix.c	/^    char *itemId;		\/* Associated itemId *\/$/;"	m	struct:trixHitPos	file:
itemList	lib/bwgCreate.c	/^    struct bwgBedGraphItem *itemList;	\/* List of items. *\/$/;"	m	struct:bedGraphChrom	typeref:struct:bedGraphChrom::bwgBedGraphItem	file:
itemNumber	hg/inc/altGraphX.h	/^    int itemNumber;             \/* Number of altGraphX record derived from in list. *\/$/;"	m	struct:spliceEdge
itemOrCluster	inc/hacTree.h	/^    struct slList *itemOrCluster;  \/\/ If leaf node, one of the items passed in;$/;"	m	struct:hacTree	typeref:struct:hacTree::slList
itemRefList	inc/peakCluster.h	/^    struct slRef *itemRefList;	\/* List of references to component items. *\/$/;"	m	struct:peakCluster	typeref:struct:peakCluster::slRef
itemRgb	hg/inc/dgv.h	/^    unsigned itemRgb;	\/* Item R,G,B color. *\/$/;"	m	struct:dgv
itemRgb	hg/inc/makeItemsItem.h	/^    unsigned itemRgb;	\/* RGB 8 bits each as in bed *\/$/;"	m	struct:makeItemsItem
itemRgb	inc/basicBed.h	/^    unsigned itemRgb;    \/* RGB 8 bits each *\/$/;"	m	struct:bed
itemRgbColumn	lib/basicBed.c	/^static int itemRgbColumn(char *column9)$/;"	f	file:
itemSize	inc/snof.h	/^    int itemSize;$/;"	m	struct:snof
itemSize	lib/fof.c	/^    int itemSize;                \/* Size of index record. *\/$/;"	m	struct:fof	file:
itemSpan	inc/bwgInternal.h	/^    bits32 itemSpan;			\/* Item span if applicable. *\/$/;"	m	struct:bwgSection
itemSpan	inc/bwgInternal.h	/^    bits32 itemSpan;	\/* For some section types, the # of bases in each item. *\/$/;"	m	struct:bwgSectionHead
itemStep	inc/bwgInternal.h	/^    bits32 itemStep;			\/* Step within item if applicable. *\/$/;"	m	struct:bwgSection
itemStep	inc/bwgInternal.h	/^    bits32 itemStep;	\/* For some section types, the # of bases between items. *\/$/;"	m	struct:bwgSectionHead
items	inc/bwgInternal.h	/^    union bwgItem items;		\/* List\/array of items in this section. *\/$/;"	m	struct:bwgSection	typeref:union:bwgSection::bwgItem
itemsPerSlot	inc/cirTree.h	/^    bits32 itemsPerSlot;	\/* Max number of items to put in each index slot at lowest level. *\/$/;"	m	struct:cirTreeFile
itsa	inc/itsa.h	/^struct itsa $/;"	s
itsaBaseToVal	lib/itsa.c	/^int itsaBaseToVal[256];$/;"	v
itsaBaseToValInit	lib/itsa.c	/^void itsaBaseToValInit()$/;"	f
itsaDnaToBinary	lib/itsa.c	/^int itsaDnaToBinary(char *dna, int size)$/;"	f
itsaFileHeader	inc/itsa.h	/^struct itsaFileHeader$/;"	s
itsaFree	lib/itsa.c	/^void itsaFree(struct itsa **pItsa)$/;"	f
itsaOffsetToChromIx	lib/itsa.c	/^int itsaOffsetToChromIx(struct itsa *itsa, bits32 tOffset)$/;"	f
itsaRead	lib/itsa.c	/^struct itsa *itsaRead(char *fileName, boolean memoryMap)$/;"	f
itsaSlotCount	inc/itsa.h	73;"	d
iupacComplementBaseLower	lib/iupac.c	/^char iupacComplementBaseLower(char iupac)$/;"	f
iupacComplementLower	lib/iupac.c	/^void iupacComplementLower(char *iupac, int iuSize)$/;"	f
iupacFilter	lib/iupac.c	/^void iupacFilter(char *in, char *out)$/;"	f
iupacIn	lib/iupac.c	/^char *iupacIn(char *needle, char *haystack)$/;"	f
iupacMatch	lib/iupac.c	/^boolean iupacMatch(char iupac, char dna)$/;"	f
iupacMatchLower	lib/iupac.c	/^boolean iupacMatchLower(char iupac, char dna)$/;"	f
iupacMatchStart	lib/iupac.c	/^boolean iupacMatchStart(char *iupacPrefix, char *dnaString)$/;"	f
iupacReverseComplement	lib/iupac.c	/^void iupacReverseComplement(char *iu, int iuSize)$/;"	f
ix	hg/inc/agpFrag.h	/^    int ix;	\/* ix of this fragment (useless) *\/$/;"	m	struct:agpFrag
ix	hg/inc/agpGap.h	/^    int ix;	\/* ix of this fragment (useless) *\/$/;"	m	struct:agpGap
ix	hg/inc/trackVersion.h	/^    int ix;	\/* auto-increment ID *\/$/;"	m	struct:trackVersion
ix	inc/hgap.h	/^    int ix;                   \/* Contig index. *\/$/;"	m	struct:hgContig
ix	lib/colHash.h	/^    int ix;			\/* Color Index. *\/$/;"	m	struct:colHashEl
ix	lib/dnautil.c	/^    int ix;$/;"	m	struct:aminoAcidTable	file:
ixSig	lib/snofsig.c	/^static int ixSig[4] = {0x693F8ED1, 0x7EDA1C32, 0x4BA58983, 0x277CB89C,};$/;"	v	file:
ixx	inc/trix.h	/^    struct trixIxx *ixx;	\/* Second level index in memory. *\/$/;"	m	struct:trix	typeref:struct:trix::trixIxx
ixxAlloc	inc/trix.h	/^    int ixxAlloc;	        \/* Space allocated for index. *\/$/;"	m	struct:trix
ixxSize	inc/trix.h	/^    int ixxSize;		\/* Size of second level index. *\/$/;"	m	struct:trix
iy	lib/gifread.c	/^static WORD iy;$/;"	v	file:
javaScriptLiteralEncode	lib/cheapcgi.c	/^char *javaScriptLiteralEncode(char *inString)$/;"	f
jaxOrtholog	hg/inc/jaxOrtholog.h	/^struct jaxOrtholog$/;"	s
jaxOrthologCommaIn	hg/lib/jaxOrtholog.c	/^struct jaxOrtholog *jaxOrthologCommaIn(char **pS, struct jaxOrtholog *ret)$/;"	f
jaxOrthologCommaOut	hg/inc/jaxOrtholog.h	56;"	d
jaxOrthologFree	hg/lib/jaxOrtholog.c	/^void jaxOrthologFree(struct jaxOrtholog **pEl)$/;"	f
jaxOrthologFreeList	hg/lib/jaxOrtholog.c	/^void jaxOrthologFreeList(struct jaxOrtholog **pList)$/;"	f
jaxOrthologLoad	hg/lib/jaxOrtholog.c	/^struct jaxOrtholog *jaxOrthologLoad(char **row)$/;"	f
jaxOrthologLoadAll	hg/lib/jaxOrtholog.c	/^struct jaxOrtholog *jaxOrthologLoadAll(char *fileName) $/;"	f
jaxOrthologLoadWhere	hg/lib/jaxOrtholog.c	/^struct jaxOrtholog *jaxOrthologLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
jaxOrthologOutput	hg/lib/jaxOrtholog.c	/^void jaxOrthologOutput(struct jaxOrtholog *el, FILE *f, char sep, char lastSep) $/;"	f
jaxOrthologStaticLoad	hg/lib/jaxOrtholog.c	/^void jaxOrthologStaticLoad(char **row, struct jaxOrtholog *ret)$/;"	f
jaxOrthologTabOut	hg/inc/jaxOrtholog.h	53;"	d
jaxQTL	hg/inc/jaxQTL.h	/^struct jaxQTL$/;"	s
jaxQTL2	hg/inc/jaxQTL2.h	/^struct jaxQTL2$/;"	s
jaxQTL2CommaIn	hg/lib/jaxQTL2.c	/^struct jaxQTL2 *jaxQTL2CommaIn(char **pS, struct jaxQTL2 *ret)$/;"	f
jaxQTL2CommaOut	hg/inc/jaxQTL2.h	56;"	d
jaxQTL2Free	hg/lib/jaxQTL2.c	/^void jaxQTL2Free(struct jaxQTL2 **pEl)$/;"	f
jaxQTL2FreeList	hg/lib/jaxQTL2.c	/^void jaxQTL2FreeList(struct jaxQTL2 **pList)$/;"	f
jaxQTL2Load	hg/lib/jaxQTL2.c	/^struct jaxQTL2 *jaxQTL2Load(char **row)$/;"	f
jaxQTL2LoadAll	hg/lib/jaxQTL2.c	/^struct jaxQTL2 *jaxQTL2LoadAll(char *fileName) $/;"	f
jaxQTL2Output	hg/lib/jaxQTL2.c	/^void jaxQTL2Output(struct jaxQTL2 *el, FILE *f, char sep, char lastSep) $/;"	f
jaxQTL2StaticLoad	hg/lib/jaxQTL2.c	/^void jaxQTL2StaticLoad(char **row, struct jaxQTL2 *ret)$/;"	f
jaxQTL2TabOut	hg/inc/jaxQTL2.h	53;"	d
jaxQTL3	hg/inc/jaxQTL3.h	/^struct jaxQTL3$/;"	s
jaxQTL3CommaIn	hg/lib/jaxQTL3.c	/^struct jaxQTL3 *jaxQTL3CommaIn(char **pS, struct jaxQTL3 *ret)$/;"	f
jaxQTL3CommaOut	hg/inc/jaxQTL3.h	68;"	d
jaxQTL3Free	hg/lib/jaxQTL3.c	/^void jaxQTL3Free(struct jaxQTL3 **pEl)$/;"	f
jaxQTL3FreeList	hg/lib/jaxQTL3.c	/^void jaxQTL3FreeList(struct jaxQTL3 **pList)$/;"	f
jaxQTL3Load	hg/lib/jaxQTL3.c	/^struct jaxQTL3 *jaxQTL3Load(char **row)$/;"	f
jaxQTL3LoadAll	hg/lib/jaxQTL3.c	/^struct jaxQTL3 *jaxQTL3LoadAll(char *fileName) $/;"	f
jaxQTL3LoadAllByChar	hg/lib/jaxQTL3.c	/^struct jaxQTL3 *jaxQTL3LoadAllByChar(char *fileName, char chopper) $/;"	f
jaxQTL3LoadAllByTab	hg/inc/jaxQTL3.h	46;"	d
jaxQTL3Output	hg/lib/jaxQTL3.c	/^void jaxQTL3Output(struct jaxQTL3 *el, FILE *f, char sep, char lastSep) $/;"	f
jaxQTL3StaticLoad	hg/lib/jaxQTL3.c	/^void jaxQTL3StaticLoad(char **row, struct jaxQTL3 *ret)$/;"	f
jaxQTL3TabOut	hg/inc/jaxQTL3.h	65;"	d
jaxQTLCommaIn	hg/lib/jaxQTL.c	/^struct jaxQTL *jaxQTLCommaIn(char **pS, struct jaxQTL *ret)$/;"	f
jaxQTLCommaOut	hg/inc/jaxQTL.h	59;"	d
jaxQTLFree	hg/lib/jaxQTL.c	/^void jaxQTLFree(struct jaxQTL **pEl)$/;"	f
jaxQTLFreeList	hg/lib/jaxQTL.c	/^void jaxQTLFreeList(struct jaxQTL **pList)$/;"	f
jaxQTLLoad	hg/lib/jaxQTL.c	/^struct jaxQTL *jaxQTLLoad(char **row)$/;"	f
jaxQTLLoadAll	hg/lib/jaxQTL.c	/^struct jaxQTL *jaxQTLLoadAll(char *fileName) $/;"	f
jaxQTLLoadWhere	hg/lib/jaxQTL.c	/^struct jaxQTL *jaxQTLLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
jaxQTLOutput	hg/lib/jaxQTL.c	/^void jaxQTLOutput(struct jaxQTL *el, FILE *f, char sep, char lastSep) $/;"	f
jaxQTLStaticLoad	hg/lib/jaxQTL.c	/^void jaxQTLStaticLoad(char **row, struct jaxQTL *ret)$/;"	f
jaxQTLTabOut	hg/inc/jaxQTL.h	56;"	d
jcK	hg/inc/genomicDups.h	/^    float jcK;	\/* K-value calculated with Jukes-Cantor *\/$/;"	m	struct:genomicDups
jcK	hg/inc/genomicSuperDups.h	/^    float jcK;	\/* K-value calculated with Jukes-Cantor *\/$/;"	m	struct:genomicSuperDups
jeBoolean	hg/inc/jsHelper.h	/^    boolean jeBoolean;$/;"	m	union:jsonElementVal
jeDouble	hg/inc/jsHelper.h	/^    double jeDouble;$/;"	m	union:jsonElementVal
jeHash	hg/inc/jsHelper.h	/^    struct hash *jeHash;$/;"	m	union:jsonElementVal	typeref:struct:jsonElementVal::hash
jeList	hg/inc/jsHelper.h	/^    struct slRef *jeList;$/;"	m	union:jsonElementVal	typeref:struct:jsonElementVal::slRef
jeNumber	hg/inc/jsHelper.h	/^    long jeNumber;$/;"	m	union:jsonElementVal
jeString	hg/inc/jsHelper.h	/^    char *jeString;$/;"	m	union:jsonElementVal
jgiDescription	hg/inc/jgiGene.h	/^    char *jgiDescription;	\/* ORF annotation *\/$/;"	m	struct:jgiGene
jgiGc	hg/inc/jgiGene.h	/^    float jgiGc;	\/* GC content *\/$/;"	m	struct:jgiGene
jgiGene	hg/inc/jgiGene.h	/^struct jgiGene$/;"	s
jgiGeneCommaIn	hg/lib/jgiGene.c	/^struct jgiGene *jgiGeneCommaIn(char **pS, struct jgiGene *ret)$/;"	f
jgiGeneCommaOut	hg/inc/jgiGene.h	64;"	d
jgiGeneFree	hg/lib/jgiGene.c	/^void jgiGeneFree(struct jgiGene **pEl)$/;"	f
jgiGeneFreeList	hg/lib/jgiGene.c	/^void jgiGeneFreeList(struct jgiGene **pList)$/;"	f
jgiGeneId	hg/inc/jgiGene.h	/^    char *jgiGeneId;	\/* JGI gene ID *\/$/;"	m	struct:jgiGene
jgiGeneLoad	hg/lib/jgiGene.c	/^struct jgiGene *jgiGeneLoad(char **row)$/;"	f
jgiGeneLoadAll	hg/lib/jgiGene.c	/^struct jgiGene *jgiGeneLoadAll(char *fileName) $/;"	f
jgiGeneLoadAllByChar	hg/lib/jgiGene.c	/^struct jgiGene *jgiGeneLoadAllByChar(char *fileName, char chopper) $/;"	f
jgiGeneLoadAllByTab	hg/inc/jgiGene.h	42;"	d
jgiGeneOutput	hg/lib/jgiGene.c	/^void jgiGeneOutput(struct jgiGene *el, FILE *f, char sep, char lastSep) $/;"	f
jgiGeneStaticLoad	hg/lib/jgiGene.c	/^void jgiGeneStaticLoad(char **row, struct jgiGene *ret)$/;"	f
jgiGeneTabOut	hg/inc/jgiGene.h	61;"	d
jgiSymbol	hg/inc/jgiGene.h	/^    char *jgiSymbol;	\/* JGI gene symbol *\/$/;"	m	struct:jgiGene
jiggleSmallExons	jkOwnLib/gfBlatLib.c	/^static boolean jiggleSmallExons(struct ffAli *ali, struct dnaSeq *nSeq, struct dnaSeq *hSeq)$/;"	f	file:
jkwebDir	lib/wormdna.c	/^static char *jkwebDir = NULL;$/;"	v	file:
jmpBuf	inc/errCatch.h	/^    jmp_buf jmpBuf;		 \/* Where to jump back to for recovery. *\/$/;"	m	struct:errCatch
joinCmd	lib/pipeline.c	/^static char* joinCmd(char **cmd)$/;"	f	file:
joinCmds	lib/pipeline.c	/^static char* joinCmds(char ***cmds)$/;"	f	file:
joiner	hg/inc/joiner.h	/^struct joiner$/;"	s
joinerDependency	hg/inc/joiner.h	/^struct joinerDependency$/;"	s
joinerDependencyFree	hg/lib/joiner.c	/^static void joinerDependencyFree(struct joinerDependency **pDep)$/;"	f	file:
joinerDependencyFreeList	hg/lib/joiner.c	/^static void joinerDependencyFreeList(struct joinerDependency **pList)$/;"	f	file:
joinerDtf	hg/inc/joiner.h	/^struct joinerDtf$/;"	s
joinerDtfAllSameTable	hg/lib/joiner.c	/^boolean joinerDtfAllSameTable(struct joinerDtf *fieldList)$/;"	f
joinerDtfClone	hg/lib/joiner.c	/^struct joinerDtf *joinerDtfClone(struct joinerDtf *dtf)$/;"	f
joinerDtfFree	hg/lib/joiner.c	/^void joinerDtfFree(struct joinerDtf **pDtf)$/;"	f
joinerDtfFreeList	hg/lib/joiner.c	/^void joinerDtfFreeList(struct joinerDtf **pList)$/;"	f
joinerDtfFromDottedTriple	hg/lib/joiner.c	/^struct joinerDtf *joinerDtfFromDottedTriple(char *triple)$/;"	f
joinerDtfNew	hg/lib/joiner.c	/^struct joinerDtf *joinerDtfNew(char *database, char *table, char *field)$/;"	f
joinerDtfSameTable	hg/lib/joiner.c	/^boolean joinerDtfSameTable(struct joinerDtf *a, struct joinerDtf *b)$/;"	f
joinerExclusiveCheck	hg/lib/joiner.c	/^boolean joinerExclusiveCheck(struct joiner *joiner, char *aDatabase, $/;"	f
joinerExpand	hg/lib/joiner.c	/^static void joinerExpand(struct joiner *joiner)$/;"	f	file:
joinerField	hg/inc/joiner.h	/^struct joinerField$/;"	s
joinerFieldFree	hg/lib/joiner.c	/^static void joinerFieldFree(struct joinerField **pJf)$/;"	f	file:
joinerFieldFreeList	hg/lib/joiner.c	/^static void joinerFieldFreeList(struct joinerField **pList)$/;"	f	file:
joinerFindRoute	hg/lib/joiner.c	/^struct joinerPair *joinerFindRoute(struct joiner *joiner, $/;"	f
joinerFindRouteThroughAll	hg/lib/joiner.c	/^struct joinerPair *joinerFindRouteThroughAll(struct joiner *joiner, $/;"	f
joinerFree	hg/lib/joiner.c	/^void joinerFree(struct joiner **pJoiner)$/;"	f
joinerIgnore	hg/inc/joiner.h	/^struct joinerIgnore$/;"	s
joinerIgnoreFree	hg/lib/joiner.c	/^static void joinerIgnoreFree(struct joinerIgnore **pIg)$/;"	f	file:
joinerIgnoreFreeList	hg/lib/joiner.c	/^static void joinerIgnoreFreeList(struct joinerIgnore **pList)$/;"	f	file:
joinerLinkParents	hg/lib/joiner.c	/^static void joinerLinkParents(struct joiner *joiner)$/;"	f	file:
joinerPair	hg/inc/joiner.h	/^struct joinerPair$/;"	s
joinerPairClone	hg/lib/joiner.c	/^static struct joinerPair *joinerPairClone(struct joinerPair *jp)$/;"	f	file:
joinerPairDump	hg/lib/joiner.c	/^void joinerPairDump(struct joinerPair *jpList, FILE *out)$/;"	f
joinerPairFree	hg/lib/joiner.c	/^void joinerPairFree(struct joinerPair **pJp)$/;"	f
joinerPairFreeList	hg/lib/joiner.c	/^void joinerPairFreeList(struct joinerPair **pList)$/;"	f
joinerPairRemoveDupes	hg/lib/joiner.c	/^static void joinerPairRemoveDupes(struct joinerPair **pRouteList)$/;"	f	file:
joinerParsePassOne	hg/lib/joiner.c	/^static struct joiner *joinerParsePassOne(char *fileName)$/;"	f	file:
joinerRead	hg/lib/joiner.c	/^struct joiner *joinerRead(char *fileName)$/;"	f
joinerRelate	hg/lib/joiner.c	/^struct joinerPair *joinerRelate(struct joiner *joiner, char *database, $/;"	f
joinerSet	hg/inc/joiner.h	/^struct joinerSet$/;"	s
joinerSetFree	hg/lib/joiner.c	/^static void joinerSetFree(struct joinerSet **pJs)$/;"	f	file:
joinerSetFreeList	hg/lib/joiner.c	/^static void joinerSetFreeList(struct joinerSet **pList)$/;"	f	file:
joinerSetIncludesTable	hg/lib/joiner.c	/^static struct joinerField *joinerSetIncludesTable(struct joinerSet *js, $/;"	f	file:
joinerSetInheritanceChain	hg/lib/joiner.c	/^struct slRef *joinerSetInheritanceChain(struct joinerSet *js)$/;"	f
joinerTable	hg/inc/joiner.h	/^struct joinerTable$/;"	s
joinerTableFree	hg/lib/joiner.c	/^static void joinerTableFree(struct joinerTable **pTable)$/;"	f	file:
joinerTableFreeList	hg/lib/joiner.c	/^static void joinerTableFreeList(struct joinerTable **pList)$/;"	f	file:
joinerToField	hg/lib/joiner.c	/^static struct joinerPair *joinerToField($/;"	f	file:
joinerType	hg/inc/joiner.h	/^struct joinerType$/;"	s
journal	hg/inc/gwasCatalog.h	/^    char *journal;	\/* Journal of publication *\/$/;"	m	struct:gwasCatalog
jpegSize	lib/jpegSize.c	/^void jpegSize(char *fileName, int *width, int *height)$/;"	f
jsBeginCollapsibleSection	hg/lib/jsHelper.c	/^void jsBeginCollapsibleSection(struct cart *cart, char *track, char *section, char *sectionTitle,$/;"	f
jsCheckAllOnClickHandler	hg/lib/jsHelper.c	/^char *jsCheckAllOnClickHandler(char *idPrefix, boolean state)$/;"	f
jsCreateHiddenForm	hg/lib/jsHelper.c	/^void jsCreateHiddenForm(struct cart *cart, char *scriptName,$/;"	f
jsDropDownCarryOver	hg/lib/jsHelper.c	/^void jsDropDownCarryOver(struct dyString *dy, char *var)$/;"	f
jsEndCollapsibleSection	hg/lib/jsHelper.c	/^void jsEndCollapsibleSection()$/;"	f
jsIncludeFile	hg/lib/jsHelper.c	/^void jsIncludeFile(char *fileName, char *noScriptMsg)$/;"	f
jsInit	hg/lib/jsHelper.c	/^void jsInit()$/;"	f
jsInited	hg/lib/jsHelper.c	/^static boolean jsInited = FALSE;$/;"	v	file:
jsList	hg/inc/joiner.h	/^    struct joinerSet *jsList;	\/* List of identifiers. *\/$/;"	m	struct:joiner	typeref:struct:joiner::joinerSet
jsMakeCheckboxGroupSetClearButton	hg/lib/jsHelper.c	/^void jsMakeCheckboxGroupSetClearButton(char *buttonVar, boolean isSet)$/;"	f
jsMakeSetClearButton	hg/lib/jsHelper.c	/^void jsMakeSetClearButton(struct cart *cart,$/;"	f
jsMakeTrackingCheckBox	hg/lib/jsHelper.c	/^void jsMakeTrackingCheckBox(struct cart *cart,$/;"	f
jsMakeTrackingRadioButton	hg/lib/jsHelper.c	/^void jsMakeTrackingRadioButton(char *cgiVar, char *jsVar,$/;"	f
jsOnChangeEnd	hg/lib/jsHelper.c	/^char *jsOnChangeEnd(struct dyString **pDy)$/;"	f
jsOnChangeStart	hg/lib/jsHelper.c	/^struct dyString *jsOnChangeStart()$/;"	f
jsPressOnEnter	hg/lib/jsHelper.c	/^char *jsPressOnEnter(char *button)$/;"	f
jsRadioUpdate	hg/lib/jsHelper.c	/^char *jsRadioUpdate(char *cgiVar, char *jsVar, char *val)$/;"	f
jsSetVerticalPosition	hg/lib/jsHelper.c	/^char *jsSetVerticalPosition(char *form)$/;"	f
jsStripJavascript	hg/lib/jsHelper.c	/^char *jsStripJavascript(char *str)$/;"	f
jsTextCarryOver	hg/lib/jsHelper.c	/^void jsTextCarryOver(struct dyString *dy, char *var)$/;"	f
jsTrackedVarCarryOver	hg/lib/jsHelper.c	/^void jsTrackedVarCarryOver(struct dyString *dy, char *cgiVar, char *jsVar)$/;"	f
jsTrackingVar	hg/lib/jsHelper.c	/^void jsTrackingVar(char *jsVar, char *val)$/;"	f
jsWriteFunctions	hg/lib/jsHelper.c	/^void jsWriteFunctions()$/;"	f
jsonBoolean	hg/inc/jsHelper.h	/^    jsonBoolean  = 4,$/;"	e	enum:_jsonElementType
jsonDouble	hg/inc/jsHelper.h	/^    jsonDouble   = 3,$/;"	e	enum:_jsonElementType
jsonElement	hg/inc/jsHelper.h	/^struct jsonElement$/;"	s
jsonElementType	hg/inc/jsHelper.h	/^} jsonElementType;$/;"	t	typeref:enum:_jsonElementType
jsonElementVal	hg/inc/jsHelper.h	/^union jsonElementVal$/;"	u
jsonErrPrintf	hg/lib/jsHelper.c	/^void jsonErrPrintf(struct dyString *ds, char *format, ...)$/;"	f
jsonGlobalsHash	hg/lib/jsHelper.c	/^struct jsonElement *jsonGlobalsHash = NULL;$/;"	v	typeref:struct:jsonElement
jsonList	hg/inc/jsHelper.h	/^    jsonList     = 0,$/;"	e	enum:_jsonElementType
jsonListAdd	hg/lib/jsHelper.c	/^void jsonListAdd(struct jsonElement *list, struct jsonElement *ele)$/;"	f
jsonNumber	hg/inc/jsHelper.h	/^    jsonNumber   = 2,$/;"	e	enum:_jsonElementType
jsonObject	hg/inc/jsHelper.h	/^    jsonObject   = 1,$/;"	e	enum:_jsonElementType
jsonObjectAdd	hg/lib/jsHelper.c	/^void jsonObjectAdd(struct jsonElement *h, char *name, struct jsonElement *ele)$/;"	f
jsonParse	hg/lib/jsHelper.c	/^struct jsonElement *jsonParse(char *str)$/;"	f
jsonParseBoolean	hg/lib/jsHelper.c	/^static struct jsonElement *jsonParseBoolean(char *str, int *posPtr)$/;"	f	file:
jsonParseExpression	hg/lib/jsHelper.c	/^static struct jsonElement *jsonParseExpression(char *str, int *posPtr)$/;"	f	file:
jsonParseList	hg/lib/jsHelper.c	/^static struct jsonElement *jsonParseList(char *str, int *posPtr)$/;"	f	file:
jsonParseNumber	hg/lib/jsHelper.c	/^static struct jsonElement *jsonParseNumber(char *str, int *posPtr)$/;"	f	file:
jsonParseObject	hg/lib/jsHelper.c	/^static struct jsonElement *jsonParseObject(char *str, int *posPtr)$/;"	f	file:
jsonParseString	hg/lib/jsHelper.c	/^static struct jsonElement *jsonParseString(char *str, int *posPtr)$/;"	f	file:
jsonPrint	hg/lib/jsHelper.c	/^void jsonPrint(struct jsonElement *json, char *name, int indentLevel)$/;"	f
jsonPrintGlobals	hg/lib/jsHelper.c	/^void jsonPrintGlobals(boolean wrapWithScriptTags)$/;"	f
jsonPrintRecurse	hg/lib/jsHelper.c	/^static void jsonPrintRecurse(struct jsonElement *ele, int indentLevel)$/;"	f	file:
jsonString	hg/inc/jsHelper.h	/^    jsonString   = 5$/;"	e	enum:_jsonElementType
k2K	hg/inc/genomicSuperDups.h	/^    float k2K;	\/* Kimura K *\/$/;"	m	struct:genomicSuperDups
kEnd	hg/inc/pseudoGeneLink.h	/^    int kEnd;	\/* kg alignment end position *\/$/;"	m	struct:pseudoGeneLink
kEnd	hg/inc/retroMrnaInfo.h	/^    int kEnd;	\/* kg alignment end position col49 *\/$/;"	m	struct:retroMrnaInfo
kEnd	hg/inc/ucscRetroInfo.h	/^    int kEnd;	\/* kg alignment end position col47 *\/$/;"	m	struct:ucscRetroInfo
kForwardAffine	lib/axtAffine.c	/^void kForwardAffine($/;"	f
kStart	hg/inc/pseudoGeneLink.h	/^    int kStart;	\/* kg alignment start position *\/$/;"	m	struct:pseudoGeneLink
kStart	hg/inc/retroMrnaInfo.h	/^    int kStart;	\/* kg alignment start position col48 *\/$/;"	m	struct:retroMrnaInfo
kStart	hg/inc/ucscRetroInfo.h	/^    int kStart;	\/* kg alignment start position col46 *\/$/;"	m	struct:ucscRetroInfo
kaku	hg/inc/retroMrnaInfo.h	/^    float kaku;	\/* ratio of substitutions between coding and utr wrt parent gene *\/$/;"	m	struct:retroMrnaInfo
kdBranch	lib/chainBlock.c	/^struct kdBranch$/;"	s	file:
kdBuild	lib/chainBlock.c	/^static struct kdBranch *kdBuild(int nodeCount, struct dlList *lists[2], int dim,$/;"	f	file:
kdLeaf	lib/chainBlock.c	/^struct kdLeaf$/;"	s	file:
kdLeafCmpQ	lib/chainBlock.c	/^static int kdLeafCmpQ(const void *va, const void *vb)$/;"	f	file:
kdLeafCmpT	lib/chainBlock.c	/^static int kdLeafCmpT(const void *va, const void *vb)$/;"	f	file:
kdLeafCmpTotal	lib/chainBlock.c	/^static int kdLeafCmpTotal(const void *va, const void *vb)$/;"	f	file:
kdTree	lib/chainBlock.c	/^struct kdTree$/;"	s	file:
kdTreeMake	lib/chainBlock.c	/^static struct kdTree *kdTreeMake(struct kdLeaf *leafList, struct lm *lm)$/;"	f	file:
key	hg/inc/columnInfo.h	/^    char *key;	\/* Is this field indexed? If so how. *\/$/;"	m	struct:columnInfo
key	hg/inc/jksql.h	/^    char *key;            \/* key information *\/$/;"	m	struct:sqlFieldInfo
key	inc/fof.h	/^    char *key;              \/* Lookup key - filled in by client. Not allocate here. *\/$/;"	m	struct:fofBatch
key	inc/intValTree.h	/^    int key;$/;"	m	struct:intVal
key	inc/keys.h	/^    char *key;$/;"	m	struct:keyVal
key	inc/vcf.h	/^    char *key;			\/\/ A short identifier, e.g. MQ for mapping quality$/;"	m	struct:vcfInfoDef
key	inc/vcf.h	/^    char *key;			\/\/ An identifier described by a struct vcfInfoDef$/;"	m	struct:vcfInfoElement
key	lib/crTree.c	/^     struct crTreeRange key;		\/* The key for this item. *\/$/;"	m	struct:ciItem	typeref:struct:ciItem::crTreeRange	file:
keyExp	inc/keys.h	/^struct keyExp$/;"	s
keyExpEval	lib/keys.c	/^boolean keyExpEval(struct keyExp *keyExp, struct kvt *kvt)$/;"	f
keyExpParse	lib/keys.c	/^struct keyExp *keyExpParse(char *text)$/;"	f
keyExpType	lib/keys.c	/^enum keyExpType$/;"	g	file:
keyIsPrefix	hg/lib/hgFind.c	/^static boolean keyIsPrefix(char *key, char *text)$/;"	f	file:
keyIsPrefixIgnoreCase	hg/lib/hgFind.c	/^static boolean keyIsPrefixIgnoreCase(char *key, char *text)$/;"	f	file:
keySize	inc/bPlusTree.h	/^    bits32 keySize;		\/* Size of keys. *\/$/;"	m	struct:bptFile
keyTextScan	lib/keys.c	/^boolean keyTextScan(char *text, char *key, char *valBuf, int valBufSize)$/;"	f
keyVal	inc/keys.h	/^struct keyVal$/;"	s
kg1ToKg2	hg/inc/kg1ToKg2.h	/^struct kg1ToKg2$/;"	s
kg1ToKg2CommaIn	hg/lib/kg1ToKg2.c	/^struct kg1ToKg2 *kg1ToKg2CommaIn(char **pS, struct kg1ToKg2 *ret)$/;"	f
kg1ToKg2CommaOut	hg/inc/kg1ToKg2.h	61;"	d
kg1ToKg2Free	hg/lib/kg1ToKg2.c	/^void kg1ToKg2Free(struct kg1ToKg2 **pEl)$/;"	f
kg1ToKg2FreeList	hg/lib/kg1ToKg2.c	/^void kg1ToKg2FreeList(struct kg1ToKg2 **pList)$/;"	f
kg1ToKg2Load	hg/lib/kg1ToKg2.c	/^struct kg1ToKg2 *kg1ToKg2Load(char **row)$/;"	f
kg1ToKg2LoadAll	hg/lib/kg1ToKg2.c	/^struct kg1ToKg2 *kg1ToKg2LoadAll(char *fileName) $/;"	f
kg1ToKg2LoadAllByChar	hg/lib/kg1ToKg2.c	/^struct kg1ToKg2 *kg1ToKg2LoadAllByChar(char *fileName, char chopper) $/;"	f
kg1ToKg2LoadAllByTab	hg/inc/kg1ToKg2.h	39;"	d
kg1ToKg2Output	hg/lib/kg1ToKg2.c	/^void kg1ToKg2Output(struct kg1ToKg2 *el, FILE *f, char sep, char lastSep) $/;"	f
kg1ToKg2StaticLoad	hg/lib/kg1ToKg2.c	/^void kg1ToKg2StaticLoad(char **row, struct kg1ToKg2 *ret)$/;"	f
kg1ToKg2TabOut	hg/inc/kg1ToKg2.h	58;"	d
kgAlias	hg/inc/kgAlias.h	/^struct kgAlias$/;"	s
kgAliasCommaIn	hg/lib/kgAlias.c	/^struct kgAlias *kgAliasCommaIn(char **pS, struct kgAlias *ret)$/;"	f
kgAliasCommaOut	hg/inc/kgAlias.h	56;"	d
kgAliasFree	hg/lib/kgAlias.c	/^void kgAliasFree(struct kgAlias **pEl)$/;"	f
kgAliasFreeList	hg/lib/kgAlias.c	/^void kgAliasFreeList(struct kgAlias **pList)$/;"	f
kgAliasLoad	hg/lib/kgAlias.c	/^struct kgAlias *kgAliasLoad(char **row)$/;"	f
kgAliasLoadAll	hg/lib/kgAlias.c	/^struct kgAlias *kgAliasLoadAll(char *fileName) $/;"	f
kgAliasLoadAllByChar	hg/lib/kgAlias.c	/^struct kgAlias *kgAliasLoadAllByChar(char *fileName, char chopper) $/;"	f
kgAliasLoadAllByTab	hg/inc/kgAlias.h	34;"	d
kgAliasOutput	hg/lib/kgAlias.c	/^void kgAliasOutput(struct kgAlias *el, FILE *f, char sep, char lastSep) $/;"	f
kgAliasStaticLoad	hg/lib/kgAlias.c	/^void kgAliasStaticLoad(char **row, struct kgAlias *ret)$/;"	f
kgAliasTabOut	hg/inc/kgAlias.h	53;"	d
kgColor	hg/inc/kgColor.h	/^struct kgColor$/;"	s
kgColorCommaIn	hg/lib/kgColor.c	/^struct kgColor *kgColorCommaIn(char **pS, struct kgColor *ret)$/;"	f
kgColorCommaOut	hg/inc/kgColor.h	58;"	d
kgColorFree	hg/lib/kgColor.c	/^void kgColorFree(struct kgColor **pEl)$/;"	f
kgColorFreeList	hg/lib/kgColor.c	/^void kgColorFreeList(struct kgColor **pList)$/;"	f
kgColorLoad	hg/lib/kgColor.c	/^struct kgColor *kgColorLoad(char **row)$/;"	f
kgColorLoadAll	hg/lib/kgColor.c	/^struct kgColor *kgColorLoadAll(char *fileName) $/;"	f
kgColorLoadAllByChar	hg/lib/kgColor.c	/^struct kgColor *kgColorLoadAllByChar(char *fileName, char chopper) $/;"	f
kgColorLoadAllByTab	hg/inc/kgColor.h	36;"	d
kgColorOutput	hg/lib/kgColor.c	/^void kgColorOutput(struct kgColor *el, FILE *f, char sep, char lastSep) $/;"	f
kgColorStaticLoad	hg/lib/kgColor.c	/^void kgColorStaticLoad(char **row, struct kgColor *ret)$/;"	f
kgColorTabOut	hg/inc/kgColor.h	55;"	d
kgID	hg/inc/kgAlias.h	/^    char *kgID;	\/* Known Gene ID *\/$/;"	m	struct:kgAlias
kgID	hg/inc/kgColor.h	/^    char *kgID;	\/* Known gene ID *\/$/;"	m	struct:kgColor
kgID	hg/inc/kgProtAlias.h	/^    char *kgID;	\/* Known Gene ID *\/$/;"	m	struct:kgProtAlias
kgID	hg/inc/kgXref.h	/^    char *kgID;	\/* Known Gene ID *\/$/;"	m	struct:kgXref
kgMapName	hg/inc/kgMapName.h	/^struct kgMapName$/;"	s
kgMapNameCommaIn	hg/lib/kgMapName.c	/^struct kgMapName *kgMapNameCommaIn(char **pS, struct kgMapName *ret)$/;"	f
kgMapNameCommaOut	hg/inc/kgMapName.h	56;"	d
kgMapNameFree	hg/lib/kgMapName.c	/^void kgMapNameFree(struct kgMapName **pEl)$/;"	f
kgMapNameFreeList	hg/lib/kgMapName.c	/^void kgMapNameFreeList(struct kgMapName **pList)$/;"	f
kgMapNameLoad	hg/lib/kgMapName.c	/^struct kgMapName *kgMapNameLoad(char **row)$/;"	f
kgMapNameLoadAll	hg/lib/kgMapName.c	/^struct kgMapName *kgMapNameLoadAll(char *fileName) $/;"	f
kgMapNameLoadAllByChar	hg/lib/kgMapName.c	/^struct kgMapName *kgMapNameLoadAllByChar(char *fileName, char chopper) $/;"	f
kgMapNameLoadAllByTab	hg/inc/kgMapName.h	34;"	d
kgMapNameOutput	hg/lib/kgMapName.c	/^void kgMapNameOutput(struct kgMapName *el, FILE *f, char sep, char lastSep) $/;"	f
kgMapNameStaticLoad	hg/lib/kgMapName.c	/^void kgMapNameStaticLoad(char **row, struct kgMapName *ret)$/;"	f
kgMapNameTabOut	hg/inc/kgMapName.h	53;"	d
kgName	hg/inc/pseudoGeneLink.h	/^    char *kgName;	\/* Name of closest knownGene to gene *\/$/;"	m	struct:pseudoGeneLink
kgName	hg/inc/retroMrnaInfo.h	/^    char *kgName;	\/* Name of closest knownGene to gene col47 *\/$/;"	m	struct:retroMrnaInfo
kgName	hg/inc/ucscRetroInfo.h	/^    char *kgName;	\/* Name of closest knownGene to gene col45 *\/$/;"	m	struct:ucscRetroInfo
kgPepId	hg/inc/kgMapName.h	/^    char *kgPepId;	\/* pep ID *\/$/;"	m	struct:kgMapName
kgProtAlias	hg/inc/kgProtAlias.h	/^struct kgProtAlias$/;"	s
kgProtAliasCommaIn	hg/lib/kgProtAlias.c	/^struct kgProtAlias *kgProtAliasCommaIn(char **pS, struct kgProtAlias *ret)$/;"	f
kgProtAliasCommaOut	hg/inc/kgProtAlias.h	57;"	d
kgProtAliasFree	hg/lib/kgProtAlias.c	/^void kgProtAliasFree(struct kgProtAlias **pEl)$/;"	f
kgProtAliasFreeList	hg/lib/kgProtAlias.c	/^void kgProtAliasFreeList(struct kgProtAlias **pList)$/;"	f
kgProtAliasLoad	hg/lib/kgProtAlias.c	/^struct kgProtAlias *kgProtAliasLoad(char **row)$/;"	f
kgProtAliasLoadAll	hg/lib/kgProtAlias.c	/^struct kgProtAlias *kgProtAliasLoadAll(char *fileName) $/;"	f
kgProtAliasLoadAllByChar	hg/lib/kgProtAlias.c	/^struct kgProtAlias *kgProtAliasLoadAllByChar(char *fileName, char chopper) $/;"	f
kgProtAliasLoadAllByTab	hg/inc/kgProtAlias.h	35;"	d
kgProtAliasOutput	hg/lib/kgProtAlias.c	/^void kgProtAliasOutput(struct kgProtAlias *el, FILE *f, char sep, char lastSep) $/;"	f
kgProtAliasStaticLoad	hg/lib/kgProtAlias.c	/^void kgProtAliasStaticLoad(char **row, struct kgProtAlias *ret)$/;"	f
kgProtAliasTabOut	hg/inc/kgProtAlias.h	54;"	d
kgXref	hg/inc/kgXref.h	/^struct kgXref$/;"	s
kgXrefCommaIn	hg/lib/kgXref.c	/^struct kgXref *kgXrefCommaIn(char **pS, struct kgXref *ret)$/;"	f
kgXrefCommaOut	hg/inc/kgXref.h	64;"	d
kgXrefFree	hg/lib/kgXref.c	/^void kgXrefFree(struct kgXref **pEl)$/;"	f
kgXrefFreeList	hg/lib/kgXref.c	/^void kgXrefFreeList(struct kgXref **pList)$/;"	f
kgXrefLoad	hg/lib/kgXref.c	/^struct kgXref *kgXrefLoad(char **row)$/;"	f
kgXrefLoadAll	hg/lib/kgXref.c	/^struct kgXref *kgXrefLoadAll(char *fileName) $/;"	f
kgXrefLoadAllByChar	hg/lib/kgXref.c	/^struct kgXref *kgXrefLoadAllByChar(char *fileName, char chopper) $/;"	f
kgXrefLoadAllByTab	hg/inc/kgXref.h	42;"	d
kgXrefOutput	hg/lib/kgXref.c	/^void kgXrefOutput(struct kgXref *el, FILE *f, char sep, char lastSep) $/;"	f
kgXrefStaticLoad	hg/lib/kgXref.c	/^void kgXrefStaticLoad(char **row, struct kgXref *ret)$/;"	f
kgXrefTabOut	hg/inc/kgXref.h	61;"	d
knetFile_s	lib/knetUdc.c	/^struct knetFile_s {$/;"	s	file:
knetUdcInstall	lib/knetUdc.c	/^void knetUdcInstall()$/;"	f
knowEnd	inc/wormdna.h	/^    boolean knowStart, knowEnd; \/* Start known?  End known? *\/$/;"	m	struct:wormCdnaInfo
knowStart	inc/wormdna.h	/^    boolean knowStart, knowEnd; \/* Start known?  End known? *\/$/;"	m	struct:wormCdnaInfo
knownCanonicalCommaIn	hg/lib/knownCanonical.c	/^struct knownCanonical *knownCanonicalCommaIn(char **pS, struct knownCanonical *ret)$/;"	f
knownCanonicalFree	hg/lib/knownCanonical.c	/^void knownCanonicalFree(struct knownCanonical **pEl)$/;"	f
knownCanonicalFreeList	hg/lib/knownCanonical.c	/^void knownCanonicalFreeList(struct knownCanonical **pList)$/;"	f
knownCanonicalLoad	hg/lib/knownCanonical.c	/^struct knownCanonical *knownCanonicalLoad(char **row)$/;"	f
knownCanonicalLoadAll	hg/lib/knownCanonical.c	/^struct knownCanonical *knownCanonicalLoadAll(char *fileName) $/;"	f
knownCanonicalLoadAllByChar	hg/lib/knownCanonical.c	/^struct knownCanonical *knownCanonicalLoadAllByChar(char *fileName, char chopper) $/;"	f
knownCanonicalOutput	hg/lib/knownCanonical.c	/^void knownCanonicalOutput(struct knownCanonical *el, FILE *f, char sep, char lastSep) $/;"	f
knownCanonicalStaticLoad	hg/lib/knownCanonical.c	/^void knownCanonicalStaticLoad(char **row, struct knownCanonical *ret)$/;"	f
knownInfo	hg/inc/knownInfo.h	/^struct knownInfo$/;"	s
knownInfoCommaIn	hg/lib/knownInfo.c	/^struct knownInfo *knownInfoCommaIn(char **pS, struct knownInfo *ret)$/;"	f
knownInfoCommaOut	hg/inc/knownInfo.h	48;"	d
knownInfoFree	hg/lib/knownInfo.c	/^void knownInfoFree(struct knownInfo **pEl)$/;"	f
knownInfoFreeList	hg/lib/knownInfo.c	/^void knownInfoFreeList(struct knownInfo **pList)$/;"	f
knownInfoLoad	hg/lib/knownInfo.c	/^struct knownInfo *knownInfoLoad(char **row)$/;"	f
knownInfoOutput	hg/lib/knownInfo.c	/^void knownInfoOutput(struct knownInfo *el, FILE *f, char sep, char lastSep) $/;"	f
knownInfoStaticLoad	hg/lib/knownInfo.c	/^void knownInfoStaticLoad(char **row, struct knownInfo *ret)$/;"	f
knownInfoTabOut	hg/inc/knownInfo.h	45;"	d
knownMore	hg/inc/knownMore.h	/^struct knownMore$/;"	s
knownMoreCommaIn	hg/lib/knownMore.c	/^struct knownMore *knownMoreCommaIn(char **pS, struct knownMore *ret)$/;"	f
knownMoreCommaOut	hg/inc/knownMore.h	60;"	d
knownMoreFree	hg/lib/knownMore.c	/^void knownMoreFree(struct knownMore **pEl)$/;"	f
knownMoreFreeList	hg/lib/knownMore.c	/^void knownMoreFreeList(struct knownMore **pList)$/;"	f
knownMoreLoad	hg/lib/knownMore.c	/^struct knownMore *knownMoreLoad(char **row)$/;"	f
knownMoreOutput	hg/lib/knownMore.c	/^void knownMoreOutput(struct knownMore *el, FILE *f, char sep, char lastSep) $/;"	f
knownMoreStaticLoad	hg/lib/knownMore.c	/^void knownMoreStaticLoad(char **row, struct knownMore *ret)$/;"	f
knownMoreTabOut	hg/inc/knownMore.h	57;"	d
knownToSuper	hg/inc/knownToSuper.h	/^struct knownToSuper$/;"	s
knownToSuperCommaIn	hg/lib/knownToSuper.c	/^struct knownToSuper *knownToSuperCommaIn(char **pS, struct knownToSuper *ret)$/;"	f
knownToSuperCommaOut	hg/inc/knownToSuper.h	59;"	d
knownToSuperFree	hg/lib/knownToSuper.c	/^void knownToSuperFree(struct knownToSuper **pEl)$/;"	f
knownToSuperFreeList	hg/lib/knownToSuper.c	/^void knownToSuperFreeList(struct knownToSuper **pList)$/;"	f
knownToSuperLoad	hg/lib/knownToSuper.c	/^struct knownToSuper *knownToSuperLoad(char **row)$/;"	f
knownToSuperLoadAll	hg/lib/knownToSuper.c	/^struct knownToSuper *knownToSuperLoadAll(char *fileName) $/;"	f
knownToSuperLoadAllByChar	hg/lib/knownToSuper.c	/^struct knownToSuper *knownToSuperLoadAllByChar(char *fileName, char chopper) $/;"	f
knownToSuperLoadAllByTab	hg/inc/knownToSuper.h	37;"	d
knownToSuperOutput	hg/lib/knownToSuper.c	/^void knownToSuperOutput(struct knownToSuper *el, FILE *f, char sep, char lastSep) $/;"	f
knownToSuperStaticLoad	hg/lib/knownToSuper.c	/^void knownToSuperStaticLoad(char **row, struct knownToSuper *ret)$/;"	f
knownToSuperTabOut	hg/inc/knownToSuper.h	56;"	d
kuClose	lib/knetUdc.c	/^static int kuClose(knetFile *fp)$/;"	f	file:
kuDopen	lib/knetUdc.c	/^static knetFile *kuDopen(int fd, const char *mode)$/;"	f	file:
kuOpen	lib/knetUdc.c	/^static knetFile *kuOpen(const char *filename, const char *mode)$/;"	f	file:
kuRead	lib/knetUdc.c	/^static off_t kuRead(knetFile *fp, void *buf, off_t len)$/;"	f	file:
kuSeek	lib/knetUdc.c	/^static off_t kuSeek(knetFile *fp, int64_t off, int whence)$/;"	f	file:
kuTell	lib/knetUdc.c	/^static off_t kuTell(knetFile *fp)$/;"	f	file:
kvt	lib/keys.c	/^struct kvt$/;"	s	file:
kvtAdd	lib/keys.c	/^struct keyVal *kvtAdd(struct kvt *kvt, char *key, char *val)$/;"	f
kvtClear	lib/keys.c	/^void kvtClear(struct kvt *kvt)$/;"	f
kvtGet	lib/keys.c	/^struct keyVal* kvtGet(struct kvt *kvt, char *key)$/;"	f
kvtLookup	lib/keys.c	/^char *kvtLookup(struct kvt *kvt, char *key)$/;"	f
kvtParseAdd	lib/keys.c	/^void kvtParseAdd(struct kvt *kvt, char *text)$/;"	f
kvtWriteAll	lib/keys.c	/^void kvtWriteAll(struct kvt *kvt, FILE *f, struct slName *hideList)$/;"	f
kxAnd	lib/keys.c	/^    kxAnd,$/;"	e	enum:keyExpType	file:
kxGE	lib/keys.c	/^    kxGE,      \/* Greater Than or Equal *\/$/;"	e	enum:keyExpType	file:
kxGT	lib/keys.c	/^    kxGT,      \/* Greater Than *\/$/;"	e	enum:keyExpType	file:
kxLE	lib/keys.c	/^    kxLE,      \/* Less Than or Equal *\/$/;"	e	enum:keyExpType	file:
kxLT	lib/keys.c	/^    kxLT,      \/* Less Than *\/$/;"	e	enum:keyExpType	file:
kxMatch	lib/keys.c	/^    kxMatch,$/;"	e	enum:keyExpType	file:
kxNot	lib/keys.c	/^    kxNot,$/;"	e	enum:keyExpType	file:
kxOr	lib/keys.c	/^    kxOr,$/;"	e	enum:keyExpType	file:
kxTok	inc/kxTok.h	/^struct kxTok$/;"	s
kxTokIncludeQuotes	lib/kxTok.c	/^void kxTokIncludeQuotes(boolean val)$/;"	f
kxTokNew	lib/kxTok.c	/^static struct kxTok *kxTokNew(enum kxTokType type, char *string, int stringSize,$/;"	f	file:
kxTokType	inc/kxTok.h	/^enum kxTokType$/;"	g
kxTokenize	lib/kxTok.c	/^struct kxTok *kxTokenize(char *text, boolean wildAst)$/;"	f
kxTokenizeFancy	lib/kxTok.c	/^struct kxTok *kxTokenizeFancy(char *text, boolean wildAst,$/;"	f
kxWildMatch	lib/keys.c	/^    kxWildMatch,$/;"	e	enum:keyExpType	file:
kxXor	lib/keys.c	/^    kxXor,$/;"	e	enum:keyExpType	file:
kxtAdd	inc/kxTok.h	/^    kxtAdd,$/;"	e	enum:kxTokType
kxtAnd	inc/kxTok.h	/^    kxtAnd,$/;"	e	enum:kxTokType
kxtCloseParen	inc/kxTok.h	/^    kxtCloseParen,$/;"	e	enum:kxTokType
kxtDiv	inc/kxTok.h	/^    kxtDiv,$/;"	e	enum:kxTokType
kxtDot	inc/kxTok.h	/^    kxtDot,$/;"	e	enum:kxTokType
kxtEnd	inc/kxTok.h	/^    kxtEnd,$/;"	e	enum:kxTokType
kxtEquals	inc/kxTok.h	/^    kxtEquals,$/;"	e	enum:kxTokType
kxtGE	inc/kxTok.h	/^    kxtGE,      \/* Greater Than or Equal *\/$/;"	e	enum:kxTokType
kxtGT	inc/kxTok.h	/^    kxtGT,      \/* Greater Than *\/$/;"	e	enum:kxTokType
kxtLE	inc/kxTok.h	/^    kxtLE,      \/* Less Than or Equal *\/$/;"	e	enum:kxTokType
kxtLT	inc/kxTok.h	/^    kxtLT,      \/* Less Than *\/$/;"	e	enum:kxTokType
kxtMod	inc/kxTok.h	/^    kxtMod,$/;"	e	enum:kxTokType
kxtMul	inc/kxTok.h	/^    kxtMul,$/;"	e	enum:kxTokType
kxtNot	inc/kxTok.h	/^    kxtNot,$/;"	e	enum:kxTokType
kxtOpenParen	inc/kxTok.h	/^    kxtOpenParen,$/;"	e	enum:kxTokType
kxtOr	inc/kxTok.h	/^    kxtOr,$/;"	e	enum:kxTokType
kxtPunct	inc/kxTok.h	/^    kxtPunct,$/;"	e	enum:kxTokType
kxtString	inc/kxTok.h	/^    kxtString,$/;"	e	enum:kxTokType
kxtSub	inc/kxTok.h	/^    kxtSub,$/;"	e	enum:kxTokType
kxtWildString	inc/kxTok.h	/^    kxtWildString,$/;"	e	enum:kxTokType
kxtXor	inc/kxTok.h	/^    kxtXor,$/;"	e	enum:kxTokType
l	inc/memgfx.h	/^    unsigned short s, l;$/;"	m	struct:hslColor
lab	hg/inc/stsMap.h	/^    char *lab;	\/* Laboratory that placed the FISH clone *\/$/;"	m	struct:stsMap
labTrack	hg/inc/ispyTables.h	/^struct labTrack$/;"	s
labTrackCommaIn	hg/lib/ispyTables.c	/^struct labTrack *labTrackCommaIn(char **pS, struct labTrack *ret)$/;"	f
labTrackCommaOut	hg/inc/ispyTables.h	1079;"	d
labTrackFree	hg/lib/ispyTables.c	/^void labTrackFree(struct labTrack **pEl)$/;"	f
labTrackFreeList	hg/lib/ispyTables.c	/^void labTrackFreeList(struct labTrack **pList)$/;"	f
labTrackLoadAll	hg/lib/ispyTables.c	/^struct labTrack *labTrackLoadAll(char *fileName) $/;"	f
labTrackLoadAllByChar	hg/lib/ispyTables.c	/^struct labTrack *labTrackLoadAllByChar(char *fileName, char chopper) $/;"	f
labTrackLoadAllByTab	hg/inc/ispyTables.h	1032;"	d
labTrackLoadByQuery	hg/lib/ispyTables.c	/^struct labTrack *labTrackLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
labTrackLoadWithNull	hg/lib/ispyTables.c	/^struct labTrack *labTrackLoadWithNull(char **row)$/;"	f
labTrackOutput	hg/lib/ispyTables.c	/^void labTrackOutput(struct labTrack *el, FILE *f, char sep, char lastSep) $/;"	f
labTrackSaveToDb	hg/lib/ispyTables.c	/^void labTrackSaveToDb(struct sqlConnection *conn, struct labTrack *el, char *tableName, int updateSize)$/;"	f
labTrackSaveToDbEscaped	hg/lib/ispyTables.c	/^void labTrackSaveToDbEscaped(struct sqlConnection *conn, struct labTrack *el, char *tableName, int updateSize)$/;"	f
labTrackStaticLoadWithNull	hg/lib/ispyTables.c	/^void labTrackStaticLoadWithNull(char **row, struct labTrack *ret)$/;"	f
labTrackTabOut	hg/inc/ispyTables.h	1076;"	d
label	hg/inc/grp.h	/^    char *label;	\/* Label to display to user *\/$/;"	m	struct:grp
label	hg/inc/gv.h	/^    char *label;	\/* short official name for this mutation *\/$/;"	m	struct:gvPos
label	hg/inc/hui.h	/^    char *label;                \/\/ Label (which could include HTML)$/;"	m	struct:extraField
label	hg/inc/hui.h	/^   char *label;	  \/* Filter label. *\/$/;"	m	struct:mrnaFilter
label	hg/inc/hui.h	/^   char *label; \/* Label (not allocated here) *\/$/;"	m	struct:trackNameAndLabel
label	hg/inc/protVar.h	/^    char *label;	\/* short official name for this mutation *\/$/;"	m	struct:protVarPos
label	hg/inc/pseudoGeneLink.h	/^    int label;	\/* 1=pseudogene,-1 not pseudogene -2 expressed retroGene *\/$/;"	m	struct:pseudoGeneLink
label	hg/inc/retroMrnaInfo.h	/^    int label;	\/* 1=pseudogene,-1 not pseudogene -2 expressed retroGene col34 *\/$/;"	m	struct:retroMrnaInfo
label	hg/inc/ucscRetroInfo.h	/^    int label;	\/* 1=pseudogene,-1 not pseudogene -2 expressed retroGene col32 *\/$/;"	m	struct:ucscRetroInfo
label	hg/lib/chromGraphFactory.c	/^    char *label;	\/* Label *\/$/;"	m	struct:labeledFile	file:
label	inc/annoFilter.h	/^    char *label;		\/\/ Option label for UI (if NULL, see column->comment)$/;"	m	struct:annoFilter
label	inc/peakCluster.h	/^    char *label;	\/* Label *\/$/;"	m	struct:peakDim
labelRoot	hg/lib/hui.c	/^static char *labelRoot(char *label, char** suffix)$/;"	f	file:
labelWithVocabLink	hg/lib/fileUi.c	/^static char *labelWithVocabLink(char *var,char *title,struct slPair *valsAndLabels,boolean tagsNotVals)$/;"	f	file:
labelWithVocabLinkForMultiples	hg/lib/hui.c	/^static char *labelWithVocabLinkForMultiples(char *db,struct trackDb *parentTdb, members_t* members)$/;"	f	file:
labeledFile	hg/lib/chromGraphFactory.c	/^struct labeledFile$/;"	s	file:
labeledFileNew	hg/lib/chromGraphFactory.c	/^struct labeledFile *labeledFileNew(char *fileName, char *label)$/;"	f
labels	inc/peakCluster.h	/^    char **labels;		\/* Label for each dimension *\/$/;"	m	struct:peakSource
labs	hg/inc/fishClones.h	/^    char **labs;	\/* Lab where clone FISH'd *\/$/;"	m	struct:fishClones
landmark	hg/inc/dgv.h	/^    char *landmark;	\/* Genomic marker near the variation locus *\/$/;"	m	struct:dgv
landmark	hg/inc/landmark.h	/^struct landmark$/;"	s
landmarkAttr	hg/inc/landmark.h	/^struct landmarkAttr$/;"	s
landmarkAttrCommaIn	hg/lib/landmark.c	/^struct landmarkAttr *landmarkAttrCommaIn(char **pS, struct landmarkAttr *ret)$/;"	f
landmarkAttrCommaOut	hg/inc/landmark.h	168;"	d
landmarkAttrFree	hg/lib/landmark.c	/^void landmarkAttrFree(struct landmarkAttr **pEl)$/;"	f
landmarkAttrFreeList	hg/lib/landmark.c	/^void landmarkAttrFreeList(struct landmarkAttr **pList)$/;"	f
landmarkAttrLink	hg/inc/landmark.h	/^struct landmarkAttrLink$/;"	s
landmarkAttrLinkCommaIn	hg/lib/landmark.c	/^struct landmarkAttrLink *landmarkAttrLinkCommaIn(char **pS, struct landmarkAttrLink *ret)$/;"	f
landmarkAttrLinkCommaOut	hg/inc/landmark.h	246;"	d
landmarkAttrLinkFree	hg/lib/landmark.c	/^void landmarkAttrLinkFree(struct landmarkAttrLink **pEl)$/;"	f
landmarkAttrLinkFreeList	hg/lib/landmark.c	/^void landmarkAttrLinkFreeList(struct landmarkAttrLink **pList)$/;"	f
landmarkAttrLinkLoad	hg/lib/landmark.c	/^struct landmarkAttrLink *landmarkAttrLinkLoad(char **row)$/;"	f
landmarkAttrLinkLoadAll	hg/lib/landmark.c	/^struct landmarkAttrLink *landmarkAttrLinkLoadAll(char *fileName) $/;"	f
landmarkAttrLinkLoadAllByChar	hg/lib/landmark.c	/^struct landmarkAttrLink *landmarkAttrLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
landmarkAttrLinkLoadAllByTab	hg/inc/landmark.h	199;"	d
landmarkAttrLinkLoadByQuery	hg/lib/landmark.c	/^struct landmarkAttrLink *landmarkAttrLinkLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
landmarkAttrLinkOutput	hg/lib/landmark.c	/^void landmarkAttrLinkOutput(struct landmarkAttrLink *el, FILE *f, char sep, char lastSep) $/;"	f
landmarkAttrLinkSaveToDb	hg/lib/landmark.c	/^void landmarkAttrLinkSaveToDb(struct sqlConnection *conn, struct landmarkAttrLink *el, char *tableName, int updateSize)$/;"	f
landmarkAttrLinkSaveToDbEscaped	hg/lib/landmark.c	/^void landmarkAttrLinkSaveToDbEscaped(struct sqlConnection *conn, struct landmarkAttrLink *el, char *tableName, int updateSize)$/;"	f
landmarkAttrLinkStaticLoad	hg/lib/landmark.c	/^void landmarkAttrLinkStaticLoad(char **row, struct landmarkAttrLink *ret)$/;"	f
landmarkAttrLinkTabOut	hg/inc/landmark.h	243;"	d
landmarkAttrLoad	hg/lib/landmark.c	/^struct landmarkAttr *landmarkAttrLoad(char **row)$/;"	f
landmarkAttrLoadAll	hg/lib/landmark.c	/^struct landmarkAttr *landmarkAttrLoadAll(char *fileName) $/;"	f
landmarkAttrLoadAllByChar	hg/lib/landmark.c	/^struct landmarkAttr *landmarkAttrLoadAllByChar(char *fileName, char chopper) $/;"	f
landmarkAttrLoadAllByTab	hg/inc/landmark.h	121;"	d
landmarkAttrLoadByQuery	hg/lib/landmark.c	/^struct landmarkAttr *landmarkAttrLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
landmarkAttrOutput	hg/lib/landmark.c	/^void landmarkAttrOutput(struct landmarkAttr *el, FILE *f, char sep, char lastSep) $/;"	f
landmarkAttrSaveToDb	hg/lib/landmark.c	/^void landmarkAttrSaveToDb(struct sqlConnection *conn, struct landmarkAttr *el, char *tableName, int updateSize)$/;"	f
landmarkAttrSaveToDbEscaped	hg/lib/landmark.c	/^void landmarkAttrSaveToDbEscaped(struct sqlConnection *conn, struct landmarkAttr *el, char *tableName, int updateSize)$/;"	f
landmarkAttrSize	hg/lib/landmarkUi.c	/^int landmarkAttrSize = ArraySize(landmarkAttributes);$/;"	v
landmarkAttrStaticLoad	hg/lib/landmark.c	/^void landmarkAttrStaticLoad(char **row, struct landmarkAttr *ret)$/;"	f
landmarkAttrTabOut	hg/inc/landmark.h	165;"	d
landmarkAttributes	hg/lib/landmarkUi.c	/^char *landmarkAttributes[] = {$/;"	v
landmarkCommaIn	hg/lib/landmark.c	/^struct landmark *landmarkCommaIn(char **pS, struct landmark *ret)$/;"	f
landmarkCommaOut	hg/inc/landmark.h	90;"	d
landmarkFree	hg/lib/landmark.c	/^void landmarkFree(struct landmark **pEl)$/;"	f
landmarkFreeList	hg/lib/landmark.c	/^void landmarkFreeList(struct landmark **pList)$/;"	f
landmarkId	hg/inc/landmark.h	/^    unsigned landmarkId;	\/* key into the landmark table *\/$/;"	m	struct:landmarkAttr
landmarkId	hg/inc/landmark.h	/^    unsigned landmarkId;	\/* unique ID to identify this landmark *\/$/;"	m	struct:landmark
landmarkLoad	hg/lib/landmark.c	/^struct landmark *landmarkLoad(char **row)$/;"	f
landmarkLoadAll	hg/lib/landmark.c	/^struct landmark *landmarkLoadAll(char *fileName) $/;"	f
landmarkLoadAllByChar	hg/lib/landmark.c	/^struct landmark *landmarkLoadAllByChar(char *fileName, char chopper) $/;"	f
landmarkLoadAllByTab	hg/inc/landmark.h	43;"	d
landmarkLoadByQuery	hg/lib/landmark.c	/^struct landmark *landmarkLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
landmarkOutput	hg/lib/landmark.c	/^void landmarkOutput(struct landmark *el, FILE *f, char sep, char lastSep) $/;"	f
landmarkSaveToDb	hg/lib/landmark.c	/^void landmarkSaveToDb(struct sqlConnection *conn, struct landmark *el, char *tableName, int updateSize)$/;"	f
landmarkSaveToDbEscaped	hg/lib/landmark.c	/^void landmarkSaveToDbEscaped(struct sqlConnection *conn, struct landmark *el, char *tableName, int updateSize)$/;"	f
landmarkStaticLoad	hg/lib/landmark.c	/^void landmarkStaticLoad(char **row, struct landmark *ret)$/;"	f
landmarkTabOut	hg/inc/landmark.h	87;"	d
landmarkType	hg/inc/landmark.h	/^    char *landmarkType;	\/* type of landmark: HSS, promoter, .. *\/$/;"	m	struct:landmark
landmarkTypeDbValue	hg/lib/landmarkUi.c	/^char *landmarkTypeDbValue[] = {$/;"	v
landmarkTypeLabel	hg/lib/landmarkUi.c	/^char *landmarkTypeLabel[] = {$/;"	v
landmarkTypeSize	hg/lib/landmarkUi.c	/^int landmarkTypeSize = ArraySize(landmarkTypeString);$/;"	v
landmarkTypeString	hg/lib/landmarkUi.c	/^char *landmarkTypeString[] = {$/;"	v
largeEnds	hg/inc/chr18deletions.h	/^    unsigned *largeEnds;	\/* Large end positions *\/$/;"	m	struct:chr18deletions
largeFileHandle	hg/lib/hdb.c	/^static struct largeSeqFile *largeFileHandle(struct sqlConnection *conn, HGID extId, char *extTable)$/;"	f	file:
largeFileList	hg/lib/hdb.c	/^static struct largeSeqFile *largeFileList;  \/* List of open large files. *\/$/;"	v	typeref:struct:largeSeqFile	file:
largeGapExtensionCost	jkOwnLib/xensmall.c	/^static int largeGapExtensionCost;$/;"	v	file:
largeSeqFile	hg/lib/hdb.c	/^struct largeSeqFile$/;"	s	file:
largeStarts	hg/inc/chr18deletions.h	/^    unsigned *largeStarts;	\/* Large start positions *\/$/;"	m	struct:chr18deletions
last	inc/snof.h	/^    char *last;$/;"	m	struct:snof
last	lib/fof.c	/^    struct fofRecord *last;      \/* Last record. *\/$/;"	m	struct:fof	typeref:struct:fof::fofRecord	file:
lastAccess	inc/portable.h	/^    time_t lastAccess;  \/* Last access time. *\/$/;"	m	struct:fileInfo
lastChar	lib/common.c	/^char lastChar(char *s)$/;"	f
lastChecked	inc/rudp.h	/^    time_t lastChecked;		\/* Last time we checked machine in seconds past 1972 *\/$/;"	m	struct:packetSeen
lastId	inc/rudp.h	/^    bits32 lastId;	\/* Id number of last message sent. *\/$/;"	m	struct:rudp
lastIdReceived	inc/rudp.h	/^    bits32 lastIdReceived; \/* Id number of last message received. *\/$/;"	m	struct:rudp
lastModifiedDate	hg/inc/variome.h	/^    char *lastModifiedDate;	\/* date item last updated *\/$/;"	m	struct:variome
lastModifiedDate	hg/inc/wikiTrack.h	/^    char *lastModifiedDate;	\/* date item last updated *\/$/;"	m	struct:wikiTrack
lastNonwhitespaceChar	lib/common.c	/^char *lastNonwhitespaceChar(char *s)$/;"	f
lastPoint	inc/gfxPoly.h	/^    struct gfxPoint *lastPoint;	\/* Last point in list. *\/$/;"	m	struct:gfxPoly	typeref:struct:gfxPoly::gfxPoint
lastPoint	inc/psPoly.h	/^    struct psPoint *lastPoint;	\/* Last point in list. *\/$/;"	m	struct:psPoly	typeref:struct:psPoly::psPoint
lastScores	inc/pairHmm.h	/^    int *lastScores;		\/* Scores for the previous row. *\/$/;"	m	struct:phmmState
lastTime	lib/verbose.c	/^static long lastTime = -1;  \/\/ previous call time.$/;"	v	file:
lastUse	hg/inc/cartDb.h	/^    char *lastUse;	\/* Last time this was used *\/$/;"	m	struct:cartDb
lastWordInLine	lib/common.c	/^char *lastWordInLine(char *line)$/;"	f
lazarus	hg/lib/web.c	/^static boolean lazarus = FALSE;$/;"	v	file:
lazarusLives	hg/lib/web.c	/^void lazarusLives(unsigned long newExpireSeconds)$/;"	f
ld	hg/inc/ld.h	/^struct ld$/;"	s
ld2	hg/inc/ld2.h	/^struct ld2$/;"	s
ld2CommaIn	hg/lib/ld2.c	/^struct ld2 *ld2CommaIn(char **pS, struct ld2 *ret)$/;"	f
ld2CommaOut	hg/inc/ld2.h	66;"	d
ld2Free	hg/lib/ld2.c	/^void ld2Free(struct ld2 **pEl)$/;"	f
ld2FreeList	hg/lib/ld2.c	/^void ld2FreeList(struct ld2 **pList)$/;"	f
ld2Load	hg/lib/ld2.c	/^struct ld2 *ld2Load(char **row)$/;"	f
ld2LoadAll	hg/lib/ld2.c	/^struct ld2 *ld2LoadAll(char *fileName) $/;"	f
ld2LoadAllByChar	hg/lib/ld2.c	/^struct ld2 *ld2LoadAllByChar(char *fileName, char chopper) $/;"	f
ld2LoadAllByTab	hg/inc/ld2.h	44;"	d
ld2Output	hg/lib/ld2.c	/^void ld2Output(struct ld2 *el, FILE *f, char sep, char lastSep) $/;"	f
ld2StaticLoad	hg/lib/ld2.c	/^void ld2StaticLoad(char **row, struct ld2 *ret)$/;"	f
ld2TabOut	hg/inc/ld2.h	63;"	d
ldCommaIn	hg/lib/ld.c	/^struct ld *ldCommaIn(char **pS, struct ld *ret)$/;"	f
ldCommaOut	hg/inc/ld.h	91;"	d
ldCount	hg/inc/ld2.h	/^    unsigned ldCount;	\/* Number of markers with LD values *\/$/;"	m	struct:ld2
ldFree	hg/lib/ld.c	/^void ldFree(struct ld **pEl)$/;"	f
ldFreeList	hg/lib/ld.c	/^void ldFreeList(struct ld **pList)$/;"	f
ldGapDefault	hg/inc/ldUi.h	13;"	d
ldInvDefault	hg/inc/ldUi.h	12;"	d
ldLoad	hg/lib/ld.c	/^struct ld *ldLoad(char **row)$/;"	f
ldLoadAll	hg/lib/ld.c	/^struct ld *ldLoadAll(char *fileName) $/;"	f
ldLoadAllByChar	hg/lib/ld.c	/^struct ld *ldLoadAllByChar(char *fileName, char chopper) $/;"	f
ldLoadAllByTab	hg/inc/ld.h	44;"	d
ldLoadByQuery	hg/lib/ld.c	/^struct ld *ldLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
ldOutDefault	hg/inc/ldUi.h	10;"	d
ldOutput	hg/lib/ld.c	/^void ldOutput(struct ld *el, FILE *f, char sep, char lastSep) $/;"	f
ldPosDefault	hg/inc/ldUi.h	9;"	d
ldSaveToDb	hg/lib/ld.c	/^void ldSaveToDb(struct sqlConnection *conn, struct ld *el, char *tableName, int updateSize)$/;"	f
ldSaveToDbEscaped	hg/lib/ld.c	/^void ldSaveToDbEscaped(struct sqlConnection *conn, struct ld *el, char *tableName, int updateSize)$/;"	f
ldStaticLoad	hg/lib/ld.c	/^void ldStaticLoad(char **row, struct ld *ret)$/;"	f
ldTabOut	hg/inc/ld.h	88;"	d
ldTrmDefault	hg/inc/ldUi.h	11;"	d
ldValDefault	hg/inc/ldUi.h	8;"	d
leCount	hg/inc/chr18deletions.h	/^    unsigned leCount;	\/* Number of large blocks *\/$/;"	m	struct:chr18deletions
leadingSpaces	inc/tokenizer.h	/^    int leadingSpaces;	 \/* Number of leading spaces before token. *\/$/;"	m	struct:tokenizer
leaf	lib/chainBlock.c	/^    struct kdLeaf *leaf;      \/* Extra info for leaves on tree. *\/$/;"	m	struct:kdBranch	typeref:struct:kdBranch::kdLeaf	file:
leafNodeSize	lib/cirTree.c	/^int leafNodeSize(int blockSize)$/;"	f
leafNodesFromItems	lib/hacTree.c	/^static struct hacTree *leafNodesFromItems(const struct slList *itemList, int itemCount,$/;"	f	file:
leafSlotSize	lib/cirTree.c	33;"	d	file:
leaveQuotes	inc/tokenizer.h	/^    bool leaveQuotes;	 \/* Leave quotes in string. *\/$/;"	m	struct:tokenizer
left	hg/inc/stanMad.h	/^    int left;	\/* The left coordinate of the spot on the scanned Microarray Image *\/$/;"	m	struct:stanMad
left	inc/fuzzyFind.h	/^    struct ffAli *left;   \/* Neighboring intervals. *\/$/;"	m	struct:ffAli	typeref:struct:ffAli::ffAli
left	inc/hacTree.h	/^    struct hacTree *left;       \/\/ Left child, NULL for leaf node$/;"	m	struct:hacTree	typeref:struct:hacTree::hacTree
left	inc/rbTree.h	/^    struct rbTreeNode *left, *right;		\/* Children. *\/$/;"	m	struct:rbTreeNode	typeref:struct:rbTreeNode::rbTreeNode
left	jkOwnLib/bandExt.c	/^   int left;$/;"	m	struct:score	file:
left	jkOwnLib/fuzzyFind.c	/^    struct protoGene *left;$/;"	m	struct:protoGene	typeref:struct:protoGene::protoGene	file:
left	lib/keys.c	/^    void *left;$/;"	m	struct:exp	file:
leftFlank	hg/inc/snpFasta.h	/^    char *leftFlank;	\/* Left flanking sequence *\/$/;"	m	struct:snpFasta
leftGood	lib/cda.c	/^static UBYTE leftGood(struct ffAli *ali)$/;"	f	file:
leftLabel	hg/inc/hgMaf.h	/^    char *leftLabel;            \/* Left label for hgTracks *\/$/;"	m	struct:consWiggle
leftLabel	hg/lib/genoLay.c	/^static void leftLabel(struct hvGfx *hvg, struct genoLay *gl,$/;"	f	file:
leftLabelWidth	hg/inc/genoLay.h	/^    int leftLabelWidth, rightLabelWidth;\/* Pixels for left\/right labels *\/$/;"	m	struct:genoLay
leftLabelWidth	hg/inc/trackLayout.h	/^    int leftLabelWidth;		\/* Width of left labels. *\/$/;"	m	struct:trackLayout
leftLen	inc/maf.h	/^    int leftLen;     \/* length related information for the previous alignment for the species *\/$/;"	m	struct:mafComp
leftList	hg/inc/genoLay.h	/^    struct slRef *leftList;		\/* Left chromosomes. *\/$/;"	m	struct:genoLay	typeref:struct:genoLay::slRef
leftMask	lib/bits.c	/^static Bits leftMask[8] = {0xFF, 0x7F, 0x3F, 0x1F,  0xF,  0x7,  0x3,  0x1,};$/;"	v	file:
leftNextMatch	jkOwnLib/fuzzyFind.c	/^static boolean leftNextMatch(struct ffAli *ali, DNA *ns, DNA *ne, DNA *hs, DNA *he, $/;"	f	file:
leftPrimer	hg/inc/bacCloneXRef.h	/^    char *leftPrimer;	\/* STS 5' primer sequence *\/$/;"	m	struct:bacCloneXRef
leftPrimer	hg/inc/rhMapInfo.h	/^    char *leftPrimer;	\/* Forward primer sequence *\/$/;"	m	struct:rhMapInfo
leftPrimer	hg/inc/rhMapZfishInfo.h	/^    char *leftPrimer;	\/* Forward primer sequence *\/$/;"	m	struct:rhMapZfishInfo
leftPrimer	hg/inc/stsInfo.h	/^    char *leftPrimer;	\/* 5' primer sequence *\/$/;"	m	struct:stsInfo
leftPrimer	hg/inc/stsInfo2.h	/^    char *leftPrimer;	\/* 5' primer sequence *\/$/;"	m	struct:stsInfo2
leftStatus	hg/inc/mafSummary.h	/^    char leftStatus[2];	\/* Gap\/break annotation for preceding block *\/$/;"	m	struct:mafSummary
leftStatus	inc/maf.h	/^    char leftStatus; \/* the syntenic status of the alignment before us vis a vis ourselves *\/$/;"	m	struct:mafComp
leftoverLetters	inc/trix.h	/^    int leftoverLetters;	\/* Number of leftover letters in words. *\/$/;"	m	struct:trixSearchResult
leftoverLetters	lib/trix.c	/^    int leftoverLetters;	\/* Number of letters at end of word not matched *\/$/;"	m	struct:trixHitPos	file:
len	hg/inc/dv.h	/^    unsigned len;	\/* Length *\/$/;"	m	struct:dv
len	hg/inc/pbStamp.h	/^    int len;	\/* number of x-y pairs *\/$/;"	m	struct:pbStamp
length	hg/inc/codeBlastScore.h	/^    unsigned length;	\/* Alignment length *\/$/;"	m	struct:codeBlastScore
length	hg/inc/cpgIsland.h	/^    unsigned length;	\/* Island Length *\/$/;"	m	struct:cpgIsland
length	hg/inc/cpgIslandExt.h	/^    unsigned length;	\/* Island Length *\/$/;"	m	struct:cpgIslandExt
length	hg/inc/sargassoSeaXra.h	/^    unsigned length;	\/* Alignment length *\/$/;"	m	struct:sargassoSeaXra
length	hg/inc/variant.h	/^    int length;$/;"	m	struct:allele
length	inc/phyloTree.h	/^    double length;	\/* length of the branch to this node *\/$/;"	m	struct:phyloName
lengthRangeExp	hg/lib/hgFind.c	/^char *lengthRangeExp = $/;"	v
less	inc/snof.h	/^    char *less;$/;"	m	struct:snof
letter	lib/dnaMotif.c	/^    char letter;	\/* The letter (upper case) *\/$/;"	m	struct:letterProb	file:
letter	lib/dnautil.c	/^    char letter;$/;"	m	struct:aminoAcidTable	file:
letterIx	jkOwnLib/xensmall.c	98;"	d	file:
letterProb	lib/dnaMotif.c	/^struct letterProb$/;"	s	file:
letterProbCmp	lib/dnaMotif.c	/^static int letterProbCmp(const void *va, const void *vb)$/;"	f	file:
letterProbFromMotifColumn	lib/dnaMotif.c	/^static struct letterProb *letterProbFromMotifColumn(struct dnaMotif *motif, int pos)$/;"	f	file:
letterProbNew	lib/dnaMotif.c	/^static struct letterProb *letterProbNew(char letter, double prob)$/;"	f	file:
letters	hg/lib/hui.c	/^    char letters[27];$/;"	m	struct:_membersForAll	file:
level	hg/inc/affyAllExonProbe.h	/^    char *level;	\/* ??? *\/$/;"	m	struct:affyAllExonProbe
level	hg/inc/gencodeGeneClass.h	/^    int level;	\/* Gencode level *\/$/;"	m	struct:gencodeGeneClass
level	hg/inc/netAlign.h	/^    unsigned level;	\/* Level of alignment *\/$/;"	m	struct:netAlign
level1	hg/inc/ecAttribute.h	/^    unsigned level1;	\/* level 1 EC code *\/$/;"	m	struct:ecAttribute
level1	hg/inc/ecCode.h	/^    unsigned level1;	\/* level 1 EC code *\/$/;"	m	struct:ecCode
level2	hg/inc/ecAttribute.h	/^    unsigned level2;	\/* level 2 EC code *\/$/;"	m	struct:ecAttribute
level2	hg/inc/ecCode.h	/^    unsigned level2;	\/* level 2 EC code *\/$/;"	m	struct:ecCode
level3	hg/inc/ecAttribute.h	/^    unsigned level3;	\/* level 3 EC code *\/$/;"	m	struct:ecAttribute
level3	hg/inc/ecCode.h	/^    unsigned level3;	\/* level 3 EC code *\/$/;"	m	struct:ecCode
level4	hg/inc/ecAttribute.h	/^    unsigned level4;	\/* level 4 EC code *\/$/;"	m	struct:ecAttribute
level4	hg/inc/ecCode.h	/^    unsigned level4;	\/* level 4 EC code *\/$/;"	m	struct:ecCode
levelList	inc/bbiFile.h	/^    struct bbiZoomLevel *levelList;	\/* List of zoom levels. *\/$/;"	m	struct:bbiFile	typeref:struct:bbiFile::bbiZoomLevel
levels	hg/lib/chainNetDbLoad.c	/^    struct cnFill **levels;	\/* Array to sort leaves by depth. *\/$/;"	m	struct:cnlHelper	typeref:struct:cnlHelper::cnFill	file:
lf	hg/inc/wiggle.h	/^    struct lineFile *lf;	\/*	file handle in case of file	*\/$/;"	m	struct:wiggleDataStream	typeref:struct:wiggleDataStream::lineFile
lf	hg/lib/genePredReader.c	/^    struct lineFile *lf;    \/* lineFile when reading from a file *\/$/;"	m	struct:genePredReader	typeref:struct:genePredReader::lineFile	file:
lf	hg/lib/pslReader.c	/^    struct lineFile *lf;    \/* lineFile when reading from a file *\/$/;"	m	struct:pslReader	typeref:struct:pslReader::lineFile	file:
lf	inc/blastParse.h	/^    struct lineFile *lf;                \/* File blast is in. *\/$/;"	m	struct:blastFile	typeref:struct:blastFile::lineFile
lf	inc/gff3.h	/^    struct lineFile *lf;                 \/* only set while parsing *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::lineFile
lf	inc/maf.h	/^    struct lineFile *lf; \/* Open line file if any. NULL except while parsing. *\/$/;"	m	struct:mafFile	typeref:struct:mafFile::lineFile
lf	inc/seg.h	/^	struct lineFile *lf;		\/* Open lineFile if any. *\/$/;"	m	struct:segFile	typeref:struct:segFile::lineFile
lf	inc/tokenizer.h	/^    struct lineFile *lf; \/* Underlying file. *\/$/;"	m	struct:tokenizer	typeref:struct:tokenizer::lineFile
lf	inc/trix.h	/^    struct lineFile *lf;	\/* Open file on first level index. *\/$/;"	m	struct:trix	typeref:struct:trix::lineFile
lf	inc/vcf.h	/^    struct lineFile *lf;	\/\/ Used only during parsing$/;"	m	struct:vcfFile	typeref:struct:vcfFile::lineFile
lfBigBedData	lib/lineFileOnBigBed.c	/^struct lfBigBedData$/;"	s	file:
lfCount	hg/inc/fosEndPairs.h	/^    unsigned lfCount;	\/* Number of linked features in the series *\/$/;"	m	struct:fosEndPairs
lfCount	hg/inc/lfs.h	/^    unsigned lfCount;	\/* Number of linked features in the series *\/$/;"	m	struct:lfs
lfCount	hg/inc/plasEndPairs.h	/^    unsigned lfCount;	\/* Number of linked features in the series *\/$/;"	m	struct:plasEndPairs
lfNames	hg/inc/fosEndPairs.h	/^    char **lfNames;	\/* Comma separated list of names of linked features *\/$/;"	m	struct:fosEndPairs
lfNames	hg/inc/lfs.h	/^    char **lfNames;	\/* Comma separated list of names of linked features *\/$/;"	m	struct:lfs
lfNames	hg/inc/plasEndPairs.h	/^    char **lfNames;	\/* Comma separated list of names of linked features *\/$/;"	m	struct:plasEndPairs
lfSizes	hg/inc/fosEndPairs.h	/^    unsigned *lfSizes;	\/* Comma separated list of sizes of each linked feature in genomic *\/$/;"	m	struct:fosEndPairs
lfSizes	hg/inc/lfs.h	/^    unsigned *lfSizes;	\/* Comma separated list of sizes of each linked feature in genomic *\/$/;"	m	struct:lfs
lfSizes	hg/inc/plasEndPairs.h	/^    unsigned *lfSizes;	\/* Comma separated list of sizes of each linked feature in genomic *\/$/;"	m	struct:plasEndPairs
lfStarts	hg/inc/fosEndPairs.h	/^    unsigned *lfStarts;	\/* Comma separated list of start positions of each linked feature in genomic *\/$/;"	m	struct:fosEndPairs
lfStarts	hg/inc/lfs.h	/^    unsigned *lfStarts;	\/* Comma separated list of start positions of each linked feature in genomic *\/$/;"	m	struct:lfs
lfStarts	hg/inc/plasEndPairs.h	/^    unsigned *lfStarts;	\/* Comma separated list of start positions of each linked feature in genomic *\/$/;"	m	struct:plasEndPairs
lfs	hg/inc/lfs.h	/^struct lfs$/;"	s
lfsCommaIn	hg/lib/lfs.c	/^struct lfs *lfsCommaIn(char **pS, struct lfs *ret)$/;"	f
lfsCommaOut	hg/inc/lfs.h	52;"	d
lfsFree	hg/lib/lfs.c	/^void lfsFree(struct lfs **pEl)$/;"	f
lfsFreeList	hg/lib/lfs.c	/^void lfsFreeList(struct lfs **pList)$/;"	f
lfsLoad	hg/lib/lfs.c	/^struct lfs *lfsLoad(char **row)$/;"	f
lfsLoadAll	hg/lib/lfs.c	/^struct lfs *lfsLoadAll(char *fileName) $/;"	f
lfsOutput	hg/lib/lfs.c	/^void lfsOutput(struct lfs *el, FILE *f, char sep, char lastSep) $/;"	f
lfsTabOut	hg/inc/lfs.h	49;"	d
lft_ofst	lib/gemfont.h	/^WORD	lft_ofst;$/;"	m	struct:font_hdr
lghtng_m	lib/gemfont.h	/^WORD	lghtng_m;	\/* Lightening mask.  Just use 0x55aa. *\/$/;"	m	struct:font_hdr
libId	hg/inc/imageClone.h	/^    unsigned libId;	\/* IMAGE library ID *\/$/;"	m	struct:imageClone
library	hg/inc/chicken13kInfo.h	/^    char *library;	\/* Library *\/$/;"	m	struct:chicken13kInfo
library	hg/inc/imageClone.h	/^    char *library;	\/* Clone collection (LLAM for amp-resistant libraries, LLCM, for chloramphenicol-resistant libraries, LLKM for kanamycin-resistant libraries.  No rearray locations are given.) *\/$/;"	m	struct:imageClone
lift	hg/inc/wiggle.h	/^    int lift;	\/*	lift all incoming coordinates by this amount	*\/$/;"	m	struct:wigEncodeOptions
liftOverBed	hg/lib/liftOver.c	/^int liftOverBed(char *fileName, struct hash *chainHash, $/;"	f
liftOverBedOrPositions	hg/lib/liftOver.c	/^int liftOverBedOrPositions(char *fileName, struct hash *chainHash, $/;"	f
liftOverBedPlus	hg/lib/liftOver.c	/^int liftOverBedPlus(char *fileName, struct hash *chainHash, double minMatch,  $/;"	f
liftOverChain	hg/inc/liftOverChain.h	/^struct liftOverChain$/;"	s
liftOverChainCommaIn	hg/lib/liftOverChain.c	/^struct liftOverChain *liftOverChainCommaIn(char **pS, struct liftOverChain *ret)$/;"	f
liftOverChainCommaOut	hg/inc/liftOverChain.h	92;"	d
liftOverChainExists	hg/lib/liftOverChain.c	/^boolean liftOverChainExists(struct sqlConnection *conn, char *tableName,$/;"	f
liftOverChainFile	hg/lib/liftOver.c	/^char *liftOverChainFile(char *fromDb, char *toDb)$/;"	f
liftOverChainForDb	hg/lib/liftOver.c	/^struct liftOverChain *liftOverChainForDb(char *fromDb)$/;"	f
liftOverChainFree	hg/lib/liftOverChain.c	/^void liftOverChainFree(struct liftOverChain **pEl)$/;"	f
liftOverChainFreeList	hg/lib/liftOverChain.c	/^void liftOverChainFreeList(struct liftOverChain **pList)$/;"	f
liftOverChainList	hg/lib/liftOver.c	/^struct liftOverChain *liftOverChainList()$/;"	f
liftOverChainListFiltered	hg/lib/liftOver.c	/^struct liftOverChain *liftOverChainListFiltered()$/;"	f
liftOverChainListForDbFiltered	hg/lib/liftOver.c	/^struct liftOverChain *liftOverChainListForDbFiltered(char *fromDb)$/;"	f
liftOverChainLoad	hg/lib/liftOverChain.c	/^struct liftOverChain *liftOverChainLoad(char **row)$/;"	f
liftOverChainLoadAll	hg/lib/liftOverChain.c	/^struct liftOverChain *liftOverChainLoadAll(char *fileName) $/;"	f
liftOverChainLoadAllByChar	hg/lib/liftOverChain.c	/^struct liftOverChain *liftOverChainLoadAllByChar(char *fileName, char chopper) $/;"	f
liftOverChainLoadAllByTab	hg/inc/liftOverChain.h	45;"	d
liftOverChainLoadByQuery	hg/lib/liftOverChain.c	/^struct liftOverChain *liftOverChainLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
liftOverChainOutput	hg/lib/liftOverChain.c	/^void liftOverChainOutput(struct liftOverChain *el, FILE *f, char sep, char lastSep) $/;"	f
liftOverChainRemove	hg/lib/liftOverChain.c	/^void liftOverChainRemove(struct sqlConnection *conn, char *tableName,$/;"	f
liftOverChainSaveToDb	hg/lib/liftOverChain.c	/^void liftOverChainSaveToDb(struct sqlConnection *conn, struct liftOverChain *el, char *tableName, int updateSize)$/;"	f
liftOverChainSaveToDbEscaped	hg/lib/liftOverChain.c	/^void liftOverChainSaveToDbEscaped(struct sqlConnection *conn, struct liftOverChain *el, char *tableName, int updateSize)$/;"	f
liftOverChainStaticLoad	hg/lib/liftOverChain.c	/^void liftOverChainStaticLoad(char **row, struct liftOverChain *ret)$/;"	f
liftOverChainTabOut	hg/inc/liftOverChain.h	89;"	d
liftOverErrHelp	hg/lib/liftOver.c	/^char *liftOverErrHelp()$/;"	f
liftOverFileType	hg/inc/liftOver.h	/^enum liftOverFileType$/;"	g
liftOverGenePred	hg/lib/liftOver.c	/^void liftOverGenePred(char *fileName, struct hash *chainHash, $/;"	f
liftOverGff	hg/lib/liftOver.c	/^void liftOverGff(char *fileName, struct hash *chainHash, $/;"	f
liftOverPositions	hg/lib/liftOver.c	/^int liftOverPositions(char *fileName, struct hash *chainHash, $/;"	f
liftOverPsl	hg/lib/liftOver.c	/^void liftOverPsl(char *fileName, struct hash *chainHash, $/;"	f
liftOverRemapRange	hg/lib/liftOver.c	/^char *liftOverRemapRange(struct hash *chainHash, double minRatio,$/;"	f
liftOverSample	hg/lib/liftOver.c	/^void liftOverSample(char *fileName, struct hash *chainHash, $/;"	f
liftOverSniff	hg/lib/liftOver.c	/^enum liftOverFileType liftOverSniff(char *fileName)$/;"	f
liftRange	hg/lib/liftOver.c	/^struct liftRange$/;"	s	file:
liftSpec	hg/inc/liftUp.h	/^struct liftSpec$/;"	s
liftToEnsembl	hg/lib/ensFace.c	/^static int liftToEnsembl(char *database, char *chrom)$/;"	f	file:
lightRainbowAtPos	lib/rainbow.c	/^struct rgbColor lightRainbowAtPos(double pos)$/;"	f
lightRainbowTable	lib/rainbow.c	/^static struct rgbColor lightRainbowTable[28] = {$/;"	v	typeref:struct:rgbColor	file:
limit	inc/rql.h	/^    int limit;		\/* If >= 0 then limits # of records returned. *\/$/;"	m	struct:rqlStatement
limit_0	hg/inc/wiggle.h	/^    double limit_0;		\/*	for constraint comparison	*\/$/;"	m	struct:wiggleDataStream
limit_1	hg/inc/wiggle.h	/^    double limit_1;		\/*	for constraint comparison	*\/$/;"	m	struct:wiggleDataStream
line	inc/basicBed.h	/^    char *line;                 \/* Rest of line. *\/$/;"	m	struct:bedLine
line	inc/vGfx.h	/^    void (*line)(void *v, $/;"	m	struct:vGfx
lineCount	hg/inc/genoLay.h	/^    int lineCount;			\/* Number of chromosome lines. *\/$/;"	m	struct:genoLay
lineCount	hg/lib/wigAsciiToBinary.c	/^static unsigned long lineCount = 0;	\/* counting all input lines	*\/$/;"	v	file:
lineEnd	inc/linefile.h	/^    int lineEnd;		\/* End of line in buffer. *\/$/;"	m	struct:lineFile
lineFile	inc/linefile.h	/^struct lineFile$/;"	s
lineFileAbort	lib/linefile.c	/^void lineFileAbort(struct lineFile *lf, char *format, ...)$/;"	f
lineFileAllInts	lib/linefile.c	/^void lineFileAllInts(struct lineFile *lf, char *words[], int wordIx, void *val,$/;"	f
lineFileAllIntsArray	lib/linefile.c	/^int lineFileAllIntsArray(struct lineFile *lf, char *words[], int wordIx, void *array, int arraySize,$/;"	f
lineFileAttach	lib/linefile.c	/^struct lineFile *lineFileAttach(char *fileName, bool zTerm, int fd)$/;"	f
lineFileCheckAllIntsNoAbort	lib/linefile.c	/^int lineFileCheckAllIntsNoAbort(char *s, void *val, $/;"	f
lineFileChop	inc/linefile.h	188;"	d
lineFileChopBin	hg/lib/liftOver.c	/^int lineFileChopBin(struct lineFile *lf, char *words[], int maxWord, $/;"	f
lineFileChopCharNext	lib/linefile.c	/^int lineFileChopCharNext(struct lineFile *lf, char sep, char *words[], int maxWords)$/;"	f
lineFileChopNext	lib/linefile.c	/^int lineFileChopNext(struct lineFile *lf, char *words[], int maxWords)$/;"	f
lineFileChopNextTab	lib/linefile.c	/^int lineFileChopNextTab(struct lineFile *lf, char *words[], int maxWords)$/;"	f
lineFileChopTab	inc/linefile.h	199;"	d
lineFileClose	lib/linefile.c	/^void lineFileClose(struct lineFile **pLf)$/;"	f
lineFileCloseBigBed	lib/lineFileOnBigBed.c	/^void lineFileCloseBigBed(struct lineFile *lf)$/;"	f
lineFileCloseList	lib/linefile.c	/^void lineFileCloseList(struct lineFile **pList)$/;"	f
lineFileDecompress	lib/linefile.c	/^struct lineFile *lineFileDecompress(char *fileName, bool zTerm)$/;"	f
lineFileDecompressFd	lib/linefile.c	/^struct lineFile *lineFileDecompressFd(char *name, bool zTerm, int fd)$/;"	f
lineFileDecompressMem	lib/linefile.c	/^struct lineFile *lineFileDecompressMem(bool zTerm, char *mem, long size)$/;"	f
lineFileExpandBuf	lib/linefile.c	/^void lineFileExpandBuf(struct lineFile *lf, int newSize)$/;"	f
lineFileExpectAtLeast	lib/linefile.c	/^void lineFileExpectAtLeast(struct lineFile *lf, int expecting, int got)$/;"	f
lineFileExpectWords	lib/linefile.c	/^void lineFileExpectWords(struct lineFile *lf, int expecting, int got)$/;"	f
lineFileLongNetRead	lib/linefile.c	/^int lineFileLongNetRead(int fd, char *buf, int size)$/;"	f
lineFileMayOpen	lib/linefile.c	/^struct lineFile *lineFileMayOpen(char *fileName, bool zTerm)$/;"	f
lineFileNeedDouble	lib/linefile.c	/^double lineFileNeedDouble(struct lineFile *lf, char *words[], int wordIx)$/;"	f
lineFileNeedFullNum	lib/linefile.c	/^int lineFileNeedFullNum(struct lineFile *lf, char *words[], int wordIx)$/;"	f
lineFileNeedNext	lib/linefile.c	/^void lineFileNeedNext(struct lineFile *lf, char **retStart, int *retSize)$/;"	f
lineFileNeedNum	lib/linefile.c	/^int lineFileNeedNum(struct lineFile *lf, char *words[], int wordIx)$/;"	f
lineFileNext	lib/linefile.c	/^boolean lineFileNext(struct lineFile *lf, char **retStart, int *retSize)$/;"	f
lineFileNextBigBed	lib/lineFileOnBigBed.c	/^boolean lineFileNextBigBed(struct lineFile *lf, char **retStart, int *retSize)$/;"	f
lineFileNextCharRow	lib/linefile.c	/^boolean lineFileNextCharRow(struct lineFile *lf, char sep, char *words[], int wordCount)$/;"	f
lineFileNextFull	lib/linefile.c	/^boolean lineFileNextFull(struct lineFile *lf, char **retFull, int *retFullSize,$/;"	f
lineFileNextFullReal	lib/linefile.c	/^boolean lineFileNextFullReal(struct lineFile *lf, char **retStart)$/;"	f
lineFileNextReal	lib/linefile.c	/^boolean lineFileNextReal(struct lineFile *lf, char **retStart)$/;"	f
lineFileNextRow	lib/linefile.c	/^boolean lineFileNextRow(struct lineFile *lf, char *words[], int wordCount)$/;"	f
lineFileNextRowTab	lib/linefile.c	/^boolean lineFileNextRowTab(struct lineFile *lf, char *words[], int wordCount)$/;"	f
lineFileOnBigBed	lib/lineFileOnBigBed.c	/^struct lineFile *lineFileOnBigBed(char *bigBedFileName)$/;"	f
lineFileOnString	lib/linefile.c	/^struct lineFile *lineFileOnString(char *name, bool zTerm, char *s)$/;"	f
lineFileOpen	lib/linefile.c	/^struct lineFile *lineFileOpen(char *fileName, bool zTerm)$/;"	f
lineFileParseHttpHeader	lib/linefile.c	/^boolean lineFileParseHttpHeader(struct lineFile *lf, char **hdr,$/;"	f
lineFileReadAll	lib/linefile.c	/^char *lineFileReadAll(struct lineFile *lf)$/;"	f
lineFileRemoveInitialCustomTrackLines	lib/linefile.c	/^void lineFileRemoveInitialCustomTrackLines(struct lineFile *lf)$/;"	f
lineFileReuse	lib/linefile.c	/^void lineFileReuse(struct lineFile *lf)$/;"	f
lineFileReuseFull	lib/linefile.c	/^void lineFileReuseFull(struct lineFile *lf)$/;"	f
lineFileRewind	lib/linefile.c	/^void lineFileRewind(struct lineFile *lf)$/;"	f
lineFileRow	inc/linefile.h	170;"	d
lineFileRowTab	inc/linefile.h	181;"	d
lineFileSeek	lib/linefile.c	/^void lineFileSeek(struct lineFile *lf, off_t offset, int whence)$/;"	f
lineFileSetMetaDataOutput	lib/linefile.c	/^void lineFileSetMetaDataOutput(struct lineFile *lf, FILE *f)$/;"	f
lineFileSetTabixRegion	lib/linefile.c	/^boolean lineFileSetTabixRegion(struct lineFile *lf, char *seqName, int start, int end)$/;"	f
lineFileSetUniqueMetaData	lib/linefile.c	/^void lineFileSetUniqueMetaData(struct lineFile *lf)$/;"	f
lineFileShort	lib/linefile.c	/^void lineFileShort(struct lineFile *lf)$/;"	f
lineFileSkip	lib/linefile.c	/^void lineFileSkip(struct lineFile *lf, int lineCount)$/;"	f
lineFileSkipToLineStartingWith	lib/linefile.c	/^char *lineFileSkipToLineStartingWith(struct lineFile *lf, char *start, int maxCount)$/;"	f
lineFileSlurpHttpBody	lib/linefile.c	/^struct dyString *lineFileSlurpHttpBody(struct lineFile *lf,$/;"	f
lineFileStdin	lib/linefile.c	/^struct lineFile *lineFileStdin(bool zTerm)$/;"	f
lineFileString	inc/linefile.h	132;"	d
lineFileTabixMayOpen	lib/linefile.c	/^struct lineFile *lineFileTabixMayOpen(char *fileOrUrl, bool zTerm)$/;"	f
lineFileTell	inc/linefile.h	135;"	d
lineFileUnexpectedEnd	lib/linefile.c	/^void lineFileUnexpectedEnd(struct lineFile *lf)$/;"	f
lineFileVaAbort	lib/linefile.c	/^void lineFileVaAbort(struct lineFile *lf, char *format, va_list args)$/;"	f
lineHeight	hg/inc/genoLay.h	/^    int lineHeight;			\/* Height for one line *\/$/;"	m	struct:genoLay
lineHeight	lib/gemfont.h	/^WORD    lineHeight;     \/* Distance to next line. *\/$/;"	m	struct:font_hdr
lineIx	hg/inc/joiner.h	/^    int lineIx;				\/* Line of dependency. *\/$/;"	m	struct:joinerDependency
lineIx	hg/inc/joiner.h	/^    int lineIx;			\/* Line index of start for error reporting *\/$/;"	m	struct:joinerField
lineIx	hg/inc/joiner.h	/^    int lineIx;			\/* Line index of start for error reporting *\/$/;"	m	struct:joinerSet
lineIx	inc/dtdParse.h	/^    int lineIx;			\/* Line where element occurs in dtd file. *\/$/;"	m	struct:dtdElement
lineIx	inc/linefile.h	/^    int lineIx;			\/* Current line. *\/$/;"	m	struct:lineFile
lineIx	inc/xp.h	/^    int lineIx;				\/* Number of current line. *\/$/;"	m	struct:xp
lineLen	inc/seqOut.h	/^    int lineLen;        \/* Number of characters between lines (often 50) *\/$/;"	m	struct:cfm
lineLen	lib/pairHmm.c	191;"	d	file:
lineLen	lib/pairHmm.c	300;"	d	file:
lineList	inc/gff.h	/^    struct gffLine *lineList;   \/* List of lines - lines may be in groupList instead. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::gffLine
lineList	inc/gff.h	/^    struct gffLine *lineList;  \/* List of lines in group. *\/$/;"	m	struct:gffGroup	typeref:struct:gffGroup::gffLine
lineNum	inc/gff3.h	/^    int lineNum;            \/* line number of record in file, or -1$/;"	m	struct:gff3Ann
lineNumber	inc/oldGff.h	/^    int lineNumber;$/;"	m	struct:gff
lineNumbers	inc/seqOut.h	/^    bool lineNumbers;   \/* True if write position at end of line. *\/$/;"	m	struct:cfm
linePt	inc/tokenizer.h	/^    char *linePt;        \/* Start position within current line. *\/$/;"	m	struct:tokenizer
lineSize	inc/seqOut.h	/^    int lineSize;$/;"	m	struct:baf
lineSize	jkOwnLib/xenbig.c	188;"	d	file:
lineStart	inc/linefile.h	/^    int lineStart;		\/* Offset of line in buffer. *\/$/;"	m	struct:lineFile
linesAt	hg/inc/chromGraph.h	/^    double *linesAt;		\/* Data values to label with horizontal line *\/$/;"	m	struct:chromGraphSettings
linesAtCount	hg/inc/chromGraph.h	/^    int linesAtCount;		\/* Number of horizontal labeling lines *\/$/;"	m	struct:chromGraphSettings
linkId	hg/inc/landmark.h	/^    unsigned linkId;	\/* key into the landmarkAttrLink table *\/$/;"	m	struct:landmarkAttr
linkageGp	hg/inc/rhMapInfo.h	/^    char *linkageGp;	\/* Linkage group to which the marker was mapped *\/$/;"	m	struct:rhMapInfo
linkageGp	hg/inc/rhMapZfishInfo.h	/^    char *linkageGp;	\/* Linkage group to which the marker was mapped *\/$/;"	m	struct:rhMapZfishInfo
linkedSize	inc/asParse.h	/^    struct asColumn *linkedSize;     \/* Column for linked size. *\/$/;"	m	struct:asColumn	typeref:struct:asColumn::asColumn
linkedSizeName	inc/asParse.h	/^    char *linkedSizeName;          \/* Points to variable that holds size of list. *\/$/;"	m	struct:asColumn
links	inc/shaRes.h	/^    int links;$/;"	m	struct:shaResNode
list	inc/shaRes.h	/^    struct shaResList *list;$/;"	m	struct:shaResNode	typeref:struct:shaResNode::shaResList
list	lib/bbiRead.c	/^    struct bbiChromInfo *list;		\/* The list we are building. *\/$/;"	m	struct:chromNameCallbackContext	typeref:struct:chromNameCallbackContext::bbiChromInfo	file:
list	lib/memalloc.c	/^    struct dlList *list;	 \/* List of allocated blocks. *\/$/;"	m	struct:memTracker	typeref:struct:memTracker::dlList	file:
listDir	lib/osunix.c	/^struct slName *listDir(char *dir, char *pattern)$/;"	f
listDir	lib/oswin9x.c	/^struct slName *listDir(char *dir, char *pattern)$/;"	f
listDirRegEx	lib/osunix.c	/^struct slName *listDirRegEx(char *dir, char *regEx, int flags)$/;"	f
listDirX	lib/osunix.c	/^struct fileInfo *listDirX(char *dir, char *pattern, boolean fullPath)$/;"	f
listDirXExt	lib/osunix.c	/^struct fileInfo *listDirXExt(char *dir, char *pattern, boolean fullPath, boolean ignoreStatFailures)$/;"	f
listSizes	inc/genoFind.h	/^    bits32 *listSizes;                   \/* Size of list for each N-mer *\/$/;"	m	struct:genoFind
listSizes	jkOwnLib/patSpace.c	/^    psBits *listSizes;                   \/* Size of list for each 10-mer *\/$/;"	m	struct:patSpace	file:
lists	inc/genoFind.h	/^    bits32 **lists;                      \/* A list for each N-mer. Used if$/;"	m	struct:genoFind
lists	jkOwnLib/patSpace.c	/^    psBits **lists;                      \/* A list for each 10-mer *\/$/;"	m	struct:patSpace	file:
lists	lib/colHash.h	/^    struct colHashEl *lists[4*256];	\/* Hash chains. *\/$/;"	m	struct:colHash	typeref:struct:colHash::colHashEl
listyName	inc/asParse.h	/^    char *listyName;               \/* What functions that load a list are called. *\/$/;"	m	struct:asTypeInfo
llaInfo	hg/inc/llaInfo.h	/^struct llaInfo$/;"	s
llaInfoCommaIn	hg/lib/llaInfo.c	/^struct llaInfo *llaInfoCommaIn(char **pS, struct llaInfo *ret)$/;"	f
llaInfoCommaOut	hg/inc/llaInfo.h	99;"	d
llaInfoFree	hg/lib/llaInfo.c	/^void llaInfoFree(struct llaInfo **pEl)$/;"	f
llaInfoFreeList	hg/lib/llaInfo.c	/^void llaInfoFreeList(struct llaInfo **pList)$/;"	f
llaInfoLoad	hg/lib/llaInfo.c	/^struct llaInfo *llaInfoLoad(char **row)$/;"	f
llaInfoLoadAll	hg/lib/llaInfo.c	/^struct llaInfo *llaInfoLoadAll(char *fileName) $/;"	f
llaInfoLoadAllByChar	hg/lib/llaInfo.c	/^struct llaInfo *llaInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
llaInfoLoadAllByTab	hg/inc/llaInfo.h	52;"	d
llaInfoLoadByQuery	hg/lib/llaInfo.c	/^struct llaInfo *llaInfoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
llaInfoOutput	hg/lib/llaInfo.c	/^void llaInfoOutput(struct llaInfo *el, FILE *f, char sep, char lastSep) $/;"	f
llaInfoSaveToDb	hg/lib/llaInfo.c	/^void llaInfoSaveToDb(struct sqlConnection *conn, struct llaInfo *el, char *tableName, int updateSize)$/;"	f
llaInfoSaveToDbEscaped	hg/lib/llaInfo.c	/^void llaInfoSaveToDbEscaped(struct sqlConnection *conn, struct llaInfo *el, char *tableName, int updateSize)$/;"	f
llaInfoTabOut	hg/inc/llaInfo.h	96;"	d
lm	hg/lib/hgBam.c	/^    struct lm *lm;	\/* Local memory pool to allocate into *\/$/;"	m	struct:bamToSamHelper	typeref:struct:bamToSamHelper::lm	file:
lm	inc/genomeRangeTree.h	/^    struct lm *lm;                 \/* Local memory pool for tree nodes and ranges. *\/$/;"	m	struct:genomeRangeTree	typeref:struct:genomeRangeTree::lm
lm	inc/hash.h	/^    struct lm *lm;	\/* Local memory pool. *\/$/;"	m	struct:hash	typeref:struct:hash::lm
lm	inc/metaWig.h	/^    struct lm *lm;			\/* Where sectionList is allocated. *\/$/;"	m	struct:metaWig	typeref:struct:metaWig::lm
lm	inc/rbTree.h	/^    struct lm *lm;	                        \/* Local memory pool. *\/$/;"	m	struct:rbTree	typeref:struct:rbTree::lm
lm	lib/boxClump.c	/^static struct lm *lm;$/;"	v	typeref:struct:lm	file:
lm	lib/localmem.c	/^struct lm$/;"	s	file:
lm	lib/snofmake.c	/^static struct lm *lm;$/;"	v	typeref:struct:lm	file:
lm2Signature	inc/sig.h	36;"	d
lmAlloc	lib/localmem.c	/^void *lmAlloc(struct lm *lm, size_t size)$/;"	f
lmAllocArray	inc/localmem.h	45;"	d
lmAllocVar	inc/localmem.h	41;"	d
lmBlock	lib/localmem.c	/^struct lmBlock$/;"	s	file:
lmCleanup	lib/localmem.c	/^void lmCleanup(struct lm **pLm)$/;"	f
lmCloneBed	lib/basicBed.c	/^struct bed *lmCloneBed(struct bed *bed, struct lm *lm)$/;"	f
lmCloneFirstWord	lib/localmem.c	/^char *lmCloneFirstWord(struct lm *lm, char *line)$/;"	f
lmCloneMem	lib/localmem.c	/^void *lmCloneMem(struct lm *lm, void *pt, size_t size)$/;"	f
lmCloneSomeWord	lib/localmem.c	/^char *lmCloneSomeWord(struct lm *lm, char *line, int wordIx)$/;"	f
lmCloneString	lib/localmem.c	/^char *lmCloneString(struct lm *lm, char *string)$/;"	f
lmCloneStringZ	lib/localmem.c	/^char *lmCloneStringZ(struct lm *lm, char *string, int size)$/;"	f
lmInit	lib/localmem.c	/^struct lm *lmInit(int blockSize)$/;"	f
lmSlName	lib/localmem.c	/^struct slName *lmSlName(struct lm *lm, char *name)$/;"	f
lo	lib/chainBlock.c	/^    struct kdBranch *lo;      \/* Pointer to children with lower coordinates. *\/$/;"	m	struct:kdBranch	typeref:struct:kdBranch::kdBranch	file:
loFiFromCodingCost	jkOwnLib/xensmall.c	/^static int loFiFromCodingCost;$/;"	v	file:
loFiFromHiFiCost	jkOwnLib/xensmall.c	/^static int loFiFromHiFiCost;$/;"	v	file:
loFiFromInsertCost	jkOwnLib/xensmall.c	/^static int loFiFromInsertCost;$/;"	v	file:
loFiIx	jkOwnLib/xensmall.c	/^    loFiIx,$/;"	e	enum:sevenStateIx	file:
loFiMatchTable	jkOwnLib/xensmall.c	/^static int loFiMatchTable[26*32];$/;"	v	file:
loFiSmallGapCost	jkOwnLib/xensmall.c	/^static int loFiSmallGapCost;$/;"	v	file:
loadAllBands	hg/lib/hgFind.c	/^static struct cytoBand *loadAllBands(char *db)$/;"	f	file:
loadAndLookupTrackDb	hg/lib/hdb.c	/^static struct trackDb *loadAndLookupTrackDb(struct sqlConnection *conn,$/;"	f	file:
loadAndValidateBed	lib/basicBed.c	/^void loadAndValidateBed(char *row[], int wordCount, int fieldCount, struct lineFile *lf, struct bed * bed, struct asObject *as, boolean isCt)$/;"	f
loadCgiOverHash	hg/lib/cart.c	/^static void loadCgiOverHash(struct cart *cart, struct hash *oldVars)$/;"	f	file:
loadDb	hg/lib/cart.c	/^struct cartDb *loadDb(struct sqlConnection *conn, char *table, int id, boolean *found)$/;"	f
loadDbInformation	hg/lib/coordConv.c	/^struct dbDb *loadDbInformation(char *database)$/;"	f
loadFindSpecs	hg/lib/hgFindSpecCustom.c	/^static struct hgFindSpec *loadFindSpecs(char *db, char *where)$/;"	f	file:
loadFindSpecsTbl	hg/lib/hgFindSpecCustom.c	/^static struct hgFindSpec *loadFindSpecsTbl(char *db, char *tblSpec, char *where)$/;"	f	file:
loadGrps	hg/lib/hdb.c	/^static struct grp* loadGrps(char *db, char *confName, char *defaultTbl)$/;"	f	file:
loadHashT3Ranges	jkOwnLib/gfBlatLib.c	/^static void loadHashT3Ranges(struct gfRange *rangeList, $/;"	f	file:
loadMark2	hg/lib/dnaMarkovSql.c	/^boolean loadMark2(struct sqlConnection *conn, char *table, char *chrom, unsigned start, unsigned end, double mark2[5][5][5])$/;"	f
loadNt4	lib/nt4.c	/^struct nt4Seq *loadNt4(char *fileName, char *seqName)$/;"	f
loadOneTrackDb	hg/lib/hdb.c	/^static boolean loadOneTrackDb(char *db, char *where, char *tblSpec,$/;"	f	file:
loadPsl	lib/pslTbl.c	/^static void loadPsl(struct pslTbl *pslTbl, char **row)$/;"	f	file:
loadPsls	lib/pslTbl.c	/^static void loadPsls(struct pslTbl *pslTbl, char *pslFile)$/;"	f	file:
loadSeqFromTable	hg/lib/hdb.c	/^static struct dnaSeq *loadSeqFromTable(struct sqlConnection *conn,$/;"	f	file:
loadTrackDb	hg/lib/hdb.c	/^static struct trackDb *loadTrackDb(char *db, char *where)$/;"	f	file:
loadTrackDbForTrack	hg/lib/hdb.c	/^static struct trackDb *loadTrackDbForTrack(struct sqlConnection *conn,$/;"	f	file:
loadUpDnaSeqs	hg/lib/coordConv.c	/^void loadUpDnaSeqs(struct coordConvRep *ccr)$/;"	f
loader	hg/inc/customFactory.h	/^     struct customTrack * (*loader)(struct customFactory *fac, $/;"	m	struct:customFactory	typeref:struct:customFactory::loader
locType	hg/inc/snp.h	/^    char *locType;	\/* How the variant affects the reference sequence *\/$/;"	m	struct:snp
locType	hg/inc/snp125.h	/^    char *locType;	\/* How the variant affects the reference sequence *\/$/;"	m	struct:snp125
locType	hg/inc/snp125.h	/^    char *locType;	\/* How the variant affects the reference sequence *\/$/;"	m	struct:snp125Extended
locType	hg/inc/snp132Ext.h	/^    char *locType;	\/* Type of mapping inferred from size on reference; may not agree with class *\/$/;"	m	struct:snp132Ext
locType	hg/inc/snpTmp.h	/^    char *locType;	\/* range, exact, between *\/$/;"	m	struct:snpTmp
localAccess	lib/udc.c	/^    bits64 localAccess;		\/* Time we last accessed data. *\/$/;"	m	struct:udcBitmap	file:
localMem	lib/fof.c	/^struct lm *localMem;    \/* Local (fast) memory pool. *\/$/;"	v	typeref:struct:lm
localNeedMem	lib/snofmake.c	/^static void *localNeedMem(int size)$/;"	f	file:
localUpdate	lib/udc.c	/^    bits64 localUpdate;		\/* Time we last fetched new data into cache. *\/$/;"	m	struct:udcBitmap	file:
location	hg/inc/gv.h	/^    char *location;	\/* enum('intron', 'exon', '5'' UTR', '3'' UTR', 'not within known transcription unit') *\/$/;"	m	struct:gv
location	hg/inc/protVar.h	/^    char *location;	\/* enum('intron', 'exon', '5'' UTR', '3'' UTR', 'not within known transcription unit') *\/$/;"	m	struct:protVar
loci	hg/inc/mrnaMisMatch.h	/^    unsigned *loci;	\/* loci index for each mismatch *\/$/;"	m	struct:mrnaMisMatch
locus	hg/inc/sanger22extra.h	/^    char *locus;	\/* Possibly biological short name *\/$/;"	m	struct:sanger22extra
locus	hg/inc/yaleGencodeAssoc.h	/^    char *locus;	\/* Gencode locus id *\/$/;"	m	struct:yaleGencodeAssoc
locusDbs	hg/inc/hgnc.h	/^    char *locusDbs;	\/* Locus-Specific Databases *\/$/;"	m	struct:hgnc
locusGroup	hg/inc/hgnc.h	/^    char *locusGroup;	\/* Locus Group *\/$/;"	m	struct:hgnc
locusLinkId	hg/inc/knownMore.h	/^    unsigned locusLinkId;	\/* Locus link ID *\/$/;"	m	struct:knownMore
locusLinkId	hg/inc/refLink.h	/^    unsigned locusLinkId;	\/* Locus Link ID *\/$/;"	m	struct:refLink
locusSyn	hg/lib/snp125Ui.c	/^static char *locusSyn[] =$/;"	v	file:
locusType	hg/inc/hgnc.h	/^    char *locusType;	\/* Locus Type *\/$/;"	m	struct:hgnc
lod	hg/inc/hapmapLd.h	/^    char *lod;	\/* Encoded lists of LOD values *\/$/;"	m	struct:hapmapLd
lod	hg/inc/ld.h	/^    char *lod;	\/* Encoded lists of LOD values *\/$/;"	m	struct:ld
lod	hg/inc/ld2.h	/^    char *lod;	\/* Encoded list (length=ldCount) of LOD values *\/$/;"	m	struct:ld2
log4	lib/seqStats.c	9;"	d	file:
logAbortHandler	lib/log.c	/^static void logAbortHandler()$/;"	f	file:
logBase2	inc/common.h	1167;"	d
logCgiToStderr	lib/cheapcgi.c	/^void logCgiToStderr()$/;"	f
logDaemonize	lib/log.c	/^void logDaemonize(char *progName)$/;"	f
logDebug	lib/log.c	/^void logDebug(char *format, ...)$/;"	f
logDebugVa	lib/log.c	/^void logDebugVa(char *format, va_list args)$/;"	f
logError	lib/log.c	/^void logError(char *format, ...)$/;"	f
logErrorVa	lib/log.c	/^void logErrorVa(char *format, va_list args)$/;"	f
logFile	lib/verbose.c	/^static FILE *logFile;	\/* File to log to. *\/$/;"	v	file:
logFilePrint	lib/log.c	/^static void logFilePrint(char* level, char *format, va_list args)$/;"	f	file:
logGetFile	lib/log.c	/^FILE *logGetFile()$/;"	f
logInfo	lib/log.c	/^void logInfo(char *format, ...)$/;"	f
logInfoVa	lib/log.c	/^void logInfoVa(char *format, va_list args)$/;"	f
logOdds	hg/inc/easyGene.h	/^    float logOdds;	\/* Log odds *\/$/;"	m	struct:easyGene
logOdds	inc/hgap.h	/^    int logOdds;          \/* Log odds style score - scaled x 1000. *\/$/;"	m	struct:hgAliHit
logOdds	inc/hgap.h	/^    int logOdds;          \/* Log odds style score - scaled x 1000. *\/$/;"	m	struct:hgAlignment
logOdds	inc/hgap.h	/^    int logOdds;          \/* Log odds style score - scaled x 1000. *\/$/;"	m	struct:hgBoundedHit
logOdds	inc/hgap.h	/^    int logOdds;          \/* Log odds style score - scaled x 1000. *\/$/;"	m	struct:hgScoredHit
logOpenFile	lib/log.c	/^void logOpenFile(char* program, char *logFile)$/;"	f
logOpenSyslog	lib/log.c	/^void logOpenSyslog(char* program, char *facility)$/;"	f
logScaleFactor	inc/hmmstats.h	14;"	d
logSetMinPriority	lib/log.c	/^void logSetMinPriority(char *minPriority)$/;"	f
logVerbosity	lib/verbose.c	/^static int logVerbosity = 1;	\/* The level of log verbosity.  0 is silent. *\/$/;"	v	file:
logWarn	lib/log.c	/^void logWarn(char *format, ...)$/;"	f
logWarnHandler	lib/log.c	/^static void logWarnHandler(char *format, va_list args)$/;"	f	file:
logWarnVa	lib/log.c	/^void logWarnVa(char *format, va_list args)$/;"	f
logicTypeSuffix	hg/inc/hui.h	/^   char *logicTypeSuffix;  \/* cgi variable suffix that indicates logic. *\/$/;"	m	struct:mrnaUiData
loginSystemEnabled	hg/lib/wikiLink.c	/^boolean loginSystemEnabled()$/;"	f
loginSystemName	hg/lib/wikiLink.c	/^char *loginSystemName()$/;"	f
longCount	lib/gapCalc.c	/^    int longCount;	\/* Number of long positions overall in longPos. *\/$/;"	m	struct:gapCalc	file:
longLabel	hg/inc/growthCondition.h	/^    char *longLabel;	\/* Longer description of growth condition *\/$/;"	m	struct:growthCondition
longLabel	hg/inc/trackDb.h	/^    char *longLabel;	\/* Long label displayed in middle *\/$/;"	m	struct:trackDb
longLabel	hg/inc/trackHub.h	/^    char *longLabel;	\/* Hub long label. Not allocated here. *\/$/;"	m	struct:trackHub
longLabel	hg/inc/trackTable.h	/^    char *longLabel;	\/* Long label displayed in middle *\/$/;"	m	struct:trackTable
longPos	lib/gapCalc.c	/^    int *longPos;\/* Table of positions to interpolate between for larger gaps. *\/$/;"	m	struct:gapCalc	file:
longSeqTm	lib/oligoTm.c	/^double longSeqTm(char *s, int start, int len, double salt_conc)$/;"	f
longestNameSize	lib/snofmake.c	/^static int longestNameSize(struct offsetList *list)$/;"	f	file:
looksCorrupted	hg/lib/cart.c	/^static boolean looksCorrupted(struct cartDb *cdb)$/;"	f	file:
lookupChromInfo	hg/lib/hdb.c	/^static struct chromInfo *lookupChromInfo(char *db, char *chrom)$/;"	f	file:
lookupCodon	lib/dnautil.c	/^AA lookupCodon(DNA *dna)$/;"	f
lookupMitoCodon	lib/dnautil.c	/^AA lookupMitoCodon(DNA *dna)$/;"	f
lookupOtherDb	hg/lib/hVarSubst.c	/^static char *lookupOtherDb(char *desc, struct trackDb *tdb, char *varName)$/;"	f	file:
lookupTrackDbSubVar	hg/lib/hVarSubst.c	/^static char *lookupTrackDbSubVar(char *desc, struct trackDb *tdb, char *settingName, char *varName)$/;"	f	file:
lowType	inc/asParse.h	/^    struct asTypeInfo *lowType;   \/* Root type info. *\/$/;"	m	struct:asColumn	typeref:struct:asColumn::asTypeInfo
lowelabArkinOperonScore	hg/inc/lowelabArkinOperonScore.h	/^struct lowelabArkinOperonScore$/;"	s
lowelabArkinOperonScoreCommaIn	hg/lib/lowelabArkinOperonScore.c	/^struct lowelabArkinOperonScore *lowelabArkinOperonScoreCommaIn(char **pS, struct lowelabArkinOperonScore *ret)$/;"	f
lowelabArkinOperonScoreCommaOut	hg/inc/lowelabArkinOperonScore.h	59;"	d
lowelabArkinOperonScoreFree	hg/lib/lowelabArkinOperonScore.c	/^void lowelabArkinOperonScoreFree(struct lowelabArkinOperonScore **pEl)$/;"	f
lowelabArkinOperonScoreFreeList	hg/lib/lowelabArkinOperonScore.c	/^void lowelabArkinOperonScoreFreeList(struct lowelabArkinOperonScore **pList)$/;"	f
lowelabArkinOperonScoreLoad	hg/lib/lowelabArkinOperonScore.c	/^struct lowelabArkinOperonScore *lowelabArkinOperonScoreLoad(char **row)$/;"	f
lowelabArkinOperonScoreLoadAll	hg/lib/lowelabArkinOperonScore.c	/^struct lowelabArkinOperonScore *lowelabArkinOperonScoreLoadAll(char *fileName) $/;"	f
lowelabArkinOperonScoreLoadAllByChar	hg/lib/lowelabArkinOperonScore.c	/^struct lowelabArkinOperonScore *lowelabArkinOperonScoreLoadAllByChar(char *fileName, char chopper) $/;"	f
lowelabArkinOperonScoreLoadAllByTab	hg/inc/lowelabArkinOperonScore.h	37;"	d
lowelabArkinOperonScoreOutput	hg/lib/lowelabArkinOperonScore.c	/^void lowelabArkinOperonScoreOutput(struct lowelabArkinOperonScore *el, FILE *f, char sep, char lastSep) $/;"	f
lowelabArkinOperonScoreStaticLoad	hg/lib/lowelabArkinOperonScore.c	/^void lowelabArkinOperonScoreStaticLoad(char **row, struct lowelabArkinOperonScore *ret)$/;"	f
lowelabArkinOperonScoreTabOut	hg/inc/lowelabArkinOperonScore.h	56;"	d
lowelabPfamHits	hg/inc/lowelabPfamHit.h	/^struct lowelabPfamHits$/;"	s
lowelabPfamHits	hg/lib/lowelabPfamHit.h	/^struct lowelabPfamHits$/;"	s
lowelabPfamHitsCommaIn	hg/lib/lowelabPfamHit.c	/^struct lowelabPfamHits *lowelabPfamHitsCommaIn(char **pS, struct lowelabPfamHits *ret)$/;"	f
lowelabPfamHitsCommaOut	hg/inc/lowelabPfamHit.h	66;"	d
lowelabPfamHitsCommaOut	hg/lib/lowelabPfamHit.h	66;"	d
lowelabPfamHitsFree	hg/lib/lowelabPfamHit.c	/^void lowelabPfamHitsFree(struct lowelabPfamHits **pEl)$/;"	f
lowelabPfamHitsFreeList	hg/lib/lowelabPfamHit.c	/^void lowelabPfamHitsFreeList(struct lowelabPfamHits **pList)$/;"	f
lowelabPfamHitsLoad	hg/lib/lowelabPfamHit.c	/^struct lowelabPfamHits *lowelabPfamHitsLoad(char **row)$/;"	f
lowelabPfamHitsLoadAll	hg/lib/lowelabPfamHit.c	/^struct lowelabPfamHits *lowelabPfamHitsLoadAll(char *fileName) $/;"	f
lowelabPfamHitsLoadAllByChar	hg/lib/lowelabPfamHit.c	/^struct lowelabPfamHits *lowelabPfamHitsLoadAllByChar(char *fileName, char chopper) $/;"	f
lowelabPfamHitsLoadAllByTab	hg/inc/lowelabPfamHit.h	44;"	d
lowelabPfamHitsLoadAllByTab	hg/lib/lowelabPfamHit.h	44;"	d
lowelabPfamHitsOutput	hg/lib/lowelabPfamHit.c	/^void lowelabPfamHitsOutput(struct lowelabPfamHits *el, FILE *f, char sep, char lastSep) $/;"	f
lowelabPfamHitsStaticLoad	hg/lib/lowelabPfamHit.c	/^void lowelabPfamHitsStaticLoad(char **row, struct lowelabPfamHits *ret)$/;"	f
lowelabPfamHitsTabOut	hg/inc/lowelabPfamHit.h	63;"	d
lowelabPfamHitsTabOut	hg/lib/lowelabPfamHit.h	63;"	d
lowelabTIGROperonScore	hg/inc/lowelabTIGROperonScore.h	/^struct lowelabTIGROperonScore$/;"	s
lowelabTIGROperonScoreCommaIn	hg/lib/lowelabTIGROperonScore.c	/^struct lowelabTIGROperonScore *lowelabTIGROperonScoreCommaIn(char **pS, struct lowelabTIGROperonScore *ret)$/;"	f
lowelabTIGROperonScoreCommaOut	hg/inc/lowelabTIGROperonScore.h	60;"	d
lowelabTIGROperonScoreFree	hg/lib/lowelabTIGROperonScore.c	/^void lowelabTIGROperonScoreFree(struct lowelabTIGROperonScore **pEl)$/;"	f
lowelabTIGROperonScoreFreeList	hg/lib/lowelabTIGROperonScore.c	/^void lowelabTIGROperonScoreFreeList(struct lowelabTIGROperonScore **pList)$/;"	f
lowelabTIGROperonScoreLoad	hg/lib/lowelabTIGROperonScore.c	/^struct lowelabTIGROperonScore *lowelabTIGROperonScoreLoad(char **row)$/;"	f
lowelabTIGROperonScoreLoadAll	hg/lib/lowelabTIGROperonScore.c	/^struct lowelabTIGROperonScore *lowelabTIGROperonScoreLoadAll(char *fileName) $/;"	f
lowelabTIGROperonScoreLoadAllByChar	hg/lib/lowelabTIGROperonScore.c	/^struct lowelabTIGROperonScore *lowelabTIGROperonScoreLoadAllByChar(char *fileName, char chopper) $/;"	f
lowelabTIGROperonScoreLoadAllByTab	hg/inc/lowelabTIGROperonScore.h	38;"	d
lowelabTIGROperonScoreOutput	hg/lib/lowelabTIGROperonScore.c	/^void lowelabTIGROperonScoreOutput(struct lowelabTIGROperonScore *el, FILE *f, char sep, char lastSep) $/;"	f
lowelabTIGROperonScoreStaticLoad	hg/lib/lowelabTIGROperonScore.c	/^void lowelabTIGROperonScoreStaticLoad(char **row, struct lowelabTIGROperonScore *ret)$/;"	f
lowelabTIGROperonScoreTabOut	hg/inc/lowelabTIGROperonScore.h	57;"	d
lowerLimit	hg/inc/wiggle.h	/^    double lowerLimit;	\/* lowest data value in this block *\/$/;"	m	struct:wiggle
lowerLimit	hg/inc/wiggle.h	/^    double lowerLimit;	\/* lowest data value in this block *\/$/;"	m	struct:wiggleData
lowerLimit	hg/inc/wiggle.h	/^    double lowerLimit;	\/* lowest data value in this block *\/$/;"	m	struct:wiggleStats
lowerLimit	hg/lib/wiggleUtils.c	/^    double lowerLimit;	\/* lowest data value in this block *\/$/;"	m	struct:wigStatsAcc	file:
lowerToN	lib/dnautil.c	/^void lowerToN(char *s, int size)$/;"	f
lpExt	jkOwnLib/bandExt.c	34;"	d	file:
lrtAllIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtAllIsFdr;	\/* A: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtAllPValue	hg/inc/mammalPsg.h	/^    float lrtAllPValue;	\/* A: LRT P-value  on all branches *\/$/;"	m	struct:mammalPsg
lrtChimpIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtChimpIsFdr;	\/* G: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtChimpPValue	hg/inc/mammalPsg.h	/^    float lrtChimpPValue;	\/* G: LRT P-value  on chimp lineage *\/$/;"	m	struct:mammalPsg
lrtHominidIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtHominidIsFdr;	\/* H: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtHominidPValue	hg/inc/mammalPsg.h	/^    float lrtHominidPValue;	\/* H: LRT P-value  on branch leading to hominids *\/$/;"	m	struct:mammalPsg
lrtHumanIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtHumanIsFdr;	\/* F: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtHumanPValue	hg/inc/mammalPsg.h	/^    float lrtHumanPValue;	\/* F: LRT P-value  on human lineage *\/$/;"	m	struct:mammalPsg
lrtMacaqueIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtMacaqueIsFdr;	\/* I: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtMacaquePValue	hg/inc/mammalPsg.h	/^    float lrtMacaquePValue;	\/* I: LRT P-value  on human lineage *\/$/;"	m	struct:mammalPsg
lrtPrimateBrIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtPrimateBrIsFdr;	\/* B: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtPrimateBrPValue	hg/inc/mammalPsg.h	/^    float lrtPrimateBrPValue;	\/* B: LRT P-value  on branch leading to primates *\/$/;"	m	struct:mammalPsg
lrtPrimateClIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtPrimateClIsFdr;	\/* C: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtPrimateClPValue	hg/inc/mammalPsg.h	/^    float lrtPrimateClPValue;	\/* C: LRT P-value  on primate clade *\/$/;"	m	struct:mammalPsg
lrtRodentBrIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtRodentBrIsFdr;	\/* D: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtRodentBrPValue	hg/inc/mammalPsg.h	/^    float lrtRodentBrPValue;	\/* D: LRT P-value  on branch leading to rodents *\/$/;"	m	struct:mammalPsg
lrtRodentClIsFdr	hg/inc/mammalPsg.h	/^    unsigned char lrtRodentClIsFdr;	\/* E: true if FDR significant *\/$/;"	m	struct:mammalPsg
lrtRodentClPValue	hg/inc/mammalPsg.h	/^    float lrtRodentClPValue;	\/* E: LRT P-value  on rodent clade *\/$/;"	m	struct:mammalPsg
lsCount	hg/inc/chr18deletions.h	/^    unsigned lsCount;	\/* Number of large blocks *\/$/;"	m	struct:chr18deletions
lsSnpPdb	hg/inc/lsSnpPdb.h	/^struct lsSnpPdb$/;"	s
lsSnpPdbChimeraGenericLink	hg/lib/lsSnpPdbChimera.c	/^void lsSnpPdbChimeraGenericLink(char *pdbSpec, char *script,$/;"	f
lsSnpPdbChimeraGetSnpPdbs	hg/lib/lsSnpPdbChimera.c	/^struct slName *lsSnpPdbChimeraGetSnpPdbs(struct sqlConnection *conn,$/;"	f
lsSnpPdbChimeraGetStructType	hg/lib/lsSnpPdbChimera.c	/^char *lsSnpPdbChimeraGetStructType(struct sqlConnection *conn, char *pdbId)$/;"	f
lsSnpPdbChimeraSnpAnn	hg/lib/lsSnpPdbChimera.c	/^void lsSnpPdbChimeraSnpAnn(struct sqlConnection *conn,$/;"	f
lsSnpPdbChimera_h	hg/inc/lsSnpPdbChimera.h	9;"	d
lsSnpPdbCommaIn	hg/lib/lsSnpPdb.c	/^struct lsSnpPdb *lsSnpPdbCommaIn(char **pS, struct lsSnpPdb *ret)$/;"	f
lsSnpPdbCommaOut	hg/inc/lsSnpPdb.h	65;"	d
lsSnpPdbFree	hg/lib/lsSnpPdb.c	/^void lsSnpPdbFree(struct lsSnpPdb **pEl)$/;"	f
lsSnpPdbFreeList	hg/lib/lsSnpPdb.c	/^void lsSnpPdbFreeList(struct lsSnpPdb **pList)$/;"	f
lsSnpPdbGetUrlPdbSnp	hg/lib/lsSnpPdbChimera.c	/^char *lsSnpPdbGetUrlPdbSnp(char *pdbId, char *snpId)$/;"	f
lsSnpPdbHasPdb	hg/lib/lsSnpPdbChimera.c	/^boolean lsSnpPdbHasPdb(struct sqlConnection *conn, char *pdbId)$/;"	f
lsSnpPdbLoad	hg/lib/lsSnpPdb.c	/^struct lsSnpPdb *lsSnpPdbLoad(char **row)$/;"	f
lsSnpPdbLoadAll	hg/lib/lsSnpPdb.c	/^struct lsSnpPdb *lsSnpPdbLoadAll(char *fileName) $/;"	f
lsSnpPdbLoadAllByChar	hg/lib/lsSnpPdb.c	/^struct lsSnpPdb *lsSnpPdbLoadAllByChar(char *fileName, char chopper) $/;"	f
lsSnpPdbLoadAllByTab	hg/inc/lsSnpPdb.h	43;"	d
lsSnpPdbNMR	hg/inc/lsSnpPdb.h	/^    lsSnpPdbNMR = 1,$/;"	e	enum:lsSnpPdbStructType
lsSnpPdbOutput	hg/lib/lsSnpPdb.c	/^void lsSnpPdbOutput(struct lsSnpPdb *el, FILE *f, char sep, char lastSep) $/;"	f
lsSnpPdbStaticLoad	hg/lib/lsSnpPdb.c	/^void lsSnpPdbStaticLoad(char **row, struct lsSnpPdb *ret)$/;"	f
lsSnpPdbStructType	hg/inc/lsSnpPdb.h	/^enum lsSnpPdbStructType$/;"	g
lsSnpPdbTabOut	hg/inc/lsSnpPdb.h	62;"	d
lsSnpPdbXRay	hg/inc/lsSnpPdb.h	/^    lsSnpPdbXRay = 0,$/;"	e	enum:lsSnpPdbStructType
lsdb	hg/inc/gv.h	/^    char *lsdb;	\/* for LSDB name of actual source DB *\/$/;"	m	struct:gvSrc
lumpExonsIntoGenes	jkOwnLib/crudeali.c	/^static int lumpExonsIntoGenes(struct crudeExon *exons, int exonCount, $/;"	f	file:
lumpHits	jkOwnLib/fuzzyFind.c	/^struct protoGene *lumpHits(struct ffAli **pHitList, DNA *ns, DNA *hs)$/;"	f
lumpHitsIntoExons	jkOwnLib/crudeali.c	/^static int lumpHitsIntoExons(struct crudeHit *hits, int hitCount, struct crudeExon *exons)$/;"	f	file:
lumpOneDimension	lib/boxLump.c	/^struct boxClump *lumpOneDimension(struct boxIn *boxList, boolean onQuery)$/;"	f
lumpProtoGenes	jkOwnLib/fuzzyFind.c	/^void lumpProtoGenes(struct protoGene **pList,$/;"	f
mEnd	hg/inc/pseudoGeneLink.h	/^    int mEnd;	\/* mgc alignment end position *\/$/;"	m	struct:pseudoGeneLink
mEnd	hg/inc/retroMrnaInfo.h	/^    int mEnd;	\/* mgc alignment end position col46 *\/$/;"	m	struct:retroMrnaInfo
mEnd	hg/inc/ucscRetroInfo.h	/^    int mEnd;	\/* mgc alignment end position col44 *\/$/;"	m	struct:ucscRetroInfo
mRNA	hg/inc/kgXref.h	/^    char *mRNA;	\/* mRNA ID *\/$/;"	m	struct:kgXref
mStart	hg/inc/pseudoGeneLink.h	/^    int mStart;	\/* mgc alignment start position *\/$/;"	m	struct:pseudoGeneLink
mStart	hg/inc/retroMrnaInfo.h	/^    int mStart;	\/* mgc alignment start position col45 *\/$/;"	m	struct:retroMrnaInfo
mStart	hg/inc/ucscRetroInfo.h	/^    int mStart;	\/* mgc alignment start position col43 *\/$/;"	m	struct:ucscRetroInfo
mWidth	hg/inc/trackLayout.h	/^    int mWidth;			\/* Width of 'M' in font. *\/$/;"	m	struct:trackLayout
ma	hg/inc/geneGraph.h	/^    struct ggMrnaAli *ma;	\/* Associated mrnaInfo. *\/$/;"	m	struct:ggAliInfo	typeref:struct:ggAliInfo::ggMrnaAli
ma	hg/inc/ggMrnaAli.h	/^    struct ggMrnaAli *ma;   \/* Cdna alignment info. *\/$/;"	m	struct:maRef	typeref:struct:maRef::ggMrnaAli
maBedClumpGivenGrouping	hg/lib/microarray.c	/^void maBedClumpGivenGrouping(struct bed *bedList, struct maGrouping *grouping, struct maGrouping *subset, int subsetOffset)$/;"	f
maCalcNewScore	hg/lib/microarray.c	/^static float maCalcNewScore(float *expScores, int *mapRow, enum maCombineMethod method, int minExps)$/;"	f	file:
maCombineCols	hg/lib/microarray.c	/^struct maExpDataMatrix *maCombineCols(struct maExpDataMatrix *origMat, struct mapArray *mapping, enum maCombineMethod method, int minExps)$/;"	f
maCombineGroupingFromCart	hg/lib/microarray.c	/^struct maGrouping *maCombineGroupingFromCart(struct microarrayGroups *groupings, $/;"	f
maCombineMethod	hg/inc/microarray.h	/^enum maCombineMethod$/;"	g
maDoubleMeanHandleNA	hg/lib/microarray.c	/^double maDoubleMeanHandleNA(int count, double *array)$/;"	f
maDoubleMedianHandleNA	hg/lib/microarray.c	/^double maDoubleMedianHandleNA(int count, double *array)$/;"	f
maExpDataAddConstant	hg/lib/microarray.c	/^void maExpDataAddConstant(struct expData *exps, double c)$/;"	f
maExpDataArray	hg/lib/microarray.c	/^float **maExpDataArray(struct expData *exps, int *pNrow, int *pNcol)$/;"	f
maExpDataClipMin	hg/lib/microarray.c	/^void maExpDataClipMin(struct expData *exps, float minGood, float minVal)$/;"	f
maExpDataClumpGivenGrouping	hg/lib/microarray.c	/^struct expData *maExpDataClumpGivenGrouping(struct expData *exps, struct maGrouping *grouping)$/;"	f
maExpDataCombineCols	hg/lib/microarray.c	/^struct expData *maExpDataCombineCols(struct expData *exps, struct mapArray *mapping, enum maCombineMethod method, int minExps)$/;"	f
maExpDataDoLogRatioClumpExpRecord	hg/lib/microarray.c	/^void maExpDataDoLogRatioClumpExpRecord(struct expData *exps, struct expRecord *erList, int extrasIndex, enum maCombineMethod method)$/;"	f
maExpDataDoLogRatioClumping	hg/lib/microarray.c	/^void maExpDataDoLogRatioClumping(struct expData *exps, struct mapArray *mapping, enum maCombineMethod method)$/;"	f
maExpDataDoLogRatioGivenMedSpec	hg/lib/microarray.c	/^void maExpDataDoLogRatioGivenMedSpec(struct expData *exps, struct maMedSpec *specList, enum maCombineMethod method)$/;"	f
maExpDataDoLogRatioMeanOrMedian	hg/lib/microarray.c	/^void maExpDataDoLogRatioMeanOrMedian(struct expData *exps, boolean mean)$/;"	f
maExpDataDoLogRatioTranspose	hg/lib/microarray.c	/^void maExpDataDoLogRatioTranspose(struct expData *exps, boolean mean)$/;"	f
maExpDataFromExpBed	hg/lib/microarray.c	/^struct expData *maExpDataFromExpBed(struct bed *oneBed)$/;"	f
maExpDataGroupByExtras	hg/lib/microarray.c	/^struct expData *maExpDataGroupByExtras(struct expData *exps, struct expRecord *erList, int extrasIndex, enum maCombineMethod method, int minExps)$/;"	f
maExpDataListFromExpBedList	hg/lib/microarray.c	/^struct expData *maExpDataListFromExpBedList(struct bed *bedList)$/;"	f
maExpDataMatrix	hg/lib/microarray.c	/^struct maExpDataMatrix$/;"	s	file:
maExpDataMeanByExtras	hg/lib/microarray.c	/^struct expData *maExpDataMeanByExtras(struct expData *exps, struct expRecord *erList, int extrasIndex, int minExps)$/;"	f
maExpDataMedianByExtras	hg/lib/microarray.c	/^struct expData *maExpDataMedianByExtras(struct expData *exps, struct expRecord *erList, int extrasIndex, int minExps)$/;"	f
maExpDataMedianFromSpec	hg/lib/microarray.c	/^struct expData *maExpDataMedianFromSpec(struct expData *exps, struct maMedSpec *specs, int minExps)$/;"	f
maExpDataNumBadScoresForOneArray	hg/lib/microarray.c	/^int maExpDataNumBadScoresForOneArray(struct expData *exps, struct expRecord *ers, char *arrayName)$/;"	f
maExpDataNumBadScoresForProbe	hg/lib/microarray.c	/^int maExpDataNumBadScoresForProbe(struct expData *exps, char *probeName)$/;"	f
maExpDataOverallMean	hg/lib/microarray.c	/^float maExpDataOverallMean(struct expData *exps)$/;"	f
maExpDataOverallMedian	hg/lib/microarray.c	/^float maExpDataOverallMedian(struct expData *exps)$/;"	f
maExpDataTranspose	hg/lib/microarray.c	/^struct expData *maExpDataTranspose(struct expData *exps)$/;"	f
maExpDataUntranspose	hg/lib/microarray.c	/^void maExpDataUntranspose(struct expData *exps, struct expData *transpose)$/;"	f
maGetGrouping	hg/lib/microarray.c	/^struct maGrouping *maGetGrouping(struct microarrayGroups *groupings, char *name)$/;"	f
maGetGroupingFromCt	hg/lib/microarray.c	/^struct maGrouping *maGetGroupingFromCt(struct customTrack *ct)$/;"	f
maGetGroupingsFromList	hg/lib/microarray.c	/^struct maGrouping *maGetGroupingsFromList(char *commaList, struct hash *allGroupings)$/;"	f
maGetTrackGroupings	hg/lib/microarray.c	/^struct microarrayGroups *maGetTrackGroupings(char *database, struct trackDb *tdb)$/;"	f
maGrouping	hg/inc/microarray.h	/^struct maGrouping$/;"	s
maGroupingFree	hg/lib/microarray.c	/^void maGroupingFree(struct maGrouping **pMag)$/;"	f
maGroupingFreeList	hg/lib/microarray.c	/^void maGroupingFreeList(struct maGrouping **pList)$/;"	f
maHashToMaGrouping	hg/lib/microarray.c	/^struct maGrouping *maHashToMaGrouping(struct hash *oneGroup)$/;"	f
maList	hg/inc/ggMrnaAli.h	/^    struct ggMrnaAli *maList;     \/* List of alignments. *\/$/;"	m	struct:ggMrnaInput	typeref:struct:ggMrnaInput::ggMrnaAli
maMappingFromGrouping	hg/lib/microarray.c	/^struct mapArray *maMappingFromGrouping(struct maGrouping *grouping)$/;"	f
maMedSpec	hg/inc/microarray.h	/^struct maMedSpec$/;"	s
maMedSpecReadAll	hg/lib/microarray.c	/^struct maMedSpec *maMedSpecReadAll(char *fileName)$/;"	f
maPruneGroupingWithSubset	hg/lib/microarray.c	/^static void maPruneGroupingWithSubset(struct maGrouping *grouping, struct maGrouping *subset, int subsetOffset)$/;"	f	file:
maPruneLoL	hg/lib/microarray.c	/^static void maPruneLoL(struct slRef *lol, struct slInt *subsetList)$/;"	f	file:
maRef	hg/inc/ggMrnaAli.h	/^struct maRef $/;"	s
maRefFree	hg/lib/ggCluster.c	/^void maRefFree(struct maRef **pMaRef)$/;"	f
maRefFreeList	hg/lib/ggCluster.c	/^void maRefFreeList(struct maRef **pMaRef)$/;"	f
maSubsetGroupingFromCart	hg/lib/microarray.c	/^struct maGrouping *maSubsetGroupingFromCart(struct microarrayGroups *groupings, $/;"	f
maSubsetOffsetFromCart	hg/lib/microarray.c	/^int maSubsetOffsetFromCart(struct maGrouping *subset, struct cart* cart, char *trackName)$/;"	f
macaqueAllele	hg/inc/hapmapAllelesSummary.h	/^    char *macaqueAllele;	\/* macaque allele *\/$/;"	m	struct:hapmapAllelesSummary
macaqueAlleleQuality	hg/inc/hapmapAllelesSummary.h	/^    unsigned macaqueAlleleQuality;	\/* quality score (0-100) *\/$/;"	m	struct:hapmapAllelesSummary
machineSpeed	lib/portimpl.c	/^double machineSpeed()$/;"	f
mafAli	inc/maf.h	/^struct mafAli$/;"	s
mafAliClone	lib/maf.c	/^struct mafAli *mafAliClone(struct mafAli *srcAli)$/;"	f
mafAliFree	lib/maf.c	/^void mafAliFree(struct mafAli **pObj)$/;"	f
mafAliFreeList	lib/maf.c	/^void mafAliFreeList(struct mafAli **pList)$/;"	f
mafCheckFirstComponentSrc	hg/lib/hgMaf.c	/^static void mafCheckFirstComponentSrc(struct mafAli *mafList, char *src)$/;"	f	file:
mafCheckFirstComponentStrand	hg/lib/hgMaf.c	/^static void mafCheckFirstComponentStrand(struct mafAli *mafList, char strand)$/;"	f	file:
mafCmp	hg/lib/hgMaf.c	/^int mafCmp(const void *va, const void *vb)$/;"	f
mafColMinMaxScore	lib/mafScore.c	/^void mafColMinMaxScore(struct mafAli *maf, $/;"	f
mafColumnEmpty	lib/maf.c	/^boolean mafColumnEmpty(struct mafAli *maf, int col)$/;"	f
mafComp	inc/maf.h	/^struct mafComp$/;"	s
mafCompClone	lib/maf.c	/^struct mafComp *mafCompClone(struct mafComp *srcComp)$/;"	f
mafCompFree	lib/maf.c	/^void mafCompFree(struct mafComp **pObj)$/;"	f
mafCompFreeList	lib/maf.c	/^void mafCompFreeList(struct mafComp **pList)$/;"	f
mafCompGetSrcDb	lib/maf.c	/^char *mafCompGetSrcDb(struct mafComp *mc, char *buf, int bufSize)$/;"	f
mafCompGetSrcName	lib/maf.c	/^char *mafCompGetSrcName(struct mafComp *mc)$/;"	f
mafFactory	hg/lib/customFactory.c	/^static struct customFactory mafFactory =$/;"	v	typeref:struct:customFactory	file:
mafFile	inc/maf.h	/^struct mafFile$/;"	s
mafFileFree	lib/maf.c	/^void mafFileFree(struct mafFile **pObj)$/;"	f
mafFileFreeList	lib/maf.c	/^void mafFileFreeList(struct mafFile **pList)$/;"	f
mafFindCompPrefix	lib/maf.c	/^struct mafComp *mafFindCompPrefix(struct mafAli *maf, char *pre, char *sep)$/;"	f
mafFindCompSpecies	lib/maf.c	/^struct mafComp *mafFindCompSpecies(struct mafAli *maf, char *species, char sepChar)$/;"	f
mafFindComponent	lib/maf.c	/^struct mafComp *mafFindComponent(struct mafAli *maf, char *src)$/;"	f
mafFlipStrand	lib/maf.c	/^void mafFlipStrand(struct mafAli *maf)$/;"	f
mafFrames	hg/inc/mafFrames.h	/^struct mafFrames$/;"	s
mafFramesCommaIn	hg/lib/mafFrames.c	/^struct mafFrames *mafFramesCommaIn(char **pS, struct mafFrames *ret)$/;"	f
mafFramesCommaOut	hg/inc/mafFrames.h	73;"	d
mafFramesFree	hg/lib/mafFrames.c	/^void mafFramesFree(struct mafFrames **pEl)$/;"	f
mafFramesFreeList	hg/lib/mafFrames.c	/^void mafFramesFreeList(struct mafFrames **pList)$/;"	f
mafFramesGetSql	hg/lib/mafFrames.c	/^char *mafFramesGetSql(char *table, unsigned options, int chromIdxLen)$/;"	f
mafFramesLoad	hg/lib/mafFrames.c	/^struct mafFrames *mafFramesLoad(char **row)$/;"	f
mafFramesLoadAll	hg/lib/mafFrames.c	/^struct mafFrames *mafFramesLoadAll(char *fileName) $/;"	f
mafFramesLoadAllByChar	hg/lib/mafFrames.c	/^struct mafFrames *mafFramesLoadAllByChar(char *fileName, char chopper) $/;"	f
mafFramesLoadAllByTab	hg/inc/mafFrames.h	51;"	d
mafFramesLoadOld	hg/lib/mafFrames.c	/^struct mafFrames *mafFramesLoadOld(char **row)$/;"	f
mafFramesOutput	hg/lib/mafFrames.c	/^void mafFramesOutput(struct mafFrames *el, FILE *f, char sep, char lastSep) $/;"	f
mafFramesStaticLoad	hg/lib/mafFrames.c	/^void mafFramesStaticLoad(char **row, struct mafFrames *ret)$/;"	f
mafFramesStaticLoadOld	hg/lib/mafFrames.c	/^void mafFramesStaticLoadOld(char **row, struct mafFrames *ret)$/;"	f
mafFramesTabOut	hg/inc/mafFrames.h	70;"	d
mafFromAxt	lib/mafFromAxt.c	/^struct mafAli *mafFromAxt(struct axt *axt, int tSize, $/;"	f
mafFromAxtTemp	lib/mafFromAxt.c	/^void mafFromAxtTemp(struct axt *axt, int tSize, int qSize,$/;"	f
mafGeneOutPred	hg/lib/mafGene.c	/^void mafGeneOutPred(FILE *f, struct genePred *pred, char *dbName, $/;"	f
mafHead	jkOwnLib/gfOut.c	/^static void mafHead(struct gfOutput *out, FILE *f)$/;"	f	file:
mafLoadInRegion	hg/lib/hgMaf.c	/^struct mafAli *mafLoadInRegion(struct sqlConnection *conn, char *table,$/;"	f
mafLoadInRegion2	hg/lib/hgMaf.c	/^struct mafAli *mafLoadInRegion2(struct sqlConnection *conn,$/;"	f
mafLoader	hg/lib/customFactory.c	/^static struct customTrack *mafLoader(struct customFactory *fac,$/;"	f	file:
mafLoaderBuildTab	hg/lib/customFactory.c	/^static void mafLoaderBuildTab(struct customTrack *track, char *mafFile)$/;"	f	file:
mafMayFindAllComponents	lib/maf.c	/^boolean mafMayFindAllComponents(struct mafAli *maf, struct hash *cHash) $/;"	f
mafMayFindCompPrefix	lib/maf.c	/^struct mafComp *mafMayFindCompPrefix(struct mafAli *maf, char *pre, char *sep)$/;"	f
mafMayFindCompSpecies	lib/maf.c	/^struct mafComp *mafMayFindCompSpecies(struct mafAli *maf, char *species, char sepChar)$/;"	f
mafMayFindComponent	lib/maf.c	/^struct mafComp *mafMayFindComponent(struct mafAli *maf, char *src)$/;"	f
mafMayFindComponentDb	lib/maf.c	/^struct mafComp *mafMayFindComponentDb(struct mafAli *maf, char *db)$/;"	f
mafMayFindComponentInHash	lib/maf.c	/^struct mafComp *mafMayFindComponentInHash(struct mafAli *maf, struct hash *cHash) $/;"	f
mafMayFindSpeciesInHash	lib/maf.c	/^struct mafComp *mafMayFindSpeciesInHash(struct mafAli *maf, struct hash *cHash, char sepChar) $/;"	f
mafMayOpen	lib/maf.c	/^struct mafFile *mafMayOpen(char *fileName)$/;"	f
mafMoveComponentToTop	lib/maf.c	/^void mafMoveComponentToTop(struct mafAli *maf, char *componentSource)$/;"	f
mafNeedSubset	lib/maf.c	/^boolean mafNeedSubset(struct mafAli *maf, char *componentSource,$/;"	f
mafNext	lib/maf.c	/^struct mafAli *mafNext(struct mafFile *mf)$/;"	f
mafNextWithPos	lib/maf.c	/^struct mafAli *mafNextWithPos(struct mafFile *mf, off_t *retOffset)$/;"	f
mafOpen	lib/maf.c	/^struct mafFile *mafOpen(char *fileName)$/;"	f
mafPlusStart	lib/maf.c	/^int mafPlusStart(struct mafComp *comp)$/;"	f
mafQueryOut	jkOwnLib/gfOut.c	/^static void mafQueryOut(struct gfOutput *out, FILE *f)$/;"	f	file:
mafReadAll	lib/maf.c	/^struct mafFile *mafReadAll(char *fileName)$/;"	f
mafRecognizer	hg/lib/customFactory.c	/^static boolean mafRecognizer(struct customFactory *fac,$/;"	f	file:
mafRegDef	inc/maf.h	/^struct mafRegDef$/;"	s
mafRegDefClone	lib/maf.c	/^static struct mafRegDef *mafRegDefClone(struct mafRegDef *srcRegDef)$/;"	f	file:
mafRegDefFree	lib/maf.c	/^void mafRegDefFree(struct mafRegDef **mrdPtr)$/;"	f
mafRegDefNew	lib/maf.c	/^struct mafRegDef *mafRegDefNew(char *type, int size, char *id)$/;"	f
mafRegDefParse	lib/maf.c	/^static void mafRegDefParse(struct mafFile *mf, struct mafAli *ali, char *line)$/;"	f	file:
mafRegDefTxUpstream	lib/maf.c	/^char *mafRegDefTxUpstream = "txupstream";  \/\/ transcription start size upstream region$/;"	v
mafRewind	lib/maf.c	/^void mafRewind(struct mafFile *mf)$/;"	f
mafScoreMultiz	lib/mafScore.c	/^double mafScoreMultiz(struct mafAli *maf)$/;"	f
mafScoreMultizMaxCol	lib/mafScore.c	/^double mafScoreMultizMaxCol(int species)$/;"	f
mafScoreRangeMultiz	lib/mafScore.c	/^double mafScoreRangeMultiz(struct mafAli *maf, int start, int size)$/;"	f
mafSrcDb	lib/maf.c	/^void mafSrcDb(char *name, char *retDb, int retDbSize)$/;"	f
mafStripEmptyColumns	lib/maf.c	/^void mafStripEmptyColumns(struct mafAli *maf)$/;"	f
mafSubset	lib/maf.c	/^struct mafAli *mafSubset(struct mafAli *maf, char *componentSource,$/;"	f
mafSubsetE	lib/maf.c	/^struct mafAli *mafSubsetE(struct mafAli *maf, char *componentSource,$/;"	f
mafSummary	hg/inc/mafSummary.h	/^struct mafSummary$/;"	s
mafSummaryCommaIn	hg/lib/mafSummary.c	/^struct mafSummary *mafSummaryCommaIn(char **pS, struct mafSummary *ret)$/;"	f
mafSummaryCommaOut	hg/inc/mafSummary.h	90;"	d
mafSummaryFree	hg/lib/mafSummary.c	/^void mafSummaryFree(struct mafSummary **pEl)$/;"	f
mafSummaryFreeList	hg/lib/mafSummary.c	/^void mafSummaryFreeList(struct mafSummary **pList)$/;"	f
mafSummaryLoad	hg/lib/mafSummary.c	/^struct mafSummary *mafSummaryLoad(char **row)$/;"	f
mafSummaryLoadAll	hg/lib/mafSummary.c	/^struct mafSummary *mafSummaryLoadAll(char *fileName) $/;"	f
mafSummaryLoadAllByChar	hg/lib/mafSummary.c	/^struct mafSummary *mafSummaryLoadAllByChar(char *fileName, char chopper) $/;"	f
mafSummaryLoadAllByTab	hg/inc/mafSummary.h	43;"	d
mafSummaryLoadByQuery	hg/lib/mafSummary.c	/^struct mafSummary *mafSummaryLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
mafSummaryMiniLoad	hg/lib/mafSummary.c	/^struct mafSummary *mafSummaryMiniLoad(char **row)$/;"	f
mafSummaryOutput	hg/lib/mafSummary.c	/^void mafSummaryOutput(struct mafSummary *el, FILE *f, char sep, char lastSep) $/;"	f
mafSummarySaveToDb	hg/lib/mafSummary.c	/^void mafSummarySaveToDb(struct sqlConnection *conn, struct mafSummary *el, char *tableName, int updateSize)$/;"	f
mafSummarySaveToDbEscaped	hg/lib/mafSummary.c	/^void mafSummarySaveToDbEscaped(struct sqlConnection *conn, struct mafSummary *el, char *tableName, int updateSize)$/;"	f
mafSummaryStaticLoad	hg/lib/mafSummary.c	/^void mafSummaryStaticLoad(char **row, struct mafSummary *ret)$/;"	f
mafSummaryTabOut	hg/inc/mafSummary.h	87;"	d
mafSummaryTableCreate	hg/lib/mafSummary.c	/^void mafSummaryTableCreate(struct sqlConnection *conn, char *tableName, int indexSize)$/;"	f
mafWrite	lib/maf.c	/^void mafWrite(FILE *f, struct mafAli *ali)$/;"	f
mafWriteAll	lib/maf.c	/^void mafWriteAll(struct mafFile *mf, char *fileName)$/;"	f
mafWriteEnd	lib/maf.c	/^void mafWriteEnd(FILE *f)$/;"	f
mafWriteStart	lib/maf.c	/^void mafWriteStart(FILE *f, char *scoring)$/;"	f
magic	inc/itsa.h	/^    bits32 magic;	 \/* Always ITSA_MAGIC *\/$/;"	m	struct:itsaFileHeader
magic	inc/splix.h	/^    bits32 magic;	\/* Always SPLIX_MAGIC *\/$/;"	m	struct:splixFileHeader
magic	inc/sufa.h	/^    bits32 magic;	\/* Always SUFA_MAGIC *\/$/;"	m	struct:sufaFileHeader
magic	inc/sufx.h	/^    bits32 magic;	 \/* Always SUFX_MAGIC *\/$/;"	m	struct:sufxFileHeader
main	lib/md5.c	/^int main( void )$/;"	f
majAllele	hg/inc/alleleFreqs.h	/^    char majAllele;	\/*  major_allele		G *\/$/;"	m	struct:alleleFreqs
majCount	hg/inc/alleleFreqs.h	/^    int majCount;	\/*  major_allele_count	120 *\/$/;"	m	struct:alleleFreqs
majCount	hg/inc/genotypeFreqs.h	/^    int majCount;	\/* majorhom-count	60 *\/$/;"	m	struct:genotypeFreqs
majFreq	hg/inc/alleleFreqs.h	/^    float majFreq;	\/*  major_allele_freq	1 *\/$/;"	m	struct:alleleFreqs
majFreq	hg/inc/genotypeFreqs.h	/^    float majFreq;	\/* majorhom-freq	1 *\/$/;"	m	struct:genotypeFreqs
majGt	hg/inc/genotypeFreqs.h	/^    char *majGt;	\/* majorhom-gt	G\/G *\/$/;"	m	struct:genotypeFreqs
majorAlleleCEU	hg/inc/hapmapAllelesSummary.h	/^    char *majorAlleleCEU;	\/* major allele for the CEU population *\/$/;"	m	struct:hapmapAllelesSummary
majorAlleleCHB	hg/inc/hapmapAllelesSummary.h	/^    char *majorAlleleCHB;	\/* major allele for the CHB population *\/$/;"	m	struct:hapmapAllelesSummary
majorAlleleCountCEU	hg/inc/hapmapAllelesSummary.h	/^    unsigned majorAlleleCountCEU;	\/* major allele count for the CEU population *\/$/;"	m	struct:hapmapAllelesSummary
majorAlleleCountCHB	hg/inc/hapmapAllelesSummary.h	/^    unsigned majorAlleleCountCHB;	\/* major allele count for the CHB population *\/$/;"	m	struct:hapmapAllelesSummary
majorAlleleCountJPT	hg/inc/hapmapAllelesSummary.h	/^    unsigned majorAlleleCountJPT;	\/* major allele count for the JPT population *\/$/;"	m	struct:hapmapAllelesSummary
majorAlleleCountYRI	hg/inc/hapmapAllelesSummary.h	/^    unsigned majorAlleleCountYRI;	\/* major allele count for the YRI population *\/$/;"	m	struct:hapmapAllelesSummary
majorAlleleJPT	hg/inc/hapmapAllelesSummary.h	/^    char *majorAlleleJPT;	\/* major allele for the JPT population *\/$/;"	m	struct:hapmapAllelesSummary
majorAlleleYRI	hg/inc/hapmapAllelesSummary.h	/^    char *majorAlleleYRI;	\/* major allele for the YRI population *\/$/;"	m	struct:hapmapAllelesSummary
majorVersion	inc/itsa.h	/^    bits16 majorVersion; \/* This version changes when backward compatibility breaks. *\/$/;"	m	struct:itsaFileHeader
majorVersion	inc/splix.h	/^    bits16 majorVersion; \/* This version changes when backward compatibility breaks. *\/$/;"	m	struct:splixFileHeader
majorVersion	inc/sufa.h	/^    bits16 majorVersion; \/* This version changes when backward compatibility breaks. *\/$/;"	m	struct:sufaFileHeader
majorVersion	inc/sufx.h	/^    bits16 majorVersion; \/* This version changes when backward compatibility breaks. *\/$/;"	m	struct:sufxFileHeader
majorVersion	inc/vcf.h	/^    int majorVersion;		\/\/ 4 etc.$/;"	m	struct:vcfFile
makeAddClearButtonPair	hg/lib/hui.c	/^static void makeAddClearButtonPair(char *class,char *seperator)$/;"	f	file:
makeAddClearSubmitTweak	hg/lib/hui.c	/^static void makeAddClearSubmitTweak(char javascript[JBUFSIZE], char *formName,$/;"	f	file:
makeChromFileName	lib/wormdna.c	/^static void makeChromFileName(char *chromId, char *buf)$/;"	f	file:
makeCmds	hg/lib/hgFind.c	/^static void makeCmds(char **cmds[HGFIND_MAX_KEYWORDS+1],$/;"	f	file:
makeDashes	hg/lib/variant.c	/^static char *makeDashes(int count)$/;"	f	file:
makeDbTableToTrackHash	hg/lib/hdb.c	/^static struct hash *makeDbTableToTrackHash(char *db)$/;"	f	file:
makeDir	lib/osunix.c	/^boolean makeDir(char *dirName)$/;"	f
makeDirs	lib/common.c	/^void makeDirs(char* path)$/;"	f
makeDirsOnPath	lib/portimpl.c	/^void makeDirsOnPath(char *pathName)$/;"	f
makeDownloadsLink	hg/lib/hui.c	/^boolean makeDownloadsLink(char *database, struct trackDb *tdb)$/;"	f
makeEscapedString	lib/obscure.c	/^char *makeEscapedString(char *in, char toEscape)$/;"	f
makeFastProber	jkOwnLib/crudeali.c	/^static struct fastProber *makeFastProber(DNA *probeDna, int probeSize)$/;"	f	file:
makeFreqTable	jkOwnLib/fuzzyFind.c	/^static void makeFreqTable(DNA *dna, int dnaSize, double freq[4])$/;"	f	file:
makeGbTrackTableName	hg/lib/hgFind.c	/^static void makeGbTrackTableName(char *db, char *tableName, size_t tnSize, char *base)$/;"	f	file:
makeGoodTile	jkOwnLib/crudeali.c	/^static boolean makeGoodTile(DNA *dna, bits32 *retTile16, bits16 *retTile8, int tileSize)$/;"	f	file:
makeHits	jkOwnLib/crudeali.c	/^static int makeHits(struct fastProber *fp, struct nt4Seq *target, struct crudeHit *hits,$/;"	f	file:
makeHits16	jkOwnLib/crudeali.c	/^static int makeHits16(struct fastProber *fp, struct nt4Seq *target, struct crudeHit *hits,$/;"	f	file:
makeHits8	jkOwnLib/crudeali.c	/^static int makeHits8(struct fastProber *fp, struct nt4Seq *target, struct crudeHit *hits,$/;"	f	file:
makeIndentBuf	hg/lib/jsHelper.c	/^static char *makeIndentBuf(int indentLevel)$/;"	f	file:
makeIndex	lib/snofmake.c	/^static void makeIndex(FILE *in, FILE *out, $/;"	f	file:
makeIndividualHits16	jkOwnLib/crudeali.c	/^static int makeIndividualHits16(struct probeTile **hash, bits32 *bases, int baseOffset, int baseWordCount,$/;"	f	file:
makeInitialGraph	hg/lib/ggGraph.c	/^static struct geneGraph *makeInitialGraph(struct ggMrnaCluster *mc, struct ggMrnaInput *ci)$/;"	f	file:
makeIsoformBaseName	lib/wormdna.c	/^static void makeIsoformBaseName(char *name)$/;"	f	file:
makeItBed12	lib/basicBed.c	/^void makeItBed12(struct bed *bedList, int numFields)$/;"	f
makeItemsFactory	hg/lib/customFactory.c	/^static struct customFactory makeItemsFactory =$/;"	v	typeref:struct:customFactory	file:
makeItemsItem	hg/inc/makeItemsItem.h	/^struct makeItemsItem$/;"	s
makeItemsItemAsObj	hg/lib/makeItemsItem.c	/^struct asObject *makeItemsItemAsObj()$/;"	f
makeItemsItemAutoSqlString	hg/lib/makeItemsItem.c	/^static char *makeItemsItemAutoSqlString =$/;"	v	file:
makeItemsItemCommaIn	hg/lib/makeItemsItem.c	/^struct makeItemsItem *makeItemsItemCommaIn(char **pS, struct makeItemsItem *ret)$/;"	f
makeItemsItemCommaOut	hg/inc/makeItemsItem.h	93;"	d
makeItemsItemFree	hg/lib/makeItemsItem.c	/^void makeItemsItemFree(struct makeItemsItem **pEl)$/;"	f
makeItemsItemFreeList	hg/lib/makeItemsItem.c	/^void makeItemsItemFreeList(struct makeItemsItem **pList)$/;"	f
makeItemsItemFromRow	hg/lib/customFactory.c	/^struct makeItemsItem *makeItemsItemFromRow(char **row, int rowSize)$/;"	f
makeItemsItemLoad	hg/lib/makeItemsItem.c	/^struct makeItemsItem *makeItemsItemLoad(char **row)$/;"	f
makeItemsItemLoadAll	hg/lib/makeItemsItem.c	/^struct makeItemsItem *makeItemsItemLoadAll(char *fileName)$/;"	f
makeItemsItemLoadAllByChar	hg/lib/makeItemsItem.c	/^struct makeItemsItem *makeItemsItemLoadAllByChar(char *fileName, char chopper)$/;"	f
makeItemsItemLoadAllByTab	hg/inc/makeItemsItem.h	71;"	d
makeItemsItemLoadByQuery	hg/lib/makeItemsItem.c	/^struct makeItemsItem *makeItemsItemLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
makeItemsItemOutput	hg/lib/makeItemsItem.c	/^void makeItemsItemOutput(struct makeItemsItem *el, FILE *f, char sep, char lastSep)$/;"	f
makeItemsItemSaveToDb	hg/lib/makeItemsItem.c	/^void makeItemsItemSaveToDb(struct sqlConnection *conn, struct makeItemsItem *el, char *tableName, int updateSize)$/;"	f
makeItemsItemSaveToDbEscaped	hg/lib/makeItemsItem.c	/^void makeItemsItemSaveToDbEscaped(struct sqlConnection *conn, struct makeItemsItem *el, char *tableName, int updateSize)$/;"	f
makeItemsItemStaticLoad	hg/lib/makeItemsItem.c	/^void makeItemsItemStaticLoad(char **row, struct makeItemsItem *ret)$/;"	f
makeItemsItemTabOut	hg/inc/makeItemsItem.h	90;"	d
makeItemsLoader	hg/lib/customFactory.c	/^static struct customTrack *makeItemsLoader(struct customFactory *fac, struct hash *chromHash,$/;"	f	file:
makeItemsRecognizer	hg/lib/customFactory.c	/^static boolean makeItemsRecognizer(struct customFactory *fac,	struct customPp *cpp, char *type,$/;"	f	file:
makeMatchTable	jkOwnLib/xensmall.c	/^static void makeMatchTable(int matchTable[], double matchProb, double gcRatio)$/;"	f	file:
makeMatrix	hg/lib/microarray.c	/^struct maExpDataMatrix *makeMatrix(struct expData *exps)$/;"	f
makeNamedDownloadsLink	hg/lib/hui.c	/^static boolean makeNamedDownloadsLink(char *database, struct trackDb *tdb,char *name)$/;"	f	file:
makeNotHash	hg/lib/joiner.c	/^static struct hash *makeNotHash(struct slName *list)$/;"	f	file:
makeOffsetList	lib/snofmake.c	/^static struct offsetList *makeOffsetList(FILE *inFile, $/;"	f	file:
makePatSpace	jkOwnLib/patSpace.c	/^struct patSpace *makePatSpace($/;"	f
makeQuotedString	lib/obscure.c	/^char *makeQuotedString(char *in, char quoteChar)$/;"	f
makeSchemaLink	hg/lib/hui.c	/^boolean makeSchemaLink(char *db,struct trackDb *tdb,char *label)$/;"	f
makeSnofName	lib/snof.c	/^static boolean makeSnofName(char *snofName, char *rootName)$/;"	f	file:
makeSortedWraps	lib/hacTree.c	/^static struct sortWrapper *makeSortedWraps(struct hacTree *leafNodes, int itemCount,$/;"	f	file:
makeSubsetSlInt	hg/lib/microarray.c	/^static struct slInt *makeSubsetSlInt(struct maGrouping *subset, int subsetOffset)$/;"	f	file:
makeTempFile	hg/lib/baseMaskCommon.c	/^static void makeTempFile(char *file)$/;"	f	file:
makeTempName	lib/portimpl.c	/^void makeTempName(struct tempName *tn, char *base, char *suffix)$/;"	f
makeTempName	lib/portimpl.h	/^    void (*makeTempName)(struct tempName *tn, char *base, char *suffix);$/;"	m	struct:webServerSpecific
makeTileHash	jkOwnLib/crudeali.c	/^static struct probeTile **makeTileHash()$/;"	f	file:
makeTopLink	hg/lib/hui.c	/^void makeTopLink(struct trackDb *tdb)$/;"	f
makeTrackHash	hg/inc/hui.h	878;"	d
makeTrackHashWithComposites	hg/inc/hui.h	877;"	d
makeTrackSettingsHash	hg/lib/hdb.c	/^static struct hash *makeTrackSettingsHash(char *db)$/;"	f	file:
makeUniqueDefaultTrack	hg/lib/customTrack.c	/^static void makeUniqueDefaultTrack(struct customTrack *ct)$/;"	f	file:
makeWobbleMatchTable	jkOwnLib/xensmall.c	/^static void makeWobbleMatchTable(int matchTable[], double gcRatio)$/;"	f	file:
mammalPsg	hg/inc/mammalPsg.h	/^struct mammalPsg$/;"	s
mammalPsgCommaIn	hg/lib/mammalPsg.c	/^struct mammalPsg *mammalPsgCommaIn(char **pS, struct mammalPsg *ret)$/;"	f
mammalPsgCommaOut	hg/inc/mammalPsg.h	84;"	d
mammalPsgFree	hg/lib/mammalPsg.c	/^void mammalPsgFree(struct mammalPsg **pEl)$/;"	f
mammalPsgFreeList	hg/lib/mammalPsg.c	/^void mammalPsgFreeList(struct mammalPsg **pList)$/;"	f
mammalPsgLoad	hg/lib/mammalPsg.c	/^struct mammalPsg *mammalPsgLoad(char **row)$/;"	f
mammalPsgLoadAll	hg/lib/mammalPsg.c	/^struct mammalPsg *mammalPsgLoadAll(char *fileName) $/;"	f
mammalPsgLoadAllByChar	hg/lib/mammalPsg.c	/^struct mammalPsg *mammalPsgLoadAllByChar(char *fileName, char chopper) $/;"	f
mammalPsgLoadAllByTab	hg/inc/mammalPsg.h	62;"	d
mammalPsgOutput	hg/lib/mammalPsg.c	/^void mammalPsgOutput(struct mammalPsg *el, FILE *f, char sep, char lastSep) $/;"	f
mammalPsgTabOut	hg/inc/mammalPsg.h	81;"	d
mapArray	hg/lib/microarray.c	/^struct mapArray $/;"	s	file:
mapBlock	lib/pslTransMap.c	/^static boolean mapBlock(struct psl *inPsl, struct psl *mapPsl, int *iMapBlkPtr,$/;"	f	file:
mapCdsToGenome	hg/lib/genePred.c	/^static void mapCdsToGenome(struct psl *psl, struct genbankCds* cds,$/;"	f	file:
mapName	hg/inc/trackTable.h	/^    char *mapName;	\/* Symbolic ID of Track *\/$/;"	m	struct:trackTable
mapQ	hg/inc/samAlignment.h	/^    unsigned char mapQ;	\/* Mapping quality 0-255, 255 is best *\/$/;"	m	struct:samAlignment
mapSite	hg/inc/rhMapInfo.h	/^    char *mapSite;	\/* Institution that mapped the marker *\/$/;"	m	struct:rhMapInfo
mapSite	hg/inc/rhMapZfishInfo.h	/^    char *mapSite;	\/* Institution that mapped the marker *\/$/;"	m	struct:rhMapZfishInfo
mapSts	hg/inc/mapSts.h	/^struct mapSts$/;"	s
mapStsCommaIn	hg/lib/mapSts.c	/^struct mapSts *mapStsCommaIn(char **pS, struct mapSts *ret)$/;"	f
mapStsCommaOut	hg/inc/mapSts.h	50;"	d
mapStsFree	hg/lib/mapSts.c	/^void mapStsFree(struct mapSts **pEl)$/;"	f
mapStsFreeList	hg/lib/mapSts.c	/^void mapStsFreeList(struct mapSts **pList)$/;"	f
mapStsLoad	hg/lib/mapSts.c	/^struct mapSts *mapStsLoad(char **row)$/;"	f
mapStsOutput	hg/lib/mapSts.c	/^void mapStsOutput(struct mapSts *el, FILE *f, char sep, char lastSep) $/;"	f
mapStsStaticLoad	hg/lib/mapSts.c	/^void mapStsStaticLoad(char **row, struct mapSts *ret)$/;"	f
mapStsTabOut	hg/inc/mapSts.h	47;"	d
mapThroughChain	hg/lib/liftOver.c	/^static boolean mapThroughChain(struct chain *chain, double minRatio, $/;"	f	file:
mappedChrom	hg/inc/txEdgeOrtho.h	/^    char *mappedChrom;	\/* Chromosome in other organism *\/$/;"	m	struct:txEdgeOrtho
mappedEnd	hg/inc/txEdgeOrtho.h	/^    int mappedEnd;	\/* ChromEnd mapped to other organism *\/$/;"	m	struct:txEdgeOrtho
mappedId	hg/inc/transMapInfo.h	/^    char *mappedId;	\/* id of mapped alignment *\/$/;"	m	struct:transMapInfo
mappedStart	hg/inc/txEdgeOrtho.h	/^    int mappedStart;	\/* ChromStart mapped to other organism *\/$/;"	m	struct:txEdgeOrtho
mappingFromExpRecords	hg/lib/microarray.c	/^struct mapArray *mappingFromExpRecords(struct expRecord *erList, int extrasIndex)$/;"	f
mappingFromMedSpec	hg/lib/microarray.c	/^struct mapArray *mappingFromMedSpec(struct maMedSpec *specList)$/;"	f
mappingId	hg/inc/transMapInfo.h	/^    char *mappingId;	\/* id of chain used for mapping *\/$/;"	m	struct:transMapInfo
margin	hg/inc/genoLay.h	/^    int margin;				\/* Blank area around sides *\/$/;"	m	struct:genoLay
mark	inc/phyloTree.h	/^    struct phyloTree *mark;		\/* probably the favorite child *\/$/;"	m	struct:phyloTree	typeref:struct:phyloTree::phyloTree
mark0	inc/codebias.h	/^    int mark0[64];$/;"	m	struct:codonBias
mark1	inc/codebias.h	/^    int mark1[64][64];$/;"	m	struct:codonBias
markCompensatoryMutations	lib/rnautil.c	/^void markCompensatoryMutations(char *s, char *ref, int *pairList, int *markList)$/;"	f
markContainers	hg/lib/trackHub.c	/^static void markContainers( struct trackHub *hub, $/;"	f	file:
marker	hg/inc/chromGraph.h	/^    char *marker;	\/* Marker *\/$/;"	m	struct:chromGraph
marker	hg/inc/jaxQTL.h	/^    char *marker;	\/* MIT SSLP Marker w\/highest correlation *\/$/;"	m	struct:jaxQTL
marker	hg/inc/jaxQTL2.h	/^    char *marker;	\/* MIT SSLP Marker w\/highest correlation *\/$/;"	m	struct:jaxQTL2
marker	hg/inc/jaxQTL3.h	/^    char *marker;	\/* MIT SSLP Marker w\/highest correlation *\/$/;"	m	struct:jaxQTL3
markerCols	hg/lib/chromGraphFactory.c	/^static int markerCols(char *markerType)$/;"	f	file:
markerId	hg/inc/stsMapMouse.h	/^    unsigned markerId;	\/* Marker Identification number of STS *\/$/;"	m	struct:stsMapMouse
markerType	hg/inc/rhMapInfo.h	/^    char *markerType;	\/* Type of marker *\/$/;"	m	struct:rhMapInfo
markerType	hg/inc/rhMapZfishInfo.h	/^    char *markerType;	\/* Type of marker *\/$/;"	m	struct:rhMapZfishInfo
markerTypeRecognizer	hg/lib/chromGraphFactory.c	/^struct markerTypeRecognizer$/;"	s	file:
marshfieldAvg	hg/inc/recombRate.h	/^    float marshfieldAvg;	\/* Calculated Marshfield recombination rate *\/$/;"	m	struct:recombRate
marshfieldChr	hg/inc/stsInfo.h	/^    char *marshfieldChr;	\/* Chromosome in Marshfield map *\/$/;"	m	struct:stsInfo
marshfieldChr	hg/inc/stsInfo2.h	/^    char *marshfieldChr;	\/* Chromosome in Marshfield map *\/$/;"	m	struct:stsInfo2
marshfieldChrom	hg/inc/stsMap.h	/^    char *marshfieldChrom;	\/* Chromosome (no chr) from Marshfield map or 0 if none *\/$/;"	m	struct:stsMap
marshfieldChrom	hg/inc/stsMarker.h	/^    char *marshfieldChrom;	\/* Chromosome (no chr) from Marshfield map or 0 if none *\/$/;"	m	struct:stsMarker
marshfieldFemale	hg/inc/recombRate.h	/^    float marshfieldFemale;	\/* Calculated Marshfield female recombination rate *\/$/;"	m	struct:recombRate
marshfieldLOD	hg/inc/stsInfo.h	/^    float marshfieldLOD;	\/* LOD score in Marshfield map *\/$/;"	m	struct:stsInfo
marshfieldLOD	hg/inc/stsInfo2.h	/^    float marshfieldLOD;	\/* LOD score in Marshfield map *\/$/;"	m	struct:stsInfo2
marshfieldMale	hg/inc/recombRate.h	/^    float marshfieldMale;	\/* Calculated Marshfield male recombination rate *\/$/;"	m	struct:recombRate
marshfieldName	hg/inc/stsInfo.h	/^    char *marshfieldName;	\/* Name in Marshfield map *\/$/;"	m	struct:stsInfo
marshfieldName	hg/inc/stsInfo2.h	/^    char *marshfieldName;	\/* Name in Marshfield map *\/$/;"	m	struct:stsInfo2
marshfieldPos	hg/inc/stsInfo.h	/^    float marshfieldPos;	\/* Position in Marshfield map *\/$/;"	m	struct:stsInfo
marshfieldPos	hg/inc/stsInfo2.h	/^    float marshfieldPos;	\/* Position in Marshfield map *\/$/;"	m	struct:stsInfo2
marshfieldPos	hg/inc/stsMap.h	/^    float marshfieldPos;	\/* Position on Marshfield map *\/$/;"	m	struct:stsMap
marshfieldPos	hg/inc/stsMarker.h	/^    float marshfieldPos;	\/* Position on Marshfield map *\/$/;"	m	struct:stsMarker
mask	inc/dnaseq.h	/^    Bits* mask;           \/* Repeat mask (optional) *\/$/;"	m	struct:dnaSeq
mask	inc/hash.h	/^    bits32 mask;	\/* Mask hashCrc with this to get it to fit table. *\/$/;"	m	struct:hash
maskBlockCount	inc/twoBit.h	/^    bits32 maskBlockCount;	\/* Count of masked blocks. *\/$/;"	m	struct:twoBit
maskFromOut	jkOwnLib/gfClientLib.c	/^static void maskFromOut(struct dnaSeq *seqList, char *outFile, float minRepDivergence)$/;"	f	file:
maskFromUpperCaseSeq	lib/dnaseq.c	/^Bits *maskFromUpperCaseSeq(bioSeq *seq)$/;"	f
maskHash	inc/genoFind.h	/^    struct hash *maskHash;	\/* associates target sequence name and mask. *\/$/;"	m	struct:gfOutput	typeref:struct:gfOutput::hash
maskHeadPolyT	lib/dnautil.c	/^int maskHeadPolyT(DNA *dna, int size)$/;"	f
maskNucSeqList	jkOwnLib/gfClientLib.c	/^static void maskNucSeqList(struct dnaSeq *seqList, char *seqFileName, char *maskType,$/;"	f	file:
maskSimplePepRepeat	jkOwnLib/genoFind.c	/^static void maskSimplePepRepeat(struct genoFind *gf)$/;"	f	file:
maskSizes	inc/twoBit.h	/^    bits32 *maskSizes;		\/* Sizes of masked regions. *\/$/;"	m	struct:twoBit
maskStarts	inc/twoBit.h	/^    bits32 *maskStarts;		\/* Starts of masked regions. *\/$/;"	m	struct:twoBit
maskTailPolyA	lib/dnautil.c	/^int maskTailPolyA(DNA *dna, int size)$/;"	f
maskedBits	inc/genoFind.h	/^    Bits *maskedBits;	\/* If non-null contains repeat-masking info. *\/$/;"	m	struct:gfSeqSource
match	hg/inc/pslWScore.h	/^    unsigned match;	\/* Number of bases that match that aren't repeats *\/$/;"	m	struct:pslWScore
match	hg/inc/splignAlign.h	/^    int match;	\/* number of match bases *\/$/;"	m	struct:splignAlign
match	inc/psl.h	/^    unsigned match;	\/* Number of bases that match that aren't repeats *\/$/;"	m	struct:psl
match	inc/xAli.h	/^    unsigned match;	\/* Number of bases that match that aren't repeats *\/$/;"	m	struct:xAli
match	jkOwnLib/bandExt.c	/^   int match;$/;"	m	struct:score	file:
matchAsWellSoftEnd	hg/lib/ggGraph.c	/^boolean matchAsWellSoftEnd(struct geneGraph *gg, struct ggMrnaCluster *mc,$/;"	f
matchAsWellSoftStart	hg/lib/ggGraph.c	/^boolean matchAsWellSoftStart(struct geneGraph *gg, struct ggMrnaCluster *mc,$/;"	f
matchB	hg/inc/genomicDups.h	/^    unsigned matchB;	\/* aligned bases that match *\/$/;"	m	struct:genomicDups
matchB	hg/inc/genomicSuperDups.h	/^    unsigned matchB;	\/* aligned bases that match *\/$/;"	m	struct:genomicSuperDups
matchCount	inc/blastParse.h	/^    int matchCount;                     \/* Number of matching nucleotides. *\/$/;"	m	struct:blastBlock
matchEnzymes	hg/lib/cutter.c	/^struct bed *matchEnzymes(struct cutter *cutters, struct dnaSeq *seq, int startOffset)$/;"	f
matchInMem	jkOwnLib/fuzzyFind.c	/^DNA *matchInMem(DNA *ns, DNA *ne, DNA *hs, DNA *he)$/;"	f
matchLength	hg/inc/rnaHybridization.h	/^    unsigned matchLength;	\/* Length of hybridization site *\/$/;"	m	struct:rnaHybridization
matchScore	jkOwnLib/xensmall.c	258;"	d	file:
matchScore	jkOwnLib/xensmall.c	460;"	d	file:
matchScore	lib/axtAffine.c	180;"	d	file:
matchScore	lib/axtAffine.c	54;"	d	file:
matchSize	hg/inc/cutter.h	/^    unsigned matchSize;	\/* size without N's *\/$/;"	m	struct:cutter
matchState	jkOwnLib/xensmall.c	269;"	d	file:
matchState	jkOwnLib/xensmall.c	465;"	d	file:
matchState	lib/axtAffine.c	185;"	d	file:
matchState	lib/axtAffine.c	65;"	d	file:
matches	hg/inc/pseudoGeneLink.h	/^    unsigned matches;	\/* matches + repMatches *\/$/;"	m	struct:pseudoGeneLink
matches	hg/inc/pslWQueryID.h	/^    unsigned matches;	\/* Number of bases that match that aren't repeats *\/$/;"	m	struct:pslWQueryID
matches	hg/inc/retroMrnaInfo.h	/^    unsigned matches;	\/* matches + repMatches col27 *\/$/;"	m	struct:retroMrnaInfo
matches	hg/inc/ucscRetroInfo.h	/^    unsigned matches;	\/* matches + repMatches col27 *\/$/;"	m	struct:ucscRetroInfo
matches	hg/lib/chromGraphFactory.c	/^    int matches;	\/* Count of matches. *\/$/;"	m	struct:markerTypeRecognizer	file:
matchingBase	hg/lib/cutter.c	/^boolean matchingBase(char enzBase, char seqBase)$/;"	f
matchingCharBeforeInLimits	lib/common.c	/^char *matchingCharBeforeInLimits(char *limit, char *s, char c)$/;"	f
matchingExtId	hg/lib/genePix.c	/^struct slInt *matchingExtId(struct sqlConnection *conn, char *acc, char *field)$/;"	f
matchingExtId	hg/lib/visiGene.c	/^struct slInt *matchingExtId(struct sqlConnection *conn, char *acc, char *field)$/;"	f
matchingOption	lib/options.c	/^static struct optionSpec *matchingOption(char *name, struct optionSpec *optionSpecs)$/;"	f	file:
matricesInSync	hg/lib/geneGraph.c	/^boolean matricesInSync(struct geneGraph *gg)$/;"	f
matrix	inc/axt.h	/^    int matrix[256][256];   \/* Look up with letters. *\/$/;"	m	struct:axtScoreScheme
matrixSqueeze	hg/lib/hui.c	/^static boolean matrixSqueeze(membersForAll_t* membersForAll)$/;"	f	file:
matrixXheadings	hg/lib/hui.c	/^static boolean matrixXheadings(char *db,struct trackDb *parentTdb, membersForAll_t* membersForAll,boolean top)$/;"	f	file:
matrixXheadingsRow1	hg/lib/hui.c	/^static void matrixXheadingsRow1(char *db,struct trackDb *parentTdb,boolean squeeze, membersForAll_t* membersForAll,boolean top)$/;"	f	file:
matrixXheadingsRow2	hg/lib/hui.c	/^static void matrixXheadingsRow2(struct trackDb *parentTdb, boolean squeeze, membersForAll_t* membersForAll)$/;"	f	file:
matrixYheadings	hg/lib/hui.c	/^static void matrixYheadings(char *db,struct trackDb *parentTdb, membersForAll_t* membersForAll,int ixY,boolean left)$/;"	f	file:
mature_miRNA_variant	hg/inc/soterm.h	/^    mature_miRNA_variant=1620,$/;"	e	enum:__anon11
max	inc/annoFilter.h	/^    union aNumber max;		\/\/ Highest valid threshold value$/;"	m	struct:annoFilter	typeref:union:annoFilter::aNumber
max	inc/common.h	1182;"	d
max3	lib/memgfx.c	44;"	d	file:
maxAbortHandlers	lib/errabort.c	30;"	d	file:
maxAlignedOverlap	jkOwnLib/xenbig.c	/^static void maxAlignedOverlap(char *a1, char *a2, char *b1, char *b2, int size,$/;"	f	file:
maxAlloc	lib/memalloc.c	/^static size_t maxAlloc = (size_t)128*8*1024*1024*(sizeof(size_t)\/4)*(sizeof(size_t)\/4)*(sizeof(size_t)\/4*(sizeof(size_t)\/4));$/;"	v	file:
maxBlockCount	jkOwnLib/patSpace.c	17;"	d	file:
maxBlockCount	jkOwnLib/patSpace.c	25;"	d	file:
maxChromName	hg/inc/customTrack.h	/^    int maxChromName;		\/* max chromName length	*\/$/;"	m	struct:customTrack
maxDataLength	hg/inc/mysqlTableStatus.h	/^    int maxDataLength;	\/* Maximum length of data file *\/$/;"	m	struct:mysqlTableStatus
maxDataLength	hg/inc/tableStatus.h	/^    long long maxDataLength;	\/* Maximum data length for this table type *\/$/;"	m	struct:tableStatus
maxDepth	hg/lib/chainNetDbLoad.c	/^    int maxDepth;		\/* Maximum depth allowed. *\/$/;"	m	struct:cnlHelper	file:
maxDigits	lib/seqOut.c	/^static int maxDigits(int x, int y)$/;"	f	file:
maxDist	lib/dgRange.c	/^   int minDist, maxDist;$/;"	m	struct:bfRange	file:
maxErr	inc/gff3.h	/^    int maxErr;             \/* maximum number of errors before aborting *\/$/;"	m	struct:gff3File
maxErr	inc/vcf.h	/^    int maxErr;			\/\/ Maximum number of errors before aborting$/;"	m	struct:vcfFile
maxEvidence	hg/lib/ggGraph.c	/^static int maxEvidence = 500;$/;"	v	file:
maxFreq	hg/inc/hapmapPhaseIIISummary.h	/^    float maxFreq;	\/* Maximum minor allele frequency across all populations *\/$/;"	m	struct:hapmapPhaseIIISummary
maxGap	inc/genoFind.h	/^    int maxGap;                          \/* Max gap between tiles in a clump. *\/$/;"	m	struct:genoFind
maxGap	jkOwnLib/patSpace.c	/^    int maxGap;                          \/* Max gap between tiles in a clump. *\/$/;"	m	struct:patSpace	file:
maxGapToFill	hg/inc/chromGraph.h	/^    int maxGapToFill;		\/* Maximum gap to fill with line *\/$/;"	m	struct:chromGraphSettings
maxHitsAtOnce	jkOwnLib/crudeali.c	560;"	d	file:
maxIt	lib/rbTree.c	/^static void *minIt, *maxIt;$/;"	v	file:
maxLineSize	jkOwnLib/xenbig.c	108;"	d	file:
maxNameSize	inc/snof.h	/^    int maxNameSize;$/;"	m	struct:snof
maxNameSize	lib/fof.c	/^    int maxNameSize;             \/* Size allocated for index field in index. *\/$/;"	m	struct:fof	file:
maxNameSize	lib/fof.c	/^static bits16 maxNameSize;      \/* Maximum size we've seen. *\/$/;"	v	file:
maxNumConnections	hg/lib/jksql.c	/^static unsigned maxNumConnections = 0;$/;"	v	file:
maxOutput	hg/inc/wiggle.h	/^    unsigned long long maxOutput;  \/*	maximum items fetched	*\/$/;"	m	struct:wiggleDataStream
maxOverlap	hg/inc/pseudoGeneLink.h	/^    int maxOverlap;	\/* largest overlap with another mrna *\/$/;"	m	struct:pseudoGeneLink
maxOverlap	hg/inc/retroMrnaInfo.h	/^    int maxOverlap;	\/* largest overlap with another mrna col40 *\/$/;"	m	struct:retroMrnaInfo
maxOverlap	hg/inc/ucscRetroInfo.h	/^    int maxOverlap;	\/* largest overlap with another mrna col38 *\/$/;"	m	struct:ucscRetroInfo
maxPat	inc/genoFind.h	/^    int maxPat;                          \/* Max # of times pattern can occur$/;"	m	struct:genoFind
maxPat	jkOwnLib/patSpace.c	/^    psBits maxPat;                       \/* Max # of times pattern can occur$/;"	m	struct:patSpace	file:
maxPatCount	jkOwnLib/patSpace.c	34;"	d	file:
maxPixels	hg/inc/chromGraph.h	/^    int maxPixels;		\/* Maximum allowed pixels. *\/$/;"	m	struct:chromGraphSettings
maxPos	inc/binRange.h	/^    int maxPos;		\/* Maximum position to bin. *\/$/;"	m	struct:binKeeper
maxQ	lib/chainBlock.c	/^    int maxQ;		      \/* Maximum qEnd of any leaf below us. *\/$/;"	m	struct:kdBranch	file:
maxRetries	inc/rudp.h	/^    int maxRetries;	\/* Maximum number of retries per message. *\/$/;"	m	struct:rudp
maxRows	inc/spaceSaver.h	/^    int maxRows;	      \/* Maximum number of rows.  *\/$/;"	m	struct:spaceSaver
maxScore	lib/chainBlock.c	/^    double maxScore;	      \/* Max score of any leaf below us. *\/$/;"	m	struct:kdBranch	file:
maxStartsOffset	hg/lib/hgSeq.c	/^static int maxStartsOffset = 0;$/;"	v	file:
maxSubScore	inc/peakCluster.h	/^    double maxSubScore;		\/* Max of component scores. *\/$/;"	m	struct:peakCluster
maxT	lib/chainBlock.c	/^    int maxT;		      \/* Maximum tEnd of any leaf below us. *\/$/;"	m	struct:kdBranch	file:
maxTileSize	jkOwnLib/crudeali.c	18;"	d	file:
maxTotalBases	jkOwnLib/genoFind.c	/^long long maxTotalBases()$/;"	f
maxVal	hg/inc/chromGraph.h	/^    double minVal, maxVal;	\/* Max\/min data range *\/$/;"	m	struct:chromGraphSettings
maxVal	hg/inc/chromGraph.h	/^    double minVal, maxVal;	\/* Min\/max values in file *\/$/;"	m	struct:chromGraphBin
maxVal	hg/inc/metaChromGraph.h	/^    double maxVal;	\/* Maximum value observed *\/$/;"	m	struct:metaChromGraph
maxVal	hg/lib/chromGraphFactory.c	/^    double minVal,maxVal;	\/* Min\/mas values in graph *\/$/;"	m	struct:labeledFile	file:
maxVal	inc/bbiFile.h	/^    double maxVal;		\/* Maximum value of items *\/$/;"	m	struct:bbiSummaryElement
maxVal	inc/bbiFile.h	/^    float maxVal;		\/* Maximum value of items *\/$/;"	m	struct:bbiSummary
maxVal	inc/bbiFile.h	/^    float maxVal;		\/* Maximum value of items *\/$/;"	m	struct:bbiSummaryOnDisk
maxWarnHandlers	lib/errabort.c	29;"	d	file:
max_code	lib/gifcomp.c	/^static short max_code;$/;"	v	file:
mayProcessDb	hg/lib/chromGraphFactory.c	/^boolean mayProcessDb(struct sqlConnection *conn,$/;"	f
mayProcessGenomic	hg/lib/chromGraphFactory.c	/^boolean mayProcessGenomic(struct sqlConnection *conn, struct customPp *cpp, $/;"	f
maybeSetCurrentDir	lib/osunix.c	/^boolean maybeSetCurrentDir(char *newDir)$/;"	f
maybeSkipHubPrefix	hg/lib/trackDbCustom.c	/^char *maybeSkipHubPrefix(char *track)$/;"	f
maybeTouchFile	lib/osunix.c	/^boolean maybeTouchFile(char *fileName)$/;"	f
mcnBreakpoints	hg/inc/mcnBreakpoints.h	/^struct mcnBreakpoints$/;"	s
mcnBreakpointsCommaIn	hg/lib/mcnBreakpoints.c	/^struct mcnBreakpoints *mcnBreakpointsCommaIn(char **pS, struct mcnBreakpoints *ret)$/;"	f
mcnBreakpointsCommaOut	hg/inc/mcnBreakpoints.h	55;"	d
mcnBreakpointsFree	hg/lib/mcnBreakpoints.c	/^void mcnBreakpointsFree(struct mcnBreakpoints **pEl)$/;"	f
mcnBreakpointsFreeList	hg/lib/mcnBreakpoints.c	/^void mcnBreakpointsFreeList(struct mcnBreakpoints **pList)$/;"	f
mcnBreakpointsLoad	hg/lib/mcnBreakpoints.c	/^struct mcnBreakpoints *mcnBreakpointsLoad(char **row)$/;"	f
mcnBreakpointsLoadAll	hg/lib/mcnBreakpoints.c	/^struct mcnBreakpoints *mcnBreakpointsLoadAll(char *fileName) $/;"	f
mcnBreakpointsOutput	hg/lib/mcnBreakpoints.c	/^void mcnBreakpointsOutput(struct mcnBreakpoints *el, FILE *f, char sep, char lastSep) $/;"	f
mcnBreakpointsStaticLoad	hg/lib/mcnBreakpoints.c	/^void mcnBreakpointsStaticLoad(char **row, struct mcnBreakpoints *ret)$/;"	f
mcnBreakpointsTabOut	hg/inc/mcnBreakpoints.h	52;"	d
md5_context	inc/md5.h	/^struct md5_context$/;"	s
md5_finish	lib/md5.c	/^void md5_finish( struct md5_context *ctx, uint8 digest[16] )$/;"	f
md5_padding	lib/md5.c	/^static uint8 md5_padding[64] =$/;"	v	file:
md5_process	lib/md5.c	/^void md5_process( struct md5_context *ctx, uint8 data[64] )$/;"	f
md5_starts	lib/md5.c	/^void md5_starts( struct md5_context *ctx )$/;"	f
md5_update	lib/md5.c	/^void md5_update( struct md5_context *ctx, uint8 *input, uint32 length )$/;"	f
mdb	hg/inc/fileUi.h	/^    struct mdbObj *mdb;      \/\/ The files are not trackDb entries but are found in the metaDb only$/;"	m	struct:fileDb	typeref:struct:fileDb::mdbObj
mdb	hg/inc/mdb.h	/^struct mdb$/;"	s
mdb	hg/inc/trackDb.h	/^    struct mdbObj *mdb;        \/\/ several CGIs need repeated access to a tracks metadata$/;"	m	struct:tdbExtras	typeref:struct:tdbExtras::mdbObj
mdbByVar	hg/inc/mdb.h	/^struct mdbByVar$/;"	s
mdbByVarAppend	hg/lib/mdb.c	/^boolean mdbByVarAppend(struct mdbByVar *mdbByVars,char *var,char *val,boolean notEqual)$/;"	f
mdbByVarContains	hg/lib/mdb.c	/^boolean mdbByVarContains(struct mdbByVar *mdbByVar, char *val, char *obj)$/;"	f
mdbByVarCount	hg/lib/mdb.c	/^int mdbByVarCount(struct mdbByVar *mdbByVars,boolean vars, boolean vals)$/;"	f
mdbByVarCreate	hg/lib/mdb.c	/^struct mdbByVar*mdbByVarCreate(char *var, char *val)$/;"	f
mdbByVarFree	hg/inc/mdb.h	475;"	d
mdbByVarPrint	hg/lib/mdb.c	/^void mdbByVarPrint(struct mdbByVar *mdbByVars,boolean raStyle)$/;"	f
mdbByVarQueryByVar	hg/lib/mdb.c	/^struct mdbByVar *mdbByVarQueryByVar(struct sqlConnection *conn,char *table,char *varName,char *val)$/;"	f
mdbByVarsFree	hg/lib/mdb.c	/^void mdbByVarsFree(struct mdbByVar **mdbByVarsPtr)$/;"	f
mdbByVarsLineParse	hg/lib/mdb.c	/^struct mdbByVar *mdbByVarsLineParse(char *line)$/;"	f
mdbByVarsLoadFromMemory	hg/lib/mdb.c	/^static struct mdbByVar *mdbByVarsLoadFromMemory(struct mdb **mdbPtr,boolean buildHashes)$/;"	f	file:
mdbByVarsQuery	hg/lib/mdb.c	/^struct mdbByVar *mdbByVarsQuery(struct sqlConnection *conn,char *table,struct mdbByVar *mdbByVars)$/;"	f
mdbByVarsQueryAll	hg/inc/mdb.h	263;"	d
mdbCommaIn	hg/lib/mdb.c	/^struct mdb *mdbCommaIn(char **pS, struct mdb *ret)$/;"	f
mdbCommaOut	hg/inc/mdb.h	83;"	d
mdbFree	hg/lib/mdb.c	/^void mdbFree(struct mdb **pEl)$/;"	f
mdbFreeList	hg/lib/mdb.c	/^void mdbFreeList(struct mdb **pList)$/;"	f
mdbJsonOutput	hg/lib/mdb.c	/^void mdbJsonOutput(struct mdb *el, FILE *f)$/;"	f
mdbLeafObj	hg/inc/mdb.h	/^struct mdbLeafObj$/;"	s
mdbLeafObjFree	hg/lib/mdb.c	/^static void mdbLeafObjFree(struct mdbLeafObj **leafObjPtr)$/;"	f	file:
mdbLimbVal	hg/inc/mdb.h	/^struct mdbLimbVal$/;"	s
mdbLimbValFree	hg/lib/mdb.c	/^static void mdbLimbValFree(struct mdbLimbVal **limbValPtr)$/;"	f	file:
mdbLoad	hg/lib/mdb.c	/^struct mdb *mdbLoad(char **row)$/;"	f
mdbLoadAll	hg/lib/mdb.c	/^struct mdb *mdbLoadAll(char *fileName)$/;"	f
mdbLoadAllByChar	hg/lib/mdb.c	/^struct mdb *mdbLoadAllByChar(char *fileName, char chopper)$/;"	f
mdbLoadAllByTab	hg/inc/mdb.h	61;"	d
mdbLoadByQuery	hg/lib/mdb.c	/^struct mdb *mdbLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
mdbObj	hg/inc/mdb.h	/^struct mdbObj$/;"	s
mdbObjAddVarPairs	hg/lib/mdb.c	/^struct mdbObj *mdbObjAddVarPairs(struct mdbObj *oldObj,char *varPairs)$/;"	f
mdbObjCRC	hg/lib/mdb.c	/^static int mdbObjCRC(struct mdbObj *mdbObjs)$/;"	f	file:
mdbObjClone	hg/lib/mdb.c	/^struct mdbObj *mdbObjClone(const struct mdbObj *mdbObj)$/;"	f
mdbObjCmp	hg/lib/mdb.c	/^int mdbObjCmp(const void *va, const void *vb)$/;"	f
mdbObjContains	hg/lib/mdb.c	/^boolean mdbObjContains(struct mdbObj *mdbObj, char *var, char *val)$/;"	f
mdbObjCount	hg/lib/mdb.c	/^int mdbObjCount(struct mdbObj *mdbObjs,boolean objs)$/;"	f
mdbObjCreate	hg/lib/mdb.c	/^struct mdbObj *mdbObjCreate(char *obj,char *var, char *val)$/;"	f
mdbObjEncodeEdvsAsMdbVars	hg/lib/mdb.c	/^static struct mdbVar *mdbObjEncodeEdvsAsMdbVars(struct mdbObj *mdbObj,struct slName *compositeEdvs,boolean includeNone)$/;"	f	file:
mdbObjFind	hg/lib/mdb.c	/^struct mdbVar *mdbObjFind(struct mdbObj *mdbObj, char *var)$/;"	f
mdbObjFindCompositeEncodeEdvs	hg/inc/mdb.h	436;"	d
mdbObjFindCompositeNamedEncodeEdvs	hg/lib/mdb.c	/^struct slName *mdbObjFindCompositeNamedEncodeEdvs(struct sqlConnection *conn,char *tableName,struct mdbObj *mdbObj)$/;"	f
mdbObjFindEncodeEdvPairs	hg/lib/mdb.c	/^struct mdbVar *mdbObjFindEncodeEdvPairs(struct sqlConnection *conn,char *tableName,struct mdbObj *mdbObj,boolean includeNone)$/;"	f
mdbObjFindEncodeEdvs	hg/inc/mdb.h	441;"	d
mdbObjFindValue	hg/lib/mdb.c	/^char *mdbObjFindValue(struct mdbObj *mdbObj, char *var)$/;"	f
mdbObjFree	hg/inc/mdb.h	467;"	d
mdbObjGetNamedEncodeEdvs	hg/lib/mdb.c	/^static struct slName *mdbObjGetNamedEncodeEdvs(struct mdbObj *compObj)$/;"	f	file:
mdbObjInComposite	hg/lib/mdb.c	/^boolean mdbObjInComposite(struct mdbObj *mdb, char *composite)$/;"	f
mdbObjIntersection	hg/lib/mdb.c	/^struct mdbObj *mdbObjIntersection(struct mdbObj **pA, struct mdbObj *b)$/;"	f
mdbObjIsComposite	hg/lib/mdb.c	/^boolean mdbObjIsComposite(struct mdbObj *mdbObj)$/;"	f
mdbObjIsCompositeMember	hg/lib/mdb.c	/^boolean mdbObjIsCompositeMember(struct mdbObj *mdbObj)$/;"	f
mdbObjIsEncode	hg/lib/mdb.c	/^boolean mdbObjIsEncode(struct mdbObj *mdb)$/;"	f
mdbObjNameSearch	hg/lib/mdb.c	/^struct slName *mdbObjNameSearch(struct sqlConnection *conn, char *var, char *val, char *op, int limit, boolean tables, boolean files)$/;"	f
mdbObjNew	hg/lib/mdb.c	/^struct mdbObj *mdbObjNew(char *obj,struct mdbVar *mdbVars)$/;"	f
mdbObjPrint	hg/lib/mdb.c	/^void mdbObjPrint(struct mdbObj *mdbObjs,boolean raStyle)$/;"	f
mdbObjPrintOrderedToStream	hg/lib/mdb.c	/^void mdbObjPrintOrderedToStream(FILE *outF,struct mdbObj **mdbObjs,char *order, char *separator, boolean header)$/;"	f
mdbObjPrintToFile	hg/lib/mdb.c	/^void mdbObjPrintToFile(struct mdbObj *mdbObjs,boolean raStyle, char *file)$/;"	f
mdbObjPrintToStream	hg/lib/mdb.c	/^void mdbObjPrintToStream(struct mdbObj *mdbObjs,boolean raStyle, FILE *outF )$/;"	f
mdbObjPrintToTabFile	hg/lib/mdb.c	/^int mdbObjPrintToTabFile(struct mdbObj *mdbObjs, char *file)$/;"	f
mdbObjQuery	hg/lib/mdb.c	/^struct mdbObj *mdbObjQuery(struct sqlConnection *conn,char *table,struct mdbObj *mdbObj)$/;"	f
mdbObjQueryByObj	hg/lib/mdb.c	/^struct mdbObj *mdbObjQueryByObj(struct sqlConnection *conn,char *table,char *obj,char *var)$/;"	f
mdbObjQueryComposite	hg/inc/mdb.h	289;"	d
mdbObjQueryCompositeObj	hg/lib/mdb.c	/^struct mdbObj *mdbObjQueryCompositeObj(struct sqlConnection *conn,char *tableName,struct mdbObj *mdbObj)$/;"	f
mdbObjRemoveHiddenVars	hg/lib/mdb.c	/^void mdbObjRemoveHiddenVars(struct mdbObj *mdbObjs)$/;"	f
mdbObjRemoveOneVar	hg/lib/mdb.c	/^boolean mdbObjRemoveOneVar(struct mdbObj *mdbObj, char *var, char *val)$/;"	f
mdbObjRemoveVars	hg/lib/mdb.c	/^void mdbObjRemoveVars(struct mdbObj *mdbObjs, char *vars)$/;"	f
mdbObjReorderByCv	hg/lib/mdb.c	/^void mdbObjReorderByCv(struct mdbObj *mdbObjs, boolean includeHidden)$/;"	f
mdbObjReorderVars	hg/lib/mdb.c	/^void mdbObjReorderVars(struct mdbObj *mdbObjs, char *vars,boolean back)$/;"	f
mdbObjRepeatedSearch	hg/lib/mdb.c	/^struct mdbObj *mdbObjRepeatedSearch(struct sqlConnection *conn,struct slPair *varValPairs,boolean tables,boolean files)$/;"	f
mdbObjSearch	hg/lib/mdb.c	/^struct mdbObj *mdbObjSearch(struct sqlConnection *conn, char *var, char *val, char *op, int limit)$/;"	f
mdbObjSetVar	hg/lib/mdb.c	/^boolean mdbObjSetVar(struct mdbObj *mdbObj, char *var,char *val)$/;"	f
mdbObjSetVarInt	hg/lib/mdb.c	/^boolean mdbObjSetVarInt(struct mdbObj *mdbObj, char *var,int val)$/;"	f
mdbObjSwapVars	hg/lib/mdb.c	/^void mdbObjSwapVars(struct mdbObj *mdbObjs, char *vars,boolean deleteThis)$/;"	f
mdbObjToSlName	hg/lib/mdb.c	/^struct slName *mdbObjToSlName(struct mdbObj *mdbObjs)$/;"	f
mdbObjTransformToUpdate	hg/lib/mdb.c	/^void mdbObjTransformToUpdate(struct mdbObj *mdbObjs, char *var, char *val,boolean deleteThis)$/;"	f
mdbObjVarCmp	hg/lib/mdb.c	/^int mdbObjVarCmp(const void *va, const void *vb)$/;"	f
mdbObjVarValPairsAsLine	hg/lib/mdb.c	/^char *mdbObjVarValPairsAsLine(struct mdbObj *mdbObj,boolean objTypeExclude,boolean cvLabels)$/;"	f
mdbObjsCommonVars	hg/lib/mdb.c	/^struct mdbObj *mdbObjsCommonVars(struct mdbObj *mdbObjs)$/;"	f
mdbObjsContainAltleastOneMatchingVar	hg/lib/mdb.c	/^boolean mdbObjsContainAltleastOneMatchingVar(struct mdbObj *mdbObjs, char *var, char *val)$/;"	f
mdbObjsContainAtleastOne	hg/inc/mdb.h	338;"	d
mdbObjsEncodeExperimentify	hg/lib/mdb.c	/^struct mdbObj *mdbObjsEncodeExperimentify(struct sqlConnection *conn,char *db,char *tableName,char *expTable,$/;"	f
mdbObjsFilter	hg/lib/mdb.c	/^struct mdbObj *mdbObjsFilter(struct mdbObj **pMdbObjs, char *var, char *val,boolean returnMatches)$/;"	f
mdbObjsFilterByVars	hg/lib/mdb.c	/^struct mdbObj *mdbObjsFilterByVars(struct mdbObj **pMdbObjs,char *vars,boolean noneEqualsNotFound,boolean returnMatches)$/;"	f
mdbObjsFilterTablesOrFiles	hg/lib/mdb.c	/^struct mdbObj *mdbObjsFilterTablesOrFiles(struct mdbObj **pMdbObjs,boolean tables, boolean files)$/;"	f
mdbObjsFindAllVals	hg/lib/mdb.c	/^struct slName *mdbObjsFindAllVals(struct mdbObj *mdbObjs, char *var, char *emptyToken)$/;"	f
mdbObjsFree	hg/lib/mdb.c	/^void mdbObjsFree(struct mdbObj **mdbObjsPtr)$/;"	f
mdbObjsHasCommonVar	hg/lib/mdb.c	/^boolean mdbObjsHasCommonVar(struct mdbObj *mdbList, char *var, boolean missingOk)$/;"	f
mdbObjsLoadFromFormattedFile	hg/lib/mdb.c	/^struct mdbObj *mdbObjsLoadFromFormattedFile(char *fileName,boolean *validated)$/;"	f
mdbObjsLoadFromHashes	hg/lib/mdb.c	/^struct mdbObj *mdbObjsLoadFromHashes(struct hash *objsHash)$/;"	f
mdbObjsLoadFromMemory	hg/lib/mdb.c	/^static struct mdbObj *mdbObjsLoadFromMemory(struct mdb **mdbPtr,boolean buildHashes)$/;"	f	file:
mdbObjsLoadFromRAFile	hg/lib/mdb.c	/^struct mdbObj *mdbObjsLoadFromRAFile(char *fileName,boolean *validated)$/;"	f
mdbObjsLoadToDb	hg/lib/mdb.c	/^int mdbObjsLoadToDb(struct sqlConnection *conn,char *tableName,struct mdbObj *mdbObjs,boolean testOnly)$/;"	f
mdbObjsQueryAll	hg/inc/mdb.h	255;"	d
mdbObjsQueryByVarPairs	hg/lib/mdb.c	/^struct mdbObj *mdbObjsQueryByVarPairs(struct sqlConnection *conn,char *tableName,struct slPair *varValPairs)$/;"	f
mdbObjsQueryByVarValPairs	hg/inc/mdb.h	285;"	d
mdbObjsQueryByVarValString	hg/lib/mdb.c	/^struct mdbObj *mdbObjsQueryByVarValString(struct sqlConnection *conn,char *tableName,char *varVals)$/;"	f
mdbObjsQueryByVarVals	hg/inc/mdb.h	279;"	d
mdbObjsQueryByVars	hg/lib/mdb.c	/^struct mdbObj *mdbObjsQueryByVars(struct sqlConnection *conn,char *table,struct mdbByVar *mdbByVars)$/;"	f
mdbObjsSetToDb	hg/lib/mdb.c	/^int mdbObjsSetToDb(struct sqlConnection *conn,char *tableName,struct mdbObj *mdbObjs,boolean replace,boolean testOnly)$/;"	f
mdbObjsSortOnCv	hg/lib/mdb.c	/^void mdbObjsSortOnCv(struct mdbObj **mdbObjs, boolean includeHidden)$/;"	f
mdbObjsSortOnVarPairs	hg/lib/mdb.c	/^void mdbObjsSortOnVarPairs(struct mdbObj **mdbObjs,struct slPair *varValPairs)$/;"	f
mdbObjsSortOnVars	hg/lib/mdb.c	/^void mdbObjsSortOnVars(struct mdbObj **mdbObjs, char *vars)$/;"	f
mdbObjsValidate	hg/lib/mdb.c	/^int mdbObjsValidate(struct mdbObj *mdbObjs, boolean full)$/;"	f
mdbOutput	hg/lib/mdb.c	/^void mdbOutput(struct mdb *el, FILE *f, char sep, char lastSep)$/;"	f
mdbPairLabel	hg/inc/mdb.h	511;"	d
mdbPairVal	hg/inc/mdb.h	510;"	d
mdbReCreate	hg/lib/mdb.c	/^void mdbReCreate(struct sqlConnection *conn,char *tblName,boolean testOnly)$/;"	f
mdbRemoveCommonVar	hg/lib/mdb.c	/^char *mdbRemoveCommonVar(struct mdbObj *mdbList, char *var)$/;"	f
mdbSaveToDb	hg/lib/mdb.c	/^void mdbSaveToDb(struct sqlConnection *conn, struct mdb *el, char *tableName, int updateSize)$/;"	f
mdbSaveToDbEscaped	hg/lib/mdb.c	/^void mdbSaveToDbEscaped(struct sqlConnection *conn, struct mdb *el, char *tableName, int updateSize)$/;"	f
mdbSearchableQueryRestictForTablesOrFiles	hg/lib/mdb.c	/^static void mdbSearchableQueryRestictForTablesOrFiles(struct dyString *dyQuery,char *tableName, char letter,boolean hasTableName, boolean hasFileName)$/;"	f	file:
mdbSelectPairs	hg/lib/search.c	/^struct slPair *mdbSelectPairs(struct cart *cart, struct slPair *mdbVars)$/;"	f
mdbSelectsHtmlRows	hg/lib/search.c	/^char *mdbSelectsHtmlRows(struct sqlConnection *conn,struct slPair *mdbSelects,struct slPair *mdbVars,int cols,boolean fileSearch)$/;"	f
mdbStaticLoad	hg/lib/mdb.c	/^void mdbStaticLoad(char **row, struct mdb *ret)$/;"	f
mdbTabOut	hg/inc/mdb.h	80;"	d
mdbTableName	hg/lib/mdb.c	/^char*mdbTableName(struct sqlConnection *conn,boolean mySandBox)$/;"	f
mdbTableNamePreferSandbox	hg/lib/mdb.c	/^static char*mdbTableNamePreferSandbox()$/;"	f	file:
mdbValLabelSearch	hg/lib/mdb.c	/^struct slPair *mdbValLabelSearch(struct sqlConnection *conn, char *var, int limit, boolean tags, boolean hasTableName, boolean hasFileName)$/;"	f
mdbValSearch	hg/lib/mdb.c	/^struct slName *mdbValSearch(struct sqlConnection *conn, char *var, int limit, boolean hasTableName, boolean hasFileName)$/;"	f
mdbVar	hg/inc/mdb.h	/^struct mdbVar$/;"	s
mdbVarAdd	hg/lib/mdb.c	/^static struct mdbVar *mdbVarAdd(struct mdbVar **pMdbVars, char *var, void *val)$/;"	f	file:
mdbVarCmp	hg/lib/mdb.c	/^int mdbVarCmp(const void *va, const void *vb)$/;"	f
mdbVarFree	hg/inc/mdb.h	471;"	d
mdbVarNew	hg/lib/mdb.c	/^static struct mdbVar *mdbVarNew(char *var, void *val)$/;"	f	file:
mdbVarValPrint	hg/lib/mdb.c	/^static void mdbVarValPrint(struct mdbVar *mdbVar,boolean raStyle, FILE *outF)$/;"	f	file:
mdbVarsFree	hg/lib/mdb.c	/^void mdbVarsFree(struct mdbVar **mdbVarsPtr)$/;"	f
mdbVarsSearchable	hg/lib/mdb.c	/^struct slPair *mdbVarsSearchable(struct sqlConnection *conn, boolean hasTableName, boolean hasFileName)$/;"	f
mean	hg/inc/wiggle.h	/^    double mean;	\/* mean of data points *\/$/;"	m	struct:wiggleStats
medianVal	lib/chainBlock.c	/^static int medianVal(struct dlList *list, int medianIx, int dim)$/;"	f	file:
meds	hg/inc/sage.h	/^    float *meds;	\/* The median count of all tags for each experiment. *\/$/;"	m	struct:sage
megablastInfo	hg/inc/megablastInfo.h	/^struct megablastInfo$/;"	s
megablastInfoCommaIn	hg/lib/megablastInfo.c	/^struct megablastInfo *megablastInfoCommaIn(char **pS, struct megablastInfo *ret)$/;"	f
megablastInfoCommaOut	hg/inc/megablastInfo.h	64;"	d
megablastInfoFree	hg/lib/megablastInfo.c	/^void megablastInfoFree(struct megablastInfo **pEl)$/;"	f
megablastInfoFreeList	hg/lib/megablastInfo.c	/^void megablastInfoFreeList(struct megablastInfo **pList)$/;"	f
megablastInfoLoad	hg/lib/megablastInfo.c	/^struct megablastInfo *megablastInfoLoad(char **row)$/;"	f
megablastInfoLoadAll	hg/lib/megablastInfo.c	/^struct megablastInfo *megablastInfoLoadAll(char *fileName) $/;"	f
megablastInfoLoadAllByChar	hg/lib/megablastInfo.c	/^struct megablastInfo *megablastInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
megablastInfoLoadAllByTab	hg/inc/megablastInfo.h	42;"	d
megablastInfoOutput	hg/lib/megablastInfo.c	/^void megablastInfoOutput(struct megablastInfo *el, FILE *f, char sep, char lastSep) $/;"	f
megablastInfoStaticLoad	hg/lib/megablastInfo.c	/^void megablastInfoStaticLoad(char **row, struct megablastInfo *ret)$/;"	f
megablastInfoTabOut	hg/inc/megablastInfo.h	61;"	d
meltTm	hg/inc/llaInfo.h	/^    float meltTm;	\/* PCR melting temperature *\/$/;"	m	struct:llaInfo
memGfx	inc/memgfx.h	/^struct memGfx$/;"	s
memGif	lib/vGif.c	/^struct memGif$/;"	s	file:
memGifClose	lib/vGif.c	/^void memGifClose(struct memGif **pG)$/;"	f
memHandler	inc/memalloc.h	/^struct memHandler$/;"	s
memMatch	lib/common.c	/^char *memMatch(char *needle, int nLen, char *haystack, int hLen)$/;"	f
memPng	lib/vPng.c	/^struct memPng$/;"	s	file:
memPngClose	lib/vPng.c	/^void memPngClose(struct memPng **pG)$/;"	f
memPool	inc/oldGff.h	/^    struct lm *memPool;$/;"	m	struct:gff	typeref:struct:gff::lm
memRead	inc/common.h	/^INLINE void memRead(char **pPt, void *buf, int size)$/;"	f
memReadBits16	lib/common.c	/^bits16 memReadBits16(char **pPt, boolean isSwapped)$/;"	f
memReadBits32	lib/common.c	/^bits32 memReadBits32(char **pPt, boolean isSwapped)$/;"	f
memReadBits64	lib/common.c	/^bits64 memReadBits64(char **pPt, boolean isSwapped)$/;"	f
memReadDouble	lib/common.c	/^double memReadDouble(char **pPt, boolean isSwapped)$/;"	f
memReadFloat	lib/common.c	/^float memReadFloat(char **pPt, boolean isSwapped)$/;"	f
memReadOne	inc/common.h	1100;"	d
memSwapChar	lib/common.c	/^char * memSwapChar(char *s, int len, char oldChar, char newChar)$/;"	f
memTracker	lib/memalloc.c	/^static struct memTracker *memTracker = NULL;	\/* Head in memTracker list. *\/$/;"	v	typeref:struct:memTracker	file:
memTracker	lib/memalloc.c	/^struct memTracker$/;"	s	file:
memTrackerAlloc	lib/memalloc.c	/^static void *memTrackerAlloc(size_t size)$/;"	f	file:
memTrackerEnd	lib/memalloc.c	/^void memTrackerEnd()$/;"	f
memTrackerFree	lib/memalloc.c	/^static void memTrackerFree(void *vpt)$/;"	f	file:
memTrackerRealloc	lib/memalloc.c	/^static void *memTrackerRealloc(void *vpt, size_t size)$/;"	f	file:
memTrackerStart	lib/memalloc.c	/^void memTrackerStart()$/;"	f
memWrite	inc/common.h	/^INLINE void memWrite(char **pPt, void *buf, int size)$/;"	f
memWriteFloat	inc/common.h	/^INLINE void memWriteFloat(char **pPt, float val)$/;"	f
memWriteOne	inc/common.h	1208;"	d
members	hg/lib/hui.c	/^    members_t* members[27];   \/\/ One struct for each dimension describing groups in dimension (e.g. cell: GM12878,K562)$/;"	m	struct:_membersForAll	file:
membersFindByTag	hg/lib/hui.c	/^const members_t*membersFindByTag(struct trackDb *parentTdb, char *tag)$/;"	f
membersForAll	hg/inc/trackDb.h	/^    struct _membersForAll *membersForAll; \/\/ hgTrackUi composites collect all view\/dimension info$/;"	m	struct:tdbExtras	typeref:struct:tdbExtras::_membersForAll
membersForAllFindSubGroupIx	hg/lib/hui.c	/^static int membersForAllFindSubGroupIx(membersForAll_t* membersForAll, char *tag)$/;"	f	file:
membersForAllSubGroupsFree	hg/lib/hui.c	/^static void membersForAllSubGroupsFree(struct trackDb *parentTdb, membersForAll_t** membersForAllPtr)$/;"	f	file:
membersForAllSubGroupsGet	hg/lib/hui.c	/^static membersForAll_t* membersForAllSubGroupsGet(struct trackDb *parentTdb, struct cart *cart)$/;"	f	file:
membersForAllSubGroupsWeedOutEmpties	hg/lib/hui.c	/^static membersForAll_t *membersForAllSubGroupsWeedOutEmpties(struct trackDb *parentTdb, membersForAll_t *membersForAll, struct cart *cart)$/;"	f	file:
membersForAll_t	hg/lib/hui.c	/^} membersForAll_t;$/;"	t	typeref:struct:_membersForAll	file:
membersSubGroupIx	hg/lib/hui.c	/^static int membersSubGroupIx(members_t* members, char *tag)$/;"	f	file:
members_t	hg/lib/hui.c	/^} members_t;$/;"	t	typeref:struct:_members	file:
membership	hg/inc/trackDb.h	/^    struct _membership *membership;       \/\/ hgTrackUi subtracks have individual membership info$/;"	m	struct:tdbExtras	typeref:struct:tdbExtras::_membership
membership	hg/lib/hui.c	/^    char **membership;   \/\/ Ary of Tags of subGroups that child belongs to (ie PK)$/;"	m	struct:_membership	file:
membership	hg/lib/hui.c	/^    char**membership;$/;"	m	struct:_hierarchy	file:
membershipInAllCurrentABCs	hg/lib/hui.c	/^static boolean membershipInAllCurrentABCs(membership_t *membership,membersForAll_t*membersForAll)$/;"	f	file:
membership_t	hg/lib/hui.c	/^} membership_t;$/;"	t	typeref:struct:_membership	file:
memmem	lib/cheapcgi.c	292;"	d	file:
mergeAdd	jkOwnLib/genoFind.c	/^static void mergeAdd(struct binKeeper *bk, int start, int end, struct gfSeqSource *src)$/;"	f	file:
mergeAllele	hg/lib/gpFx.c	/^static void mergeAllele(char *transcript, int variantWidth,$/;"	f	file:
mergeClusters	lib/boxClump.c	/^static void mergeClusters(struct cluster *a, struct cluster *b)$/;"	f	file:
mergeContigs	jkOwnLib/xenbig.c	/^static void mergeContigs(struct dlList *contigList, int stitchMinScore)$/;"	f	file:
mergeDoubleSofts	hg/lib/ggGraph.c	/^static void mergeDoubleSofts(struct geneGraph *gg)$/;"	f	file:
mergeHits	lib/trix.c	/^struct trixHitPos *mergeHits(struct trixHitPos *aList, struct trixHitPos *bList)$/;"	f
mergeIntoAdjacentClusters	jkOwnLib/xenbig.c	/^static boolean mergeIntoAdjacentClusters(struct dlList *clusterList, struct dlNode *contigNode)$/;"	f	file:
mergeProtoGenes	jkOwnLib/fuzzyFind.c	/^void mergeProtoGenes(struct protoGene **pList, struct protoGene *a, struct protoGene *b)$/;"	f
mergeTwo	jkOwnLib/xenbig.c	/^static struct contig *mergeTwo(struct contig *a, struct contig *b)$/;"	f	file:
mergeUCSC	hg/inc/stsInfo.h	/^    unsigned *mergeUCSC;	\/* Related merged inactive UCSC ids *\/$/;"	m	struct:stsInfo
mergeUCSC	hg/inc/stsInfo2.h	/^    unsigned *mergeUCSC;	\/* Related merged inactive UCSC ids *\/$/;"	m	struct:stsInfo2
mergeUCSCcount	hg/inc/stsInfo.h	/^    unsigned mergeUCSCcount;	\/* Number of merged inactive UCSC ids *\/$/;"	m	struct:stsInfo
mergeUCSCcount	hg/inc/stsInfo2.h	/^    unsigned mergeUCSCcount;	\/* Number of merged inactive UCSC ids *\/$/;"	m	struct:stsInfo2
mergeWithinCluster	jkOwnLib/xenbig.c	/^static void mergeWithinCluster(struct cluster *cluster)$/;"	f	file:
message	inc/errCatch.h	/^    struct dyString *message; \/* Error message if any *\/$/;"	m	struct:errCatch	typeref:struct:errCatch::dyString
metaByVar	hg/inc/metaTbl.h	/^struct metaByVar$/;"	s
metaByVarsQueryAll	hg/inc/metaTbl.h	239;"	d
metaChromGraph	hg/inc/metaChromGraph.h	/^struct metaChromGraph$/;"	s
metaChromGraphCommaIn	hg/lib/metaChromGraph.c	/^struct metaChromGraph *metaChromGraphCommaIn(char **pS, struct metaChromGraph *ret)$/;"	f
metaChromGraphCommaOut	hg/inc/metaChromGraph.h	58;"	d
metaChromGraphFree	hg/lib/metaChromGraph.c	/^void metaChromGraphFree(struct metaChromGraph **pEl)$/;"	f
metaChromGraphFreeList	hg/lib/metaChromGraph.c	/^void metaChromGraphFreeList(struct metaChromGraph **pList)$/;"	f
metaChromGraphLoad	hg/lib/metaChromGraph.c	/^struct metaChromGraph *metaChromGraphLoad(char **row)$/;"	f
metaChromGraphLoadAll	hg/lib/metaChromGraph.c	/^struct metaChromGraph *metaChromGraphLoadAll(char *fileName) $/;"	f
metaChromGraphLoadAllByChar	hg/lib/metaChromGraph.c	/^struct metaChromGraph *metaChromGraphLoadAllByChar(char *fileName, char chopper) $/;"	f
metaChromGraphLoadAllByTab	hg/inc/metaChromGraph.h	36;"	d
metaChromGraphOutput	hg/lib/metaChromGraph.c	/^void metaChromGraphOutput(struct metaChromGraph *el, FILE *f, char sep, char lastSep) $/;"	f
metaChromGraphStaticLoad	hg/lib/metaChromGraph.c	/^void metaChromGraphStaticLoad(char **row, struct metaChromGraph *ret)$/;"	f
metaChromGraphTabOut	hg/inc/metaChromGraph.h	55;"	d
metaDataAdd	lib/linefile.c	/^static void metaDataAdd(struct lineFile *lf, char *line)$/;"	f	file:
metaDataFree	lib/linefile.c	/^static void metaDataFree(struct lineFile *lf)$/;"	f	file:
metaFile	inc/linefile.h	/^    FILE *metaFile;             \/* file to write metadata to *\/$/;"	m	struct:metaOutput
metaIntervalsForChrom	lib/metaWig.c	/^struct bbiInterval *metaIntervalsForChrom(struct metaWig *mw, char *chrom, struct lm *lm)$/;"	f
metaLeafObj	hg/inc/metaTbl.h	/^struct metaLeafObj$/;"	s
metaLimbVal	hg/inc/metaTbl.h	/^struct metaLimbVal$/;"	s
metaLines	inc/linefile.h	/^    struct hash *metaLines;     \/* save lines to suppress repetition *\/$/;"	m	struct:lineFile	typeref:struct:lineFile::hash
metaObj	hg/inc/metaTbl.h	/^struct metaObj$/;"	s
metaObjType	hg/inc/metaTbl.h	/^enum metaObjType$/;"	g
metaObjsQueryAll	hg/inc/metaTbl.h	231;"	d
metaOutput	inc/linefile.h	/^    struct metaOutput *metaOutput;   \/* list of FILE handles to write metaData to *\/$/;"	m	struct:lineFile	typeref:struct:lineFile::metaOutput
metaOutput	inc/linefile.h	/^struct metaOutput$/;"	s
metaTbl	hg/inc/metaTbl.h	/^struct metaTbl$/;"	s
metaTblCommaOut	hg/inc/metaTbl.h	85;"	d
metaTblLoadAllByTab	hg/inc/metaTbl.h	63;"	d
metaTblTabOut	hg/inc/metaTbl.h	82;"	d
metaVar	hg/inc/metaTbl.h	/^struct metaVar$/;"	s
metaVarType	hg/inc/metaTbl.h	/^enum metaVarType$/;"	g
metaWig	inc/metaWig.h	/^struct metaWig$/;"	s
metaWigChromList	lib/metaWig.c	/^struct slName *metaWigChromList(struct metaWig *mw)$/;"	f
metaWigClose	lib/metaWig.c	/^void metaWigClose(struct metaWig **pMw)$/;"	f
metaWigOpen	lib/metaWig.c	/^struct metaWig *metaWigOpen(char *fileName)$/;"	f
metaWigType	inc/metaWig.h	/^enum metaWigType $/;"	g
metadataAsHtmlTable	hg/lib/hui.c	/^char *metadataAsHtmlTable(char *db,struct trackDb *tdb,boolean showLongLabel,boolean showShortLabel)$/;"	f
metadataFindValue	hg/lib/mdb.c	/^const char *metadataFindValue(struct trackDb *tdb, char *var)$/;"	f
metadataForTable	hg/lib/mdb.c	/^const struct mdbObj *metadataForTable(char *db,struct trackDb *tdb,char *table)$/;"	f
metadataForTableFromTdb	hg/lib/mdb.c	/^static struct mdbObj *metadataForTableFromTdb(struct trackDb *tdb)$/;"	f	file:
metadataLineParse	hg/lib/mdb.c	/^struct mdbObj *metadataLineParse(char *line)$/;"	f
method	hg/inc/affyPairs.h	/^    char *method;	\/* Method (not informative) *\/$/;"	m	struct:affyPairs
method	hg/inc/dgv.h	/^    char *method;	\/* Brief description of method\/platform *\/$/;"	m	struct:dgv
method	hg/inc/vegaInfo.h	/^    char *method;	\/* GTF method field *\/$/;"	m	struct:vegaInfo
method	hg/inc/vegaInfoZfish.h	/^    char *method;	\/* GTF method field *\/$/;"	m	struct:vegaInfoZfish
method	inc/apacheLog.h	/^    char *method;	\/* GET\/POST etc. *\/$/;"	m	struct:apacheAccessLog
method	inc/htmlPage.h	/^    char *method;		\/* Defaults to "GET". Not allocated here.  *\/$/;"	m	struct:htmlForm
mg	lib/vGif.c	/^    struct memGfx mg;	\/* Memory form.  This needs to be first field. *\/$/;"	m	struct:memGif	typeref:struct:memGif::memGfx	file:
mg	lib/vPng.c	/^    struct memGfx mg;	\/* Memory form.  This needs to be first field. *\/$/;"	m	struct:memPng	typeref:struct:memPng::memGfx	file:
mgAddColor	lib/memgfx.c	/^Color mgAddColor(struct memGfx *mg, unsigned char r, unsigned char g, unsigned char b)$/;"	f
mgBrezy	lib/memgfx.c	/^void mgBrezy(struct memGfx *mg, int x1, int y1, int x2, int y2, Color color,$/;"	f
mgCircle	lib/mgCircle.c	/^void mgCircle(struct memGfx *mg, int xCen, int yCen, int rad, $/;"	f
mgClearPixels	lib/memgfx.c	/^void mgClearPixels(struct memGfx *mg)$/;"	f
mgClearPixelsTrans	lib/memgfx.c	/^void mgClearPixelsTrans(struct memGfx *mg)$/;"	f
mgClipForBlit	lib/memgfx.c	/^boolean mgClipForBlit(int *w, int *h, int *sx, int *sy,$/;"	f
mgClosestColor	lib/memgfx.c	/^Color mgClosestColor(struct memGfx *mg, unsigned char r, unsigned char g, unsigned char b)$/;"	f
mgColorIxToRgb	lib/memgfx.c	/^struct rgbColor mgColorIxToRgb(struct memGfx *mg, int colorIx)$/;"	f
mgColorsFree	lib/memgfx.c	/^int mgColorsFree(struct memGfx *mg)$/;"	f
mgDrawBox	lib/memgfx.c	/^void mgDrawBox(struct memGfx *mg, int x, int y, int width, int height, Color color)$/;"	f
mgDrawBoxMultiply	lib/memgfx.c	/^void mgDrawBoxMultiply(struct memGfx *mg, int x, int y, int width, int height, Color color)$/;"	f
mgDrawBoxNormal	lib/memgfx.c	/^void mgDrawBoxNormal(struct memGfx *mg, int x, int y, int width, int height, Color color)$/;"	f
mgDrawHorizontalLine	lib/memgfx.c	/^void mgDrawHorizontalLine(struct memGfx *mg, int y1, Color color)$/;"	f
mgDrawLine	lib/memgfx.c	/^void mgDrawLine(struct memGfx *mg, int x1, int y1, int x2, int y2, Color color)$/;"	f
mgDrawPoly	lib/mgPolygon.c	/^void mgDrawPoly(struct memGfx *mg, struct gfxPoly *poly, Color color,$/;"	f
mgDrawPolyFilled	lib/mgPolygon.c	/^void mgDrawPolyFilled(struct memGfx *mg, struct gfxPoly *poly, Color color)$/;"	f
mgDrawPolyOutline	lib/mgPolygon.c	/^void mgDrawPolyOutline(struct memGfx *mg, struct gfxPoly *poly, Color color)$/;"	f
mgFillUnder	lib/memgfx.c	/^void mgFillUnder(struct memGfx *mg, int x1, int y1, int x2, int y2, $/;"	f
mgFindColor	lib/memgfx.c	/^Color mgFindColor(struct memGfx *mg, unsigned char r, unsigned char g, unsigned char b)$/;"	f
mgFixedColors	lib/fixColor.c	/^struct rgbColor mgFixedColors[9] = {$/;"	v	typeref:struct:rgbColor
mgFontCharWidth	lib/memgfx.c	/^int mgFontCharWidth(MgFont *font, char c)$/;"	f
mgFontForSize	lib/memgfx.c	/^MgFont *mgFontForSize(char *textSize)$/;"	f
mgFontForSizeAndStyle	lib/memgfx.c	/^MgFont *mgFontForSizeAndStyle(char *textSize, char *fontType)$/;"	f
mgFontLineHeight	lib/memgfx.c	/^int mgFontLineHeight(MgFont *font)$/;"	f
mgFontPixelHeight	lib/memgfx.c	/^int mgFontPixelHeight(MgFont *font)$/;"	f
mgFontSizeBackwardsCompatible	lib/memgfx.c	/^char *mgFontSizeBackwardsCompatible(char *size)$/;"	f
mgFontStringWidth	lib/memgfx.c	/^int mgFontStringWidth(MgFont *font, char *string)$/;"	f
mgFontWidth	lib/memgfx.c	/^int mgFontWidth(MgFont *font, char *chars, int charCount)$/;"	f
mgFree	lib/memgfx.c	/^void mgFree(struct memGfx **pmg)$/;"	f
mgGetDot	inc/memgfx.h	181;"	d
mgGetFontPixelHeight	lib/memgfx.c	/^int mgGetFontPixelHeight(struct memGfx *mg, MgFont *font)$/;"	f
mgGetFontStringWidth	lib/memgfx.c	/^int mgGetFontStringWidth(struct memGfx *mg, MgFont *font, char *string)$/;"	f
mgGetHint	lib/memgfx.c	/^char *mgGetHint(char *hint)$/;"	f
mgHslToRgb	lib/memgfx.c	/^struct rgbColor mgHslToRgb(struct hslColor hsl)$/;"	f
mgHsvToRgb	lib/memgfx.c	/^struct rgbColor mgHsvToRgb(struct hsvColor hsv)$/;"	f
mgLineH	lib/memgfx.c	/^void mgLineH(struct memGfx *mg, int y, int x1, int x2, Color color)$/;"	f
mgLoadGif	lib/gifread.c	/^struct memGfx *mgLoadGif(char *name)$/;"	f
mgNew	lib/memgfx.c	/^struct memGfx *mgNew(int width, int height)$/;"	f
mgPutDot	inc/memgfx.h	/^INLINE void mgPutDot(struct memGfx *mg, int x, int y,Color color)$/;"	f
mgPutSeg	lib/memgfx.c	/^void mgPutSeg(struct memGfx *mg, int x, int y, int width, Color *dots)$/;"	f
mgPutSegMaybeZeroClear	lib/memgfx.c	/^static void mgPutSegMaybeZeroClear(struct memGfx *mg, int x, int y, int width, Color *dots, boolean zeroClear)$/;"	f	file:
mgPutSegZeroClear	lib/memgfx.c	/^void mgPutSegZeroClear(struct memGfx *mg, int x, int y, int width, Color *dots)$/;"	f
mgRgbToHsl	lib/memgfx.c	/^struct hslColor mgRgbToHsl(struct rgbColor rgb)$/;"	f
mgRgbToHsv	lib/memgfx.c	/^struct hsvColor mgRgbToHsv(struct rgbColor rgb) $/;"	f
mgRgbTransformHsl	lib/memgfx.c	/^struct rgbColor mgRgbTransformHsl(struct rgbColor in, double h, double s, double l)$/;"	f
mgRgbTransformHsv	lib/memgfx.c	/^struct rgbColor mgRgbTransformHsv(struct rgbColor in, double h, double s, double v)$/;"	f
mgRotate90	lib/memgfx.c	/^struct memGfx *mgRotate90(struct memGfx *in)$/;"	f
mgSaveGif	lib/gifwrite.c	/^void mgSaveGif(struct memGfx *screen, char *name, boolean useTransparency)$/;"	f
mgSavePng	lib/pngwrite.c	/^void mgSavePng(struct memGfx *mg, char *filename, boolean useTransparency)$/;"	f
mgSaveToGif	lib/gifwrite.c	/^boolean mgSaveToGif(FILE *gif_file, struct memGfx *screen, boolean useTransparency)$/;"	f
mgSaveToPng	lib/pngwrite.c	/^boolean mgSaveToPng(FILE *png_file, struct memGfx *mg, boolean useTransparency)$/;"	f
mgSetClip	lib/memgfx.c	/^void mgSetClip(struct memGfx *mg, int x, int y, int width, int height)$/;"	f
mgSetDefaultColorMap	lib/memgfx.c	/^static void mgSetDefaultColorMap(struct memGfx *mg)$/;"	f	file:
mgSetHint	lib/memgfx.c	/^void mgSetHint(char *hint)$/;"	f
mgSetWriteMode	lib/memgfx.c	/^void mgSetWriteMode(struct memGfx *mg, unsigned int writeMode)$/;"	f
mgSlowDot	lib/memgfx.c	/^void mgSlowDot(struct memGfx *mg, int x, int y, int colorIx)$/;"	f
mgSlowGetDot	lib/memgfx.c	/^int mgSlowGetDot(struct memGfx *mg, int x, int y)$/;"	f
mgText	lib/memgfx.c	/^void mgText(struct memGfx *mg, int x, int y, Color color, $/;"	f
mgTextBlit	lib/memgfx.c	/^void mgTextBlit(int width, int height, int bitX, int bitY,$/;"	f
mgTextBlitSolid	lib/memgfx.c	/^void mgTextBlitSolid(int width, int height, int bitX, int bitY,$/;"	f
mgTextCentered	lib/memgfx.c	/^void mgTextCentered(struct memGfx *mg, int x, int y, int width, int height, $/;"	f
mgTextRight	lib/memgfx.c	/^void mgTextRight(struct memGfx *mg, int x, int y, int width, int height, $/;"	f
mgUnclip	lib/memgfx.c	/^void mgUnclip(struct memGfx *mg)$/;"	f
mgVerticalSmear	lib/memgfx.c	/^void mgVerticalSmear(struct memGfx *mg,$/;"	f
mgc	hg/inc/pseudoGeneLink.h	/^    char *mgc;	\/* Name of closest mgc to gene *\/$/;"	m	struct:pseudoGeneLink
mgc	hg/inc/retroMrnaInfo.h	/^    char *mgc;	\/* Name of closest mgc to gene col44 *\/$/;"	m	struct:retroMrnaInfo
mgc	hg/inc/ucscRetroInfo.h	/^    char *mgc;	\/* Name of closest mgc to gene col42 *\/$/;"	m	struct:ucscRetroInfo
mgdAvg	hg/inc/recombRateMouse.h	/^    float mgdAvg;	\/* Calculated MGD genetic map recombination rate *\/$/;"	m	struct:recombRateMouse
mgdId	hg/inc/hgnc.h	/^    char *mgdId;	\/* MGD ID *\/$/;"	m	struct:hgnc
mgiChr	hg/inc/stsInfoMouseNew.h	/^    char *mgiChr;	\/* Chromosome in Genetic map *\/$/;"	m	struct:stsInfoMouseNew
mgiChrom	hg/inc/stsMapMouseNew.h	/^    char *mgiChrom;	\/* Chromosome (no chr) from SHRSPxBN geneticmap or 0 if none *\/$/;"	m	struct:stsMapMouseNew
mgiGeneticPos	hg/inc/stsInfoMouseNew.h	/^    float mgiGeneticPos;	\/* Position in Genetic map *\/$/;"	m	struct:stsInfoMouseNew
mgiID	hg/inc/jaxQTL.h	/^    char *mgiID;	\/* MGI ID *\/$/;"	m	struct:jaxQTL
mgiID	hg/inc/jaxQTL2.h	/^    char *mgiID;	\/* MGI ID *\/$/;"	m	struct:jaxQTL2
mgiID	hg/inc/jaxQTL3.h	/^    char *mgiID;	\/* MGI ID *\/$/;"	m	struct:jaxQTL3
mgiId	hg/inc/jaxOrtholog.h	/^    char *mgiId;	\/* Mouse database id *\/$/;"	m	struct:jaxOrtholog
mgiMapped	hg/inc/hgnc.h	/^    char *mgiMapped;	\/* MGD ID (mapped data) *\/$/;"	m	struct:hgnc
mgiName	hg/inc/stsInfoMouseNew.h	/^    char *mgiName;	\/* MGI map *\/$/;"	m	struct:stsInfoMouseNew
mgiPos	hg/inc/stsMapMouseNew.h	/^    float mgiPos;	\/* Position on SHRSPxBN genetic map *\/$/;"	m	struct:stsMapMouseNew
mhStack	lib/memalloc.c	/^static struct memHandler *mhStack = &defaultMemHandler;$/;"	v	typeref:struct:memHandler	file:
microarrayFactory	hg/lib/customFactory.c	/^static struct customFactory microarrayFactory =$/;"	v	typeref:struct:customFactory	file:
microarrayGroups	hg/inc/microarray.h	/^struct microarrayGroups$/;"	s
microarrayGroupsFree	hg/lib/microarray.c	/^void microarrayGroupsFree(struct microarrayGroups **pGroups)$/;"	f
microarrayLoader	hg/lib/customFactory.c	/^static struct customTrack *microarrayLoader(struct customFactory *fac,$/;"	f	file:
microarrayRecognizer	hg/lib/customFactory.c	/^static boolean microarrayRecognizer(struct customFactory *fac,$/;"	f	file:
mid	hg/inc/altGraphX.h	/^    int mid;                    \/* Midpoint for splice junctions. *\/$/;"	m	struct:spliceEdge
mid	inc/snof.h	/^    char *mid;$/;"	m	struct:snof
midLabel	hg/lib/genoLay.c	/^static void midLabel(struct hvGfx *hvg, struct genoLay *gl,$/;"	f	file:
midPsl	hg/inc/coordConv.h	/^    struct psl *midPsl,*upPsl,*downPsl; \/** alignments for each of the dnaSeqs *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::psl
midPsl	hg/lib/coordConv.c	/^    struct psl *midPsl,*upPsl,*downPsl;$/;"	m	struct:possibleCoord	typeref:struct:possibleCoord::psl	file:
midScore	inc/cda.h	/^    UBYTE midScore;             \/* 0-255  255 is perfect. *\/$/;"	m	struct:cdaBlock
midSeq	hg/inc/coordConv.h	/^    struct dnaSeq *midSeq,*upSeq,*downSeq; \/** 3 in order from 5' to 3' *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::dnaSeq
midStart	hg/inc/coordConv.h	/^    unsigned midStart,upStart,downStart; \/** starting position of dnaSeqs in old chrom *\/$/;"	m	struct:coordConvRep
milliBad	hg/inc/pseudoGeneLink.h	/^    unsigned milliBad;	\/* milliBad score, pseudogene aligned to genome *\/$/;"	m	struct:pseudoGeneLink
milliBad	hg/inc/retroMrnaInfo.h	/^    unsigned milliBad;	\/* milliBad score, pseudogene aligned to genome col35 *\/$/;"	m	struct:retroMrnaInfo
milliBad	hg/inc/ucscRetroInfo.h	/^    unsigned milliBad;	\/* milliBad score, pseudogene aligned to genome col33 *\/$/;"	m	struct:ucscRetroInfo
milliDel	hg/inc/rmskOut.h	/^    unsigned milliDel;	\/* Bases deleted in parts per thousand *\/$/;"	m	struct:rmskOut
milliDiv	hg/inc/rmskOut.h	/^    unsigned milliDiv;	\/* Base mismatches in parts per thousand *\/$/;"	m	struct:rmskOut
milliIns	hg/inc/rmskOut.h	/^    unsigned milliIns;	\/* Bases inserted in parts per thousand *\/$/;"	m	struct:rmskOut
milliMatchScore	jkOwnLib/xenbig.c	/^static int milliMatchScore(struct contig *contig)$/;"	f	file:
milliScore	hg/inc/ggMrnaAli.h	/^    short milliScore;	\/* Score 0-1000  *\/$/;"	m	struct:ggMrnaAli
milliScore	hg/inc/wabAli.h	/^    unsigned milliScore;	\/* Base identity in parts per thousand. *\/$/;"	m	struct:wabAli
milliScore	inc/cda.h	/^    short milliScore;               \/* Score 0-1000 *\/$/;"	m	struct:cdaAli
milliScore	inc/xa.h	/^    int milliScore;$/;"	m	struct:xaAli
milliTime	inc/qa.h	/^    int milliTime;	\/* Time page fetch took. *\/$/;"	m	struct:qaStatus
milliTotal	inc/qa.h	/^    long milliTotal;	\/* Time tests took. *\/$/;"	m	struct:qaStatistics
mimeBuf	inc/mime.h	/^struct mimeBuf$/;"	s
mimePart	inc/mime.h	/^struct mimePart$/;"	s
min	inc/annoFilter.h	/^    union aNumber min;		\/\/ Lowest valid threshold value$/;"	m	struct:annoFilter	typeref:union:annoFilter::aNumber
min	inc/common.h	1177;"	d
min3	lib/memgfx.c	39;"	d	file:
minAlFreq	hg/inc/genotypeFreqs.h	/^    float minAlFreq;	\/* maf		0 *\/$/;"	m	struct:genotypeFreqs
minAllele	hg/inc/alleleFreqs.h	/^    char minAllele;	\/*  minor_allele		T *\/$/;"	m	struct:alleleFreqs
minBlocks	hg/inc/liftOverChain.h	/^    float minBlocks;	\/* Min ratio of alignment blocks\/exons that must map. *\/$/;"	m	struct:liftOverChain
minChainT	hg/inc/liftOverChain.h	/^    unsigned minChainT;	\/* Minimum chain size in target. *\/$/;"	m	struct:liftOverChain
minCheck	hg/inc/joiner.h	/^    double minCheck;		\/* Minimum ratio that must hit primary key *\/$/;"	m	struct:joinerField
minChromSize	hg/inc/minChromSize.h	/^struct minChromSize$/;"	s
minChromSizeFromBeds	hg/lib/minChromSize.c	/^struct hash *minChromSizeFromBeds(struct bed *bedList)$/;"	f
minChromSizeKeeperHash	hg/lib/minChromSize.c	/^struct hash *minChromSizeKeeperHash(struct hash *sizeHash)$/;"	f
minColCount	inc/peakCluster.h	/^    int minColCount;		\/* Minimum number of columns. *\/$/;"	m	struct:peakSource
minCount	hg/inc/alleleFreqs.h	/^    int minCount;	\/*  minor_allele_count	0 *\/$/;"	m	struct:alleleFreqs
minCount	hg/inc/genotypeFreqs.h	/^    int minCount;	\/* minorhom-count	0 *\/$/;"	m	struct:genotypeFreqs
minDist	lib/dgRange.c	/^   int minDist, maxDist;$/;"	m	struct:bfRange	file:
minFreq	hg/inc/affy120KDetails.h	/^    float minFreq;	\/* The minimum allele frequency *\/$/;"	m	struct:affy120KDetails
minFreq	hg/inc/affyGenoDetails.h	/^    float minFreq;	\/* The minimum allele frequency *\/$/;"	m	struct:affyGenoDetails
minFreq	hg/inc/alleleFreqs.h	/^    float minFreq;	\/*  minor_allele_freq	0 *\/$/;"	m	struct:alleleFreqs
minFreq	hg/inc/genotypeFreqs.h	/^    float minFreq;	\/* minorhom-freq	0 *\/$/;"	m	struct:genotypeFreqs
minFreq	hg/inc/hapmapPhaseIIISummary.h	/^    float minFreq;	\/* Minimum minor allele frequency across all populations *\/$/;"	m	struct:hapmapPhaseIIISummary
minGeneInfo	hg/inc/minGeneInfo.h	/^struct minGeneInfo$/;"	s
minGeneInfoCommaIn	hg/lib/minGeneInfo.c	/^struct minGeneInfo *minGeneInfoCommaIn(char **pS, struct minGeneInfo *ret)$/;"	f
minGeneInfoCommaOut	hg/inc/minGeneInfo.h	62;"	d
minGeneInfoFree	hg/lib/minGeneInfo.c	/^void minGeneInfoFree(struct minGeneInfo **pEl)$/;"	f
minGeneInfoFreeList	hg/lib/minGeneInfo.c	/^void minGeneInfoFreeList(struct minGeneInfo **pList)$/;"	f
minGeneInfoLoad	hg/lib/minGeneInfo.c	/^struct minGeneInfo *minGeneInfoLoad(char **row)$/;"	f
minGeneInfoLoadAll	hg/lib/minGeneInfo.c	/^struct minGeneInfo *minGeneInfoLoadAll(char *fileName) $/;"	f
minGeneInfoLoadAllByChar	hg/lib/minGeneInfo.c	/^struct minGeneInfo *minGeneInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
minGeneInfoLoadAllByTab	hg/inc/minGeneInfo.h	40;"	d
minGeneInfoOutput	hg/lib/minGeneInfo.c	/^void minGeneInfoOutput(struct minGeneInfo *el, FILE *f, char sep, char lastSep) $/;"	f
minGeneInfoStaticLoad	hg/lib/minGeneInfo.c	/^void minGeneInfoStaticLoad(char **row, struct minGeneInfo *ret)$/;"	f
minGeneInfoTabOut	hg/inc/minGeneInfo.h	59;"	d
minGood	inc/genoFind.h	/^    int minGood;		\/* Minimum sequence identity in thousandths. *\/$/;"	m	struct:gfOutput
minGt	hg/inc/genotypeFreqs.h	/^    char *minGt;	\/* minorhom-gt	T\/T *\/$/;"	m	struct:genotypeFreqs
minIdentity	jkOwnLib/gfOut.c	/^    double minIdentity; \/* Just used for blast. *\/$/;"	m	struct:axtData	file:
minIt	lib/rbTree.c	/^static void *minIt, *maxIt;$/;"	v	file:
minMatch	hg/inc/liftOverChain.h	/^    float minMatch;	\/* Minimum ratio of bases that must remap. *\/$/;"	m	struct:liftOverChain
minMatch	inc/genoFind.h	/^    int minMatch;                        \/* Minimum number of tile hits needed$/;"	m	struct:genoFind
minMatch	jkOwnLib/patSpace.c	/^    int minMatch;                        \/* Minimum number of tile hits needed$/;"	m	struct:patSpace	file:
minPixels	hg/inc/chromGraph.h	/^    int minPixels;		\/* Minimum allowed pixels. *\/$/;"	m	struct:chromGraphSettings
minPos	inc/binRange.h	/^    int minPos;		\/* Minimum position to bin. *\/$/;"	m	struct:binKeeper
minSize	hg/inc/minChromSize.h	/^    int minSize;	\/* Minimum size of chromosome. *\/$/;"	m	struct:minChromSize
minSizeQ	hg/inc/liftOverChain.h	/^    unsigned minSizeQ;	\/* Minimum chain size in query. *\/$/;"	m	struct:liftOverChain
minSpan	hg/lib/wiggleUtils.c	/^int minSpan(struct sqlConnection *conn, char *table, char *chrom,$/;"	f
minVal	hg/inc/chromGraph.h	/^    double minVal, maxVal;	\/* Max\/min data range *\/$/;"	m	struct:chromGraphSettings
minVal	hg/inc/chromGraph.h	/^    double minVal, maxVal;	\/* Min\/max values in file *\/$/;"	m	struct:chromGraphBin
minVal	hg/inc/metaChromGraph.h	/^    double minVal;	\/* Minimum value observed *\/$/;"	m	struct:metaChromGraph
minVal	hg/lib/chromGraphFactory.c	/^    double minVal,maxVal;	\/* Min\/mas values in graph *\/$/;"	m	struct:labeledFile	file:
minVal	inc/bbiFile.h	/^    double minVal;		\/* Minimum value of items *\/$/;"	m	struct:bbiSummaryElement
minVal	inc/bbiFile.h	/^    float minVal;		\/* Minimum value of items *\/$/;"	m	struct:bbiSummary
minVal	inc/bbiFile.h	/^    float minVal;		\/* Minimum value of items *\/$/;"	m	struct:bbiSummaryOnDisk
minorAlleleFreq	hg/inc/hapmapAlleleFreq.h	/^    float minorAlleleFreq;	\/* Smaller of the 2 frequencies (between 0.0 and 0.5) *\/$/;"	m	struct:hapmapAlleleFreq
minorVersion	inc/itsa.h	/^    bits16 minorVersion; \/* This version changes whenever a feature is added. *\/$/;"	m	struct:itsaFileHeader
minorVersion	inc/splix.h	/^    bits16 minorVersion; \/* This version changes whenever a feature is added. *\/$/;"	m	struct:splixFileHeader
minorVersion	inc/sufa.h	/^    bits16 minorVersion; \/* This version changes whenever a feature is added. *\/$/;"	m	struct:sufaFileHeader
minorVersion	inc/sufx.h	/^    bits16 minorVersion; \/* This version changes whenever a feature is added. *\/$/;"	m	struct:sufxFileHeader
minorVersion	inc/vcf.h	/^    int minorVersion;		\/\/ 0, 1 etc.$/;"	m	struct:vcfFile
minusMinus	hg/inc/polyGenotype.h	/^    int minusMinus;	\/* homozygous allele count *\/$/;"	m	struct:polyGenotype
misMatch	hg/inc/pslWScore.h	/^    unsigned misMatch;	\/* Number of bases that don't match *\/$/;"	m	struct:pslWScore
misMatch	inc/psl.h	/^    unsigned misMatch;	\/* Number of bases that don't match *\/$/;"	m	struct:psl
misMatch	inc/xAli.h	/^    unsigned misMatch;	\/* Number of bases that don't match *\/$/;"	m	struct:xAli
misMatchCount	hg/inc/mrnaMisMatch.h	/^    int misMatchCount;	\/* count of misMatches  *\/$/;"	m	struct:mrnaMisMatch
misMatches	hg/inc/pslWQueryID.h	/^    unsigned misMatches;	\/* Number of bases that don't match *\/$/;"	m	struct:pslWQueryID
miscDbs	hg/inc/hgnc.h	/^    char *miscDbs;	\/* Misc Database Links *\/$/;"	m	struct:hgnc
miscIds	hg/inc/hgnc.h	/^    char *miscIds;	\/* Misc Database IDs *\/$/;"	m	struct:hgnc
mismatch	hg/inc/blastTab.h	/^    unsigned mismatch;	\/* Number of mismatches *\/$/;"	m	struct:blastTab
mismatchB	hg/inc/genomicDups.h	/^    unsigned mismatchB;	\/* aligned bases that do not match *\/$/;"	m	struct:genomicDups
mismatchB	hg/inc/genomicSuperDups.h	/^    unsigned mismatchB;	\/* aligned bases that do not match *\/$/;"	m	struct:genomicSuperDups
missense	hg/inc/soterm.h	/^    missense=1583,$/;"	e	enum:__anon11
missing	hg/inc/cdsOrtho.h	/^    int missing;	\/* Number of bases missing (non-aligning) *\/$/;"	m	struct:cdsOrtho
missingData	inc/vcf.h	/^    bool *missingData;		\/\/ Array of flags for missing data values ("." instead of number)$/;"	m	struct:vcfInfoElement
mitoCode	lib/dnautil.c	/^    AA mitoCode;	\/* Upper case. Vertebrate Mitochondrial translations *\/$/;"	m	struct:codonTable	file:
mitoGeneticCode	hg/inc/taxonNode.h	/^    unsigned mitoGeneticCode;	\/* genetic code of mitochondria see ncbiGencode *\/$/;"	m	struct:taxonNode
mixedCaseName	inc/dtdParse.h	/^    char *mixedCaseName;	\/* Name converted from EL_NAME or el-name to elName. *\/$/;"	m	struct:dtdAttribute
mixedCaseName	inc/dtdParse.h	/^    char *mixedCaseName;	\/* Name converted from EL_NAME or el-name to elName. *\/$/;"	m	struct:dtdElement
mixedCaseName	lib/dtdParse.c	/^static char *mixedCaseName(char *prefix, char *orig)$/;"	f	file:
mkFromGroupedGxf	hg/lib/genePred.c	/^static struct genePred *mkFromGroupedGxf(struct gffFile *gff, struct gffGroup *group, char *name,$/;"	f	file:
mkPairPartnerSymbols	lib/rnautil.c	/^void mkPairPartnerSymbols(int *pairList, char *pairSymbols, int size)$/;"	f
mkdirTrashDirectory	lib/portimpl.c	/^void mkdirTrashDirectory(char *prefix)$/;"	f
mktimeFromUtc	lib/common.c	/^time_t mktimeFromUtc (struct tm *t)$/;"	f
mm	hg/inc/affyPairs.h	/^    float mm;	\/* MM, the mismatch-complement probe intensity. *\/$/;"	m	struct:affyPairs
mmp	hg/inc/affyPairs.h	/^    float mmp;	\/* MM.p, the number of pixel used in the mismatch-complement feature.  *\/$/;"	m	struct:affyPairs
mms	hg/inc/affyPairs.h	/^    float mms;	\/* MM.s, the standard deviation of the pixels in the mismatch-complement feature. *\/$/;"	m	struct:affyPairs
modelList	inc/hmmPfamParse.h	/^    struct hpfModel *modelList;  \/* All models that hit query *\/$/;"	m	struct:hpfResult	typeref:struct:hpfResult::hpfModel
mol	hg/inc/refSeqStatus.h	/^    enum refSeqStatusMol mol;	\/* molecule type *\/$/;"	m	struct:refSeqStatus	typeref:enum:refSeqStatus::refSeqStatusMol
molType	hg/inc/snp.h	/^    char *molType;	\/* Sample type from exemplar ss *\/$/;"	m	struct:snp
molType	hg/inc/snp125.h	/^    char *molType;	\/* Sample type from exemplar ss *\/$/;"	m	struct:snp125
molType	hg/inc/snp125.h	/^    char *molType;	\/* Sample type from exemplar ss *\/$/;"	m	struct:snp125Extended
molType	hg/inc/snp132Ext.h	/^    char *molType;	\/* Sample type from exemplar submitted SNPs (ss) *\/$/;"	m	struct:snp132Ext
molType	hg/inc/snpFasta.h	/^    char *molType;	\/* Sample type from exemplar ss *\/$/;"	m	struct:snpFasta
mommy	inc/pairHmm.h	/^    UBYTE mommy; \/* Unlike a parent, you can only have one mommy! *\/$/;"	m	struct:phmmMommy
monitorEnter	hg/lib/jksql.c	/^static void monitorEnter(void)$/;"	f	file:
monitorEnterTime	hg/lib/jksql.c	/^static long monitorEnterTime = 0;           \/* time current tasked started *\/$/;"	v	file:
monitorFlags	hg/lib/jksql.c	/^static unsigned monitorFlags = 0;           \/* flags indicating what is traced *\/$/;"	v	file:
monitorHandlerSet	hg/lib/jksql.c	/^static boolean monitorHandlerSet = FALSE;   \/* is exit handler installed? *\/$/;"	v	file:
monitorInit	hg/lib/jksql.c	/^static void monitorInit(void)$/;"	f	file:
monitorInited	hg/lib/jksql.c	/^static unsigned monitorInited = FALSE;      \/* initialized yet? *\/$/;"	v	file:
monitorLeave	hg/lib/jksql.c	/^static long monitorLeave(void)$/;"	f	file:
monitorPrint	hg/lib/jksql.c	/^static void monitorPrint(struct sqlConnection *sc, char *name,$/;"	f	file:
monitorPrintInfo	hg/lib/jksql.c	/^static void monitorPrintInfo(struct sqlConnection *sc, char *name)$/;"	f	file:
monitorPrintQuery	hg/lib/jksql.c	/^static void monitorPrintQuery(struct sqlConnection *sc, char *query)$/;"	f	file:
monitorPrintTime	hg/lib/jksql.c	/^static void monitorPrintTime(void)$/;"	f	file:
monomorphicInPop	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned char monomorphicInPop[11];	\/* Monomorphic in each of the 11 Phase III populations? *\/$/;"	m	struct:hapmapPhaseIIISummary
more	inc/snof.h	/^    char *more;$/;"	m	struct:snof
moreMimeBuf	lib/mime.c	/^static void moreMimeBuf(struct mimeBuf *b)$/;"	f	file:
motherString	inc/wormdna.h	/^    char *motherString;         \/* Holds memory for other strings. *\/$/;"	m	struct:wormCdnaInfo
mouseBand	hg/inc/jaxOrtholog.h	/^    char *mouseBand;	\/* Mouse chromosome band if any *\/$/;"	m	struct:jaxOrtholog
mouseChr	hg/inc/jaxOrtholog.h	/^    char *mouseChr;	\/* Mouse chromosome *\/$/;"	m	struct:jaxOrtholog
mouseChrom	hg/inc/synteny100000.h	/^    char *mouseChrom;	\/* Mouse Chromosome *\/$/;"	m	struct:synteny100000
mouseCm	hg/inc/jaxOrtholog.h	/^    char *mouseCm;	\/* Mouse genetic map positionin centimorgans *\/$/;"	m	struct:jaxOrtholog
mouseEnd	hg/inc/mouseSynWhd.h	/^    unsigned mouseEnd;	\/* End position in mouse chromosome *\/$/;"	m	struct:mouseSynWhd
mouseOrtho	hg/inc/mouseOrtho.h	/^struct mouseOrtho$/;"	s
mouseOrthoCommaIn	hg/lib/mouseOrtho.c	/^struct mouseOrtho *mouseOrthoCommaIn(char **pS, struct mouseOrtho *ret)$/;"	f
mouseOrthoCommaOut	hg/inc/mouseOrtho.h	57;"	d
mouseOrthoFree	hg/lib/mouseOrtho.c	/^void mouseOrthoFree(struct mouseOrtho **pEl)$/;"	f
mouseOrthoFreeList	hg/lib/mouseOrtho.c	/^void mouseOrthoFreeList(struct mouseOrtho **pList)$/;"	f
mouseOrthoLoad	hg/lib/mouseOrtho.c	/^struct mouseOrtho *mouseOrthoLoad(char **row)$/;"	f
mouseOrthoLoadAll	hg/lib/mouseOrtho.c	/^struct mouseOrtho *mouseOrthoLoadAll(char *fileName) $/;"	f
mouseOrthoLoadWhere	hg/lib/mouseOrtho.c	/^struct mouseOrtho *mouseOrthoLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
mouseOrthoOutput	hg/lib/mouseOrtho.c	/^void mouseOrthoOutput(struct mouseOrtho *el, FILE *f, char sep, char lastSep) $/;"	f
mouseOrthoStaticLoad	hg/lib/mouseOrtho.c	/^void mouseOrthoStaticLoad(char **row, struct mouseOrtho *ret)$/;"	f
mouseOrthoTabOut	hg/inc/mouseOrtho.h	54;"	d
mouseStart	hg/inc/mouseSynWhd.h	/^    unsigned mouseStart;	\/* Start position in mouse chromosome *\/$/;"	m	struct:mouseSynWhd
mouseSymbol	hg/inc/jaxOrtholog.h	/^    char *mouseSymbol;	\/* Mouse human symbol *\/$/;"	m	struct:jaxOrtholog
mouseSyn	hg/inc/mouseSyn.h	/^struct mouseSyn$/;"	s
mouseSynCommaIn	hg/lib/mouseSyn.c	/^struct mouseSyn *mouseSynCommaIn(char **pS, struct mouseSyn *ret)$/;"	f
mouseSynCommaOut	hg/inc/mouseSyn.h	45;"	d
mouseSynFree	hg/lib/mouseSyn.c	/^void mouseSynFree(struct mouseSyn **pEl)$/;"	f
mouseSynFreeList	hg/lib/mouseSyn.c	/^void mouseSynFreeList(struct mouseSyn **pList)$/;"	f
mouseSynLoad	hg/lib/mouseSyn.c	/^struct mouseSyn *mouseSynLoad(char **row)$/;"	f
mouseSynOutput	hg/lib/mouseSyn.c	/^void mouseSynOutput(struct mouseSyn *el, FILE *f, char sep, char lastSep) $/;"	f
mouseSynStaticLoad	hg/lib/mouseSyn.c	/^void mouseSynStaticLoad(char **row, struct mouseSyn *ret)$/;"	f
mouseSynTabOut	hg/inc/mouseSyn.h	42;"	d
mouseSynWhd	hg/inc/mouseSynWhd.h	/^struct mouseSynWhd$/;"	s
mouseSynWhdCommaIn	hg/lib/mouseSynWhd.c	/^struct mouseSynWhd *mouseSynWhdCommaIn(char **pS, struct mouseSynWhd *ret)$/;"	f
mouseSynWhdCommaOut	hg/inc/mouseSynWhd.h	58;"	d
mouseSynWhdFree	hg/lib/mouseSynWhd.c	/^void mouseSynWhdFree(struct mouseSynWhd **pEl)$/;"	f
mouseSynWhdFreeList	hg/lib/mouseSynWhd.c	/^void mouseSynWhdFreeList(struct mouseSynWhd **pList)$/;"	f
mouseSynWhdLoad	hg/lib/mouseSynWhd.c	/^struct mouseSynWhd *mouseSynWhdLoad(char **row)$/;"	f
mouseSynWhdLoadAll	hg/lib/mouseSynWhd.c	/^struct mouseSynWhd *mouseSynWhdLoadAll(char *fileName) $/;"	f
mouseSynWhdLoadWhere	hg/lib/mouseSynWhd.c	/^struct mouseSynWhd *mouseSynWhdLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
mouseSynWhdOutput	hg/lib/mouseSynWhd.c	/^void mouseSynWhdOutput(struct mouseSynWhd *el, FILE *f, char sep, char lastSep) $/;"	f
mouseSynWhdStaticLoad	hg/lib/mouseSynWhd.c	/^void mouseSynWhdStaticLoad(char **row, struct mouseSynWhd *ret)$/;"	f
mouseSynWhdTabOut	hg/inc/mouseSynWhd.h	55;"	d
moveEvidenceIfUnique	hg/lib/ggGraph.c	/^void moveEvidenceIfUnique(struct ggEvidence **currList, struct ggEvidence **newList)$/;"	f
mpLeft	jkOwnLib/bandExt.c	31;"	d	file:
mpMask	jkOwnLib/bandExt.c	32;"	d	file:
mpMatch	jkOwnLib/bandExt.c	29;"	d	file:
mpUp	jkOwnLib/bandExt.c	30;"	d	file:
mr	hg/inc/ispyTables.h	/^struct mr$/;"	s
mrCommaIn	hg/lib/ispyTables.c	/^struct mr *mrCommaIn(char **pS, struct mr *ret)$/;"	f
mrCommaOut	hg/inc/ispyTables.h	684;"	d
mrFree	hg/lib/ispyTables.c	/^void mrFree(struct mr **pEl)$/;"	f
mrFreeList	hg/lib/ispyTables.c	/^void mrFreeList(struct mr **pList)$/;"	f
mrLoadAll	hg/lib/ispyTables.c	/^struct mr *mrLoadAll(char *fileName) $/;"	f
mrLoadAllByChar	hg/lib/ispyTables.c	/^struct mr *mrLoadAllByChar(char *fileName, char chopper) $/;"	f
mrLoadAllByTab	hg/inc/ispyTables.h	637;"	d
mrLoadByQuery	hg/lib/ispyTables.c	/^struct mr *mrLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
mrLoadWithNull	hg/lib/ispyTables.c	/^struct mr *mrLoadWithNull(char **row)$/;"	f
mrOutput	hg/lib/ispyTables.c	/^void mrOutput(struct mr *el, FILE *f, char sep, char lastSep) $/;"	f
mrSaveToDb	hg/lib/ispyTables.c	/^void mrSaveToDb(struct sqlConnection *conn, struct mr *el, char *tableName, int updateSize)$/;"	f
mrSaveToDbEscaped	hg/lib/ispyTables.c	/^void mrSaveToDbEscaped(struct sqlConnection *conn, struct mr *el, char *tableName, int updateSize)$/;"	f
mrStaticLoadWithNull	hg/lib/ispyTables.c	/^void mrStaticLoadWithNull(char **row, struct mr *ret)$/;"	f
mrTabOut	hg/inc/ispyTables.h	681;"	d
mrat	hg/inc/stanMad.h	/^    float mrat;	\/* unknown *\/$/;"	m	struct:stanMad
mrnaAcc	hg/inc/HInv.h	/^    char *mrnaAcc;	\/* Genbank mRNA accession *\/$/;"	m	struct:HInv
mrnaAcc	hg/inc/ccdsInfo.h	/^    char mrnaAcc[19];	\/* mRNA accession (NCBI or Hinxton) *\/$/;"	m	struct:ccdsInfo
mrnaAcc	hg/inc/geneBands.h	/^    char *mrnaAcc;	\/* RefSeq mrna accession *\/$/;"	m	struct:geneBands
mrnaAcc	hg/inc/refLink.h	/^    char *mrnaAcc;	\/* mRNA accession *\/$/;"	m	struct:refLink
mrnaAcc	hg/inc/refSeqStatus.h	/^    char *mrnaAcc;	\/* RefSeq gene accession name *\/$/;"	m	struct:refSeqStatus
mrnaAli	inc/maDbRep.h	/^struct mrnaAli$/;"	s
mrnaAliCommaOut	inc/maDbRep.h	58;"	d
mrnaAliTabOut	inc/maDbRep.h	55;"	d
mrnaAligns	hg/lib/hgFind.c	/^static boolean mrnaAligns(struct sqlConnection *conn, char *table, char *acc)$/;"	f	file:
mrnaBase	hg/inc/mrnaMisMatch.h	/^    char mrnaBase;	\/* base in mrna *\/$/;"	m	struct:mrnaMisMatch
mrnaCfgUi	hg/lib/hui.c	/^void mrnaCfgUi(struct cart *cart, struct trackDb *tdb, char *prefix, char *title, boolean boxed)$/;"	f
mrnaClone	hg/inc/estPair.h	/^    char *mrnaClone;	\/* Mrna clone name *\/$/;"	m	struct:estPair
mrnaEnd	hg/inc/gbMiscDiff.h	/^    int mrnaEnd;	\/* end within mRNA *\/$/;"	m	struct:gbMiscDiff
mrnaFilter	hg/inc/hui.h	/^struct mrnaFilter$/;"	s
mrnaHtmlEnd	hg/lib/hgFind.c	/^static void mrnaHtmlEnd(struct hgPosTable *table, FILE *f)$/;"	f	file:
mrnaHtmlOnePos	hg/lib/hgFind.c	/^static void mrnaHtmlOnePos(struct hgPosTable *table, struct hgPos *pos, FILE *f)$/;"	f	file:
mrnaHtmlStart	hg/lib/hgFind.c	/^static void mrnaHtmlStart(struct hgPosTable *table, FILE *f)$/;"	f	file:
mrnaIds	hg/inc/altGraphX.h	/^    int *mrnaIds;	\/* ids of mrna evidence, indexes into altGraphx->mrnaRefs *\/$/;"	m	struct:evidence
mrnaInfo	hg/lib/hgFind.c	/^static boolean mrnaInfo(char *acc, struct sqlConnection *conn, $/;"	f	file:
mrnaKeysHtmlOnePos	hg/lib/hgFind.c	/^static void mrnaKeysHtmlOnePos(struct hgPosTable *table, struct hgPos *pos,$/;"	f	file:
mrnaLabels	hg/lib/hgFind.c	/^static char *mrnaLabels[] = { "mRNAs", "Other mRNAs", NULL };$/;"	v	file:
mrnaLibs	hg/inc/altGraphX.h	/^    int *mrnaLibs;	\/* Ids of libraries that mrnas come from, indexes into library table *\/$/;"	m	struct:altGraphX
mrnaLibs	hg/inc/geneGraph.h	/^    int *mrnaLibs;                       \/* libraries from which mrnas originated, 0 if unknown, Indexes into library table *\/$/;"	m	struct:geneGraph
mrnaList	hg/inc/geneGraph.h	/^    struct ggAliInfo *mrnaList;             \/* List of compact cDNA alignments. *\/$/;"	m	struct:ggMrnaCluster	typeref:struct:ggMrnaCluster::ggAliInfo
mrnaLoc	hg/inc/mrnaMisMatch.h	/^    int mrnaLoc;	\/* location of mismatch in mrna *\/$/;"	m	struct:mrnaMisMatch
mrnaMisMatch	hg/inc/mrnaMisMatch.h	/^struct mrnaMisMatch$/;"	s
mrnaMisMatchCommaIn	hg/lib/mrnaMisMatch.c	/^struct mrnaMisMatch *mrnaMisMatchCommaIn(char **pS, struct mrnaMisMatch *ret)$/;"	f
mrnaMisMatchCommaOut	hg/inc/mrnaMisMatch.h	61;"	d
mrnaMisMatchFree	hg/lib/mrnaMisMatch.c	/^void mrnaMisMatchFree(struct mrnaMisMatch **pEl)$/;"	f
mrnaMisMatchFreeList	hg/lib/mrnaMisMatch.c	/^void mrnaMisMatchFreeList(struct mrnaMisMatch **pList)$/;"	f
mrnaMisMatchLoad	hg/lib/mrnaMisMatch.c	/^struct mrnaMisMatch *mrnaMisMatchLoad(char **row)$/;"	f
mrnaMisMatchLoadAll	hg/lib/mrnaMisMatch.c	/^struct mrnaMisMatch *mrnaMisMatchLoadAll(char *fileName) $/;"	f
mrnaMisMatchLoadAllByChar	hg/lib/mrnaMisMatch.c	/^struct mrnaMisMatch *mrnaMisMatchLoadAllByChar(char *fileName, char chopper) $/;"	f
mrnaMisMatchLoadAllByTab	hg/inc/mrnaMisMatch.h	39;"	d
mrnaMisMatchOutput	hg/lib/mrnaMisMatch.c	/^void mrnaMisMatchOutput(struct mrnaMisMatch *el, FILE *f, char sep, char lastSep) $/;"	f
mrnaMisMatchTabOut	hg/inc/mrnaMisMatch.h	58;"	d
mrnaRefCount	hg/inc/altGraph.h	/^    int mrnaRefCount;	\/* Number of supporting mRNAs. *\/$/;"	m	struct:altGraph
mrnaRefCount	hg/inc/altGraphX.h	/^    int mrnaRefCount;	\/* Number of supporting mRNAs. *\/$/;"	m	struct:altGraphX
mrnaRefCount	hg/inc/geneGraph.h	/^    int mrnaRefCount;                   \/* Count of mRNAs supporting this. *\/$/;"	m	struct:geneGraph
mrnaRefCount	hg/inc/ggDbRep.h	/^    int mrnaRefCount;	\/* Number of supporting mRNAs *\/$/;"	m	struct:altGraph
mrnaRefs	hg/inc/altGraph.h	/^    char **mrnaRefs;	\/* Ids of mrnas supporting this. *\/$/;"	m	struct:altGraph
mrnaRefs	hg/inc/altGraphX.h	/^    char **mrnaRefs;	\/* Ids of mrnas supporting this. *\/$/;"	m	struct:altGraphX
mrnaRefs	hg/inc/geneGraph.h	/^    char **mrnaRefs;                    \/* names\/ids of mrnas supporting this. *\/$/;"	m	struct:geneGraph
mrnaRefs	hg/inc/ggDbRep.h	/^    unsigned *mrnaRefs;	\/* IDs of all supporting mRNAs *\/$/;"	m	struct:altGraph
mrnaStart	hg/inc/gbMiscDiff.h	/^    int mrnaStart;	\/* start within mRNA *\/$/;"	m	struct:gbMiscDiff
mrnaTableIx	hg/inc/hui.h	/^   int mrnaTableIx;	\/* Index of field in mrna table. *\/$/;"	m	struct:mrnaFilter
mrnaTables	hg/lib/hgFind.c	/^static char *mrnaTables[] = { "all_mrna", "xenoMrna", NULL };$/;"	v	file:
mrnaTissues	hg/inc/altGraphX.h	/^    int *mrnaTissues;	\/* Ids of tissues that mrnas come from, indexes into tissue table *\/$/;"	m	struct:altGraphX
mrnaTissues	hg/inc/geneGraph.h	/^    int *mrnaTissues;                   \/* tissues from which mrnas originated, 0 if unknown. Indexes into tissue table *\/$/;"	m	struct:geneGraph
mrnaType	hg/lib/hgFind.c	/^static char *mrnaType(char *db, char *acc)$/;"	f	file:
mrnaTypes	hg/inc/geneGraph.h	/^    char **mrnaTypes;			\/* Types for mrnaRefs. *\/$/;"	m	struct:geneGraph
mrnaUiData	hg/inc/hui.h	/^struct mrnaUiData$/;"	s
msbFirstReadBits64	lib/common.c	/^bits64 msbFirstReadBits64(FILE *f)$/;"	f
msbFirstWriteBits64	lib/common.c	/^void msbFirstWriteBits64(FILE *f, bits64 x)$/;"	f
mseq	hg/inc/ancientRref.h	/^    char *mseq;	\/* mouse sequence with gaps *\/$/;"	m	struct:ancientRref
msg	hg/inc/coordConv.h	/^    char *msg; \/** optional message or url *\/$/;"	m	struct:coordConvRep
msg	lib/md5.c	/^static char *msg[] =$/;"	v	file:
mulDiv	lib/intExp.c	/^static double mulDiv()$/;"	f	file:
multViewCount	hg/lib/hui.c	/^int multViewCount(struct trackDb *parentTdb)$/;"	f
multi	inc/mime.h	/^    struct mimePart *multi;\/* points to head of child list if itself contains multiparts *\/$/;"	m	struct:mimePart	typeref:struct:mimePart::mimePart
multiple	hg/inc/liftOverChain.h	/^    char multiple[2];	\/* Use -multiple by default. *\/$/;"	m	struct:liftOverChain
multiply	lib/memgfx.c	/^Color multiply(Color src, Color new)$/;"	f
mustCloseFd	lib/common.c	/^void mustCloseFd(int *pFd)$/;"	f
mustFindChromIx	lib/crTree.c	/^static bits32 mustFindChromIx(char *chrom, struct name32 *array, bits32 chromCount)$/;"	f	file:
mustFindColumn	lib/asParse.c	/^static struct asColumn *mustFindColumn(struct asObject *table, char *colName)$/;"	f	file:
mustFindVarData	lib/cheapcgi.c	/^static char *mustFindVarData(char *varName)$/;"	f	file:
mustFork	lib/osunix.c	/^int mustFork()$/;"	f
mustGetChromInfo	hg/lib/hdb.c	/^static struct chromInfo *mustGetChromInfo(char *db, char *chrom)$/;"	f	file:
mustGetLine	lib/common.c	/^void mustGetLine(FILE *file, char *buf, int charCount)$/;"	f
mustGetSeqAndId	hg/lib/hdb.c	/^static char* mustGetSeqAndId(struct sqlConnection *conn, char *acc,$/;"	f	file:
mustLseek	lib/common.c	/^off_t mustLseek(int fd, off_t offset, int whence)$/;"	f
mustOpen	lib/common.c	/^FILE *mustOpen(char *fileName, char *mode)$/;"	f
mustOpenFd	lib/common.c	/^int mustOpenFd(char *fileName, int flags)$/;"	f
mustRead	lib/common.c	/^void mustRead(FILE *file, void *buf, size_t size)$/;"	f
mustReadFd	lib/common.c	/^void mustReadFd(int fd, void *buf, size_t size)$/;"	f
mustReadOne	inc/common.h	1064;"	d
mustReadOneFd	inc/common.h	1097;"	d
mustReadString	lib/common.c	/^char *mustReadString(FILE *f)$/;"	f
mustSystem	lib/common.c	/^void mustSystem(char *cmd)$/;"	f
mustWrite	lib/common.c	/^void mustWrite(FILE *file, void *buf, size_t size)$/;"	f
mustWriteFd	lib/common.c	/^void mustWriteFd(int fd, void *buf, size_t size)$/;"	f
mutex	lib/synQueue.c	/^    pthread_mutex_t mutex;	\/* Mutex to prevent simultanious access. *\/$/;"	m	struct:synQueue	file:
mutexes	lib/https.c	/^static pthread_mutex_t *mutexes = NULL;$/;"	v	file:
mwtBigWig	inc/metaWig.h	/^    mwtBigWig,$/;"	e	enum:metaWigType
mwtSections	inc/metaWig.h	/^    mwtSections,$/;"	e	enum:metaWigType
myInt	lib/gemfont.c	/^    } myInt;$/;"	t	typeref:union:__anon1	file:
mySource	inc/annoGrator.h	/^    struct annoStreamer *mySource;	\/\/ internal source$/;"	m	struct:annoGrator	typeref:struct:annoGrator::annoStreamer
mysqlHost	lib/osunix.c	/^char *mysqlHost()$/;"	f
mysqlTableStatus	hg/inc/mysqlTableStatus.h	/^struct mysqlTableStatus$/;"	s
mysqlTableStatusCommaOut	hg/inc/mysqlTableStatus.h	50;"	d
mysqlTableStatusFree	hg/lib/mysqlTableStatus.c	/^void mysqlTableStatusFree(struct mysqlTableStatus **pEl)$/;"	f
mysqlTableStatusFreeList	hg/lib/mysqlTableStatus.c	/^void mysqlTableStatusFreeList(struct mysqlTableStatus **pList)$/;"	f
mysqlTableStatusLoad	hg/lib/mysqlTableStatus.c	/^struct mysqlTableStatus *mysqlTableStatusLoad(char **row)$/;"	f
mysqlTableStatusOutput	hg/lib/mysqlTableStatus.c	/^void mysqlTableStatusOutput(struct mysqlTableStatus *el, FILE *f, char sep, char lastSep) $/;"	f
mysqlTableStatusStaticLoad	hg/lib/mysqlTableStatus.c	/^void mysqlTableStatusStaticLoad(char **row, struct mysqlTableStatus *ret)$/;"	f
mysqlTableStatusTabOut	hg/inc/mysqlTableStatus.h	47;"	d
n	hg/inc/agpGap.h	/^    char n[2];	\/* always 'N' *\/$/;"	m	struct:agpGap
n	inc/correlate.h	/^    long long n;		\/* Number of samples. *\/$/;"	m	struct:correlate
n	inc/rbTree.h	/^    int n;					\/* Number of items in tree. *\/$/;"	m	struct:rbTree
nBlockCount	inc/twoBit.h	/^    bits32 nBlockCount;		\/* Count of blocks of Ns. *\/$/;"	m	struct:twoBit
nChars	inc/seqOut.h	/^    char nChars[256];$/;"	m	struct:baf
nCount	hg/inc/pslWQueryID.h	/^    unsigned nCount;	\/* Number of 'N' bases *\/$/;"	m	struct:pslWQueryID
nCount	hg/inc/pslWScore.h	/^    unsigned nCount;	\/* Number of 'N' bases *\/$/;"	m	struct:pslWScore
nCount	inc/psl.h	/^    unsigned nCount;	\/* Number of 'N' bases *\/$/;"	m	struct:psl
nCount	inc/xAli.h	/^    unsigned nCount;	\/* Number of 'N' bases *\/$/;"	m	struct:xAli
nCountDown	inc/seqOut.h	/^    bool nCountDown;	 \/* True if want needle numbers counting down. *\/$/;"	m	struct:baf
nCurPos	inc/seqOut.h	/^    int nCurPos;$/;"	m	struct:baf
nEnd	inc/cda.h	/^    int nStart, nEnd;           \/* Start and end position in cDNA. *\/$/;"	m	struct:cdaBlock
nEnd	inc/fuzzyFind.h	/^    char *nStart, *nEnd;          \/* Needle start and end. (1\/2 open interval) *\/$/;"	m	struct:ffAli
nEnd	jkOwnLib/fuzzyFind.c	/^    DNA *hStart, *hEnd, *nStart, *nEnd;$/;"	m	struct:protoGene	file:
nLineStart	inc/seqOut.h	/^    int nLineStart;$/;"	m	struct:baf
nNumOff	inc/seqOut.h	/^    int nNumOff, hNumOff;$/;"	m	struct:baf
nSizes	inc/twoBit.h	/^    bits32 *nSizes;		\/* Sizes of blocks of Ns. *\/$/;"	m	struct:twoBit
nStart	inc/cda.h	/^    int nStart, nEnd;           \/* Start and end position in cDNA. *\/$/;"	m	struct:cdaBlock
nStart	inc/fuzzyFind.h	/^    char *nStart, *nEnd;          \/* Needle start and end. (1\/2 open interval) *\/$/;"	m	struct:ffAli
nStart	jkOwnLib/fuzzyFind.c	/^    DNA *hStart, *hEnd, *nStart, *nEnd;$/;"	m	struct:protoGene	file:
nStarts	inc/twoBit.h	/^    bits32 *nStarts;		\/* Starts of blocks of Ns. *\/$/;"	m	struct:twoBit
nWidth	hg/inc/trackLayout.h	/^    int nWidth;			\/* Width of 'N' in font. *\/$/;"	m	struct:trackLayout
naForEmpty	lib/common.c	/^char *naForEmpty(char *s)$/;"	f
naForNull	lib/common.c	/^char *naForNull(char *s)$/;"	f
naStr	lib/common.c	/^static char *naStr = "n\/a";$/;"	v	file:
name	hg/inc/acemblyClass.h	/^    char *name;	\/* Transcript ID for Acembly gene *\/$/;"	m	struct:acemblyClass
name	hg/inc/affyAllExonProbe.h	/^    char *name;	\/* ID of the probe *\/$/;"	m	struct:affyAllExonProbe
name	hg/inc/affyTranscriptome.h	/^    char *name;	\/* Name *\/$/;"	m	struct:affyTranscriptome
name	hg/inc/alignInfo.h	/^    char *name;	\/* hit name *\/$/;"	m	struct:alignInfo
name	hg/inc/allpredictions.h	/^    char *name;	\/* prediction name *\/$/;"	m	struct:allpredictions
name	hg/inc/altGraphX.h	/^    char *name;	\/* Human readable name. *\/$/;"	m	struct:altGraphX
name	hg/inc/ancientRref.h	/^    char *name;	\/* human repeat name  *\/$/;"	m	struct:ancientRref
name	hg/inc/arCOGs.h	/^    char *name;	\/* hit name *\/$/;"	m	struct:arCOGs
name	hg/inc/arcogdesc.h	/^    char *name;	\/* arCOG name *\/$/;"	m	struct:arcogdesc
name	hg/inc/atomDb.h	/^    char *name;	\/* atom name *\/$/;"	m	struct:atom
name	hg/inc/bacCloneXRef.h	/^    char *name;	\/* External name for BAC clone *\/$/;"	m	struct:bacCloneXRef
name	hg/inc/bactigPos.h	/^    char *name;	\/* Bactig *\/$/;"	m	struct:bactigPos
name	hg/inc/bed12Source.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed12Source
name	hg/inc/bed12wSeq.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed12wSeq
name	hg/inc/bed5FloatScore.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed5FloatScore
name	hg/inc/bed5Pval.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed5Pval
name	hg/inc/bed6FloatScore.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed6FloatScore
name	hg/inc/bed8Attrs.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed8Attrs
name	hg/inc/bedDetail.h	/^    char *name;	\/* Short Name of item *\/$/;"	m	struct:bedDetail
name	hg/inc/bgiGeneInfo.h	/^    char *name;	\/* BGI annotation gene name *\/$/;"	m	struct:bgiGeneInfo
name	hg/inc/bgiSnp.h	/^    char *name;	\/* BGI SNP name: snp.superctg.ctg.pos.type.strainID *\/$/;"	m	struct:bgiSnp
name	hg/inc/blastzNet.h	/^    char *name;	\/* Mouse Chromosome *\/$/;"	m	struct:blastzNet
name	hg/inc/borf.h	/^    char *name;	\/* Name of mRNA *\/$/;"	m	struct:borf
name	hg/inc/borkPseudoHom.h	/^    char *name;	\/* Bork pseudogene gene name *\/$/;"	m	struct:borkPseudoHom
name	hg/inc/cddDesc.h	/^    char *name;	\/* hit name *\/$/;"	m	struct:cddDesc
name	hg/inc/cddInfo.h	/^    char *name;	\/* hit name *\/$/;"	m	struct:cddInfo
name	hg/inc/cdsEvidence.h	/^    char *name;	\/* Name of transcript *\/$/;"	m	struct:cdsEvidence
name	hg/inc/cdsOrtho.h	/^    char *name;	\/* Name of transcript *\/$/;"	m	struct:cdsOrtho
name	hg/inc/cdsPick.h	/^    char *name;	\/* Name of transcript *\/$/;"	m	struct:cdsPick
name	hg/inc/celeraCoverage.h	/^    char *name;	\/* Source of Information *\/$/;"	m	struct:celeraCoverage
name	hg/inc/celeraDupPositive.h	/^    char *name;	\/* Other FPC contig involved NEED BETTER DESCRIPTION*\/$/;"	m	struct:celeraDupPositive
name	hg/inc/cgh.h	/^    char *name;	\/* Name of the cell line (type 3 only) *\/$/;"	m	struct:cgh
name	hg/inc/chainNet.h	/^    char *name;			\/* Chromosome name. *\/$/;"	m	struct:chainNet
name	hg/inc/chr18deletions.h	/^    char *name;	\/* Name of STS marker *\/$/;"	m	struct:chr18deletions
name	hg/inc/chromGraph.h	/^    char *name;			\/* Chromosome name. *\/$/;"	m	struct:cgbChrom
name	hg/inc/clonePos.h	/^    char *name;	\/* Name of clone including version *\/$/;"	m	struct:clonePos
name	hg/inc/cnpIafrate.h	/^    char *name;	\/* BAC name *\/$/;"	m	struct:cnpIafrate
name	hg/inc/cnpIafrate2.h	/^    char *name;	\/* BAC name *\/$/;"	m	struct:cnpIafrate2
name	hg/inc/cnpLocke.h	/^    char *name;	\/* BAC Name *\/$/;"	m	struct:cnpLocke
name	hg/inc/cnpRedon.h	/^    char *name;	\/* Reference SNP identifier or Affy SNP name *\/$/;"	m	struct:cnpRedon
name	hg/inc/cnpSebat.h	/^    char *name;	\/* Gain or Loss *\/$/;"	m	struct:cnpSebat
name	hg/inc/cnpSebat2.h	/^    char *name;	\/* Gain or Loss *\/$/;"	m	struct:cnpSebat2
name	hg/inc/cnpSharp.h	/^    char *name;	\/* BAC name *\/$/;"	m	struct:cnpSharp
name	hg/inc/cnpSharp2.h	/^    char *name;	\/* BAC name *\/$/;"	m	struct:cnpSharp2
name	hg/inc/codeBlast.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:codeBlast
name	hg/inc/codeBlastScore.h	/^    char name[256];	\/* Code *\/$/;"	m	struct:codeBlastScore
name	hg/inc/cogs.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:COG
name	hg/inc/cogsxra.h	/^    char *name;	\/* Name of COG *\/$/;"	m	struct:COGXra
name	hg/inc/columnInfo.h	/^    char *name;	\/* Column name *\/$/;"	m	struct:columnInfo
name	hg/inc/cpgIsland.h	/^    char *name;	\/* CpG Island *\/$/;"	m	struct:cpgIsland
name	hg/inc/cpgIslandExt.h	/^    char *name;	\/* CpG Island *\/$/;"	m	struct:cpgIslandExt
name	hg/inc/customFactory.h	/^    char *name;		\/* Name - psl, bed, wig, chromGraph, etc. *\/$/;"	m	struct:customFactory
name	hg/inc/cutter.h	/^    char *name;	\/* Name of Enzyme *\/$/;"	m	struct:cutter
name	hg/inc/cytoBand.h	/^    char *name;	\/* Name of cytogenetic band *\/$/;"	m	struct:cytoBand
name	hg/inc/dbDb.h	/^    char *name;	\/* Short name of database.  'hg8' or the like *\/$/;"	m	struct:dbDb
name	hg/inc/dbRIP.h	/^    char *name;	\/* Database ID *\/$/;"	m	struct:dbRIP
name	hg/inc/defaultDb.h	/^    char *name;	\/* Short name of database.  'hg8' or the like *\/$/;"	m	struct:defaultDb
name	hg/inc/delConrad2.h	/^    char *name;	\/* Name *\/$/;"	m	struct:delConrad2
name	hg/inc/delHinds2.h	/^    char *name;	\/* Name *\/$/;"	m	struct:delHinds2
name	hg/inc/dgv.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:dgv
name	hg/inc/dless.h	/^    char *name;	\/* Name of item (id) *\/$/;"	m	struct:dless
name	hg/inc/dnaProbe.h	/^    char *name;	\/* name of the dna probe *\/$/;"	m	struct:dnaProbe
name	hg/inc/dvBed.h	/^    char *name;	\/* BAC Name *\/$/;"	m	struct:dvBed
name	hg/inc/easyGene.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:easyGene
name	hg/inc/ensInfo.h	/^    char *name;	\/* Ensembl transcript ID *\/$/;"	m	struct:ensInfo
name	hg/inc/ensPhusionBlast.h	/^    char *name;	\/* Name of $Xeno chromosome *\/$/;"	m	struct:ensPhusionBlast
name	hg/inc/estOrientInfo.h	/^    char *name;	\/* Accession of EST *\/$/;"	m	struct:estOrientInfo
name	hg/inc/exoFish.h	/^    char *name;	\/* Just a dummy dot *\/$/;"	m	struct:exoFish
name	hg/inc/expData.h	/^    char *name;	\/* Name of gene\/target\/probe etc. *\/$/;"	m	struct:expData
name	hg/inc/expRecord.h	/^    char *name;	\/* name of experiment *\/$/;"	m	struct:expRecord
name	hg/inc/exprBed.h	/^    char *name;	\/* feature standardized name; can be a gene, exon or other *\/$/;"	m	struct:exprBed
name	hg/inc/fbTables.h	/^    char *name;	\/* A name (synonym or real) *\/$/;"	m	struct:fbSynonym
name	hg/inc/fbTables.h	/^    char *name;	\/* Allele name *\/$/;"	m	struct:fbAllele
name	hg/inc/featureBits.h	/^    char *name;		\/* Symbolic name for feature. *\/$/;"	m	struct:featureBits
name	hg/inc/fishClones.h	/^    char *name;	\/* Name of clone *\/$/;"	m	struct:fishClones
name	hg/inc/flyBase2004Xref.h	/^    char *name;	\/* FlyBase annotation gene ID *\/$/;"	m	struct:flyBase2004Xref
name	hg/inc/flyreg.h	/^    char *name;	\/* Factor *\/$/;"	m	struct:flyreg
name	hg/inc/flyreg2.h	/^    char *name;	\/* Factor *\/$/;"	m	struct:flyreg2
name	hg/inc/fosEndPairs.h	/^    char *name;	\/* Name of fosmid *\/$/;"	m	struct:fosEndPairs
name	hg/inc/gbProtAnn.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:gbProtAnn
name	hg/inc/gbRNAs.h	/^    char *name;	\/* gene name *\/$/;"	m	struct:gbRNAs
name	hg/inc/gcPercent.h	/^    char *name;	\/* Constant string GCpct *\/$/;"	m	struct:gcPercent
name	hg/inc/genMapDb.h	/^    char *name;	\/* Name of Clone *\/$/;"	m	struct:genMapDb
name	hg/inc/gencodeGeneClass.h	/^    char *name;	\/* Transcript ID for Gencode gene *\/$/;"	m	struct:gencodeGeneClass
name	hg/inc/gencodeIntron.h	/^    char *name;	\/* Intron_id from GTF *\/$/;"	m	struct:gencodeIntron
name	hg/inc/geneBands.h	/^    char *name;	\/* Name of gene - hugo if possible *\/$/;"	m	struct:geneBands
name	hg/inc/genePred.h	/^    char *name;	\/* Name of loci, transcript, mRNA, etc *\/$/;"	m	struct:genePred
name	hg/inc/geneTree.h	/^    char *name;	\/* Name of gene *\/$/;"	m	struct:geneTree
name	hg/inc/genomeRangeTreeFile.h	/^    char *name;$/;"	m	struct:genomeRangeTreeFile
name	hg/inc/genomicDups.h	/^    char *name;	\/* Other FPC contig involved *\/$/;"	m	struct:genomicDups
name	hg/inc/genomicSuperDups.h	/^    char *name;	\/* Other chromosome involved *\/$/;"	m	struct:genomicSuperDups
name	hg/inc/growthCondition.h	/^    char *name;	\/* Symbolic name of growth condition *\/$/;"	m	struct:growthCondition
name	hg/inc/grp.h	/^    char *name;	\/* Group name.  Connects with trackDb.grp *\/$/;"	m	struct:grp
name	hg/inc/gv.h	/^    char *name;	\/* ID for this mutation *\/$/;"	m	struct:gvPos
name	hg/inc/gv.h	/^    char *name;	\/* Official nomenclature description of mutation *\/$/;"	m	struct:gv
name	hg/inc/gwasCatalog.h	/^    char *name;	\/* ID of SNP associated with trait *\/$/;"	m	struct:gwasCatalog
name	hg/inc/hapmapAlleleFreq.h	/^    char *name;	\/* rsId or id *\/$/;"	m	struct:hapmapAlleleFreq
name	hg/inc/hapmapAlleles.h	/^    char *name;	\/* Reference SNP identifier from dbSnp *\/$/;"	m	struct:hapmapAlleles
name	hg/inc/hapmapAllelesCombined.h	/^    char *name;	\/* Reference SNP identifier from dbSnp *\/$/;"	m	struct:hapmapAllelesCombined
name	hg/inc/hapmapAllelesOrtho.h	/^    char *name;	\/* Reference SNP identifier from dbSnp *\/$/;"	m	struct:hapmapAllelesOrtho
name	hg/inc/hapmapAllelesSummary.h	/^    char *name;	\/* Reference SNP identifier from dbSnp *\/$/;"	m	struct:hapmapAllelesSummary
name	hg/inc/hapmapLd.h	/^    char *name;	\/* rsId at chromStart *\/$/;"	m	struct:hapmapLd
name	hg/inc/hapmapPhaseIIISummary.h	/^    char *name;	\/* Reference SNP identifier from dbSnp *\/$/;"	m	struct:hapmapPhaseIIISummary
name	hg/inc/hapmapPrimateAlleles.h	/^    char *name;	\/* Name of SNP - rsId or temporary name *\/$/;"	m	struct:hapmapPrimateAlleles
name	hg/inc/hapmapSnps.h	/^    char *name;	\/* Reference SNP identifier from dbSnp *\/$/;"	m	struct:hapmapSnps
name	hg/inc/hapmapSnpsCombined.h	/^    char *name;	\/* Reference SNP identifier from dbSnp *\/$/;"	m	struct:hapmapSnpsCombined
name	hg/inc/hgFind.h	/^     char *name;		\/* Name of position - one word. *\/$/;"	m	struct:hgPos
name	hg/inc/hgFind.h	/^    char *name;			\/* Name of table.  Not allocated here. *\/$/;"	m	struct:hgPosTable
name	hg/inc/hgGene.h	/^    char *name;	\/* Name of gene *\/$/;"	m	struct:hgGene
name	hg/inc/hgGene.h	/^    char *name;	\/* Name of gene finder *\/$/;"	m	struct:geneFinder
name	hg/inc/hgGene.h	/^    char *name;	\/* Name of transcript *\/$/;"	m	struct:hgTranscript
name	hg/inc/hgMaf.h	/^    char *name;$/;"	m	struct:wigMafSpecies
name	hg/inc/hgdpGeo.h	/^    char *name;	\/* SNP ID (dbSNP reference SNP rsNNNNN ID) *\/$/;"	m	struct:hgdpGeo
name	hg/inc/hgnc.h	/^    char *name;	\/* Approved Name *\/$/;"	m	struct:hgnc
name	hg/inc/hui.h	/^    char *name;                 \/\/ name of field$/;"	m	struct:extraField
name	hg/inc/hui.h	/^   char *name;	\/* Name (not allocated here) *\/$/;"	m	struct:trackNameAndLabel
name	hg/inc/humanParalog.h	/^    char *name;	\/* Human Gene Prediction - paralog *\/$/;"	m	struct:humanParalog
name	hg/inc/isochores.h	/^    char *name;	\/* Name of isochore - AT-rich or GC-rich *\/$/;"	m	struct:isochores
name	hg/inc/itemAttr.h	/^    char *name;	\/* name of item *\/$/;"	m	struct:itemAttr
name	hg/inc/itemDetailsHtml.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:itemDetailsHtml
name	hg/inc/jaxQTL.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:jaxQTL
name	hg/inc/jaxQTL2.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:jaxQTL2
name	hg/inc/jaxQTL3.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:jaxQTL3
name	hg/inc/jgiGene.h	/^    char *name;	\/* JGI locus tag *\/$/;"	m	struct:jgiGene
name	hg/inc/joiner.h	/^    char *name;				\/* Name of field set. *\/$/;"	m	struct:joinerSet
name	hg/inc/joiner.h	/^    char *name;				\/* Type name. *\/$/;"	m	struct:joinerType
name	hg/inc/knownInfo.h	/^    char *name;	\/* connects with genieKnown->name *\/$/;"	m	struct:knownInfo
name	hg/inc/knownMore.h	/^    char *name;	\/* The name displayed in the browser: OMIM, gbGeneName, or transId *\/$/;"	m	struct:knownMore
name	hg/inc/landmark.h	/^    char *name;	\/* name of landmark *\/$/;"	m	struct:landmark
name	hg/inc/ld.h	/^    char *name;	\/* rsId at chromStart *\/$/;"	m	struct:ld
name	hg/inc/ld2.h	/^    char *name;	\/* rsId at chromStart *\/$/;"	m	struct:ld2
name	hg/inc/lfs.h	/^    char *name;	\/* Name of clone *\/$/;"	m	struct:lfs
name	hg/inc/llaInfo.h	/^    char *name;	\/* Name of primer pair *\/$/;"	m	struct:llaInfo
name	hg/inc/lowelabArkinOperonScore.h	/^    char *name;	\/* operon name *\/$/;"	m	struct:lowelabArkinOperonScore
name	hg/inc/lowelabPfamHit.h	/^    char *name;	\/* hit name *\/$/;"	m	struct:lowelabPfamHits
name	hg/inc/lowelabTIGROperonScore.h	/^    char *name;	\/* operon name *\/$/;"	m	struct:lowelabTIGROperonScore
name	hg/inc/mafFrames.h	/^    char *name;	\/* Name of gene used to define frame *\/$/;"	m	struct:mafFrames
name	hg/inc/makeItemsItem.h	/^    char *name;	\/* Name of item - up to 16 chars *\/$/;"	m	struct:makeItemsItem
name	hg/inc/mammalPsg.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:mammalPsg
name	hg/inc/mapSts.h	/^    char *name;	\/* Name of STS marker *\/$/;"	m	struct:mapSts
name	hg/inc/mcnBreakpoints.h	/^    char *name;	\/* Shortened Traitgroup Name *\/$/;"	m	struct:mcnBreakpoints
name	hg/inc/megablastInfo.h	/^    char *name;	\/* hit name *\/$/;"	m	struct:megablastInfo
name	hg/inc/metaChromGraph.h	/^    char *name;	\/* Corresponds to chrom graph table name *\/$/;"	m	struct:metaChromGraph
name	hg/inc/microarray.h	/^    char *name;		\/* Column name. *\/$/;"	m	struct:maMedSpec
name	hg/inc/microarray.h	/^    char *name;$/;"	m	struct:maGrouping
name	hg/inc/minGeneInfo.h	/^    char *name;	\/* gene accession *\/$/;"	m	struct:minGeneInfo
name	hg/inc/mouseOrtho.h	/^    char *name;	\/* Mouse Gene Prediction *\/$/;"	m	struct:mouseOrtho
name	hg/inc/mouseSyn.h	/^    char *name;	\/* Name of mouse chromosome *\/$/;"	m	struct:mouseSyn
name	hg/inc/mouseSynWhd.h	/^    char *name;	\/* Name of mouse chromosome *\/$/;"	m	struct:mouseSynWhd
name	hg/inc/mrnaMisMatch.h	/^    char *name;	\/* mRNA accession *\/$/;"	m	struct:mrnaMisMatch
name	hg/inc/mysqlTableStatus.h	/^    char *name;	\/* Name of table *\/$/;"	m	struct:mysqlTableStatus
name	hg/inc/ncRna.h	/^    char *name;	\/* Name of gene *\/$/;"	m	struct:ncRna
name	hg/inc/omicia.h	/^    char *name;	\/* ID for this mutation *\/$/;"	m	struct:omiciaAuto
name	hg/inc/omicia.h	/^    char *name;	\/* ID for this mutation *\/$/;"	m	struct:omiciaHand
name	hg/inc/oreganno.h	/^    char *name;	\/* name of regulatory region *\/$/;"	m	struct:oreganno
name	hg/inc/oregannoOther.h	/^    char *name;	\/* name of regulatory region *\/$/;"	m	struct:oregannoOther
name	hg/inc/orthoAlleles.h	/^    char *name;	\/* Name of SNP - rsId or temporary name *\/$/;"	m	struct:orthoAlleles
name	hg/inc/pairedTagAlign.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:pairedTagAlign
name	hg/inc/pepPred.h	/^    char *name;	\/* Name of gene - same as in genePred *\/$/;"	m	struct:pepPred
name	hg/inc/peptideMapping.h	/^    char *name;	\/* Peptide sequence of the hit *\/$/;"	m	struct:peptideMapping
name	hg/inc/pgPhenoAssoc.h	/^    char *name;	\/* Phenotype *\/$/;"	m	struct:pgPhenoAssoc
name	hg/inc/pgSnp.h	/^    char *name;	\/* alleles *\/$/;"	m	struct:pgSnp
name	hg/inc/plasEndPairs.h	/^    char *name;	\/* Name of clone *\/$/;"	m	struct:plasEndPairs
name	hg/inc/polyGenotype.h	/^    char *name;	\/* Database ID identifying RIP *\/$/;"	m	struct:polyGenotype
name	hg/inc/protVar.h	/^    char *name;	\/* ID for this mutation *\/$/;"	m	struct:protVarPos
name	hg/inc/protVar.h	/^    char *name;	\/* Official nomenclature description of mutation *\/$/;"	m	struct:protVar
name	hg/inc/pscreen.h	/^    char *name;	\/* Name of item (mutant strain with P el. insert here) *\/$/;"	m	struct:pscreen
name	hg/inc/pseudoGeneLink.h	/^    char *name;	\/* Name of pseudogene *\/$/;"	m	struct:pseudoGeneLink
name	hg/inc/putaInfo.h	/^    char *name;	\/* stamp's name *\/$/;"	m	struct:putaInfo
name	hg/inc/qaSeq.h	/^    char *name;           \/* Name of sequence. *\/$/;"	m	struct:qaSeq
name	hg/inc/recombRate.h	/^    char *name;	\/* Constant string recombRate *\/$/;"	m	struct:recombRate
name	hg/inc/recombRateMouse.h	/^    char *name;	\/* Constant string recombRate *\/$/;"	m	struct:recombRateMouse
name	hg/inc/recombRateRat.h	/^    char *name;	\/* Constant string recombRate *\/$/;"	m	struct:recombRateRat
name	hg/inc/refLink.h	/^    char *name;	\/* Name displayed in UI *\/$/;"	m	struct:refLink
name	hg/inc/retroMrnaInfo.h	/^    char *name;	\/* Name of pseudogene col4 *\/$/;"	m	struct:retroMrnaInfo
name	hg/inc/rgdQtl.h	/^    char *name;	\/* Name of QTL *\/$/;"	m	struct:rgdQtl
name	hg/inc/rhMapInfo.h	/^    char *name;	\/* Name of Radiation Hybrid (RH) map marker *\/$/;"	m	struct:rhMapInfo
name	hg/inc/rhMapZfishInfo.h	/^    char *name;	\/* Name of Radiation Hybrid (RH) map marker *\/$/;"	m	struct:rhMapZfishInfo
name	hg/inc/rikenBest.h	/^    char *name;	\/* Riken mRNA ID *\/$/;"	m	struct:rikenBest
name	hg/inc/rikenCluster.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:rikenUcscCluster
name	hg/inc/rnaFold.h	/^    char *name;	\/* mRNA accession *\/$/;"	m	struct:rnaFold
name	hg/inc/rnaGene.h	/^    char *name;	\/* Name of gene *\/$/;"	m	struct:rnaGene
name	hg/inc/rnaGenes.h	/^    char *name;	\/* Other chromosome involved *\/$/;"	m	struct:rnaGenes
name	hg/inc/rnaGroup.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:rnaGroup
name	hg/inc/rnaHybridization.h	/^    char *name;	\/* match name *\/$/;"	m	struct:rnaHybridization
name	hg/inc/rnaSecStr.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:rnaSecStr
name	hg/inc/roughAli.h	/^    char *name;	\/* Name of other sequence *\/$/;"	m	struct:roughAli
name	hg/inc/sample.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:sample
name	hg/inc/sanger22extra.h	/^    char *name;	\/* Transcript name *\/$/;"	m	struct:sanger22extra
name	hg/inc/sangerGene.h	/^    char *name;	\/* Name of gene *\/$/;"	m	struct:sangerGene
name	hg/inc/sgdAbundance.h	/^    char *name;	\/* ORF name in sgdGene table *\/$/;"	m	struct:sgdAbundance
name	hg/inc/sgdClone.h	/^    char *name;	\/* Washington University Name *\/$/;"	m	struct:sgdClone
name	hg/inc/sgdDescription.h	/^    char *name;	\/* Name in sgdGene or sgdOther table *\/$/;"	m	struct:sgdDescription
name	hg/inc/sgdOther.h	/^    char *name;	\/* Feature name *\/$/;"	m	struct:sgdOther
name	hg/inc/simpleRepeat.h	/^    char *name;	\/* Simple Repeats tag name *\/$/;"	m	struct:simpleRepeat
name	hg/inc/snoRNAs.h	/^    char *name;	\/* snoRNA RNA gene name *\/$/;"	m	struct:snoRNAs
name	hg/inc/snp.h	/^    char *name;	\/* Reference SNP identifier or Affy SNP name *\/$/;"	m	struct:snp
name	hg/inc/snp125.h	/^    char *name;	\/* Reference SNP identifier or Affy SNP name *\/$/;"	m	struct:snp125
name	hg/inc/snp125.h	/^    char *name;	\/* Reference SNP identifier or Affy SNP name *\/$/;"	m	struct:snp125Extended
name	hg/inc/snp125CodingCoordless.h	/^    char *name;	\/* Reference SNP identifier *\/$/;"	m	struct:snp125CodingCoordless
name	hg/inc/snp125Exceptions.h	/^    char *name;	\/* Reference SNP identifier or Affy SNP name *\/$/;"	m	struct:snp125Exceptions
name	hg/inc/snp132Ext.h	/^    char *name;	\/* dbSNP Reference SNP (rs) identifier *\/$/;"	m	struct:snp132Ext
name	hg/inc/snpMap.h	/^    char *name;	\/* Name of SNP - rsId or Affy name *\/$/;"	m	struct:snpMap
name	hg/inc/snpSeq.h	/^    char *name;	\/* rsId of sequence *\/$/;"	m	struct:snpSeq
name	hg/inc/snpTmp.h	/^    char *name;	\/* Reference SNP identifier or Affy SNP name *\/$/;"	m	struct:snpTmp
name	hg/inc/softPromoter.h	/^    char *name;	\/* As displayed in browser *\/$/;"	m	struct:softPromoter
name	hg/inc/softberryHom.h	/^    char *name;	\/* Softberry gene name *\/$/;"	m	struct:softberryHom
name	hg/inc/stanMad.h	/^    char *name;	\/* Name of the gene or sample that is at a given position. *\/$/;"	m	struct:stanMad
name	hg/inc/stsInfo.h	/^    char *name;	\/* Official UCSC name *\/$/;"	m	struct:stsInfo
name	hg/inc/stsInfo2.h	/^    char *name;	\/* Official UCSC name *\/$/;"	m	struct:stsInfo2
name	hg/inc/stsInfoMouse.h	/^    char *name;	\/* Official UCSC name *\/$/;"	m	struct:stsInfoMouse
name	hg/inc/stsInfoMouseNew.h	/^    char *name;	\/* Official UCSC name *\/$/;"	m	struct:stsInfoMouseNew
name	hg/inc/stsInfoRat.h	/^    char *name;	\/* Official UCSC name *\/$/;"	m	struct:stsInfoRat
name	hg/inc/stsMap.h	/^    char *name;	\/* Name of STS marker *\/$/;"	m	struct:stsMap
name	hg/inc/stsMapMouse.h	/^    char *name;	\/* Name of STS marker *\/$/;"	m	struct:stsMapMouse
name	hg/inc/stsMapMouseNew.h	/^    char *name;	\/* Name of STS marker *\/$/;"	m	struct:stsMapMouseNew
name	hg/inc/stsMapRat.h	/^    char *name;	\/* Name of STS marker *\/$/;"	m	struct:stsMapRat
name	hg/inc/stsMarker.h	/^    char *name;	\/* Name of STS marker *\/$/;"	m	struct:stsMarker
name	hg/inc/switchDbTss.h	/^    char *name;	\/* Name *\/$/;"	m	struct:switchDbTss
name	hg/inc/syntenyBerk.h	/^    char *name;	\/* Mouse Chromosome *\/$/;"	m	struct:syntenyBerk
name	hg/inc/syntenySanger.h	/^    char *name;	\/* Mouse Chromosome *\/$/;"	m	struct:syntenySanger
name	hg/inc/tRNAs.h	/^    char *name;	\/* transfer RNA gene name *\/$/;"	m	struct:tRNAs
name	hg/inc/tableStatus.h	/^    char *name;	\/* Name of table *\/$/;"	m	struct:tableStatus
name	hg/inc/targetDb.h	/^    char *name;	\/* Identifier for this target *\/$/;"	m	struct:targetDb
name	hg/inc/taxonDivision.h	/^    char *name;	\/* division name e.g. BCT, PLN, VRT, MAM, PRI... *\/$/;"	m	struct:taxonDivision
name	hg/inc/taxonGeneticCode.h	/^    char *name;	\/* division name e.g. BCT, PLN, VRT, MAM, PRI... *\/$/;"	m	struct:taxonGeneticCode
name	hg/inc/taxonName.h	/^    char *name;	\/* ncbi name *\/$/;"	m	struct:taxonName
name	hg/inc/taxonXref.h	/^    char *name;	\/* NCBI taxon name Binomial format  *\/$/;"	m	struct:taxonXref
name	hg/inc/tfbsCons.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:tfbsCons
name	hg/inc/tfbsConsFactors.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:tfbsConsFactors
name	hg/inc/tfbsConsSites.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:tfbsConsSites
name	hg/inc/tigrCmrGene.h	/^    char *name;	\/* TIGR locus *\/$/;"	m	struct:tigrCmrGene
name	hg/inc/tigrOperon.h	/^    char *name;	\/* operon name *\/$/;"	m	struct:tigrOperon
name	hg/inc/trackHub.h	/^    char *name;	\/* Something like hg18 or mm9 - a UCSC assembly database name. *\/$/;"	m	struct:trackHubGenome
name	hg/inc/trackHub.h	/^    char *name;	\/* Symbolic name of hub in cart, etc.  From trackHubOpen hubName parameter. *\/$/;"	m	struct:trackHub
name	hg/inc/trackVersion.h	/^    char *name;	\/* table name in database *\/$/;"	m	struct:trackVersion
name	hg/inc/transRegCode.h	/^    char *name;	\/* Name of transcription factore *\/$/;"	m	struct:transRegCode
name	hg/inc/transRegCodeCondition.h	/^    char *name;	\/* Name of transcription factor *\/$/;"	m	struct:transRegCodeCondition
name	hg/inc/transRegCodeProbe.h	/^    char *name;	\/* Name of probe *\/$/;"	m	struct:transRegCodeProbe
name	hg/inc/txCluster.h	/^    char *name;	\/* Cluster name *\/$/;"	m	struct:txCluster
name	hg/inc/txEdgeBed.h	/^    char *name;	\/* Name of evidence supporting edge *\/$/;"	m	struct:txEdgeBed
name	hg/inc/txEdgeOrtho.h	/^    char *name;	\/* Name of txGraph in other organism *\/$/;"	m	struct:txEdgeOrtho
name	hg/inc/txGraph.h	/^    char *name;	\/* Human readable name. *\/$/;"	m	struct:txGraph
name	hg/inc/txInfo.h	/^    char *name;	\/* Name of transcript *\/$/;"	m	struct:txInfo
name	hg/inc/txRnaAccs.h	/^    char *name;	\/* Transcript name *\/$/;"	m	struct:txRnaAccs
name	hg/inc/ucscRetroInfo.h	/^    char *name;	\/* Name of pseudogene col4 *\/$/;"	m	struct:ucscRetroInfo
name	hg/inc/ucscRetroOrtho.h	/^    char *name;	\/* Unique name of retrogene  *\/$/;"	m	struct:ucscRetroOrtho
name	hg/inc/variome.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:variome
name	hg/inc/vntr.h	/^    char *name;	\/* Name of item (Repeat unit) *\/$/;"	m	struct:vntr
name	hg/inc/wgRna.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:wgRna
name	hg/inc/wiggle.h	/^    char *name;			\/* Name of item *\/$/;"	m	struct:wiggle
name	hg/inc/wikiTrack.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:wikiTrack
name	hg/inc/zdobnovSynt.h	/^    char *name;	\/* Name of item:  *\/$/;"	m	struct:zdobnovSynt
name	hg/lib/chromGraph.c	/^    char *name;	\/* Not allocated here. *\/$/;"	m	struct:cInfo	file:
name	hg/lib/hgMaf.c	/^    char *name;		\/* Name - allocated in hash *\/$/;"	m	struct:oneOrg	file:
name	hg/lib/jksql.c	/^    char *name;         \/\/ name of profile$/;"	m	struct:sqlProfile	file:
name	hg/lib/liftOver.c	/^    char *name;                 \/* Chromosome name. *\/$/;"	m	struct:chromMap	file:
name	hg/lib/lowelabPfamHit.h	/^    char *name;	\/* hit name *\/$/;"	m	struct:lowelabPfamHits
name	hg/lib/mafGene.c	/^    char *name;$/;"	m	struct:exonInfo	file:
name	hg/lib/mafGene.c	/^    char *name;$/;"	m	struct:speciesInfo	file:
name	hg/lib/snoRNAs.h	/^    char *name;	\/* snoRNA RNA gene name *\/$/;"	m	struct:snoRNAs
name	inc/asParse.h	/^    char *name;			\/* Name of object. *\/$/;"	m	struct:asObject
name	inc/asParse.h	/^    char *name;                    \/* Column name. *\/$/;"	m	struct:asColumn
name	inc/asParse.h	/^    char *name;                    \/* Text ID of low level type. *\/$/;"	m	struct:asTypeInfo
name	inc/bamFile.h	/^    char *name;		\/* Chromosome name *\/$/;"	m	struct:bamChromInfo
name	inc/basicBed.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed
name	inc/basicBed.h	/^    char *name;	\/* Name of item *\/$/;"	m	struct:bed4
name	inc/bbiFile.h	/^    char *name;		\/* Chromosome name *\/$/;"	m	struct:bbiChromInfo
name	inc/bbiFile.h	/^    char *name;	\/* chromosome name. *\/$/;"	m	struct:bbiChromUsage
name	inc/cda.h	/^    char *name;$/;"	m	struct:cdaAli
name	inc/cheapcgi.h	/^    char *name;			\/* Name - allocated in hash. *\/$/;"	m	struct:cgiVar
name	inc/cheapcgi.h	/^    char *name;$/;"	m	struct:cgiChoice
name	inc/common.h	/^    char *name;			\/* Name of item. *\/$/;"	m	struct:slPair
name	inc/common.h	/^    char name[1];               \/* Allocated at run time to length of string. *\/$/;"	m	struct:slName
name	inc/diGraph.h	/^    char *name;            \/* Name of node (allocated in hash). *\/$/;"	m	struct:dgNode
name	inc/dnaMotif.h	/^    char *name; \/* Motif name. *\/$/;"	m	struct:dnaMotif
name	inc/dnaseq.h	/^    char *name;           \/* Name of sequence. *\/$/;"	m	struct:dnaSeq
name	inc/dtdParse.h	/^    char *name;			\/* Element Name. *\/$/;"	m	struct:dtdElement
name	inc/dtdParse.h	/^    char *name;			\/* Name of attribute. *\/$/;"	m	struct:dtdAttribute
name	inc/dtdParse.h	/^   char *name;			\/* Name of element. *\/$/;"	m	struct:dtdElChild
name	inc/gdf.h	/^    char *name;$/;"	m	struct:gdfGene
name	inc/gfPcrLib.h	/^    char *name;			\/* Name of experiment. *\/$/;"	m	struct:gfPcrOutput
name	inc/gfPcrLib.h	/^    char *name;	\/* Name of experiment *\/$/;"	m	struct:gfPcrInput
name	inc/gfWebLib.h	/^    char *name;		\/* Name user sees. *\/$/;"	m	struct:gfServerAt
name	inc/gff.h	/^    char *name;	  \/* Name, not allocated here. *\/$/;"	m	struct:gffFeature
name	inc/gff.h	/^    char *name;	  \/* Name, not allocated here. *\/$/;"	m	struct:gffSource
name	inc/gff.h	/^    char *name;     \/* Name of group. Not allocated here. *\/$/;"	m	struct:gffGroup
name	inc/gff.h	/^    char *name;   \/* Name, not allocated here. *\/$/;"	m	struct:gffGeneId
name	inc/gff.h	/^    char *name;   \/* Name, not allocated here. *\/$/;"	m	struct:gffSeqName
name	inc/gff3.h	/^    char *name;  \/* Display name for the feature.  This is the name to be$/;"	m	struct:gff3Ann
name	inc/hash.h	/^    char *name;$/;"	m	struct:hashEl
name	inc/hgGene.h	/^    char *name;	\/* Name of gene *\/$/;"	m	struct:hgGene
name	inc/hgGene.h	/^    char *name;	\/* Name of gene finder *\/$/;"	m	struct:geneFinder
name	inc/hgGene.h	/^    char *name;	\/* Name of transcript *\/$/;"	m	struct:hgTranscript
name	inc/hgap.h	/^    char name[16];            \/* GenBank accession. *\/$/;"	m	struct:hgBac
name	inc/hgap.h	/^    char name[20];            \/* Name like AC000007.24 *\/$/;"	m	struct:hgContig
name	inc/hmmPfamParse.h	/^    char *name;	\/* Model name *\/$/;"	m	struct:hpfModel
name	inc/hmmPfamParse.h	/^    char *name;	\/* Query sequence name. *\/$/;"	m	struct:hpfResult
name	inc/htmlPage.h	/^    char *name;			\/* Cookie name. *\/$/;"	m	struct:htmlCookie
name	inc/htmlPage.h	/^    char *name;			\/* Name (n\/a if not defined).  Not allocated here. *\/$/;"	m	struct:htmlForm
name	inc/htmlPage.h	/^    char *name;			\/* Variable name.  Not allocated here.*\/$/;"	m	struct:htmlFormVar
name	inc/htmlPage.h	/^    char *name;		\/* Attribute name. *\/$/;"	m	struct:htmlAttribute
name	inc/htmlPage.h	/^    char *name;	\/* Tag name. *\/$/;"	m	struct:htmlTag
name	inc/nt4.h	/^    char *name;                 \/* Name of sequence. *\/$/;"	m	struct:nt4Seq
name	inc/oldGff.h	/^    char name[64];$/;"	m	struct:gffGene
name	inc/options.h	/^    char *name;      \/* option name *\/$/;"	m	struct:optionSpec
name	inc/pairHmm.h	/^    char *name;			\/* Name of state. *\/$/;"	m	struct:phmmState
name	inc/phyloTree.h	/^    char *name;		\/* name of this node *\/$/;"	m	struct:phyloName
name	inc/portable.h	/^    char name[1];	\/* Allocated at run time. *\/$/;"	m	struct:fileInfo
name	inc/seg.h	/^	char *name;					\/* Name of this segment list. *\/$/;"	m	struct:segBlock
name	inc/shaRes.h	/^    char *name;$/;"	m	struct:shaResNode
name	inc/trans3.h	/^     char *name;			\/* Name (not allocated here) *\/$/;"	m	struct:trans3
name	inc/twoBit.h	/^    char *name;			\/* Name - allocated in hash *\/$/;"	m	struct:twoBitIndex
name	inc/twoBit.h	/^    char *name;			\/* Name of sequence. *\/$/;"	m	struct:twoBit
name	inc/twoBit.h	/^    char *name;                 \/* name of sequence *\/$/;"	m	struct:twoBitSeqSpec
name	inc/vcf.h	/^    char *name;			\/\/ Variant name from ID column$/;"	m	struct:vcfRecord
name	inc/wormdna.h	/^    char *name;                 \/* Name of cDNA. *\/$/;"	m	struct:wormCdnaInfo
name	inc/wormdna.h	/^    char name[1];   \/* Allocated to fit. *\/$/;"	m	struct:wormFeature
name	inc/xa.h	/^    char *name;$/;"	m	struct:xaAli
name	jkOwnLib/xenbig.c	/^    char *name;$/;"	m	struct:contig	file:
name	lib/blastOut.c	/^    char *name;	    	    \/* Target name *\/$/;"	m	struct:targetHits	file:
name	lib/bwgCreate.c	/^    char *name;			\/* Chromosome name - not allocated here. *\/$/;"	m	struct:bedGraphChrom	file:
name	lib/crTree.c	/^    char *name;$/;"	m	struct:name32	file:
name	lib/dnautil.c	/^    char *name;$/;"	m	struct:aminoAcidTable	file:
name	lib/fof.c	/^    char *name;                  \/* Name of fof given to fofOpen. *\/$/;"	m	struct:fof	file:
name	lib/fof.c	/^    char name[1];   \/* Dynamically allocated to fit actual size. *\/$/;"	m	struct:fofRecord	file:
name	lib/log.c	/^    char *name;$/;"	m	struct:nameVal	file:
name	lib/portimpl.h	/^    char *name;$/;"	m	struct:webServerSpecific
name	lib/snofmake.c	/^    char *name;$/;"	m	struct:offsetList	file:
name2	hg/inc/genePred.h	/^    char *name2;                  \/* Secondary name. (e.g. name of gene), or$/;"	m	struct:genePred
name2Aliases	hg/lib/genePredReader.c	/^static char *name2Aliases[] =$/;"	v	file:
name2FieldSql	hg/lib/genePred.c	/^static char *name2FieldSql = $/;"	v	file:
name32	lib/crTree.c	/^struct name32$/;"	s	file:
name32Cmp	lib/crTree.c	/^static int name32Cmp(const void *va, const void *vb)$/;"	f	file:
name32Key	lib/crTree.c	/^static void name32Key(const void *va, char *keyBuf)$/;"	f	file:
name32Val	lib/crTree.c	/^static void *name32Val(const void *va)$/;"	f	file:
nameCount	hg/inc/stsInfo.h	/^    unsigned nameCount;	\/* Number of alias names *\/$/;"	m	struct:stsInfo
nameCount	hg/inc/stsInfo2.h	/^    unsigned nameCount;	\/* Number of alias names *\/$/;"	m	struct:stsInfo2
nameCount	hg/inc/stsInfoMouseNew.h	/^    unsigned nameCount;	\/* Number of alias *\/$/;"	m	struct:stsInfoMouseNew
nameCount	hg/inc/stsInfoRat.h	/^    unsigned nameCount;	\/* Number of alias *\/$/;"	m	struct:stsInfoRat
nameExtra	hg/inc/snp125.h	/^    char *nameExtra;    \/* additional text to be drawn with name in image *\/$/;"	m	struct:snp125Extended
nameField	hg/inc/hdb.h	/^    char nameField[HDB_MAX_FIELD_STRING];		\/* Name of item name field. *\/$/;"	m	struct:hTableInfo
nameFilter	hg/inc/bed.h	/^    enum stringFilterType nameFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::stringFilterType
nameForStrand	lib/blastOut.c	/^static char *nameForStrand(char strand)$/;"	f	file:
nameHash	hg/inc/chainNet.h	/^    struct hash *nameHash; 	\/* Hash of all strings in fillList. *\/$/;"	m	struct:chainNet	typeref:struct:chainNet::hash
nameHash	hg/lib/chainNetDbLoad.c	/^    struct hash *nameHash;	\/* Place to keep names. *\/$/;"	m	struct:cnlHelper	typeref:struct:cnlHelper::hash	file:
nameInCommaList	lib/obscure.c	/^boolean nameInCommaList(char *name, char *commaList)$/;"	f
nameInvert	hg/inc/bed.h	/^    boolean nameInvert;$/;"	m	struct:bedFilter
nameMap	hg/lib/itemAttr.c	/^    struct hash *nameMap;  \/* hash of items, indexed by name, multiple$/;"	m	struct:itemAttrTbl	typeref:struct:itemAttrTbl::hash	file:
nameOrDefault	hg/lib/vcfUi.c	/^INLINE char *nameOrDefault(char *thisName, char *defaultVal)$/;"	f
nameSyns	hg/inc/hgnc.h	/^    char *nameSyns;	\/* Name synonyms *\/$/;"	m	struct:hgnc
nameVal	lib/log.c	/^struct nameVal$/;"	s	file:
nameValTblFind	lib/log.c	/^static int nameValTblFind(struct nameVal *tbl, char *name)$/;"	f	file:
nameValTblMsg	lib/log.c	/^static char *nameValTblMsg(struct nameVal *tbl)$/;"	f	file:
nameVals	hg/inc/bed.h	/^    char **nameVals;$/;"	m	struct:bedFilter
namedSessionTable	hg/inc/cart.h	449;"	d
names	hg/inc/microarray.h	/^    char **names;$/;"	m	struct:maGrouping
names	hg/lib/hui.c	/^    char**names;$/;"	m	struct:_dimensions	file:
navail_bytes	lib/gifdecomp.c	/^static WORD navail_bytes = 0;              \/* # bytes left in block *\/$/;"	v	file:
nbits_left	lib/gifdecomp.c	/^static WORD nbits_left = 0;                \/* # bits left in current byte *\/$/;"	v	file:
ncRna	hg/inc/ncRna.h	/^struct ncRna$/;"	s
ncRnaCommaIn	hg/lib/ncRna.c	/^struct ncRna *ncRnaCommaIn(char **pS, struct ncRna *ret)$/;"	f
ncRnaCommaOut	hg/inc/ncRna.h	65;"	d
ncRnaFree	hg/lib/ncRna.c	/^void ncRnaFree(struct ncRna **pEl)$/;"	f
ncRnaFreeList	hg/lib/ncRna.c	/^void ncRnaFreeList(struct ncRna **pList)$/;"	f
ncRnaLoad	hg/lib/ncRna.c	/^struct ncRna *ncRnaLoad(char **row)$/;"	f
ncRnaLoadAll	hg/lib/ncRna.c	/^struct ncRna *ncRnaLoadAll(char *fileName) $/;"	f
ncRnaLoadAllByChar	hg/lib/ncRna.c	/^struct ncRna *ncRnaLoadAllByChar(char *fileName, char chopper) $/;"	f
ncRnaLoadAllByTab	hg/inc/ncRna.h	43;"	d
ncRnaOutput	hg/lib/ncRna.c	/^void ncRnaOutput(struct ncRna *el, FILE *f, char sep, char lastSep) $/;"	f
ncRnaStaticLoad	hg/lib/ncRna.c	/^void ncRnaStaticLoad(char **row, struct ncRna *ret)$/;"	f
ncRnaTabOut	hg/inc/ncRna.h	62;"	d
nc_transcript_variant	hg/inc/soterm.h	/^    nc_transcript_variant=1619,$/;"	e	enum:__anon11
ncbiBlastOut	lib/blastOut.c	/^static void ncbiBlastOut(struct axtBundle *abList, int queryIx, boolean isProt, $/;"	f	file:
ncbiPrintE	lib/blastOut.c	/^static void ncbiPrintE(FILE *f, double e)$/;"	f	file:
nchars	lib/mafScore.c	/^static const uchar nchars[] = "ACGT";$/;"	v	file:
nci60All	hg/inc/hui.h	/^   nci60All = 1,$/;"	e	enum:nci60OptEnum
nci60Breast	hg/inc/hui.h	/^   nci60Breast = 2,$/;"	e	enum:nci60OptEnum
nci60Cns	hg/inc/hui.h	/^   nci60Cns = 3,$/;"	e	enum:nci60OptEnum
nci60Colon	hg/inc/hui.h	/^   nci60Colon = 4,$/;"	e	enum:nci60OptEnum
nci60DropDown	hg/lib/hui.c	/^void nci60DropDown(char *var, char *curVal)$/;"	f
nci60Duplicates	hg/inc/hui.h	/^   nci60Duplicates = 11,$/;"	e	enum:nci60OptEnum
nci60EnumToString	hg/lib/hui.c	/^char *nci60EnumToString(enum nci60OptEnum x)$/;"	f
nci60Leukemia	hg/inc/hui.h	/^   nci60Leukemia = 5,$/;"	e	enum:nci60OptEnum
nci60Melanoma	hg/inc/hui.h	/^   nci60Melanoma = 6,$/;"	e	enum:nci60OptEnum
nci60Nsclc	hg/inc/hui.h	/^   nci60Nsclc = 10,$/;"	e	enum:nci60OptEnum
nci60OptEnum	hg/inc/hui.h	/^enum nci60OptEnum {$/;"	g
nci60Options	hg/lib/hui.c	/^static char *nci60Options[] = {$/;"	v	file:
nci60Ovary	hg/inc/hui.h	/^   nci60Ovary = 7,$/;"	e	enum:nci60OptEnum
nci60Prostate	hg/inc/hui.h	/^   nci60Prostate = 8,$/;"	e	enum:nci60OptEnum
nci60Renal	hg/inc/hui.h	/^   nci60Renal = 9,$/;"	e	enum:nci60OptEnum
nci60StringToEnum	hg/lib/hui.c	/^enum nci60OptEnum nci60StringToEnum(char *string)$/;"	f
nci60Tissue	hg/inc/hui.h	/^   nci60Tissue = 0,$/;"	e	enum:nci60OptEnum
nci60Unknown	hg/inc/hui.h	/^   nci60Unknown = 12$/;"	e	enum:nci60OptEnum
ncol	hg/lib/microarray.c	/^    int ncol;$/;"	m	struct:maExpDataMatrix	file:
ncol	hg/lib/microarray.c	/^    int ncol;$/;"	m	struct:mapArray	file:
needHeader	lib/annoFormatTab.c	/^    boolean needHeader;			\/\/ TRUE if we should print out the header$/;"	m	struct:annoFormatTab	file:
needHugeMem	lib/memalloc.c	/^void *needHugeMem(size_t size)$/;"	f
needHugeMemResize	lib/memalloc.c	/^void *needHugeMemResize(void* vp, size_t size)$/;"	f
needHugeZeroedMem	lib/memalloc.c	/^void *needHugeZeroedMem(size_t size)$/;"	f
needHugeZeroedMemResize	lib/memalloc.c	/^void *needHugeZeroedMemResize(void* vp, size_t oldSize, size_t newSize)$/;"	f
needLargeMem	lib/memalloc.c	/^void *needLargeMem(size_t size)$/;"	f
needLargeMemResize	lib/memalloc.c	/^void *needLargeMemResize(void* vp, size_t size)$/;"	f
needLargeZeroedMem	lib/memalloc.c	/^void *needLargeZeroedMem(size_t size)$/;"	f
needLargeZeroedMemResize	lib/memalloc.c	/^void *needLargeZeroedMemResize(void* vp, size_t oldSize, size_t newSize)$/;"	f
needLineStartingWith	lib/hmmPfamParse.c	/^char *needLineStartingWith(struct lineFile *lf, char *start, int maxCount)$/;"	f
needMem	lib/memalloc.c	/^void *needMem(size_t size)$/;"	f
needMoreMem	lib/memalloc.c	/^void *needMoreMem(void *old, size_t oldSize, size_t newSize)$/;"	f
needNextWord	lib/dtdParse.c	/^static char *needNextWord(char **pLine, struct lineFile *lf)$/;"	f	file:
needQuotedString	lib/dtdParse.c	/^void needQuotedString( char *in, char *out, struct lineFile *lf, char **retNext)$/;"	f
needle	inc/seqOut.h	/^    DNA *needle, *haystack;$/;"	m	struct:baf
needsLift	hg/inc/customTrack.h	/^    boolean needsLift;		\/* True if coordinates need lifting. *\/$/;"	m	struct:customTrack
negParenNum	hg/lib/rmskOut.c	/^static int negParenNum(struct lineFile *lf, char *s)$/;"	f	file:
nest	inc/hgap.h	/^    struct hgNest *nest;      \/* Coordinate space. *\/$/;"	m	struct:hgBac	typeref:struct:hgBac::hgNest
nest	inc/hgap.h	/^    struct hgNest *nest;      \/* Coordinate space. *\/$/;"	m	struct:hgContig	typeref:struct:hgContig::hgNest
netAccept	lib/net.c	/^int netAccept(int sd)$/;"	f
netAcceptFrom	lib/net.c	/^int netAcceptFrom(int acceptor, unsigned char subnet[4])$/;"	f
netAcceptingSocket	lib/net.c	/^int netAcceptingSocket(int port, int queueSize)$/;"	f
netAcceptingSocketFrom	lib/net.c	/^int netAcceptingSocketFrom(int port, int queueSize, char *host)$/;"	f
netAlign	hg/inc/netAlign.h	/^struct netAlign$/;"	s
netAlignCfgUi	hg/lib/hui.c	/^void netAlignCfgUi(char *db, struct cart *cart, struct trackDb *tdb, char *prefix, char *title, boolean boxed)$/;"	f
netAlignCommaIn	hg/lib/netAlign.c	/^struct netAlign *netAlignCommaIn(char **pS, struct netAlign *ret)$/;"	f
netAlignCommaOut	hg/inc/netAlign.h	69;"	d
netAlignFree	hg/lib/netAlign.c	/^void netAlignFree(struct netAlign **pEl)$/;"	f
netAlignFreeList	hg/lib/netAlign.c	/^void netAlignFreeList(struct netAlign **pList)$/;"	f
netAlignLoad	hg/lib/netAlign.c	/^struct netAlign *netAlignLoad(char **row)$/;"	f
netAlignLoadAll	hg/lib/netAlign.c	/^struct netAlign *netAlignLoadAll(char *fileName) $/;"	f
netAlignOutput	hg/lib/netAlign.c	/^void netAlignOutput(struct netAlign *el, FILE *f, char sep, char lastSep) $/;"	f
netAlignStaticLoad	hg/lib/netAlign.c	/^void netAlignStaticLoad(char **row, struct netAlign *ret)$/;"	f
netAlignTabOut	hg/inc/netAlign.h	66;"	d
netBlockBrokenPipes	lib/net.c	/^void netBlockBrokenPipes()$/;"	f
netColorChromColors	hg/inc/hui.h	/^   netColorChromColors = 0,$/;"	e	enum:netColorEnum
netColorDropDown	hg/lib/hui.c	/^void netColorDropDown(char *var, char *curVal)$/;"	f
netColorEnum	hg/inc/hui.h	/^enum netColorEnum {$/;"	g
netColorEnumToString	hg/lib/hui.c	/^char *netColorEnumToString(enum netColorEnum x)$/;"	f
netColorGrayScale	hg/inc/hui.h	/^   netColorGrayScale = 1,$/;"	e	enum:netColorEnum
netColorOptions	hg/lib/hui.c	/^static char *netColorOptions[] = {$/;"	v	file:
netColorStringToEnum	hg/lib/hui.c	/^enum netColorEnum netColorStringToEnum(char *string)$/;"	f
netConnect	lib/net.c	/^int netConnect(char *hostName, int port)$/;"	f
netConnectFtpParams	lib/net.c	/^struct netConnectFtpParams$/;"	s	file:
netConnectHttps	lib/https.c	/^int netConnectHttps(char *hostName, int port)$/;"	f
netConnectHttpsParams	lib/https.c	/^struct netConnectHttpsParams$/;"	s	file:
netConnectHttpsThread	lib/https.c	/^void *netConnectHttpsThread(void *threadParam)$/;"	f
netConnectWithTimeout	lib/net.c	/^static int netConnectWithTimeout(char *hostName, int port, long msTimeout)$/;"	f	file:
netFetchColorOption	hg/lib/netCart.c	/^enum netColorEnum netFetchColorOption(struct cart *cart, struct trackDb *tdb,$/;"	f
netFetchLevelOption	hg/lib/netCart.c	/^enum netLevelEnum netFetchLevelOption(struct cart *cart, struct trackDb *tdb,$/;"	f
netFileFromSocket	lib/net.c	/^FILE *netFileFromSocket(int socket)$/;"	f
netFillToAxt	hg/lib/axtLib.c	/^struct axt *netFillToAxt(struct cnFill *fill, struct dnaSeq *tChrom , int tSize,$/;"	f
netGetFtpInfo	lib/net.c	/^boolean netGetFtpInfo(char *url, long long *retSize, time_t *retTime)$/;"	f
netGetHugeString	lib/net.c	/^char *netGetHugeString(int sd)$/;"	f
netGetLongString	lib/net.c	/^char *netGetLongString(int sd)$/;"	f
netGetOpenFtpSockets	lib/net.c	/^static int netGetOpenFtpSockets(char *url, int *retCtrlSd)$/;"	f	file:
netGetOpenHttp	lib/net.c	/^static int netGetOpenHttp(char *url)$/;"	f	file:
netGetString	lib/net.c	/^char *netGetString(int sd, char buf[256])$/;"	f
netHttpConnect	lib/net.c	/^int netHttpConnect(char *url, char *method, char *protocol, char *agent, char *optionalHeader)$/;"	f
netHttpGet	lib/net.c	/^void netHttpGet(struct lineFile *lf, struct netParsedUrl *npu,$/;"	f
netHttpGetMultiple	lib/net.c	/^int netHttpGetMultiple(char *url, struct slName *queries, void *userData,$/;"	f
netHttpLineFileMayOpen	lib/net.c	/^struct lineFile *netHttpLineFileMayOpen(char *url, struct netParsedUrl **npu)$/;"	f
netLevel0	hg/inc/hui.h	/^   netLevel0 = 0,$/;"	e	enum:netLevelEnum
netLevel1	hg/inc/hui.h	/^   netLevel1 = 1,$/;"	e	enum:netLevelEnum
netLevel2	hg/inc/hui.h	/^   netLevel2 = 2,$/;"	e	enum:netLevelEnum
netLevel3	hg/inc/hui.h	/^   netLevel3 = 3,$/;"	e	enum:netLevelEnum
netLevel4	hg/inc/hui.h	/^   netLevel4 = 4,$/;"	e	enum:netLevelEnum
netLevel5	hg/inc/hui.h	/^   netLevel5 = 5,$/;"	e	enum:netLevelEnum
netLevel6	hg/inc/hui.h	/^   netLevel6 = 6,$/;"	e	enum:netLevelEnum
netLevelDropDown	hg/lib/hui.c	/^void netLevelDropDown(char *var, char *curVal)$/;"	f
netLevelEnum	hg/inc/hui.h	/^enum netLevelEnum {$/;"	g
netLevelEnumToString	hg/lib/hui.c	/^char *netLevelEnumToString(enum netLevelEnum x)$/;"	f
netLevelOptions	hg/lib/hui.c	/^static char *netLevelOptions[] = {$/;"	v	file:
netLevelStringToEnum	hg/lib/hui.c	/^enum netLevelEnum netLevelStringToEnum(char *string)$/;"	f
netLineFileMayOpen	lib/net.c	/^struct lineFile *netLineFileMayOpen(char *url)$/;"	f
netLineFileOpen	lib/net.c	/^struct lineFile *netLineFileOpen(char *url)$/;"	f
netLineFileSilentOpen	lib/net.c	/^struct lineFile *netLineFileSilentOpen(char *url)$/;"	f
netMustConnect	lib/net.c	/^int netMustConnect(char *hostName, int port)$/;"	f
netMustConnectTo	lib/net.c	/^int netMustConnectTo(char *hostName, char *portName)$/;"	f
netMustReadAll	lib/net.c	/^int netMustReadAll(int sd, void *vBuf, size_t size)$/;"	f
netOpenHttpExt	lib/net.c	/^int netOpenHttpExt(char *url, char *method, char *optionalHeader)$/;"	f
netParseSubnet	lib/net.c	/^void netParseSubnet(char *in, unsigned char out[4])$/;"	f
netParseUrl	lib/net.c	/^void netParseUrl(char *url, struct netParsedUrl *parsed)$/;"	f
netParsedUrl	inc/net.h	/^struct netParsedUrl$/;"	s
netReadAll	lib/net.c	/^size_t netReadAll(int sd, void *vBuf, size_t size)$/;"	f
netReadTextFileIfExists	lib/net.c	/^char *netReadTextFileIfExists(char *url)$/;"	f
netRecieveHugeString	lib/net.c	/^char *netRecieveHugeString(int sd)$/;"	f
netRecieveLongString	lib/net.c	/^char *netRecieveLongString(int sd)$/;"	f
netRecieveString	lib/net.c	/^char *netRecieveString(int sd, char buf[256])$/;"	f
netSendHugeString	lib/net.c	/^boolean netSendHugeString(int sd, char *s)$/;"	f
netSendLongString	lib/net.c	/^boolean netSendLongString(int sd, char *s)$/;"	f
netSendString	lib/net.c	/^boolean netSendString(int sd, char *s)$/;"	f
netSkipHttpHeaderLinesHandlingRedirect	lib/net.c	/^boolean netSkipHttpHeaderLinesHandlingRedirect(int sd, char *url, int *redirectedSd, char **redirectedUrl)$/;"	f
netSkipHttpHeaderLinesWithRedirect	lib/net.c	/^boolean netSkipHttpHeaderLinesWithRedirect(int sd, char *url, char **redirectedUrl)$/;"	f
netSlurpFile	lib/net.c	/^struct dyString *netSlurpFile(int sd)$/;"	f
netSlurpUrl	lib/net.c	/^struct dyString *netSlurpUrl(char *url)$/;"	f
netStreamSocket	lib/net.c	/^static int netStreamSocket()$/;"	f	file:
netUrlHead	lib/net.c	/^int netUrlHead(char *url, struct hash *hash)$/;"	f
netUrlHeadExt	lib/net.c	/^int netUrlHeadExt(char *url, char *method, struct hash *hash)$/;"	f
netUrlOpen	lib/net.c	/^int netUrlOpen(char *url)$/;"	f
netUrlOpenSockets	lib/net.c	/^int netUrlOpenSockets(char *url, int *retCtrlSocket)$/;"	f
netUrlSizeByRangeResponse	lib/net.c	/^long long netUrlSizeByRangeResponse(char *url)$/;"	f
networkErrMsg	hg/inc/customTrack.h	/^    char *networkErrMsg;        \/* Network error message *\/$/;"	m	struct:customTrack
newAlignmentHash	hg/lib/ggGraph.c	/^struct hash *newAlignmentHash(struct ggMrnaCluster *mc)$/;"	f
newBedUiData	hg/lib/hui.c	/^struct mrnaUiData *newBedUiData(char *track)$/;"	f
newBlock	lib/localmem.c	/^static struct lmBlock *newBlock(struct lm *lm, size_t reqSize)$/;"	f	file:
newClump	jkOwnLib/patSpace.c	/^static struct patClump *newClump(struct patSpace *ps, struct blockPos *first, struct blockPos *last)$/;"	f	file:
newDlList	lib/dlist.c	/^struct dlList *newDlList()$/;"	f
newDnaSeq	lib/dnaseq.c	/^struct dnaSeq *newDnaSeq(DNA *dna, int size, char *name)$/;"	f
newDyString	lib/dystring.c	/^struct dyString *newDyString(int initialBufSize)$/;"	f
newEdge	lib/phyloTree.c	/^static struct phyloTree *newEdge(struct phyloTree *parent, struct phyloTree *child)$/;"	f	file:
newEmptyMrnaUiData	hg/lib/hui.c	/^static struct mrnaUiData *newEmptyMrnaUiData(char *track)$/;"	f	file:
newFileInfo	lib/osunix.c	/^struct fileInfo *newFileInfo(char *name, off_t size, bool isDir, int statErrno, $/;"	f
newFofRecEl	lib/fof.c	/^struct fofRecList *newFofRecEl(int fileIx, long offset, long size, char *name, int nameLen)$/;"	f
newGdfGene	lib/gdf.c	/^struct gdfGene *newGdfGene(char *name, int nameSize, int exonCount, char strand, UBYTE chromIx)$/;"	f
newHash	inc/hash.h	228;"	d
newHashExt	lib/hash.c	/^struct hash *newHashExt(int powerOfTwoSize, boolean useLocalMem)$/;"	f
newId	hg/inc/kg1ToKg2.h	/^    char *newId;	\/* New gene ID, may be empty *\/$/;"	m	struct:kg1ToKg2
newJsonBoolean	hg/lib/jsHelper.c	/^struct jsonElement *newJsonBoolean(boolean val)$/;"	f
newJsonDouble	hg/lib/jsHelper.c	/^struct jsonElement *newJsonDouble(double val)$/;"	f
newJsonElement	hg/lib/jsHelper.c	/^static struct jsonElement *newJsonElement(jsonElementType type)$/;"	f	file:
newJsonList	hg/lib/jsHelper.c	/^struct jsonElement *newJsonList(struct slRef *list)$/;"	f
newJsonNumber	hg/lib/jsHelper.c	/^struct jsonElement *newJsonNumber(long val)$/;"	f
newJsonObject	hg/lib/jsHelper.c	/^struct jsonElement *newJsonObject(struct hash *h)$/;"	f
newJsonString	hg/lib/jsHelper.c	/^struct jsonElement *newJsonString(char *str)$/;"	f
newKvt	lib/keys.c	/^struct kvt *newKvt(int size)$/;"	f
newMrnaUiData	hg/lib/hui.c	/^struct mrnaUiData *newMrnaUiData(char *track, boolean isXeno)$/;"	f
newName	hg/inc/liftUp.h	/^    char *newName;		\/* Name in dest file. *\/$/;"	m	struct:liftSpec
newNt4	lib/nt4.c	/^struct nt4Seq *newNt4(DNA *dna, int size, char *name)$/;"	f
newOffset	lib/snofmake.c	/^static struct offsetList *newOffset(char *name, int nameLen)$/;"	f	file:
newPatSpace	jkOwnLib/patSpace.c	/^static struct patSpace *newPatSpace(int minMatch, int maxGap, int seedSize)$/;"	f	file:
newQuickHeap	lib/quickHeap.c	/^struct quickHeap *newQuickHeap(int initSize, $/;"	f
newRelease	hg/inc/bdgpExprLink.h	/^    char newRelease;	\/* 'Y' if this gene is a new release *\/$/;"	m	struct:bdgpExprLink
newScore	jkOwnLib/xensmall.c	261;"	d	file:
newScore	jkOwnLib/xensmall.c	463;"	d	file:
newScore	lib/axtAffine.c	183;"	d	file:
newScore	lib/axtAffine.c	57;"	d	file:
newSize	hg/inc/liftUp.h	/^    int newSize;                   \/* Size of new sequence. *\/$/;"	m	struct:liftSpec
newSlDouble	inc/common.h	482;"	d
newSlInt	inc/common.h	451;"	d
newSlName	lib/common.c	/^struct slName *newSlName(char *name)$/;"	f
newSpDisplayId	hg/lib/spDb.c	/^char *newSpDisplayId(char *oldSpDisplayId)$/;"	f
newWormFeature	lib/wormdna.c	/^struct wormFeature *newWormFeature(char *name, char *chrom, int start, int end, char typeByte)$/;"	f
newcodes	lib/gifdecomp.c	/^static WORD newcodes;                      \/* First available code *\/$/;"	v	file:
next	hg/inc/HInv.h	/^    struct HInv *next;  \/* Next in singly linked list. *\/$/;"	m	struct:HInv	typeref:struct:HInv::HInv
next	hg/inc/acemblyClass.h	/^    struct acemblyClass *next;  \/* Next in singly linked list. *\/$/;"	m	struct:acemblyClass	typeref:struct:acemblyClass::acemblyClass
next	hg/inc/affy10K.h	/^    struct affy10K *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affy10K	typeref:struct:affy10K::affy10K
next	hg/inc/affy10KDetails.h	/^    struct affy10KDetails *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affy10KDetails	typeref:struct:affy10KDetails::affy10KDetails
next	hg/inc/affy120KDetails.h	/^    struct affy120KDetails *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affy120KDetails	typeref:struct:affy120KDetails::affy120KDetails
next	hg/inc/affyAllExonProbe.h	/^    struct affyAllExonProbe *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affyAllExonProbe	typeref:struct:affyAllExonProbe::affyAllExonProbe
next	hg/inc/affyAtlas.h	/^    struct affyAtlas *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affyAtlas	typeref:struct:affyAtlas::affyAtlas
next	hg/inc/affyGenoDetails.h	/^    struct affyGenoDetails *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affyGenoDetails	typeref:struct:affyGenoDetails::affyGenoDetails
next	hg/inc/affyOffset.h	/^    struct affyOffset *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affyOffset	typeref:struct:affyOffset::affyOffset
next	hg/inc/affyPairs.h	/^    struct affyPairs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affyPairs	typeref:struct:affyPairs::affyPairs
next	hg/inc/affyTransLifted.h	/^    struct affyTransLifted *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affyTransLifted	typeref:struct:affyTransLifted::affyTransLifted
next	hg/inc/affyTranscriptome.h	/^    struct affyTranscriptome *next;  \/* Next in singly linked list. *\/$/;"	m	struct:affyTranscriptome	typeref:struct:affyTranscriptome::affyTranscriptome
next	hg/inc/agp.h	/^    struct agp *next;$/;"	m	struct:agp	typeref:struct:agp::agp
next	hg/inc/agpFrag.h	/^    struct agpFrag *next;  \/* Next in singly linked list. *\/$/;"	m	struct:agpFrag	typeref:struct:agpFrag::agpFrag
next	hg/inc/agpGap.h	/^    struct agpGap *next;  \/* Next in singly linked list. *\/$/;"	m	struct:agpGap	typeref:struct:agpGap::agpGap
next	hg/inc/alignInfo.h	/^    struct alignInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:alignInfo	typeref:struct:alignInfo::alignInfo
next	hg/inc/alleleFreqs.h	/^    struct alleleFreqs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:alleleFreqs	typeref:struct:alleleFreqs::alleleFreqs
next	hg/inc/allpredictions.h	/^    struct allpredictions *next;  \/* Next in singly linked list. *\/$/;"	m	struct:allpredictions	typeref:struct:allpredictions::allpredictions
next	hg/inc/altGraph.h	/^    struct altGraph *next;  \/* Next in singly linked list. *\/$/;"	m	struct:altGraph	typeref:struct:altGraph::altGraph
next	hg/inc/altGraphX.h	/^    struct altGraphX *next;  \/* Next in singly linked list. *\/$/;"	m	struct:altGraphX	typeref:struct:altGraphX::altGraphX
next	hg/inc/altGraphX.h	/^    struct evidence *next;  \/* Next in singly linked list. *\/$/;"	m	struct:evidence	typeref:struct:evidence::evidence
next	hg/inc/altGraphX.h	/^    struct spliceEdge *next;    \/* Next in list. *\/$/;"	m	struct:spliceEdge	typeref:struct:spliceEdge::spliceEdge
next	hg/inc/ancientRref.h	/^    struct ancientRref *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ancientRref	typeref:struct:ancientRref::ancientRref
next	hg/inc/arCOGs.h	/^    struct arCOGs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:arCOGs	typeref:struct:arCOGs::arCOGs
next	hg/inc/arcogdesc.h	/^    struct arcogdesc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:arcogdesc	typeref:struct:arcogdesc::arcogdesc
next	hg/inc/atomDb.h	/^    struct atom *next;  \/* Next in singly linked list. *\/$/;"	m	struct:atom	typeref:struct:atom::atom
next	hg/inc/axtInfo.h	/^    struct axtInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:axtInfo	typeref:struct:axtInfo::axtInfo
next	hg/inc/bacCloneAlias.h	/^    struct bacCloneAlias *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bacCloneAlias	typeref:struct:bacCloneAlias::bacCloneAlias
next	hg/inc/bacCloneXRef.h	/^    struct bacCloneXRef *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bacCloneXRef	typeref:struct:bacCloneXRef::bacCloneXRef
next	hg/inc/bacEndAlias.h	/^    struct bacEndAlias *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bacEndAlias	typeref:struct:bacEndAlias::bacEndAlias
next	hg/inc/bactigPos.h	/^    struct bactigPos *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bactigPos	typeref:struct:bactigPos::bactigPos
next	hg/inc/bdgpExprLink.h	/^    struct bdgpExprLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bdgpExprLink	typeref:struct:bdgpExprLink::bdgpExprLink
next	hg/inc/bdgpGeneInfo.h	/^    struct bdgpGeneInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bdgpGeneInfo	typeref:struct:bdgpGeneInfo::bdgpGeneInfo
next	hg/inc/bdgpSwissProt.h	/^    struct bdgpSwissProt *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bdgpSwissProt	typeref:struct:bdgpSwissProt::bdgpSwissProt
next	hg/inc/bed12Source.h	/^    struct bed12Source *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed12Source	typeref:struct:bed12Source::bed12Source
next	hg/inc/bed12wSeq.h	/^    struct bed12wSeq *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed12wSeq	typeref:struct:bed12wSeq::bed12wSeq
next	hg/inc/bed5FloatScore.h	/^    struct bed5FloatScore *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed5FloatScore	typeref:struct:bed5FloatScore::bed5FloatScore
next	hg/inc/bed5Pval.h	/^    struct bed5Pval *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed5Pval	typeref:struct:bed5Pval::bed5Pval
next	hg/inc/bed6FloatScore.h	/^    struct bed6FloatScore *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed6FloatScore	typeref:struct:bed6FloatScore::bed6FloatScore
next	hg/inc/bed8Attrs.h	/^    struct bed8Attrs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed8Attrs	typeref:struct:bed8Attrs::bed8Attrs
next	hg/inc/bedDetail.h	/^    struct bedDetail *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bedDetail	typeref:struct:bedDetail::bedDetail
next	hg/inc/bedGraph.h	/^    struct bedGraph *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bedGraph	typeref:struct:bedGraph::bedGraph
next	hg/inc/bgiGeneInfo.h	/^    struct bgiGeneInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bgiGeneInfo	typeref:struct:bgiGeneInfo::bgiGeneInfo
next	hg/inc/bgiGeneSnp.h	/^    struct bgiGeneSnp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bgiGeneSnp	typeref:struct:bgiGeneSnp::bgiGeneSnp
next	hg/inc/bgiSnp.h	/^    struct bgiSnp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bgiSnp	typeref:struct:bgiSnp::bgiSnp
next	hg/inc/blastTab.h	/^    struct blastTab *next;  \/* Next in singly linked list. *\/$/;"	m	struct:blastTab	typeref:struct:blastTab::blastTab
next	hg/inc/blastzNet.h	/^    struct blastzNet *next;  \/* Next in singly linked list. *\/$/;"	m	struct:blastzNet	typeref:struct:blastzNet::blastzNet
next	hg/inc/blatServers.h	/^    struct blatServers *next;  \/* Next in singly linked list. *\/$/;"	m	struct:blatServers	typeref:struct:blatServers::blatServers
next	hg/inc/borf.h	/^    struct borf *next;  \/* Next in singly linked list. *\/$/;"	m	struct:borf	typeref:struct:borf::borf
next	hg/inc/borkPseudoHom.h	/^    struct borkPseudoHom *next;  \/* Next in singly linked list. *\/$/;"	m	struct:borkPseudoHom	typeref:struct:borkPseudoHom::borkPseudoHom
next	hg/inc/cart.h	/^   struct cart *next;	\/* Next in list. *\/$/;"	m	struct:cart	typeref:struct:cart::cart
next	hg/inc/cartDb.h	/^    struct cartDb *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cartDb	typeref:struct:cartDb::cartDb
next	hg/inc/ccdsGeneMap.h	/^    struct ccdsGeneMap *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ccdsGeneMap	typeref:struct:ccdsGeneMap::ccdsGeneMap
next	hg/inc/ccdsInfo.h	/^    struct ccdsInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ccdsInfo	typeref:struct:ccdsInfo::ccdsInfo
next	hg/inc/ccdsNotes.h	/^    struct ccdsNotes *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ccdsNotes	typeref:struct:ccdsNotes::ccdsNotes
next	hg/inc/cddDesc.h	/^    struct cddDesc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cddDesc	typeref:struct:cddDesc::cddDesc
next	hg/inc/cddInfo.h	/^    struct cddInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cddInfo	typeref:struct:cddInfo::cddInfo
next	hg/inc/cdsEvidence.h	/^    struct cdsEvidence *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cdsEvidence	typeref:struct:cdsEvidence::cdsEvidence
next	hg/inc/cdsOrtho.h	/^    struct cdsOrtho *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cdsOrtho	typeref:struct:cdsOrtho::cdsOrtho
next	hg/inc/cdsPick.h	/^    struct cdsPick *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cdsPick	typeref:struct:cdsPick::cdsPick
next	hg/inc/cdsSpec.h	/^    struct cdsSpec *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cdsSpec	typeref:struct:cdsSpec::cdsSpec
next	hg/inc/celeraCoverage.h	/^    struct celeraCoverage *next;  \/* Next in singly linked list. *\/$/;"	m	struct:celeraCoverage	typeref:struct:celeraCoverage::celeraCoverage
next	hg/inc/celeraDupPositive.h	/^    struct celeraDupPositive *next;  \/* Next in singly linked list. *\/$/;"	m	struct:celeraDupPositive	typeref:struct:celeraDupPositive::celeraDupPositive
next	hg/inc/cgh.h	/^    struct cgh *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cgh	typeref:struct:cgh::cgh
next	hg/inc/chainGap.h	/^    struct chainGap *next;  \/* Next in singly linked list. *\/$/;"	m	struct:chainGap	typeref:struct:chainGap::chainGap
next	hg/inc/chainLink.h	/^    struct chainLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:chainLink	typeref:struct:chainLink::chainLink
next	hg/inc/chainNet.h	/^    struct chainNet *next;$/;"	m	struct:chainNet	typeref:struct:chainNet::chainNet
next	hg/inc/chainNet.h	/^    struct cnFill *next;	   \/* Next in list. *\/$/;"	m	struct:cnFill	typeref:struct:cnFill::cnFill
next	hg/inc/chainView.h	/^    struct chainView *next;	  	  \/* Next in list. *\/$/;"	m	struct:chainView	typeref:struct:chainView::chainView
next	hg/inc/chicken13kInfo.h	/^    struct chicken13kInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:chicken13kInfo	typeref:struct:chicken13kInfo::chicken13kInfo
next	hg/inc/chr18deletions.h	/^    struct chr18deletions *next;  \/* Next in singly linked list. *\/$/;"	m	struct:chr18deletions	typeref:struct:chr18deletions::chr18deletions
next	hg/inc/chromGraph.h	/^    struct cgbChrom *next;	\/* Next in list. *\/$/;"	m	struct:cgbChrom	typeref:struct:cgbChrom::cgbChrom
next	hg/inc/chromGraph.h	/^    struct chromGraph *next;  \/* Next in singly linked list. *\/$/;"	m	struct:chromGraph	typeref:struct:chromGraph::chromGraph
next	hg/inc/chromGraph.h	/^    struct chromGraphBin *next;	\/* Next in list if any *\/$/;"	m	struct:chromGraphBin	typeref:struct:chromGraphBin::chromGraphBin
next	hg/inc/chromInfo.h	/^    struct chromInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:chromInfo	typeref:struct:chromInfo::chromInfo
next	hg/inc/chromInserts.h	/^    struct bigInsert *next;	\/* Next in list. *\/$/;"	m	struct:bigInsert	typeref:struct:bigInsert::bigInsert
next	hg/inc/chromInserts.h	/^    struct chromInserts *next;	  \/* Next in list. *\/$/;"	m	struct:chromInserts	typeref:struct:chromInserts::chromInserts
next	hg/inc/clonePos.h	/^    struct clonePos *next;  \/* Next in singly linked list. *\/$/;"	m	struct:clonePos	typeref:struct:clonePos::clonePos
next	hg/inc/cnpIafrate.h	/^    struct cnpIafrate *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpIafrate	typeref:struct:cnpIafrate::cnpIafrate
next	hg/inc/cnpIafrate2.h	/^    struct cnpIafrate2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpIafrate2	typeref:struct:cnpIafrate2::cnpIafrate2
next	hg/inc/cnpLocke.h	/^    struct cnpLocke *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpLocke	typeref:struct:cnpLocke::cnpLocke
next	hg/inc/cnpRedon.h	/^    struct cnpRedon *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpRedon	typeref:struct:cnpRedon::cnpRedon
next	hg/inc/cnpSebat.h	/^    struct cnpSebat *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpSebat	typeref:struct:cnpSebat::cnpSebat
next	hg/inc/cnpSebat2.h	/^    struct cnpSebat2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpSebat2	typeref:struct:cnpSebat2::cnpSebat2
next	hg/inc/cnpSharp.h	/^    struct cnpSharp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpSharp	typeref:struct:cnpSharp::cnpSharp
next	hg/inc/cnpSharp2.h	/^    struct cnpSharp2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpSharp2	typeref:struct:cnpSharp2::cnpSharp2
next	hg/inc/cnpSharpCutoff.h	/^    struct cnpSharpCutoff *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpSharpCutoff	typeref:struct:cnpSharpCutoff::cnpSharpCutoff
next	hg/inc/cnpSharpSample.h	/^    struct cnpSharpSample *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cnpSharpSample	typeref:struct:cnpSharpSample::cnpSharpSample
next	hg/inc/codeBlast.h	/^    struct codeBlast *next;  \/* Next in singly linked list. *\/$/;"	m	struct:codeBlast	typeref:struct:codeBlast::codeBlast
next	hg/inc/codeBlastScore.h	/^    struct codeBlastScore *next;  \/* Next in singly linked list. *\/$/;"	m	struct:codeBlastScore	typeref:struct:codeBlastScore::codeBlastScore
next	hg/inc/cogs.h	/^    struct COG *next;  \/* Next in singly linked list. *\/$/;"	m	struct:COG	typeref:struct:COG::COG
next	hg/inc/cogsxra.h	/^    struct COGXra *next;  \/* Next in singly linked list. *\/$/;"	m	struct:COGXra	typeref:struct:COGXra::COGXra
next	hg/inc/columnInfo.h	/^    struct columnInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:columnInfo	typeref:struct:columnInfo::columnInfo
next	hg/inc/contigAcc.h	/^    struct contigAcc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:contigAcc	typeref:struct:contigAcc::contigAcc
next	hg/inc/coordConv.h	/^    struct coordConv *next;  \/** Next in singly linked list. *\/$/;"	m	struct:coordConv	typeref:struct:coordConv::coordConv
next	hg/inc/coordConv.h	/^    struct coordConvRep *next; \/** next in list *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::coordConvRep
next	hg/inc/cpgIsland.h	/^    struct cpgIsland *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cpgIsland	typeref:struct:cpgIsland::cpgIsland
next	hg/inc/cpgIslandExt.h	/^    struct cpgIslandExt *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cpgIslandExt	typeref:struct:cpgIslandExt::cpgIslandExt
next	hg/inc/ctgPos.h	/^    struct ctgPos *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ctgPos	typeref:struct:ctgPos::ctgPos
next	hg/inc/ctgPos2.h	/^    struct ctgPos2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ctgPos2	typeref:struct:ctgPos2::ctgPos2
next	hg/inc/customFactory.h	/^    struct customFactory *next;$/;"	m	struct:customFactory	typeref:struct:customFactory::customFactory
next	hg/inc/customPp.h	/^    struct customPp *next;	 \/* Next customPp in list *\/$/;"	m	struct:customPp	typeref:struct:customPp::customPp
next	hg/inc/customTrack.h	/^    struct customTrack *next;	\/* Next in list. *\/$/;"	m	struct:customTrack	typeref:struct:customTrack::customTrack
next	hg/inc/cutter.h	/^    struct cutter *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cutter	typeref:struct:cutter::cutter
next	hg/inc/cytoBand.h	/^    struct cytoBand *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cytoBand	typeref:struct:cytoBand::cytoBand
next	hg/inc/dbDb.h	/^    struct dbDb *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dbDb	typeref:struct:dbDb::dbDb
next	hg/inc/dbRIP.h	/^    struct dbRIP *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dbRIP	typeref:struct:dbRIP::dbRIP
next	hg/inc/dbSnpRs.h	/^    struct dbSnpRs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dbSnpRs	typeref:struct:dbSnpRs::dbSnpRs
next	hg/inc/defaultDb.h	/^    struct defaultDb *next;  \/* Next in singly linked list. *\/$/;"	m	struct:defaultDb	typeref:struct:defaultDb::defaultDb
next	hg/inc/delConrad2.h	/^    struct delConrad2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:delConrad2	typeref:struct:delConrad2::delConrad2
next	hg/inc/delHinds2.h	/^    struct delHinds2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:delHinds2	typeref:struct:delHinds2::delHinds2
next	hg/inc/dgv.h	/^    struct dgv *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dgv	typeref:struct:dgv::dgv
next	hg/inc/dless.h	/^    struct dless *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dless	typeref:struct:dless::dless
next	hg/inc/dnaProbe.h	/^    struct dnaProbe *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dnaProbe	typeref:struct:dnaProbe::dnaProbe
next	hg/inc/dv.h	/^    struct dv *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dv	typeref:struct:dv::dv
next	hg/inc/dvBed.h	/^    struct dvBed *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dvBed	typeref:struct:dvBed::dvBed
next	hg/inc/dvXref2.h	/^    struct dvXref2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dvXref2	typeref:struct:dvXref2::dvXref2
next	hg/inc/easyGene.h	/^    struct easyGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:easyGene	typeref:struct:easyGene::easyGene
next	hg/inc/ecAttribute.h	/^    struct ecAttribute *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ecAttribute	typeref:struct:ecAttribute::ecAttribute
next	hg/inc/ecAttributeCode.h	/^    struct ecAttributeCode *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ecAttributeCode	typeref:struct:ecAttributeCode::ecAttributeCode
next	hg/inc/ecCode.h	/^    struct ecCode *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ecCode	typeref:struct:ecCode::ecCode
next	hg/inc/ensInfo.h	/^    struct ensInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ensInfo	typeref:struct:ensInfo::ensInfo
next	hg/inc/ensPhusionBlast.h	/^    struct ensPhusionBlast *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ensPhusionBlast	typeref:struct:ensPhusionBlast::ensPhusionBlast
next	hg/inc/ensXRefZfish.h	/^    struct ensXRefZfish *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ensXRefZfish	typeref:struct:ensXRefZfish::ensXRefZfish
next	hg/inc/est3.h	/^    struct est3 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:est3	typeref:struct:est3::est3
next	hg/inc/estOrientInfo.h	/^    struct estOrientInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:estOrientInfo	typeref:struct:estOrientInfo::estOrientInfo
next	hg/inc/estPair.h	/^    struct estPair *next;  \/* Next in singly linked list. *\/$/;"	m	struct:estPair	typeref:struct:estPair::estPair
next	hg/inc/exoFish.h	/^    struct exoFish *next;  \/* Next in singly linked list. *\/$/;"	m	struct:exoFish	typeref:struct:exoFish::exoFish
next	hg/inc/expData.h	/^    struct expData *next;  \/* Next in singly linked list. *\/$/;"	m	struct:expData	typeref:struct:expData::expData
next	hg/inc/expRecord.h	/^    struct expRecord *next;  \/* Next in singly linked list. *\/$/;"	m	struct:expRecord	typeref:struct:expRecord::expRecord
next	hg/inc/exprBed.h	/^    struct exprBed *next;  \/* Next in singly linked list. *\/$/;"	m	struct:exprBed	typeref:struct:exprBed::exprBed
next	hg/inc/fbTables.h	/^    struct fbAllele *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbAllele	typeref:struct:fbAllele::fbAllele
next	hg/inc/fbTables.h	/^    struct fbGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbGene	typeref:struct:fbGene::fbGene
next	hg/inc/fbTables.h	/^    struct fbGo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbGo	typeref:struct:fbGo::fbGo
next	hg/inc/fbTables.h	/^    struct fbPhenotype *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbPhenotype	typeref:struct:fbPhenotype::fbPhenotype
next	hg/inc/fbTables.h	/^    struct fbRef *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbRef	typeref:struct:fbRef::fbRef
next	hg/inc/fbTables.h	/^    struct fbRole *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbRole	typeref:struct:fbRole::fbRole
next	hg/inc/fbTables.h	/^    struct fbSynonym *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbSynonym	typeref:struct:fbSynonym::fbSynonym
next	hg/inc/fbTables.h	/^    struct fbTranscript *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fbTranscript	typeref:struct:fbTranscript::fbTranscript
next	hg/inc/featureBits.h	/^    struct featureBits *next;$/;"	m	struct:featureBits	typeref:struct:featureBits::featureBits
next	hg/inc/fileUi.h	/^    struct fileDb *next;     \/\/ single link list$/;"	m	struct:fileDb	typeref:struct:fileDb::fileDb
next	hg/inc/fishClones.h	/^    struct fishClones *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fishClones	typeref:struct:fishClones::fishClones
next	hg/inc/flyBase2004Xref.h	/^    struct flyBase2004Xref *next;  \/* Next in singly linked list. *\/$/;"	m	struct:flyBase2004Xref	typeref:struct:flyBase2004Xref::flyBase2004Xref
next	hg/inc/flyBaseSwissProt.h	/^    struct flyBaseSwissProt *next;  \/* Next in singly linked list. *\/$/;"	m	struct:flyBaseSwissProt	typeref:struct:flyBaseSwissProt::flyBaseSwissProt
next	hg/inc/flyreg.h	/^    struct flyreg *next;  \/* Next in singly linked list. *\/$/;"	m	struct:flyreg	typeref:struct:flyreg::flyreg
next	hg/inc/flyreg2.h	/^    struct flyreg2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:flyreg2	typeref:struct:flyreg2::flyreg2
next	hg/inc/fosEndPairs.h	/^    struct fosEndPairs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fosEndPairs	typeref:struct:fosEndPairs::fosEndPairs
next	hg/inc/gbExtFile.h	/^    struct gbExtFile *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gbExtFile	typeref:struct:gbExtFile::gbExtFile
next	hg/inc/gbMiscDiff.h	/^    struct gbMiscDiff *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gbMiscDiff	typeref:struct:gbMiscDiff::gbMiscDiff
next	hg/inc/gbProtAnn.h	/^    struct gbProtAnn *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gbProtAnn	typeref:struct:gbProtAnn::gbProtAnn
next	hg/inc/gbRNAs.h	/^    struct gbRNAs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gbRNAs	typeref:struct:gbRNAs::gbRNAs
next	hg/inc/gbSeq.h	/^    struct gbSeq *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gbSeq	typeref:struct:gbSeq::gbSeq
next	hg/inc/gbWarn.h	/^    struct gbWarn *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gbWarn	typeref:struct:gbWarn::gbWarn
next	hg/inc/gcPercent.h	/^    struct gcPercent *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gcPercent	typeref:struct:gcPercent::gcPercent
next	hg/inc/genMapDb.h	/^    struct genMapDb *next;  \/* Next in singly linked list. *\/$/;"	m	struct:genMapDb	typeref:struct:genMapDb::genMapDb
next	hg/inc/genbankBlackList.h	/^struct blackListRange *next;$/;"	m	struct:blackListRange	typeref:struct:blackListRange::blackListRange
next	hg/inc/gencodeGeneClass.h	/^    struct gencodeGeneClass *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gencodeGeneClass	typeref:struct:gencodeGeneClass::gencodeGeneClass
next	hg/inc/gencodeIntron.h	/^    struct gencodeIntron *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gencodeIntron	typeref:struct:gencodeIntron::gencodeIntron
next	hg/inc/geneBands.h	/^    struct geneBands *next;  \/* Next in singly linked list. *\/$/;"	m	struct:geneBands	typeref:struct:geneBands::geneBands
next	hg/inc/geneCheck.h	/^    struct geneCheck *next;  \/* Next in singly linked list. *\/$/;"	m	struct:geneCheck	typeref:struct:geneCheck::geneCheck
next	hg/inc/geneCheckDetails.h	/^    struct geneCheckDetails *next;  \/* Next in singly linked list. *\/$/;"	m	struct:geneCheckDetails	typeref:struct:geneCheckDetails::geneCheckDetails
next	hg/inc/geneGraph.h	/^    struct geneGraph *next;		\/* Next in list. *\/$/;"	m	struct:geneGraph	typeref:struct:geneGraph::geneGraph
next	hg/inc/geneGraph.h	/^    struct ggAliInfo *next;   \/* Next in list. *\/$/;"	m	struct:ggAliInfo	typeref:struct:ggAliInfo::ggAliInfo
next	hg/inc/geneGraph.h	/^    struct ggEdge *next;       \/* Next in list. *\/$/;"	m	struct:ggEdge	typeref:struct:ggEdge::ggEdge
next	hg/inc/geneGraph.h	/^    struct ggEvidence *next;   \/* Next in list. *\/$/;"	m	struct:ggEvidence	typeref:struct:ggEvidence::ggEvidence
next	hg/inc/geneGraph.h	/^    struct ggMrnaCluster *next;             \/* Next in list. *\/$/;"	m	struct:ggMrnaCluster	typeref:struct:ggMrnaCluster::ggMrnaCluster
next	hg/inc/genePred.h	/^    struct genePred *next;  \/* Next in singly linked list. *\/$/;"	m	struct:genePred	typeref:struct:genePred::genePred
next	hg/inc/geneSimilarities.h	/^    struct geneSim *next;$/;"	m	struct:geneSim	typeref:struct:geneSim::geneSim
next	hg/inc/geneSimilarities.h	/^    struct geneSimilarities *next;$/;"	m	struct:geneSimilarities	typeref:struct:geneSimilarities::geneSimilarities
next	hg/inc/geneTree.h	/^    struct geneTree *next;  \/* Next in singly linked list. *\/$/;"	m	struct:geneTree	typeref:struct:geneTree::geneTree
next	hg/inc/genoLay.h	/^     struct genoLayChrom *next;$/;"	m	struct:genoLayChrom	typeref:struct:genoLayChrom::genoLayChrom
next	hg/inc/genomeRangeTreeFile.h	/^    struct genomeRangeTreeFile *next;$/;"	m	struct:genomeRangeTreeFile	typeref:struct:genomeRangeTreeFile::genomeRangeTreeFile
next	hg/inc/genomicDups.h	/^    struct genomicDups *next;  \/* Next in singly linked list. *\/$/;"	m	struct:genomicDups	typeref:struct:genomicDups::genomicDups
next	hg/inc/genomicSuperDups.h	/^    struct genomicSuperDups *next;  \/* Next in singly linked list. *\/$/;"	m	struct:genomicSuperDups	typeref:struct:genomicSuperDups::genomicSuperDups
next	hg/inc/genotype.h	/^    struct genotype *next;  \/* Next in singly linked list. *\/$/;"	m	struct:genotype	typeref:struct:genotype::genotype
next	hg/inc/genotypeFreqs.h	/^    struct genotypeFreqs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:genotypeFreqs	typeref:struct:genotypeFreqs::genotypeFreqs
next	hg/inc/ggDbRep.h	/^    struct altGraph *next;  \/* Next in singly linked list. *\/$/;"	m	struct:altGraph	typeref:struct:altGraph::altGraph
next	hg/inc/ggMrnaAli.h	/^    struct ggMrnaAli *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ggMrnaAli	typeref:struct:ggMrnaAli::ggMrnaAli
next	hg/inc/ggMrnaAli.h	/^    struct ggMrnaBlock *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ggMrnaBlock	typeref:struct:ggMrnaBlock::ggMrnaBlock
next	hg/inc/ggMrnaAli.h	/^    struct maRef *next;  \/* Next in list. *\/$/;"	m	struct:maRef	typeref:struct:maRef::maRef
next	hg/inc/ggPrivate.h	/^    struct clonePair *next;	\/* Next in list. *\/$/;"	m	struct:clonePair	typeref:struct:clonePair::clonePair
next	hg/inc/glDbRep.h	/^    struct gl *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gl	typeref:struct:gl::gl
next	hg/inc/goa.h	/^    struct goa *next;  \/* Next in singly linked list. *\/$/;"	m	struct:goa	typeref:struct:goa::goa
next	hg/inc/goaPart.h	/^    struct goaPart *next;  \/* Next in singly linked list. *\/$/;"	m	struct:goaPart	typeref:struct:goaPart::goaPart
next	hg/inc/gpFx.h	/^struct gpFx *next;$/;"	m	struct:gpFx	typeref:struct:gpFx::gpFx
next	hg/inc/growthCondition.h	/^    struct growthCondition *next;  \/* Next in singly linked list. *\/$/;"	m	struct:growthCondition	typeref:struct:growthCondition::growthCondition
next	hg/inc/grp.h	/^    struct grp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:grp	typeref:struct:grp::grp
next	hg/inc/gv.h	/^    struct gv *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gv	typeref:struct:gv::gv
next	hg/inc/gv.h	/^    struct gvAttr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gvAttr	typeref:struct:gvAttr::gvAttr
next	hg/inc/gv.h	/^    struct gvAttrLong *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gvAttrLong	typeref:struct:gvAttrLong::gvAttrLong
next	hg/inc/gv.h	/^    struct gvLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gvLink	typeref:struct:gvLink::gvLink
next	hg/inc/gv.h	/^    struct gvPos *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gvPos	typeref:struct:gvPos::gvPos
next	hg/inc/gv.h	/^    struct gvSrc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gvSrc	typeref:struct:gvSrc::gvSrc
next	hg/inc/gwasCatalog.h	/^    struct gwasCatalog *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gwasCatalog	typeref:struct:gwasCatalog::gwasCatalog
next	hg/inc/hapmapAlleleFreq.h	/^    struct hapmapAlleleFreq *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapAlleleFreq	typeref:struct:hapmapAlleleFreq::hapmapAlleleFreq
next	hg/inc/hapmapAlleles.h	/^    struct hapmapAlleles *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapAlleles	typeref:struct:hapmapAlleles::hapmapAlleles
next	hg/inc/hapmapAllelesCombined.h	/^    struct hapmapAllelesCombined *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapAllelesCombined	typeref:struct:hapmapAllelesCombined::hapmapAllelesCombined
next	hg/inc/hapmapAllelesOrtho.h	/^    struct hapmapAllelesOrtho *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapAllelesOrtho	typeref:struct:hapmapAllelesOrtho::hapmapAllelesOrtho
next	hg/inc/hapmapAllelesSummary.h	/^    struct hapmapAllelesSummary *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapAllelesSummary	typeref:struct:hapmapAllelesSummary::hapmapAllelesSummary
next	hg/inc/hapmapLd.h	/^    struct hapmapLd *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapLd	typeref:struct:hapmapLd::hapmapLd
next	hg/inc/hapmapPhaseIIISummary.h	/^    struct hapmapPhaseIIISummary *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapPhaseIIISummary	typeref:struct:hapmapPhaseIIISummary::hapmapPhaseIIISummary
next	hg/inc/hapmapPrimateAlleles.h	/^    struct hapmapPrimateAlleles *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapPrimateAlleles	typeref:struct:hapmapPrimateAlleles::hapmapPrimateAlleles
next	hg/inc/hapmapSnps.h	/^    struct hapmapSnps *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapSnps	typeref:struct:hapmapSnps::hapmapSnps
next	hg/inc/hapmapSnpsCombined.h	/^    struct hapmapSnpsCombined *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hapmapSnpsCombined	typeref:struct:hapmapSnpsCombined::hapmapSnpsCombined
next	hg/inc/hdb.h	/^    struct hTableInfo *next;	\/* Next in list. *\/$/;"	m	struct:hTableInfo	typeref:struct:hTableInfo::hTableInfo
next	hg/inc/hgFind.h	/^     struct hgPos *next;	\/* Next in list. *\/$/;"	m	struct:hgPos	typeref:struct:hgPos::hgPos
next	hg/inc/hgFind.h	/^    struct hgPosTable *next;	\/* Next table in list. *\/$/;"	m	struct:hgPosTable	typeref:struct:hgPosTable::hgPosTable
next	hg/inc/hgFind.h	/^    struct hgPositions *next;	  \/* Next in list. *\/$/;"	m	struct:hgPositions	typeref:struct:hgPositions::hgPositions
next	hg/inc/hgFindSpec.h	/^    struct hgFindSpec *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hgFindSpec	typeref:struct:hgFindSpec::hgFindSpec
next	hg/inc/hgGene.h	/^    struct geneFinder *next;  \/* Next in singly linked list. *\/$/;"	m	struct:geneFinder	typeref:struct:geneFinder::geneFinder
next	hg/inc/hgGene.h	/^    struct hgGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hgGene	typeref:struct:hgGene::hgGene
next	hg/inc/hgGene.h	/^    struct hgTranscript *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hgTranscript	typeref:struct:hgTranscript::hgTranscript
next	hg/inc/hgMaf.h	/^    struct consWiggle *next;    \/* Next in list *\/$/;"	m	struct:consWiggle	typeref:struct:consWiggle::consWiggle
next	hg/inc/hgMaf.h	/^    struct wigMafSpecies *next;$/;"	m	struct:wigMafSpecies	typeref:struct:wigMafSpecies::wigMafSpecies
next	hg/inc/hgdpGeo.h	/^    struct hgdpGeo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hgdpGeo	typeref:struct:hgdpGeo::hgdpGeo
next	hg/inc/hgnc.h	/^    struct hgnc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hgnc	typeref:struct:hgnc::hgnc
next	hg/inc/hubConnect.h	/^    struct hubConnectStatus *next;$/;"	m	struct:hubConnectStatus	typeref:struct:hubConnectStatus::hubConnectStatus
next	hg/inc/hui.h	/^    struct _filterBy *next;   \/\/ SL list$/;"	m	struct:_filterBy	typeref:struct:_filterBy::_filterBy
next	hg/inc/hui.h	/^    struct _sortColumn *next;$/;"	m	struct:_sortColumn	typeref:struct:_sortColumn::_sortColumn
next	hg/inc/hui.h	/^    struct _sortableTdbItem *next;$/;"	m	struct:_sortableTdbItem	typeref:struct:_sortableTdbItem::_sortableTdbItem
next	hg/inc/hui.h	/^    struct expdFilter *next;  \/* Next in list. *\/$/;"	m	struct:expdFilter	typeref:struct:expdFilter::expdFilter
next	hg/inc/hui.h	/^    struct extraField *next;$/;"	m	struct:extraField	typeref:struct:extraField::extraField
next	hg/inc/hui.h	/^   struct  mrnaFilter *next;	\/* Next in list. *\/$/;"	m	struct:mrnaFilter	typeref:struct:mrnaFilter::mrnaFilter
next	hg/inc/hui.h	/^   struct trackNameAndLabel *next;$/;"	m	struct:trackNameAndLabel	typeref:struct:trackNameAndLabel::trackNameAndLabel
next	hg/inc/humanParalog.h	/^    struct humanParalog *next;  \/* Next in singly linked list. *\/$/;"	m	struct:humanParalog	typeref:struct:humanParalog::humanParalog
next	hg/inc/hvGfx.h	/^    struct hvGfx *next;	     \/* Next in list. *\/$/;"	m	struct:hvGfx	typeref:struct:hvGfx::hvGfx
next	hg/inc/imageClone.h	/^    struct imageClone *next;  \/* Next in singly linked list. *\/$/;"	m	struct:imageClone	typeref:struct:imageClone::imageClone
next	hg/inc/isochores.h	/^    struct isochores *next;  \/* Next in singly linked list. *\/$/;"	m	struct:isochores	typeref:struct:isochores::isochores
next	hg/inc/ispyTables.h	/^    struct agi *next;  \/* Next in singly linked list. *\/$/;"	m	struct:agi	typeref:struct:agi::agi
next	hg/inc/ispyTables.h	/^    struct cdna *next;  \/* Next in singly linked list. *\/$/;"	m	struct:cdna	typeref:struct:cdna::cdna
next	hg/inc/ispyTables.h	/^    struct chemo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:chemo	typeref:struct:chemo::chemo
next	hg/inc/ispyTables.h	/^    struct fish *next;  \/* Next in singly linked list. *\/$/;"	m	struct:fish	typeref:struct:fish::fish
next	hg/inc/ispyTables.h	/^    struct followUp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:followUp	typeref:struct:followUp::followUp
next	hg/inc/ispyTables.h	/^    struct ihc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ihc	typeref:struct:ihc::ihc
next	hg/inc/ispyTables.h	/^    struct labTrack *next;  \/* Next in singly linked list. *\/$/;"	m	struct:labTrack	typeref:struct:labTrack::labTrack
next	hg/inc/ispyTables.h	/^    struct mr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mr	typeref:struct:mr::mr
next	hg/inc/ispyTables.h	/^    struct onStudy *next;  \/* Next in singly linked list. *\/$/;"	m	struct:onStudy	typeref:struct:onStudy::onStudy
next	hg/inc/ispyTables.h	/^    struct patient *next;  \/* Next in singly linked list. *\/$/;"	m	struct:patient	typeref:struct:patient::patient
next	hg/inc/ispyTables.h	/^    struct patientInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:patientInfo	typeref:struct:patientInfo::patientInfo
next	hg/inc/ispyTables.h	/^    struct postSurgery *next;  \/* Next in singly linked list. *\/$/;"	m	struct:postSurgery	typeref:struct:postSurgery::postSurgery
next	hg/inc/ispyTables.h	/^    struct respEval *next;  \/* Next in singly linked list. *\/$/;"	m	struct:respEval	typeref:struct:respEval::respEval
next	hg/inc/itemAttr.h	/^    struct itemAttr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:itemAttr	typeref:struct:itemAttr::itemAttr
next	hg/inc/itemConf.h	/^    struct itemConf *next;  \/* Next in singly linked list. *\/$/;"	m	struct:itemConf	typeref:struct:itemConf::itemConf
next	hg/inc/itemDetailsHtml.h	/^    struct itemDetailsHtml *next;  \/* Next in singly linked list. *\/$/;"	m	struct:itemDetailsHtml	typeref:struct:itemDetailsHtml::itemDetailsHtml
next	hg/inc/jaxOrtholog.h	/^    struct jaxOrtholog *next;  \/* Next in singly linked list. *\/$/;"	m	struct:jaxOrtholog	typeref:struct:jaxOrtholog::jaxOrtholog
next	hg/inc/jaxQTL.h	/^    struct jaxQTL *next;  \/* Next in singly linked list. *\/$/;"	m	struct:jaxQTL	typeref:struct:jaxQTL::jaxQTL
next	hg/inc/jaxQTL2.h	/^    struct jaxQTL2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:jaxQTL2	typeref:struct:jaxQTL2::jaxQTL2
next	hg/inc/jaxQTL3.h	/^    struct jaxQTL3 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:jaxQTL3	typeref:struct:jaxQTL3::jaxQTL3
next	hg/inc/jgiGene.h	/^    struct jgiGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:jgiGene	typeref:struct:jgiGene::jgiGene
next	hg/inc/jksql.h	/^    struct sqlFieldInfo *next;$/;"	m	struct:sqlFieldInfo	typeref:struct:sqlFieldInfo::sqlFieldInfo
next	hg/inc/joiner.h	/^    struct joiner *next;	\/* Next in list. *\/$/;"	m	struct:joiner	typeref:struct:joiner::joiner
next	hg/inc/joiner.h	/^    struct joinerDependency *next;	\/* Next in list. *\/$/;"	m	struct:joinerDependency	typeref:struct:joinerDependency::joinerDependency
next	hg/inc/joiner.h	/^    struct joinerDtf *next;	\/* Next in list. *\/$/;"	m	struct:joinerDtf	typeref:struct:joinerDtf::joinerDtf
next	hg/inc/joiner.h	/^    struct joinerField *next;	\/* Next in list. *\/$/;"	m	struct:joinerField	typeref:struct:joinerField::joinerField
next	hg/inc/joiner.h	/^    struct joinerIgnore *next;	\/* Next in list. *\/$/;"	m	struct:joinerIgnore	typeref:struct:joinerIgnore::joinerIgnore
next	hg/inc/joiner.h	/^    struct joinerPair *next;	\/* Next in list. *\/$/;"	m	struct:joinerPair	typeref:struct:joinerPair::joinerPair
next	hg/inc/joiner.h	/^    struct joinerSet *next;		\/* Next in list. *\/$/;"	m	struct:joinerSet	typeref:struct:joinerSet::joinerSet
next	hg/inc/joiner.h	/^    struct joinerTable *next;	\/* Next in list. *\/$/;"	m	struct:joinerTable	typeref:struct:joinerTable::joinerTable
next	hg/inc/joiner.h	/^    struct joinerType *next;		\/* Next in list. *\/$/;"	m	struct:joinerType	typeref:struct:joinerType::joinerType
next	hg/inc/kg1ToKg2.h	/^    struct kg1ToKg2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:kg1ToKg2	typeref:struct:kg1ToKg2::kg1ToKg2
next	hg/inc/kgAlias.h	/^    struct kgAlias *next;  \/* Next in singly linked list. *\/$/;"	m	struct:kgAlias	typeref:struct:kgAlias::kgAlias
next	hg/inc/kgColor.h	/^    struct kgColor *next;  \/* Next in singly linked list. *\/$/;"	m	struct:kgColor	typeref:struct:kgColor::kgColor
next	hg/inc/kgMapName.h	/^    struct kgMapName *next;  \/* Next in singly linked list. *\/$/;"	m	struct:kgMapName	typeref:struct:kgMapName::kgMapName
next	hg/inc/kgProtAlias.h	/^    struct kgProtAlias *next;  \/* Next in singly linked list. *\/$/;"	m	struct:kgProtAlias	typeref:struct:kgProtAlias::kgProtAlias
next	hg/inc/kgXref.h	/^    struct kgXref *next;  \/* Next in singly linked list. *\/$/;"	m	struct:kgXref	typeref:struct:kgXref::kgXref
next	hg/inc/knownInfo.h	/^    struct knownInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:knownInfo	typeref:struct:knownInfo::knownInfo
next	hg/inc/knownMore.h	/^    struct knownMore *next;  \/* Next in singly linked list. *\/$/;"	m	struct:knownMore	typeref:struct:knownMore::knownMore
next	hg/inc/knownToSuper.h	/^    struct knownToSuper *next;  \/* Next in singly linked list. *\/$/;"	m	struct:knownToSuper	typeref:struct:knownToSuper::knownToSuper
next	hg/inc/landmark.h	/^    struct landmark *next;  \/* Next in singly linked list. *\/$/;"	m	struct:landmark	typeref:struct:landmark::landmark
next	hg/inc/landmark.h	/^    struct landmarkAttr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:landmarkAttr	typeref:struct:landmarkAttr::landmarkAttr
next	hg/inc/landmark.h	/^    struct landmarkAttrLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:landmarkAttrLink	typeref:struct:landmarkAttrLink::landmarkAttrLink
next	hg/inc/ld.h	/^    struct ld *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ld	typeref:struct:ld::ld
next	hg/inc/ld2.h	/^    struct ld2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ld2	typeref:struct:ld2::ld2
next	hg/inc/lfs.h	/^    struct lfs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:lfs	typeref:struct:lfs::lfs
next	hg/inc/liftOverChain.h	/^    struct liftOverChain *next;  \/* Next in singly linked list. *\/$/;"	m	struct:liftOverChain	typeref:struct:liftOverChain::liftOverChain
next	hg/inc/liftUp.h	/^    struct liftSpec *next;	\/* Next in list. *\/$/;"	m	struct:liftSpec	typeref:struct:liftSpec::liftSpec
next	hg/inc/llaInfo.h	/^    struct llaInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:llaInfo	typeref:struct:llaInfo::llaInfo
next	hg/inc/lowelabArkinOperonScore.h	/^    struct lowelabArkinOperonScore *next;  \/* Next in singly linked list. *\/$/;"	m	struct:lowelabArkinOperonScore	typeref:struct:lowelabArkinOperonScore::lowelabArkinOperonScore
next	hg/inc/lowelabPfamHit.h	/^    struct lowelabPfamHits *next;  \/* Next in singly linked list. *\/$/;"	m	struct:lowelabPfamHits	typeref:struct:lowelabPfamHits::lowelabPfamHits
next	hg/inc/lowelabTIGROperonScore.h	/^    struct lowelabTIGROperonScore *next;  \/* Next in singly linked list. *\/$/;"	m	struct:lowelabTIGROperonScore	typeref:struct:lowelabTIGROperonScore::lowelabTIGROperonScore
next	hg/inc/lsSnpPdb.h	/^    struct lsSnpPdb *next;  \/* Next in singly linked list. *\/$/;"	m	struct:lsSnpPdb	typeref:struct:lsSnpPdb::lsSnpPdb
next	hg/inc/mafFrames.h	/^    struct mafFrames *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mafFrames	typeref:struct:mafFrames::mafFrames
next	hg/inc/mafSummary.h	/^    struct mafSummary *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mafSummary	typeref:struct:mafSummary::mafSummary
next	hg/inc/makeItemsItem.h	/^    struct makeItemsItem *next;  \/* Next in singly linked list. *\/$/;"	m	struct:makeItemsItem	typeref:struct:makeItemsItem::makeItemsItem
next	hg/inc/mammalPsg.h	/^    struct mammalPsg *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mammalPsg	typeref:struct:mammalPsg::mammalPsg
next	hg/inc/mapSts.h	/^    struct mapSts *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mapSts	typeref:struct:mapSts::mapSts
next	hg/inc/mcnBreakpoints.h	/^    struct mcnBreakpoints *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mcnBreakpoints	typeref:struct:mcnBreakpoints::mcnBreakpoints
next	hg/inc/mdb.h	/^    struct mdb *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mdb	typeref:struct:mdb::mdb
next	hg/inc/mdb.h	/^    struct mdbByVar* next;   \/\/ Next in singly linked list of variables$/;"	m	struct:mdbByVar	typeref:struct:mdbByVar::mdbByVar
next	hg/inc/mdb.h	/^    struct mdbLeafObj* next; \/\/ Next in singly linked list of variables$/;"	m	struct:mdbLeafObj	typeref:struct:mdbLeafObj::mdbLeafObj
next	hg/inc/mdb.h	/^    struct mdbLimbVal* next; \/\/ Next in singly linked list of variables$/;"	m	struct:mdbLimbVal	typeref:struct:mdbLimbVal::mdbLimbVal
next	hg/inc/mdb.h	/^    struct mdbObj* next;     \/\/ Next in singly linked list of objects$/;"	m	struct:mdbObj	typeref:struct:mdbObj::mdbObj
next	hg/inc/mdb.h	/^    struct mdbVar* next;     \/\/ Next in singly linked list of variables$/;"	m	struct:mdbVar	typeref:struct:mdbVar::mdbVar
next	hg/inc/megablastInfo.h	/^    struct megablastInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:megablastInfo	typeref:struct:megablastInfo::megablastInfo
next	hg/inc/metaChromGraph.h	/^    struct metaChromGraph *next;  \/* Next in singly linked list. *\/$/;"	m	struct:metaChromGraph	typeref:struct:metaChromGraph::metaChromGraph
next	hg/inc/metaTbl.h	/^    struct metaByVar* next;   \/\/ Next in singly linked list of variables$/;"	m	struct:metaByVar	typeref:struct:metaByVar::metaByVar
next	hg/inc/metaTbl.h	/^    struct metaLeafObj* next; \/\/ Next in singly linked list of variables$/;"	m	struct:metaLeafObj	typeref:struct:metaLeafObj::metaLeafObj
next	hg/inc/metaTbl.h	/^    struct metaLimbVal* next; \/\/ Next in singly linked list of variables$/;"	m	struct:metaLimbVal	typeref:struct:metaLimbVal::metaLimbVal
next	hg/inc/metaTbl.h	/^    struct metaObj* next;     \/\/ Next in singly linked list of objects$/;"	m	struct:metaObj	typeref:struct:metaObj::metaObj
next	hg/inc/metaTbl.h	/^    struct metaTbl *next;   \/\/ Next in singly linked list.$/;"	m	struct:metaTbl	typeref:struct:metaTbl::metaTbl
next	hg/inc/metaTbl.h	/^    struct metaVar* next;     \/\/ Next in singly linked list of variables$/;"	m	struct:metaVar	typeref:struct:metaVar::metaVar
next	hg/inc/mgiID.h	/^    struct MGIid *next;  \/* Next in singly linked list. *\/$/;"	m	struct:MGIid	typeref:struct:MGIid::MGIid
next	hg/inc/microarray.h	/^    struct maGrouping *next;$/;"	m	struct:maGrouping	typeref:struct:maGrouping::maGrouping
next	hg/inc/microarray.h	/^    struct maMedSpec *next;$/;"	m	struct:maMedSpec	typeref:struct:maMedSpec::maMedSpec
next	hg/inc/minGeneInfo.h	/^    struct minGeneInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:minGeneInfo	typeref:struct:minGeneInfo::minGeneInfo
next	hg/inc/mouseOrtho.h	/^    struct mouseOrtho *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mouseOrtho	typeref:struct:mouseOrtho::mouseOrtho
next	hg/inc/mouseSyn.h	/^    struct mouseSyn *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mouseSyn	typeref:struct:mouseSyn::mouseSyn
next	hg/inc/mouseSynWhd.h	/^    struct mouseSynWhd *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mouseSynWhd	typeref:struct:mouseSynWhd::mouseSynWhd
next	hg/inc/mrnaMisMatch.h	/^    struct mrnaMisMatch *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mrnaMisMatch	typeref:struct:mrnaMisMatch::mrnaMisMatch
next	hg/inc/mysqlTableStatus.h	/^    struct mysqlTableStatus *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mysqlTableStatus	typeref:struct:mysqlTableStatus::mysqlTableStatus
next	hg/inc/ncRna.h	/^    struct ncRna *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ncRna	typeref:struct:ncRna::ncRna
next	hg/inc/netAlign.h	/^    struct netAlign *next;  \/* Next in singly linked list. *\/$/;"	m	struct:netAlign	typeref:struct:netAlign::netAlign
next	hg/inc/omicia.h	/^    struct omiciaAttr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:omiciaAttr	typeref:struct:omiciaAttr::omiciaAttr
next	hg/inc/omicia.h	/^    struct omiciaAuto *next;  \/* Next in singly linked list. *\/$/;"	m	struct:omiciaAuto	typeref:struct:omiciaAuto::omiciaAuto
next	hg/inc/omicia.h	/^    struct omiciaHand *next;  \/* Next in singly linked list. *\/$/;"	m	struct:omiciaHand	typeref:struct:omiciaHand::omiciaHand
next	hg/inc/omicia.h	/^    struct omiciaLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:omiciaLink	typeref:struct:omiciaLink::omiciaLink
next	hg/inc/omimTitle.h	/^    struct omimTitle *next;  \/* Next in singly linked list. *\/$/;"	m	struct:omimTitle	typeref:struct:omimTitle::omimTitle
next	hg/inc/oreganno.h	/^    struct oreganno *next;  \/* Next in singly linked list. *\/$/;"	m	struct:oreganno	typeref:struct:oreganno::oreganno
next	hg/inc/oreganno.h	/^    struct oregannoAttr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:oregannoAttr	typeref:struct:oregannoAttr::oregannoAttr
next	hg/inc/oreganno.h	/^    struct oregannoLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:oregannoLink	typeref:struct:oregannoLink::oregannoLink
next	hg/inc/oregannoOther.h	/^    struct oregannoOther *next;  \/* Next in singly linked list. *\/$/;"	m	struct:oregannoOther	typeref:struct:oregannoOther::oregannoOther
next	hg/inc/oregannoOther.h	/^    struct oregannoOtherAttr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:oregannoOtherAttr	typeref:struct:oregannoOtherAttr::oregannoOtherAttr
next	hg/inc/oregannoOther.h	/^    struct oregannoOtherLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:oregannoOtherLink	typeref:struct:oregannoOtherLink::oregannoOtherLink
next	hg/inc/orthoAlleles.h	/^    struct orthoAlleles *next;  \/* Next in singly linked list. *\/$/;"	m	struct:orthoAlleles	typeref:struct:orthoAlleles::orthoAlleles
next	hg/inc/pairedTagAlign.h	/^    struct pairedTagAlign *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pairedTagAlign	typeref:struct:pairedTagAlign::pairedTagAlign
next	hg/inc/pbStamp.h	/^    struct pbStamp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pbStamp	typeref:struct:pbStamp::pbStamp
next	hg/inc/pepPred.h	/^    struct pepPred *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pepPred	typeref:struct:pepPred::pepPred
next	hg/inc/peptideMapping.h	/^    struct peptideMapping *next;  \/* Next in singly linked list. *\/$/;"	m	struct:peptideMapping	typeref:struct:peptideMapping::peptideMapping
next	hg/inc/pgPhenoAssoc.h	/^    struct pgPhenoAssoc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pgPhenoAssoc	typeref:struct:pgPhenoAssoc::pgPhenoAssoc
next	hg/inc/pgPolyphenPred.h	/^    struct pgPolyphenPred *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pgPolyphenPred	typeref:struct:pgPolyphenPred::pgPolyphenPred
next	hg/inc/pgSiftPred.h	/^    struct pgSiftPred *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pgSiftPred	typeref:struct:pgSiftPred::pgSiftPred
next	hg/inc/pgSnp.h	/^    struct pgSnp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pgSnp	typeref:struct:pgSnp::pgSnp
next	hg/inc/plasEndPairs.h	/^    struct plasEndPairs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:plasEndPairs	typeref:struct:plasEndPairs::plasEndPairs
next	hg/inc/polyGenotype.h	/^    struct polyGenotype *next;  \/* Next in singly linked list. *\/$/;"	m	struct:polyGenotype	typeref:struct:polyGenotype::polyGenotype
next	hg/inc/protFeat.h	/^    struct protFeat *next;  \/* Next in singly linked list. *\/$/;"	m	struct:protFeat	typeref:struct:protFeat::protFeat
next	hg/inc/protVar.h	/^    struct protVar *next;  \/* Next in singly linked list. *\/$/;"	m	struct:protVar	typeref:struct:protVar::protVar
next	hg/inc/protVar.h	/^    struct protVarAttr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:protVarAttr	typeref:struct:protVarAttr::protVarAttr
next	hg/inc/protVar.h	/^    struct protVarLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:protVarLink	typeref:struct:protVarLink::protVarLink
next	hg/inc/protVar.h	/^    struct protVarPos *next;  \/* Next in singly linked list. *\/$/;"	m	struct:protVarPos	typeref:struct:protVarPos::protVarPos
next	hg/inc/pscreen.h	/^    struct pscreen *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pscreen	typeref:struct:pscreen::pscreen
next	hg/inc/pseudoGeneLink.h	/^    struct pseudoGeneLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pseudoGeneLink	typeref:struct:pseudoGeneLink::pseudoGeneLink
next	hg/inc/pslWQueryID.h	/^    struct pslWQueryID *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pslWQueryID	typeref:struct:pslWQueryID::pslWQueryID
next	hg/inc/pslWScore.h	/^    struct pslWScore *next;  \/* Next in singly linked list. *\/$/;"	m	struct:pslWScore	typeref:struct:pslWScore::pslWScore
next	hg/inc/putaInfo.h	/^    struct putaInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:putaInfo	typeref:struct:putaInfo::putaInfo
next	hg/inc/qaSeq.h	/^    struct qaSeq *next;  \/* Next in list. *\/$/;"	m	struct:qaSeq	typeref:struct:qaSeq::qaSeq
next	hg/inc/rankProp.h	/^    struct rankProp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rankProp	typeref:struct:rankProp::rankProp
next	hg/inc/recombRate.h	/^    struct recombRate *next;  \/* Next in singly linked list. *\/$/;"	m	struct:recombRate	typeref:struct:recombRate::recombRate
next	hg/inc/recombRateMouse.h	/^    struct recombRateMouse *next;  \/* Next in singly linked list. *\/$/;"	m	struct:recombRateMouse	typeref:struct:recombRateMouse::recombRateMouse
next	hg/inc/recombRateRat.h	/^    struct recombRateRat *next;  \/* Next in singly linked list. *\/$/;"	m	struct:recombRateRat	typeref:struct:recombRateRat::recombRateRat
next	hg/inc/refLink.h	/^    struct refLink *next;  \/* Next in singly linked list. *\/$/;"	m	struct:refLink	typeref:struct:refLink::refLink
next	hg/inc/refSeqStatus.h	/^    struct refSeqStatus *next;  \/* Next in singly linked list. *\/$/;"	m	struct:refSeqStatus	typeref:struct:refSeqStatus::refSeqStatus
next	hg/inc/retroMrnaInfo.h	/^    struct retroMrnaInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:retroMrnaInfo	typeref:struct:retroMrnaInfo::retroMrnaInfo
next	hg/inc/rgdQtl.h	/^    struct rgdQtl *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rgdQtl	typeref:struct:rgdQtl::rgdQtl
next	hg/inc/rhMapInfo.h	/^    struct rhMapInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rhMapInfo	typeref:struct:rhMapInfo::rhMapInfo
next	hg/inc/rhMapZfishInfo.h	/^    struct rhMapZfishInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rhMapZfishInfo	typeref:struct:rhMapZfishInfo::rhMapZfishInfo
next	hg/inc/riken.h	/^    struct rikenAccession *next;$/;"	m	struct:rikenAccession	typeref:struct:rikenAccession::rikenAccession
next	hg/inc/riken.h	/^    struct rikenAltid *next;$/;"	m	struct:rikenAltid	typeref:struct:rikenAltid::rikenAltid
next	hg/inc/riken.h	/^    struct rikenAnnotation *next;$/;"	m	struct:rikenAnnotation	typeref:struct:rikenAnnotation::rikenAnnotation
next	hg/inc/riken.h	/^    struct rikenAnnotations *next;$/;"	m	struct:rikenAnnotations	typeref:struct:rikenAnnotations::rikenAnnotations
next	hg/inc/riken.h	/^    struct rikenAnnotator *next;$/;"	m	struct:rikenAnnotator	typeref:struct:rikenAnnotator::rikenAnnotator
next	hg/inc/riken.h	/^    struct rikenAnntext *next;$/;"	m	struct:rikenAnntext	typeref:struct:rikenAnntext::rikenAnntext
next	hg/inc/riken.h	/^    struct rikenCloneid *next;$/;"	m	struct:rikenCloneid	typeref:struct:rikenCloneid::rikenCloneid
next	hg/inc/riken.h	/^    struct rikenCluster *next;$/;"	m	struct:rikenCluster	typeref:struct:rikenCluster::rikenCluster
next	hg/inc/riken.h	/^    struct rikenComment *next;$/;"	m	struct:rikenComment	typeref:struct:rikenComment::rikenComment
next	hg/inc/riken.h	/^    struct rikenDatasrc *next;$/;"	m	struct:rikenDatasrc	typeref:struct:rikenDatasrc::rikenDatasrc
next	hg/inc/riken.h	/^    struct rikenEvidence *next;$/;"	m	struct:rikenEvidence	typeref:struct:rikenEvidence::rikenEvidence
next	hg/inc/riken.h	/^    struct rikenFantomid *next;$/;"	m	struct:rikenFantomid	typeref:struct:rikenFantomid::rikenFantomid
next	hg/inc/riken.h	/^    struct rikenMaxmlClusters *next;$/;"	m	struct:rikenMaxmlClusters	typeref:struct:rikenMaxmlClusters::rikenMaxmlClusters
next	hg/inc/riken.h	/^    struct rikenMaxmlSequences *next;$/;"	m	struct:rikenMaxmlSequences	typeref:struct:rikenMaxmlSequences::rikenMaxmlSequences
next	hg/inc/riken.h	/^    struct rikenModifiedTime *next;$/;"	m	struct:rikenModifiedTime	typeref:struct:rikenModifiedTime::rikenModifiedTime
next	hg/inc/riken.h	/^    struct rikenQualifier *next;$/;"	m	struct:rikenQualifier	typeref:struct:rikenQualifier::rikenQualifier
next	hg/inc/riken.h	/^    struct rikenRearrayid *next;$/;"	m	struct:rikenRearrayid	typeref:struct:rikenRearrayid::rikenRearrayid
next	hg/inc/riken.h	/^    struct rikenRepresentativeSeqid *next;$/;"	m	struct:rikenRepresentativeSeqid	typeref:struct:rikenRepresentativeSeqid::rikenRepresentativeSeqid
next	hg/inc/riken.h	/^    struct rikenSeqid *next;$/;"	m	struct:rikenSeqid	typeref:struct:rikenSeqid::rikenSeqid
next	hg/inc/riken.h	/^    struct rikenSequence *next;$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenSequence
next	hg/inc/riken.h	/^    struct rikenSrckey *next;$/;"	m	struct:rikenSrckey	typeref:struct:rikenSrckey::rikenSrckey
next	hg/inc/riken.h	/^    struct rikenVersion *next;$/;"	m	struct:rikenVersion	typeref:struct:rikenVersion::rikenVersion
next	hg/inc/rikenBest.h	/^    struct rikenBest *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rikenBest	typeref:struct:rikenBest::rikenBest
next	hg/inc/rikenCluster.h	/^    struct rikenUcscCluster *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rikenUcscCluster	typeref:struct:rikenUcscCluster::rikenUcscCluster
next	hg/inc/rmskOut.h	/^    struct rmskOut *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rmskOut	typeref:struct:rmskOut::rmskOut
next	hg/inc/rnaFold.h	/^    struct rnaFold *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rnaFold	typeref:struct:rnaFold::rnaFold
next	hg/inc/rnaGene.h	/^    struct rnaGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rnaGene	typeref:struct:rnaGene::rnaGene
next	hg/inc/rnaGenes.h	/^    struct rnaGenes *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rnaGenes	typeref:struct:rnaGenes::rnaGenes
next	hg/inc/rnaGroup.h	/^    struct rnaGroup *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rnaGroup	typeref:struct:rnaGroup::rnaGroup
next	hg/inc/rnaHybridization.h	/^    struct rnaHybridization *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rnaHybridization	typeref:struct:rnaHybridization::rnaHybridization
next	hg/inc/rnaPLFold.h	/^    struct rnaPLFold *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rnaPLFold	typeref:struct:rnaPLFold::rnaPLFold
next	hg/inc/rnaSecStr.h	/^    struct rnaSecStr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:rnaSecStr	typeref:struct:rnaSecStr::rnaSecStr
next	hg/inc/roughAli.h	/^    struct roughAli *next;  \/* Next in singly linked list. *\/$/;"	m	struct:roughAli	typeref:struct:roughAli::roughAli
next	hg/inc/sage.h	/^    struct sage *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sage	typeref:struct:sage::sage
next	hg/inc/sageCounts.h	/^    struct sageCounts *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sageCounts	typeref:struct:sageCounts::sageCounts
next	hg/inc/sageExp.h	/^    struct sageExp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sageExp	typeref:struct:sageExp::sageExp
next	hg/inc/samAlignment.h	/^    struct samAlignment *next;  \/* Next in singly linked list. *\/$/;"	m	struct:samAlignment	typeref:struct:samAlignment::samAlignment
next	hg/inc/sample.h	/^    struct sample *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sample	typeref:struct:sample::sample
next	hg/inc/sanger22extra.h	/^    struct sanger22extra *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sanger22extra	typeref:struct:sanger22extra::sanger22extra
next	hg/inc/sangerGene.h	/^    struct sangerGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sangerGene	typeref:struct:sangerGene::sangerGene
next	hg/inc/sangerGeneToWBGeneID.h	/^    struct sangerGeneToWBGeneID *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sangerGeneToWBGeneID	typeref:struct:sangerGeneToWBGeneID::sangerGeneToWBGeneID
next	hg/inc/sargassoSeaXra.h	/^    struct sargassoSeaXra *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sargassoSeaXra	typeref:struct:sargassoSeaXra::sargassoSeaXra
next	hg/inc/scopDes.h	/^    struct scopDes *next;  \/* Next in singly linked list. *\/$/;"	m	struct:scopDes	typeref:struct:scopDes::scopDes
next	hg/inc/scoredRef.h	/^    struct scoredRef *next;  \/* Next in singly linked list. *\/$/;"	m	struct:scoredRef	typeref:struct:scoredRef::scoredRef
next	hg/inc/sgdAbundance.h	/^    struct sgdAbundance *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sgdAbundance	typeref:struct:sgdAbundance::sgdAbundance
next	hg/inc/sgdClone.h	/^    struct sgdClone *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sgdClone	typeref:struct:sgdClone::sgdClone
next	hg/inc/sgdDescription.h	/^    struct sgdDescription *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sgdDescription	typeref:struct:sgdDescription::sgdDescription
next	hg/inc/sgdOther.h	/^    struct sgdOther *next;  \/* Next in singly linked list. *\/$/;"	m	struct:sgdOther	typeref:struct:sgdOther::sgdOther
next	hg/inc/simpleNucDiff.h	/^    struct simpleNucDiff *next;  \/* Next in singly linked list. *\/$/;"	m	struct:simpleNucDiff	typeref:struct:simpleNucDiff::simpleNucDiff
next	hg/inc/simpleRepeat.h	/^    struct simpleRepeat *next;  \/* Next in singly linked list. *\/$/;"	m	struct:simpleRepeat	typeref:struct:simpleRepeat::simpleRepeat
next	hg/inc/snoRNAs.h	/^    struct snoRNAs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snoRNAs	typeref:struct:snoRNAs::snoRNAs
next	hg/inc/snp.h	/^    struct snp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snp	typeref:struct:snp::snp
next	hg/inc/snp125.h	/^    struct snp125 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snp125	typeref:struct:snp125::snp125
next	hg/inc/snp125.h	/^    struct snp125Extended *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snp125Extended	typeref:struct:snp125Extended::snp125Extended
next	hg/inc/snp125CodingCoordless.h	/^    struct snp125CodingCoordless *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snp125CodingCoordless	typeref:struct:snp125CodingCoordless::snp125CodingCoordless
next	hg/inc/snp125Exceptions.h	/^    struct snp125Exceptions *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snp125Exceptions	typeref:struct:snp125Exceptions::snp125Exceptions
next	hg/inc/snp132Ext.h	/^    struct snp132Ext *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snp132Ext	typeref:struct:snp132Ext::snp132Ext
next	hg/inc/snpExceptions.h	/^    struct snpExceptions *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snpExceptions	typeref:struct:snpExceptions::snpExceptions
next	hg/inc/snpExtFile.h	/^    struct snpExtFile *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snpExtFile	typeref:struct:snpExtFile::snpExtFile
next	hg/inc/snpFasta.h	/^    struct snpFasta *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snpFasta	typeref:struct:snpFasta::snpFasta
next	hg/inc/snpMap.h	/^    struct snpMap *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snpMap	typeref:struct:snpMap::snpMap
next	hg/inc/snpSeq.h	/^    struct snpSeq *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snpSeq	typeref:struct:snpSeq::snpSeq
next	hg/inc/snpTmp.h	/^    struct snpTmp *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snpTmp	typeref:struct:snpTmp::snpTmp
next	hg/inc/softPromoter.h	/^    struct softPromoter *next;  \/* Next in singly linked list. *\/$/;"	m	struct:softPromoter	typeref:struct:softPromoter::softPromoter
next	hg/inc/softberryHom.h	/^    struct softberryHom *next;  \/* Next in singly linked list. *\/$/;"	m	struct:softberryHom	typeref:struct:softberryHom::softberryHom
next	hg/inc/soterm.h	/^    struct soCall *next;$/;"	m	struct:soCall	typeref:struct:soCall::soCall
next	hg/inc/spDb.h	/^    struct spCitation *next;$/;"	m	struct:spCitation	typeref:struct:spCitation::spCitation
next	hg/inc/spDb.h	/^    struct spFeature *next;$/;"	m	struct:spFeature	typeref:struct:spFeature::spFeature
next	hg/inc/splignAlign.h	/^    struct splignAlign *next;  \/* Next in singly linked list. *\/$/;"	m	struct:splignAlign	typeref:struct:splignAlign::splignAlign
next	hg/inc/stanMad.h	/^    struct stanMad *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stanMad	typeref:struct:stanMad::stanMad
next	hg/inc/stsAlias.h	/^    struct stsAlias *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsAlias	typeref:struct:stsAlias::stsAlias
next	hg/inc/stsInfo.h	/^    struct stsInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsInfo	typeref:struct:stsInfo::stsInfo
next	hg/inc/stsInfo2.h	/^    struct stsInfo2 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsInfo2	typeref:struct:stsInfo2::stsInfo2
next	hg/inc/stsInfoMouse.h	/^    struct stsInfoMouse *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsInfoMouse	typeref:struct:stsInfoMouse::stsInfoMouse
next	hg/inc/stsInfoMouseNew.h	/^    struct stsInfoMouseNew *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsInfoMouseNew	typeref:struct:stsInfoMouseNew::stsInfoMouseNew
next	hg/inc/stsInfoRat.h	/^    struct stsInfoRat *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsInfoRat	typeref:struct:stsInfoRat::stsInfoRat
next	hg/inc/stsMap.h	/^    struct stsMap *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsMap	typeref:struct:stsMap::stsMap
next	hg/inc/stsMapMouse.h	/^    struct stsMapMouse *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsMapMouse	typeref:struct:stsMapMouse::stsMapMouse
next	hg/inc/stsMapMouseNew.h	/^    struct stsMapMouseNew *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsMapMouseNew	typeref:struct:stsMapMouseNew::stsMapMouseNew
next	hg/inc/stsMapRat.h	/^    struct stsMapRat *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsMapRat	typeref:struct:stsMapRat::stsMapRat
next	hg/inc/stsMarker.h	/^    struct stsMarker *next;  \/* Next in singly linked list. *\/$/;"	m	struct:stsMarker	typeref:struct:stsMarker::stsMarker
next	hg/inc/switchDbTss.h	/^    struct switchDbTss *next;  \/* Next in singly linked list. *\/$/;"	m	struct:switchDbTss	typeref:struct:switchDbTss::switchDbTss
next	hg/inc/synMap.h	/^    struct synMap *next;  \/* Next in singly linked list. *\/$/;"	m	struct:synMap	typeref:struct:synMap::synMap
next	hg/inc/synteny100000.h	/^    struct synteny100000 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:synteny100000	typeref:struct:synteny100000::synteny100000
next	hg/inc/syntenyBerk.h	/^    struct syntenyBerk *next;  \/* Next in singly linked list. *\/$/;"	m	struct:syntenyBerk	typeref:struct:syntenyBerk::syntenyBerk
next	hg/inc/syntenySanger.h	/^    struct syntenySanger *next;  \/* Next in singly linked list. *\/$/;"	m	struct:syntenySanger	typeref:struct:syntenySanger::syntenySanger
next	hg/inc/tRNAs.h	/^    struct tRNAs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tRNAs	typeref:struct:tRNAs::tRNAs
next	hg/inc/tableDescriptions.h	/^    struct tableDescriptions *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tableDescriptions	typeref:struct:tableDescriptions::tableDescriptions
next	hg/inc/tableStatus.h	/^    struct tableStatus *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tableStatus	typeref:struct:tableStatus::tableStatus
next	hg/inc/tagAlign.h	/^    struct tagAlign *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tagAlign	typeref:struct:tagAlign::tagAlign
next	hg/inc/targetDb.h	/^    struct targetDb *next;  \/* Next in singly linked list. *\/$/;"	m	struct:targetDb	typeref:struct:targetDb::targetDb
next	hg/inc/taxonDivision.h	/^    struct taxonDivision *next;  \/* Next in singly linked list. *\/$/;"	m	struct:taxonDivision	typeref:struct:taxonDivision::taxonDivision
next	hg/inc/taxonGeneticCode.h	/^    struct taxonGeneticCode *next;  \/* Next in singly linked list. *\/$/;"	m	struct:taxonGeneticCode	typeref:struct:taxonGeneticCode::taxonGeneticCode
next	hg/inc/taxonName.h	/^    struct taxonName *next;  \/* Next in singly linked list. *\/$/;"	m	struct:taxonName	typeref:struct:taxonName::taxonName
next	hg/inc/taxonNode.h	/^    struct taxonNode *next;  \/* Next in singly linked list. *\/$/;"	m	struct:taxonNode	typeref:struct:taxonNode::taxonNode
next	hg/inc/taxonXref.h	/^    struct taxonXref *next;  \/* Next in singly linked list. *\/$/;"	m	struct:taxonXref	typeref:struct:taxonXref::taxonXref
next	hg/inc/tfbsCons.h	/^    struct tfbsCons *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tfbsCons	typeref:struct:tfbsCons::tfbsCons
next	hg/inc/tfbsConsFactors.h	/^    struct tfbsConsFactors *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tfbsConsFactors	typeref:struct:tfbsConsFactors::tfbsConsFactors
next	hg/inc/tfbsConsMap.h	/^    struct tfbsConsMap *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tfbsConsMap	typeref:struct:tfbsConsMap::tfbsConsMap
next	hg/inc/tfbsConsSites.h	/^    struct tfbsConsSites *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tfbsConsSites	typeref:struct:tfbsConsSites::tfbsConsSites
next	hg/inc/tigrCmrGene.h	/^    struct tigrCmrGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tigrCmrGene	typeref:struct:tigrCmrGene::tigrCmrGene
next	hg/inc/tigrOperon.h	/^    struct tigrOperon *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tigrOperon	typeref:struct:tigrOperon::tigrOperon
next	hg/inc/tilingPath.h	/^    struct tilingPath *next;  \/* Next in singly linked list. *\/$/;"	m	struct:tilingPath	typeref:struct:tilingPath::tilingPath
next	hg/inc/traceInfo.h	/^    struct traceInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:traceInfo	typeref:struct:traceInfo::traceInfo
next	hg/inc/trackDb.h	/^    struct trackDb *next;  \/* Next in singly linked list.  Next sibling in tree. *\/$/;"	m	struct:trackDb	typeref:struct:trackDb::trackDb
next	hg/inc/trackHub.h	/^    struct trackHub *next;$/;"	m	struct:trackHub	typeref:struct:trackHub::trackHub
next	hg/inc/trackHub.h	/^    struct trackHubGenome *next;$/;"	m	struct:trackHubGenome	typeref:struct:trackHubGenome::trackHubGenome
next	hg/inc/trackTable.h	/^    struct trackTable *next;  \/* Next in singly linked list. *\/$/;"	m	struct:trackTable	typeref:struct:trackTable::trackTable
next	hg/inc/trackVersion.h	/^    struct trackVersion *next;  \/* Next in singly linked list. *\/$/;"	m	struct:trackVersion	typeref:struct:trackVersion::trackVersion
next	hg/inc/transMapGene.h	/^    struct transMapGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:transMapGene	typeref:struct:transMapGene::transMapGene
next	hg/inc/transMapInfo.h	/^    struct transMapInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:transMapInfo	typeref:struct:transMapInfo::transMapInfo
next	hg/inc/transMapSrc.h	/^    struct transMapSrc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:transMapSrc	typeref:struct:transMapSrc::transMapSrc
next	hg/inc/transRegCode.h	/^    struct transRegCode *next;  \/* Next in singly linked list. *\/$/;"	m	struct:transRegCode	typeref:struct:transRegCode::transRegCode
next	hg/inc/transRegCodeCondition.h	/^    struct transRegCodeCondition *next;  \/* Next in singly linked list. *\/$/;"	m	struct:transRegCodeCondition	typeref:struct:transRegCodeCondition::transRegCodeCondition
next	hg/inc/transRegCodeProbe.h	/^    struct transRegCodeProbe *next;  \/* Next in singly linked list. *\/$/;"	m	struct:transRegCodeProbe	typeref:struct:transRegCodeProbe::transRegCodeProbe
next	hg/inc/txCluster.h	/^    struct txCluster *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txCluster	typeref:struct:txCluster::txCluster
next	hg/inc/txEdgeBed.h	/^    struct txEdgeBed *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txEdgeBed	typeref:struct:txEdgeBed::txEdgeBed
next	hg/inc/txEdgeOrtho.h	/^    struct txEdgeOrtho *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txEdgeOrtho	typeref:struct:txEdgeOrtho::txEdgeOrtho
next	hg/inc/txGraph.h	/^    struct txEdge *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txEdge	typeref:struct:txEdge::txEdge
next	hg/inc/txGraph.h	/^    struct txEvidence *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txEvidence	typeref:struct:txEvidence::txEvidence
next	hg/inc/txGraph.h	/^    struct txGraph *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txGraph	typeref:struct:txGraph::txGraph
next	hg/inc/txInfo.h	/^    struct txInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txInfo	typeref:struct:txInfo::txInfo
next	hg/inc/txRnaAccs.h	/^    struct txRnaAccs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:txRnaAccs	typeref:struct:txRnaAccs::txRnaAccs
next	hg/inc/ucscRetroInfo.h	/^    struct ucscRetroInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ucscRetroInfo	typeref:struct:ucscRetroInfo::ucscRetroInfo
next	hg/inc/ucscRetroOrtho.h	/^    struct ucscRetroOrtho *next;  \/* Next in singly linked list. *\/$/;"	m	struct:ucscRetroOrtho	typeref:struct:ucscRetroOrtho::ucscRetroOrtho
next	hg/inc/variant.h	/^    struct allele *next;$/;"	m	struct:allele	typeref:struct:allele::allele
next	hg/inc/variant.h	/^    struct variant *next;  \/* Next in singly linked list. *\/$/;"	m	struct:variant	typeref:struct:variant::variant
next	hg/inc/variome.h	/^    struct variome *next;  \/* Next in singly linked list. *\/$/;"	m	struct:variome	typeref:struct:variome::variome
next	hg/inc/vegaInfo.h	/^    struct vegaInfo *next;  \/* Next in singly linked list. *\/$/;"	m	struct:vegaInfo	typeref:struct:vegaInfo::vegaInfo
next	hg/inc/vegaInfoZfish.h	/^    struct vegaInfoZfish *next;  \/* Next in singly linked list. *\/$/;"	m	struct:vegaInfoZfish	typeref:struct:vegaInfoZfish::vegaInfoZfish
next	hg/inc/vntr.h	/^    struct vntr *next;  \/* Next in singly linked list. *\/$/;"	m	struct:vntr	typeref:struct:vntr::vntr
next	hg/inc/wabAli.h	/^    struct wabAli *next;  \/* Next in singly linked list. *\/$/;"	m	struct:wabAli	typeref:struct:wabAli::wabAli
next	hg/inc/wgRna.h	/^    struct wgRna *next;  \/* Next in singly linked list. *\/$/;"	m	struct:wgRna	typeref:struct:wgRna::wgRna
next	hg/inc/wiggle.h	/^    struct wigAsciiData *next;	\/*	next in singly linked list	*\/$/;"	m	struct:wigAsciiData	typeref:struct:wigAsciiData::wigAsciiData
next	hg/inc/wiggle.h	/^    struct wiggle *next;	\/* Next in singly linked list. *\/$/;"	m	struct:wiggle	typeref:struct:wiggle::wiggle
next	hg/inc/wiggle.h	/^    struct wiggleArray *next;	\/*	might be more than one chrom	*\/$/;"	m	struct:wiggleArray	typeref:struct:wiggleArray::wiggleArray
next	hg/inc/wiggle.h	/^    struct wiggleData *next;  \/* Next in singly linked list. *\/$/;"	m	struct:wiggleData	typeref:struct:wiggleData::wiggleData
next	hg/inc/wiggle.h	/^    struct wiggleStats *next;  \/* Next in singly linked list. *\/$/;"	m	struct:wiggleStats	typeref:struct:wiggleStats::wiggleStats
next	hg/inc/wikiTrack.h	/^    struct wikiTrack *next;  \/* Next in singly linked list. *\/$/;"	m	struct:wikiTrack	typeref:struct:wikiTrack::wikiTrack
next	hg/inc/yaleGencodeAssoc.h	/^    struct yaleGencodeAssoc *next;  \/* Next in singly linked list. *\/$/;"	m	struct:yaleGencodeAssoc	typeref:struct:yaleGencodeAssoc::yaleGencodeAssoc
next	hg/inc/zdobnovSynt.h	/^    struct zdobnovSynt *next;  \/* Next in singly linked list. *\/$/;"	m	struct:zdobnovSynt	typeref:struct:zdobnovSynt::zdobnovSynt
next	hg/lib/chainNetDbLoad.c	/^    struct cnlHelper *next;	\/* Next in list. *\/$/;"	m	struct:cnlHelper	typeref:struct:cnlHelper::cnlHelper	file:
next	hg/lib/chromGraph.c	/^    struct cInfo *next;$/;"	m	struct:cInfo	typeref:struct:cInfo::cInfo	file:
next	hg/lib/chromGraphFactory.c	/^    struct labeledFile *next;$/;"	m	struct:labeledFile	typeref:struct:labeledFile::labeledFile	file:
next	hg/lib/chromGraphFactory.c	/^    struct markerTypeRecognizer *next;$/;"	m	struct:markerTypeRecognizer	typeref:struct:markerTypeRecognizer::markerTypeRecognizer	file:
next	hg/lib/coordConv.c	/^    struct possibleCoord *next;$/;"	m	struct:possibleCoord	typeref:struct:possibleCoord::possibleCoord	file:
next	hg/lib/hdb.c	/^    struct largeSeqFile *next;  \/* Next in list. *\/$/;"	m	struct:largeSeqFile	typeref:struct:largeSeqFile::largeSeqFile	file:
next	hg/lib/hgFind.c	/^    struct tsrPos *next;	\/* Next in list. *\/$/;"	m	struct:tsrPos	typeref:struct:tsrPos::tsrPos	file:
next	hg/lib/hgMaf.c	/^    struct oneOrg *next;$/;"	m	struct:oneOrg	typeref:struct:oneOrg::oneOrg	file:
next	hg/lib/jksql.c	/^    struct sqlConnCacheEntry *next;$/;"	m	struct:sqlConnCacheEntry	typeref:struct:sqlConnCacheEntry::sqlConnCacheEntry	file:
next	hg/lib/jksql.c	/^    struct sqlProfile *next;$/;"	m	struct:sqlProfile	typeref:struct:sqlProfile::sqlProfile	file:
next	hg/lib/liftOver.c	/^     struct liftRange *next;$/;"	m	struct:liftRange	typeref:struct:liftRange::liftRange	file:
next	hg/lib/lowelabPfamHit.h	/^    struct lowelabPfamHits *next;  \/* Next in singly linked list. *\/$/;"	m	struct:lowelabPfamHits	typeref:struct:lowelabPfamHits::lowelabPfamHits
next	hg/lib/mafGene.c	/^    struct exonInfo *next;$/;"	m	struct:exonInfo	typeref:struct:exonInfo::exonInfo	file:
next	hg/lib/mafGene.c	/^    struct speciesInfo *next;$/;"	m	struct:speciesInfo	typeref:struct:speciesInfo::speciesInfo	file:
next	hg/lib/snoRNAs.h	/^    struct snoRNAs *next;  \/* Next in singly linked list. *\/$/;"	m	struct:snoRNAs	typeref:struct:snoRNAs::snoRNAs
next	inc/ace.h	/^    struct ace *next;$/;"	m	struct:ace	typeref:struct:ace::ace
next	inc/ace.h	/^    struct aceAF *next;$/;"	m	struct:aceAF	typeref:struct:aceAF::aceAF
next	inc/ace.h	/^    struct aceRD *next;$/;"	m	struct:aceRD	typeref:struct:aceRD::aceRD
next	inc/annoColumn.h	/^    struct annoColumn *next;$/;"	m	struct:annoColumn	typeref:struct:annoColumn::annoColumn
next	inc/annoFilter.h	/^    struct annoFilter *next;$/;"	m	struct:annoFilter	typeref:struct:annoFilter::annoFilter
next	inc/annoFormatter.h	/^    struct annoFormatter *next;$/;"	m	struct:annoFormatter	typeref:struct:annoFormatter::annoFormatter
next	inc/annoFormatter.h	/^    struct annoFormatterOption *next;$/;"	m	struct:annoFormatterOption	typeref:struct:annoFormatterOption::annoFormatterOption
next	inc/annoRow.h	/^    struct annoRow *next;$/;"	m	struct:annoRow	typeref:struct:annoRow::annoRow
next	inc/annoStreamer.h	/^    struct annoStreamer *next;$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::annoStreamer
next	inc/apacheLog.h	/^    struct apacheAccessLog *next;$/;"	m	struct:apacheAccessLog	typeref:struct:apacheAccessLog::apacheAccessLog
next	inc/asParse.h	/^    struct asColumn *next;           \/* Next column. *\/$/;"	m	struct:asColumn	typeref:struct:asColumn::asColumn
next	inc/asParse.h	/^    struct asObject *next;$/;"	m	struct:asObject	typeref:struct:asObject::asObject
next	inc/axt.h	/^    struct axt *next;$/;"	m	struct:axt	typeref:struct:axt::axt
next	inc/axt.h	/^    struct axtBundle *next;$/;"	m	struct:axtBundle	typeref:struct:axtBundle::axtBundle
next	inc/axt.h	/^    struct scoreMatrix *next;$/;"	m	struct:axtScoreScheme	typeref:struct:axtScoreScheme::scoreMatrix
next	inc/bPlusTree.h	/^    struct bptFile *next;	\/* Next in list of index files if any. *\/$/;"	m	struct:bptFile	typeref:struct:bptFile::bptFile
next	inc/bamFile.h	/^    struct bamChromInfo *next;$/;"	m	struct:bamChromInfo	typeref:struct:bamChromInfo::bamChromInfo
next	inc/basicBed.h	/^    struct bed *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed	typeref:struct:bed::bed
next	inc/basicBed.h	/^    struct bed3 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed3	typeref:struct:bed3::bed3
next	inc/basicBed.h	/^    struct bed4 *next;  \/* Next in singly linked list. *\/$/;"	m	struct:bed4	typeref:struct:bed4::bed4
next	inc/basicBed.h	/^    struct bedLine *next;	\/* Next in list. *\/$/;"	m	struct:bedLine	typeref:struct:bedLine::bedLine
next	inc/bbiFile.h	/^    struct bbiChromInfo *next;$/;"	m	struct:bbiChromInfo	typeref:struct:bbiChromInfo::bbiChromInfo
next	inc/bbiFile.h	/^    struct bbiChromUsage *next;$/;"	m	struct:bbiChromUsage	typeref:struct:bbiChromUsage::bbiChromUsage
next	inc/bbiFile.h	/^    struct bbiFile *next;	\/* Next in list. *\/$/;"	m	struct:bbiFile	typeref:struct:bbiFile::bbiFile
next	inc/bbiFile.h	/^    struct bbiInterval *next;	\/* Next in list. *\/$/;"	m	struct:bbiInterval	typeref:struct:bbiInterval::bbiInterval
next	inc/bbiFile.h	/^    struct bbiSummary *next;$/;"	m	struct:bbiSummary	typeref:struct:bbiSummary::bbiSummary
next	inc/bbiFile.h	/^    struct bbiZoomLevel *next;		\/* Next in list. *\/$/;"	m	struct:bbiZoomLevel	typeref:struct:bbiZoomLevel::bbiZoomLevel
next	inc/bigBed.h	/^    struct bigBedInterval *next;	\/* Next in list. *\/$/;"	m	struct:bigBedInterval	typeref:struct:bigBedInterval::bigBedInterval
next	inc/bigBed.h	/^    struct ppBed *next;	\/* Next in list. *\/$/;"	m	struct:ppBed	typeref:struct:ppBed::ppBed
next	inc/bigWig.h	/^     struct bigWigValsOnChrom *next;$/;"	m	struct:bigWigValsOnChrom	typeref:struct:bigWigValsOnChrom::bigWigValsOnChrom
next	inc/binRange.h	/^    struct binElement *next;$/;"	m	struct:binElement	typeref:struct:binElement::binElement
next	inc/binRange.h	/^    struct binKeeper *next;$/;"	m	struct:binKeeper	typeref:struct:binKeeper::binKeeper
next	inc/blastParse.h	/^    struct blastBlock *next;$/;"	m	struct:blastBlock	typeref:struct:blastBlock::blastBlock
next	inc/blastParse.h	/^    struct blastFile *next;$/;"	m	struct:blastFile	typeref:struct:blastFile::blastFile
next	inc/blastParse.h	/^    struct blastGappedAli *next;$/;"	m	struct:blastGappedAli	typeref:struct:blastGappedAli::blastGappedAli
next	inc/blastParse.h	/^    struct blastQuery *next;$/;"	m	struct:blastQuery	typeref:struct:blastQuery::blastQuery
next	inc/boxClump.h	/^    struct boxClump *next;	 \/* Next in list. *\/$/;"	m	struct:boxClump	typeref:struct:boxClump::boxClump
next	inc/boxClump.h	/^    struct boxIn *next;		 \/* Next in list. *\/$/;"	m	struct:boxIn	typeref:struct:boxIn::boxIn
next	inc/bwgInternal.h	/^    struct bwgBedGraphItem *next;	\/* Next in list. *\/$/;"	m	struct:bwgBedGraphItem	typeref:struct:bwgBedGraphItem::bwgBedGraphItem
next	inc/bwgInternal.h	/^    struct bwgFixedStepItem *next;	\/* Next in list. *\/$/;"	m	struct:bwgFixedStepItem	typeref:struct:bwgFixedStepItem::bwgFixedStepItem
next	inc/bwgInternal.h	/^    struct bwgSection *next;		\/* Next in list. *\/$/;"	m	struct:bwgSection	typeref:struct:bwgSection::bwgSection
next	inc/bwgInternal.h	/^    struct bwgVariableStepItem *next;	\/* Next in list. *\/$/;"	m	struct:bwgVariableStepItem	typeref:struct:bwgVariableStepItem::bwgVariableStepItem
next	inc/cda.h	/^    struct cdaAli *next;$/;"	m	struct:cdaAli	typeref:struct:cdaAli::cdaAli
next	inc/chain.h	/^    struct cBlock *next;	\/* Next in list. *\/$/;"	m	struct:cBlock	typeref:struct:cBlock::cBlock
next	inc/chain.h	/^    struct chain *next;	  	  \/* Next in list. *\/$/;"	m	struct:chain	typeref:struct:chain::chain
next	inc/cheapcgi.h	/^    struct cgiVar *next;	\/* Next in list. *\/$/;"	m	struct:cgiVar	typeref:struct:cgiVar::cgiVar
next	inc/cirTree.h	/^    struct cirTreeFile *next;	\/* Next in list of index files if any. *\/$/;"	m	struct:cirTreeFile	typeref:struct:cirTreeFile::cirTreeFile
next	inc/common.h	/^    struct slDouble *next;	\/* Next in list. *\/$/;"	m	struct:slDouble	typeref:struct:slDouble::slDouble
next	inc/common.h	/^    struct slInt *next;	\/* Next in list. *\/$/;"	m	struct:slInt	typeref:struct:slInt::slInt
next	inc/common.h	/^    struct slList *next;$/;"	m	struct:slList	typeref:struct:slList::slList
next	inc/common.h	/^    struct slName *next;	\/* Next in list. *\/$/;"	m	struct:slName	typeref:struct:slName::slName
next	inc/common.h	/^    struct slPair *next;	\/* Next in list. *\/$/;"	m	struct:slPair	typeref:struct:slPair::slPair
next	inc/common.h	/^    struct slRef *next;	\/* Next in list. *\/$/;"	m	struct:slRef	typeref:struct:slRef::slRef
next	inc/common.h	/^   struct fileOffsetSize *next;	\/* Next in list. *\/$/;"	m	struct:fileOffsetSize	typeref:struct:fileOffsetSize::fileOffsetSize
next	inc/correlate.h	/^    struct correlate *next;	\/* Next in list *\/$/;"	m	struct:correlate	typeref:struct:correlate::correlate
next	inc/crTree.h	/^    struct crTreeFile *next;	\/* Next in list of index files if any. *\/$/;"	m	struct:crTreeFile	typeref:struct:crTreeFile::crTreeFile
next	inc/crTree.h	/^    struct crTreeItem *next;  \/* Next in singly linked list. *\/$/;"	m	struct:crTreeItem	typeref:struct:crTreeItem::crTreeItem
next	inc/crudeali.h	/^    struct crudeAli *next;$/;"	m	struct:crudeAli	typeref:struct:crudeAli::crudeAli
next	inc/diGraph.h	/^    struct dgConnection *next;  \/* Next in list. *\/$/;"	m	struct:dgConnection	typeref:struct:dgConnection::dgConnection
next	inc/diGraph.h	/^    struct dgEdgeRef *next;	\/* Next in list. *\/$/;"	m	struct:dgEdgeRef	typeref:struct:dgEdgeRef::dgEdgeRef
next	inc/diGraph.h	/^    struct dgNode *next;   \/* Next in master node list. *\/$/;"	m	struct:dgNode	typeref:struct:dgNode::dgNode
next	inc/diGraph.h	/^    struct dgNodeRef *next;	\/* Next in list. *\/$/;"	m	struct:dgNodeRef	typeref:struct:dgNodeRef::dgNodeRef
next	inc/dlist.h	/^    struct dlNode *next;$/;"	m	struct:dlNode	typeref:struct:dlNode::dlNode
next	inc/dnaMotif.h	/^    struct dnaMotif *next;  \/* Next in singly linked list. *\/$/;"	m	struct:dnaMotif	typeref:struct:dnaMotif::dnaMotif
next	inc/dnaseq.h	/^    struct dnaSeq *next;  \/* Next in list. *\/$/;"	m	struct:dnaSeq	typeref:struct:dnaSeq::dnaSeq
next	inc/dtdParse.h	/^    struct dtdAttribute *next;	\/* Next in list. *\/$/;"	m	struct:dtdAttribute	typeref:struct:dtdAttribute::dtdAttribute
next	inc/dtdParse.h	/^    struct dtdElement *next;	\/* Next in list. *\/$/;"	m	struct:dtdElement	typeref:struct:dtdElement::dtdElement
next	inc/dtdParse.h	/^   struct dtdElChild *next;	\/* Next in list. *\/$/;"	m	struct:dtdElChild	typeref:struct:dtdElChild::dtdElChild
next	inc/dystring.h	/^    struct dyString *next;	\/* Next in list. *\/$/;"	m	struct:dyString	typeref:struct:dyString::dyString
next	inc/ens.h	/^    struct ensAnalysis *next;	\/* Next in list *\/$/;"	m	struct:ensAnalysis	typeref:struct:ensAnalysis::ensAnalysis
next	inc/ens.h	/^    struct ensExon *next;		\/* Next in list (in ensGene) *\/$/;"	m	struct:ensExon	typeref:struct:ensExon::ensExon
next	inc/ens.h	/^    struct ensFeature *next;	   \/* Next in list. *\/$/;"	m	struct:ensFeature	typeref:struct:ensFeature::ensFeature
next	inc/ens.h	/^    struct ensGene *next;		  \/* Next in list. *\/$/;"	m	struct:ensGene	typeref:struct:ensGene::ensGene
next	inc/ens.h	/^    struct ensTranscript *next;		\/* Next in list. *\/$/;"	m	struct:ensTranscript	typeref:struct:ensTranscript::ensTranscript
next	inc/errCatch.h	/^    struct errCatch *next;	 \/* Next in stack. *\/$/;"	m	struct:errCatch	typeref:struct:errCatch::errCatch
next	inc/fof.h	/^    struct fofBatch *next;  \/* Next in list. *\/$/;"	m	struct:fofBatch	typeref:struct:fofBatch::fofBatch
next	inc/gdf.h	/^    struct gdfGene *next;$/;"	m	struct:gdfGene	typeref:struct:gdfGene::gdfGene
next	inc/genoFind.h	/^    struct gfClump *next;	\/* Next clump. *\/$/;"	m	struct:gfClump	typeref:struct:gfClump::gfClump
next	inc/genoFind.h	/^    struct gfOutput *next;$/;"	m	struct:gfOutput	typeref:struct:gfOutput::gfOutput
next	inc/genoFind.h	/^    struct gfSeqSource *next;$/;"	m	struct:gfSeqSource	typeref:struct:gfSeqSource::gfSeqSource
next	inc/genoFind.h	/^   struct gfHit *next;$/;"	m	struct:gfHit	typeref:struct:gfHit::gfHit
next	inc/genomeRangeTree.h	/^    struct genomeRangeTree *next;  \/* Next genomeRangeTree in list if any. *\/$/;"	m	struct:genomeRangeTree	typeref:struct:genomeRangeTree::genomeRangeTree
next	inc/gfPcrLib.h	/^    struct gfPcrInput *next;  \/* Next in singly linked list. *\/$/;"	m	struct:gfPcrInput	typeref:struct:gfPcrInput::gfPcrInput
next	inc/gfPcrLib.h	/^    struct gfPcrOutput *next;	\/* Next in list *\/$/;"	m	struct:gfPcrOutput	typeref:struct:gfPcrOutput::gfPcrOutput
next	inc/gfWebLib.h	/^    struct gfServerAt *next;$/;"	m	struct:gfServerAt	typeref:struct:gfServerAt::gfServerAt
next	inc/gff.h	/^    struct gffFeature *next; \/* Next in list. *\/$/;"	m	struct:gffFeature	typeref:struct:gffFeature::gffFeature
next	inc/gff.h	/^    struct gffFile *next;$/;"	m	struct:gffFile	typeref:struct:gffFile::gffFile
next	inc/gff.h	/^    struct gffGeneId *next;  \/* Next in list. *\/$/;"	m	struct:gffGeneId	typeref:struct:gffGeneId::gffGeneId
next	inc/gff.h	/^    struct gffGroup *next;   \/* Next group in file. *\/$/;"	m	struct:gffGroup	typeref:struct:gffGroup::gffGroup
next	inc/gff.h	/^    struct gffLine *next;  \/* Next line in file *\/$/;"	m	struct:gffLine	typeref:struct:gffLine::gffLine
next	inc/gff.h	/^    struct gffSeqName *next;  \/* Next in list. *\/$/;"	m	struct:gffSeqName	typeref:struct:gffSeqName::gffSeqName
next	inc/gff.h	/^    struct gffSource *next; \/* Next in list. *\/$/;"	m	struct:gffSource	typeref:struct:gffSource::gffSource
next	inc/gff3.h	/^    struct gff3AnnRef *next;   \/* next link in the chain *\/$/;"	m	struct:gff3AnnRef	typeref:struct:gff3AnnRef::gff3AnnRef
next	inc/gff3.h	/^    struct gff3Attr *next;     \/* next attribute in the list *\/$/;"	m	struct:gff3Attr	typeref:struct:gff3Attr::gff3Attr
next	inc/gff3.h	/^    struct gff3SeqRegion *next;     \/* next region *\/$/;"	m	struct:gff3SeqRegion	typeref:struct:gff3SeqRegion::gff3SeqRegion
next	inc/gfxPoly.h	/^    struct gfxPoint *next;$/;"	m	struct:gfxPoint	typeref:struct:gfxPoint::gfxPoint
next	inc/gfxPoly.h	/^    struct gfxPoly *next;$/;"	m	struct:gfxPoly	typeref:struct:gfxPoly::gfxPoly
next	inc/hacTree.h	/^    struct hacTree *next;       \/\/ Can have an unordered list of these$/;"	m	struct:hacTree	typeref:struct:hacTree::hacTree
next	inc/hash.h	/^    struct hash *next;	\/* Next in list. *\/$/;"	m	struct:hash	typeref:struct:hash::hash
next	inc/hash.h	/^    struct hashEl *next;$/;"	m	struct:hashEl	typeref:struct:hashEl::hashEl
next	inc/hgGene.h	/^    struct geneFinder *next;  \/* Next in singly linked list. *\/$/;"	m	struct:geneFinder	typeref:struct:geneFinder::geneFinder
next	inc/hgGene.h	/^    struct hgGene *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hgGene	typeref:struct:hgGene::hgGene
next	inc/hgGene.h	/^    struct hgTranscript *next;  \/* Next in singly linked list. *\/$/;"	m	struct:hgTranscript	typeref:struct:hgTranscript::hgTranscript
next	inc/hgap.h	/^    struct hgAliHit *next;$/;"	m	struct:hgAliHit	typeref:struct:hgAliHit::hgAliHit
next	inc/hgap.h	/^    struct hgAlignment *next;$/;"	m	struct:hgAlignment	typeref:struct:hgAlignment::hgAlignment
next	inc/hgap.h	/^    struct hgBac *next;	      \/* Next in list. *\/$/;"	m	struct:hgBac	typeref:struct:hgBac::hgBac
next	inc/hgap.h	/^    struct hgBoundedHit *next;$/;"	m	struct:hgBoundedHit	typeref:struct:hgBoundedHit::hgBoundedHit
next	inc/hgap.h	/^    struct hgContig *next;    \/* Next in list. *\/$/;"	m	struct:hgContig	typeref:struct:hgContig::hgContig
next	inc/hgap.h	/^    struct hgHit *next;   \/* Next in list. *\/$/;"	m	struct:hgHit	typeref:struct:hgHit::hgHit
next	inc/hgap.h	/^    struct hgNest *next;	\/* Pointer to next sibling. *\/$/;"	m	struct:hgNest	typeref:struct:hgNest::hgNest
next	inc/hgap.h	/^    struct hgRange *next; \/* Next in list. *\/$/;"	m	struct:hgRange	typeref:struct:hgRange::hgRange
next	inc/hgap.h	/^    struct hgScoredHit *next;$/;"	m	struct:hgScoredHit	typeref:struct:hgScoredHit::hgScoredHit
next	inc/histogram.h	/^    struct histoResult *next;	\/*	might be a list of them	*\/$/;"	m	struct:histoResult	typeref:struct:histoResult::histoResult
next	inc/hmmPfamParse.h	/^    struct hpfDomain *next;$/;"	m	struct:hpfDomain	typeref:struct:hpfDomain::hpfDomain
next	inc/hmmPfamParse.h	/^    struct hpfModel *next;$/;"	m	struct:hpfModel	typeref:struct:hpfModel::hpfModel
next	inc/hmmPfamParse.h	/^    struct hpfResult *next;$/;"	m	struct:hpfResult	typeref:struct:hpfResult::hpfResult
next	inc/htmlPage.h	/^    struct htmlAttribute *next;$/;"	m	struct:htmlAttribute	typeref:struct:htmlAttribute::htmlAttribute
next	inc/htmlPage.h	/^    struct htmlCookie *next;	\/* Next in list. *\/$/;"	m	struct:htmlCookie	typeref:struct:htmlCookie::htmlCookie
next	inc/htmlPage.h	/^    struct htmlForm *next;	\/* Next form in list. *\/$/;"	m	struct:htmlForm	typeref:struct:htmlForm::htmlForm
next	inc/htmlPage.h	/^    struct htmlFormVar *next;	\/* Next in list. *\/$/;"	m	struct:htmlFormVar	typeref:struct:htmlFormVar::htmlFormVar
next	inc/htmlPage.h	/^    struct htmlPage *next;$/;"	m	struct:htmlPage	typeref:struct:htmlPage::htmlPage
next	inc/htmlPage.h	/^    struct htmlStatus *next;	\/* Next in list. *\/$/;"	m	struct:htmlStatus	typeref:struct:htmlStatus::htmlStatus
next	inc/htmlPage.h	/^    struct htmlTag *next;$/;"	m	struct:htmlTag	typeref:struct:htmlTag::htmlTag
next	inc/itsa.h	/^    struct itsa *next;$/;"	m	struct:itsa	typeref:struct:itsa::itsa
next	inc/kxTok.h	/^    struct kxTok *next;$/;"	m	struct:kxTok	typeref:struct:kxTok::kxTok
next	inc/linefile.h	/^    struct lineFile *next;	\/* Might need to be on a list. *\/$/;"	m	struct:lineFile	typeref:struct:lineFile::lineFile
next	inc/linefile.h	/^    struct metaOutput *next;    \/* next file handle *\/$/;"	m	struct:metaOutput	typeref:struct:metaOutput::metaOutput
next	inc/maDbRep.h	/^    struct mrnaAli *next;  \/* Next in singly linked list. *\/$/;"	m	struct:mrnaAli	typeref:struct:mrnaAli::mrnaAli
next	inc/maf.h	/^    struct mafAli *next;$/;"	m	struct:mafAli	typeref:struct:mafAli::mafAli
next	inc/maf.h	/^    struct mafComp *next;$/;"	m	struct:mafComp	typeref:struct:mafComp::mafComp
next	inc/maf.h	/^    struct mafFile *next;$/;"	m	struct:mafFile	typeref:struct:mafFile::mafFile
next	inc/memalloc.h	/^    struct memHandler *next;$/;"	m	struct:memHandler	typeref:struct:memHandler::memHandler
next	inc/metaWig.h	/^    struct metaWig *next;$/;"	m	struct:metaWig	typeref:struct:metaWig::metaWig
next	inc/mime.h	/^    struct mimePart *next; \/* next (sibling) if is part of multipart *\/$/;"	m	struct:mimePart	typeref:struct:mimePart::mimePart
next	inc/nib.h	/^    struct nibInfo *next;$/;"	m	struct:nibInfo	typeref:struct:nibInfo::nibInfo
next	inc/nibTwo.h	/^    struct nibTwoCache *next;	\/* Next in list *\/$/;"	m	struct:nibTwoCache	typeref:struct:nibTwoCache::nibTwoCache
next	inc/nt4.h	/^    struct nt4Seq *next;	\/* Next in list. *\/$/;"	m	struct:nt4Seq	typeref:struct:nt4Seq::nt4Seq
next	inc/oldGff.h	/^    struct gffGene *next;	\/* This must be first field! *\/$/;"	m	struct:gffGene	typeref:struct:gffGene::gffGene
next	inc/oldGff.h	/^    struct gffSegment *next;	\/* This must be first field! *\/$/;"	m	struct:gffSegment	typeref:struct:gffSegment::gffSegment
next	inc/patSpace.h	/^    struct patClump *next;     \/* Link to next in list. *\/$/;"	m	struct:patClump	typeref:struct:patClump::patClump
next	inc/peakCluster.h	/^    struct peakCluster *next;$/;"	m	struct:peakCluster	typeref:struct:peakCluster::peakCluster
next	inc/peakCluster.h	/^    struct peakClusterMaker *next;$/;"	m	struct:peakClusterMaker	typeref:struct:peakClusterMaker::peakClusterMaker
next	inc/peakCluster.h	/^    struct peakItem *next;$/;"	m	struct:peakItem	typeref:struct:peakItem::peakItem
next	inc/peakCluster.h	/^    struct peakSource *next;$/;"	m	struct:peakSource	typeref:struct:peakSource::peakSource
next	inc/phyloTree.h	/^    struct phyloTree *next;		\/* next in single linked list *\/$/;"	m	struct:phyloTree	typeref:struct:phyloTree::phyloTree
next	inc/portable.h	/^    struct fileInfo  *next;	\/* Next in list. *\/$/;"	m	struct:fileInfo	typeref:struct:fileInfo::fileInfo
next	inc/psPoly.h	/^    struct psPoint *next;$/;"	m	struct:psPoint	typeref:struct:psPoint::psPoint
next	inc/psPoly.h	/^    struct psPoly *next;$/;"	m	struct:psPoly	typeref:struct:psPoly::psPoly
next	inc/pscmGfx.h	/^    struct pscmGfx *next;$/;"	m	struct:pscmGfx	typeref:struct:pscmGfx::pscmGfx
next	inc/psl.h	/^    struct psl *next;  \/* Next in singly linked list. *\/$/;"	m	struct:psl	typeref:struct:psl::psl
next	inc/pslTbl.h	/^    struct pslQuery *next;$/;"	m	struct:pslQuery	typeref:struct:pslQuery::pslQuery
next	inc/pslTbl.h	/^    struct pslTbl *next;               \/* next psl table in a list *\/$/;"	m	struct:pslTbl	typeref:struct:pslTbl::pslTbl
next	inc/qa.h	/^    struct qaStatistics *next;$/;"	m	struct:qaStatistics	typeref:struct:qaStatistics::qaStatistics
next	inc/qa.h	/^    struct qaStatus *next;$/;"	m	struct:qaStatus	typeref:struct:qaStatus::qaStatus
next	inc/rangeTree.h	/^    struct range *next;$/;"	m	struct:range	typeref:struct:range::range
next	inc/rbTree.h	/^    struct rbTree *next;			\/* Next tree in list. *\/$/;"	m	struct:rbTree	typeref:struct:rbTree::rbTree
next	inc/repMask.h	/^    struct repeatMaskOut *next;  \/* Next in singly linked list. *\/$/;"	m	struct:repeatMaskOut	typeref:struct:repeatMaskOut::repeatMaskOut
next	inc/rql.h	/^    char *next;		\/* Next in list *\/$/;"	m	struct:rqlStatement
next	inc/rql.h	/^    struct rqlParse *next;	\/* Points to younger sibling if any. *\/$/;"	m	struct:rqlParse	typeref:struct:rqlParse::rqlParse
next	inc/seg.h	/^	struct segBlock *next;$/;"	m	struct:segBlock	typeref:struct:segBlock::segBlock
next	inc/seg.h	/^	struct segComp *next;$/;"	m	struct:segComp	typeref:struct:segComp::segComp
next	inc/seg.h	/^	struct segFile *next;$/;"	m	struct:segFile	typeref:struct:segFile::segFile
next	inc/shaRes.h	/^    struct shaResNode *next;$/;"	m	struct:shaResNode	typeref:struct:shaResNode::shaResNode
next	inc/spaceSaver.h	/^    struct spaceNode *next;	\/* Next in list. *\/$/;"	m	struct:spaceNode	typeref:struct:spaceNode::spaceNode
next	inc/spaceSaver.h	/^    struct spaceRowTracker *next;	\/* Next in list. *\/$/;"	m	struct:spaceRowTracker	typeref:struct:spaceRowTracker::spaceRowTracker
next	inc/spaceSaver.h	/^    struct spaceSaver *next;	\/* Next in list. *\/$/;"	m	struct:spaceSaver	typeref:struct:spaceSaver::spaceSaver
next	inc/spacedColumn.h	/^    struct spacedColumn *next;$/;"	m	struct:spacedColumn	typeref:struct:spacedColumn::spacedColumn
next	inc/splatAli.h	/^    struct splatAli *next;  \/* Next in singly linked list. *\/$/;"	m	struct:splatAli	typeref:struct:splatAli::splatAli
next	inc/splix.h	/^    struct splix *next;$/;"	m	struct:splix	typeref:struct:splix::splix
next	inc/subText.h	/^    struct subText *next;	\/* pointer to next substitution *\/$/;"	m	struct:subText	typeref:struct:subText::subText
next	inc/sufa.h	/^    struct sufa *next;$/;"	m	struct:sufa	typeref:struct:sufa::sufa
next	inc/sufx.h	/^    struct sufx *next;$/;"	m	struct:sufx	typeref:struct:sufx::sufx
next	inc/supStitch.h	/^    struct ssBundle *next;	\/* Next in list. *\/$/;"	m	struct:ssBundle	typeref:struct:ssBundle::ssBundle
next	inc/supStitch.h	/^    struct ssFfItem *next;      \/* Next in list. *\/$/;"	m	struct:ssFfItem	typeref:struct:ssFfItem::ssFfItem
next	inc/tabRow.h	/^    struct tabRow *next;$/;"	m	struct:tabRow	typeref:struct:tabRow::tabRow
next	inc/trans3.h	/^     struct trans3 *next;		\/* Next in list. *\/$/;"	m	struct:trans3	typeref:struct:trans3::trans3
next	inc/trix.h	/^    struct trixSearchResult *next;$/;"	m	struct:trixSearchResult	typeref:struct:trixSearchResult::trixSearchResult
next	inc/twoBit.h	/^    struct twoBit *next;	\/* Next sequence in list *\/$/;"	m	struct:twoBit	typeref:struct:twoBit::twoBit
next	inc/twoBit.h	/^    struct twoBitFile *next;$/;"	m	struct:twoBitFile	typeref:struct:twoBitFile::twoBitFile
next	inc/twoBit.h	/^    struct twoBitIndex *next;	\/* Next in list. *\/$/;"	m	struct:twoBitIndex	typeref:struct:twoBitIndex::twoBitIndex
next	inc/twoBit.h	/^    struct twoBitSeqSpec *next;$/;"	m	struct:twoBitSeqSpec	typeref:struct:twoBitSeqSpec::twoBitSeqSpec
next	inc/unfin.h	/^    struct contigTree  *next;    \/* Sibling. *\/$/;"	m	struct:contigTree	typeref:struct:contigTree::contigTree
next	inc/vGfx.h	/^    struct vGfx *next;	\/* Next in list. *\/$/;"	m	struct:vGfx	typeref:struct:vGfx::vGfx
next	inc/vcf.h	/^    struct vcfInfoDef *next;$/;"	m	struct:vcfInfoDef	typeref:struct:vcfInfoDef::vcfInfoDef
next	inc/vcf.h	/^    struct vcfRecord *next;$/;"	m	struct:vcfRecord	typeref:struct:vcfRecord::vcfRecord
next	inc/wormdna.h	/^    struct wormFeature *next;$/;"	m	struct:wormFeature	typeref:struct:wormFeature::wormFeature
next	inc/xAli.h	/^    struct xAli *next;  \/* Next in singly linked list. *\/$/;"	m	struct:xAli	typeref:struct:xAli::xAli
next	inc/xa.h	/^    struct xaAli *next;$/;"	m	struct:xaAli	typeref:struct:xaAli::xaAli
next	inc/xp.h	/^    struct xp *next;	\/* Next in list. *\/$/;"	m	struct:xp	typeref:struct:xp::xp
next	jkOwnLib/crudeali.c	/^    struct probeTile *next;$/;"	m	struct:probeTile	typeref:struct:probeTile::probeTile	file:
next	jkOwnLib/ffSeedExtend.c	/^    struct seqHashEl *next;$/;"	m	struct:seqHashEl	typeref:struct:seqHashEl::seqHashEl	file:
next	jkOwnLib/supStitch.c	/^    struct ssEdge *next;         \/* Next edge in waysIn list. *\/$/;"	m	struct:ssEdge	typeref:struct:ssEdge::ssEdge	file:
next	lib/blastOut.c	/^    struct axtRef *next;$/;"	m	struct:axtRef	typeref:struct:axtRef::axtRef	file:
next	lib/blastOut.c	/^    struct targetHits *next;$/;"	m	struct:targetHits	typeref:struct:targetHits::targetHits	file:
next	lib/boxClump.c	/^    struct box *next;		 \/* Next in list (usually on cluster). *\/$/;"	m	struct:box	typeref:struct:box::box	file:
next	lib/boxClump.c	/^    struct boxRef *next;$/;"	m	struct:boxRef	typeref:struct:boxRef::boxRef	file:
next	lib/bwgCreate.c	/^    struct bedGraphChrom *next;		\/* Next in list. *\/$/;"	m	struct:bedGraphChrom	typeref:struct:bedGraphChrom::bedGraphChrom	file:
next	lib/chainBlock.c	/^    struct kdLeaf *next;	\/* Next in list. *\/$/;"	m	struct:kdLeaf	typeref:struct:kdLeaf::kdLeaf	file:
next	lib/cirTree.c	/^    struct rTree *next;	\/* Next on same level. *\/$/;"	m	struct:rTree	typeref:struct:rTree::rTree	file:
next	lib/colHash.h	/^    struct colHashEl *next;	\/* Next in list. *\/$/;"	m	struct:colHashEl	typeref:struct:colHashEl::colHashEl
next	lib/crTree.c	/^    struct name32 *next;$/;"	m	struct:name32	typeref:struct:name32::name32	file:
next	lib/dgRange.c	/^   struct bfEdge *next;    \/* Pointer to next element. *\/$/;"	m	struct:bfEdge	typeref:struct:bfEdge::bfEdge	file:
next	lib/dnaLoad.c	/^    struct dnaLoad *next;	\/* Next loader in list. *\/$/;"	m	struct:dnaLoad	typeref:struct:dnaLoad::dnaLoad	file:
next	lib/dnaLoad.c	/^    struct dnaLoadStack *next;	\/* Next in list. *\/$/;"	m	struct:dnaLoadStack	typeref:struct:dnaLoadStack::dnaLoadStack	file:
next	lib/dnaMotif.c	/^    struct letterProb *next;$/;"	m	struct:letterProb	typeref:struct:letterProb::letterProb	file:
next	lib/fof.c	/^    struct fofRecList *next;$/;"	m	struct:fofRecList	typeref:struct:fofRecList::fofRecList	file:
next	lib/htmlPage.c	/^    struct htmlTable *next;$/;"	m	struct:htmlTable	typeref:struct:htmlTable::htmlTable	file:
next	lib/htmlPage.c	/^    struct htmlTableRow *next;$/;"	m	struct:htmlTableRow	typeref:struct:htmlTableRow::htmlTableRow	file:
next	lib/localmem.c	/^    struct lmBlock *next;$/;"	m	struct:lmBlock	typeref:struct:lmBlock::lmBlock	file:
next	lib/memalloc.c	/^    struct carefulMemBlock *next;$/;"	m	struct:carefulMemBlock	typeref:struct:carefulMemBlock::carefulMemBlock	file:
next	lib/memalloc.c	/^    struct memTracker *next;	 \/* Next in list. *\/$/;"	m	struct:memTracker	typeref:struct:memTracker::memTracker	file:
next	lib/net.c	/^    struct parallelConn *next;  \/* next connection *\/$/;"	m	struct:parallelConn	typeref:struct:parallelConn::parallelConn	file:
next	lib/nib.c	/^    struct nibStream *next;$/;"	m	struct:nibStream	typeref:struct:nibStream::nibStream	file:
next	lib/pairHmm.c	/^    struct phmmAliPair *next;$/;"	m	struct:phmmAliPair	typeref:struct:phmmAliPair::phmmAliPair	file:
next	lib/pipeline.c	/^    struct plProc *next;   \/* order list of processes *\/$/;"	m	struct:plProc	typeref:struct:plProc::plProc	file:
next	lib/snofmake.c	/^    struct offsetList *next;$/;"	m	struct:offsetList	typeref:struct:offsetList::offsetList	file:
next	lib/synQueue.c	/^    struct synQueue *next;	\/* Next in list of queues. *\/$/;"	m	struct:synQueue	typeref:struct:synQueue::synQueue	file:
next	lib/trix.c	/^    struct trixHitPos *next;	\/* Next in list *\/$/;"	m	struct:trixHitPos	typeref:struct:trixHitPos::trixHitPos	file:
next	lib/trix.c	/^    struct trixWordResult *next;$/;"	m	struct:trixWordResult	typeref:struct:trixWordResult::trixWordResult	file:
next	lib/udc.c	/^    struct udcBitmap *next;	\/* Next in list. *\/$/;"	m	struct:udcBitmap	typeref:struct:udcBitmap::udcBitmap	file:
next	lib/udc.c	/^    struct udcFile *next;	\/* Next in list. *\/$/;"	m	struct:udcFile	typeref:struct:udcFile::udcFile	file:
next	lib/udc.c	/^    struct udcProtocol *next;	\/* Next in list *\/$/;"	m	struct:udcProtocol	typeref:struct:udcProtocol::udcProtocol	file:
nextBel	inc/binRange.h	/^    struct binElement *nextBel; \/* next binElement *\/$/;"	m	struct:binKeeperCookie	typeref:struct:binKeeperCookie::binElement
nextBestHist	hg/inc/mammalPsg.h	/^    unsigned nextBestHist;	\/* 2nd most likely history (Bayesian analysis) *\/$/;"	m	struct:mammalPsg
nextBestHistPP	hg/inc/mammalPsg.h	/^    float nextBestHistPP;	\/* Probability of the 2nd most likely history *\/$/;"	m	struct:mammalPsg
nextBlock	lib/blastParse.c	/^static struct blastBlock *nextBlock(struct blastFile *bf, struct blastQuery *bq,$/;"	f	file:
nextBlockLine	lib/blastParse.c	/^static boolean nextBlockLine(struct blastFile *bf, struct blastQuery *bq, char **retLine)$/;"	f	file:
nextCallBack	inc/linefile.h	/^    boolean(*nextCallBack)(struct lineFile *lf, char **retStart, int *retSize); \/\/ next line callback$/;"	m	struct:lineFile
nextEl	inc/hash.h	/^    struct hashEl *nextEl;  \/* current element in hash *\/$/;"	m	struct:hashCookie	typeref:struct:hashCookie::hashEl
nextExp	lib/keys.c	/^static struct exp *nextExp()$/;"	f	file:
nextFramePos	hg/inc/mafFrames.h	/^    int nextFramePos;	\/* target position of the next base (in transcription direction) that continues this frame, or -1 if none, or frame not contiguous *\/$/;"	m	struct:mafFrames
nextId	lib/chain.c	/^static int nextId = 1;$/;"	v	file:
nextLine	lib/maf.c	/^static boolean nextLine(struct lineFile *lf, char **pLine)$/;"	f	file:
nextLine	lib/seg.c	/^static boolean nextLine(struct lineFile *lf, char **pLine)$/;"	f	file:
nextList	inc/diGraph.h	/^    struct dgConnection *nextList;  \/* Ways out of node. *\/$/;"	m	struct:dgNode	typeref:struct:dgNode::dgConnection
nextPart	inc/gff3.h	/^    struct gff3Ann *nextPart; \/* field name next not used to avoid confusion *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3Ann
nextPowerOfFour	lib/dnautil.c	/^int nextPowerOfFour(long x)$/;"	f
nextQuotedWord	lib/obscure.c	/^char *nextQuotedWord(char **pLine)$/;"	f
nextRow	hg/lib/wigDataStream.c	/^static boolean nextRow(struct wiggleDataStream *wds, char *row[], int maxRow)$/;"	f	file:
nextRow	inc/annoStreamer.h	/^    struct annoRow *(*nextRow)(struct annoStreamer *self);$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::nextRow
nextRowUnfiltered	hg/lib/annoStreamDb.c	/^static char **nextRowUnfiltered(struct annoStreamDb *self)$/;"	f	file:
nextRowUnfiltered	lib/annoStreamVcf.c	/^static char **nextRowUnfiltered(struct annoStreamVcf *self)$/;"	f	file:
nextSeqFromMem	lib/fa.c	/^static bioSeq *nextSeqFromMem(char **pText, boolean isDna, boolean doFilter)$/;"	f	file:
nextStringInList	lib/common.c	/^char *nextStringInList(char **pStrings)$/;"	f
nextSubTok	hg/lib/joiner.c	/^static boolean nextSubTok(struct lineFile *lf,$/;"	f	file:
nextSubbedLine	hg/lib/joiner.c	/^static char *nextSubbedLine(struct lineFile *lf, struct hash *hash, $/;"	f	file:
nextTabWord	lib/common.c	/^char *nextTabWord(char **pLine)$/;"	f
nextTok	lib/intExp.c	/^static void nextTok()$/;"	f	file:
nextTok	lib/intExp.c	13;"	d	file:
nextUniqueDefaultTrack	hg/lib/customTrack.c	/^static void nextUniqueDefaultTrack(struct customTrack *ctList)$/;"	f	file:
nextWord	lib/common.c	/^char *nextWord(char **pLine)$/;"	f
nextWordRespectingQuotes	lib/common.c	/^char *nextWordRespectingQuotes(char **pLine)$/;"	f
nextWormCdna	lib/wormdna.c	/^struct dnaSeq *nextWormCdna(struct wormCdnaIterator *it)$/;"	f
nextWormCdnaAndInfo	lib/wormdna.c	/^boolean nextWormCdnaAndInfo(struct wormCdnaIterator *it, struct dnaSeq **retSeq, $/;"	f
nftEqual	hg/inc/bed.h	/^    nftEqual = 3,$/;"	e	enum:numericFilterType
nftGTE	hg/inc/bed.h	/^    nftGTE = 5,$/;"	e	enum:numericFilterType
nftGreaterThan	hg/inc/bed.h	/^    nftGreaterThan = 6,$/;"	e	enum:numericFilterType
nftIgnore	hg/inc/bed.h	/^    nftIgnore = 0,$/;"	e	enum:numericFilterType
nftInRange	hg/inc/bed.h	/^    nftInRange = 7,$/;"	e	enum:numericFilterType
nftLTE	hg/inc/bed.h	/^    nftLTE = 2,$/;"	e	enum:numericFilterType
nftLessThan	hg/inc/bed.h	/^    nftLessThan = 1,$/;"	e	enum:numericFilterType
nftNotEqual	hg/inc/bed.h	/^    nftNotEqual = 4,$/;"	e	enum:numericFilterType
nftNotInRange	hg/inc/bed.h	/^    nftNotInRange = 8,$/;"	e	enum:numericFilterType
ngi	hg/inc/knownInfo.h	/^    char *ngi;	\/* Genbank gi of nucleotide seq. *\/$/;"	m	struct:knownInfo
nibDir	hg/inc/coordConv.h	/^    char *nibDir;	\/** Direcory where nib files for assembly are stored *\/$/;"	m	struct:coordConv
nibDir	hg/inc/hdb.h	/^    char *nibDir;	\/* Directory of sequence files. *\/$/;"	m	struct:blatServerTable
nibGetSize	lib/nib.c	/^int nibGetSize(char* nibFile)$/;"	f
nibHash	inc/nibTwo.h	/^    struct hash *nibHash;	\/* Hash of nibInfo's if any. *\/$/;"	m	struct:nibTwoCache	typeref:struct:nibTwoCache::hash
nibInfo	inc/nib.h	/^struct nibInfo$/;"	s
nibInfoFree	lib/nib.c	/^void nibInfoFree(struct nibInfo **pNib)$/;"	f
nibInfoFromCache	lib/nib.c	/^struct nibInfo *nibInfoFromCache(struct hash *hash, char *nibDir, char *nibName)$/;"	f
nibInfoNew	lib/nib.c	/^struct nibInfo *nibInfoNew(char *path)$/;"	f
nibInput	lib/nib.c	/^static struct dnaSeq *nibInput(int options, char *fileName, char *seqName,$/;"	f	file:
nibIsFile	lib/nib.c	/^boolean nibIsFile(char *fileName)$/;"	f
nibIsRange	lib/nib.c	/^boolean nibIsRange(char *fileName)$/;"	f
nibLdPart	lib/nib.c	/^struct dnaSeq *nibLdPart(char *fileName, FILE *f, int seqSize, int start, int size)$/;"	f
nibLdPartMasked	lib/nib.c	/^struct dnaSeq *nibLdPartMasked(int options, char *fileName, FILE *f, int seqSize, int start, int size)$/;"	f
nibLoadAll	lib/nib.c	/^struct dnaSeq *nibLoadAll(char *fileName)$/;"	f
nibLoadAllMasked	lib/nib.c	/^struct dnaSeq *nibLoadAllMasked(int options, char *fileName)$/;"	f
nibLoadPart	lib/nib.c	/^struct dnaSeq *nibLoadPart(char *fileName, int start, int size)$/;"	f
nibLoadPartMasked	lib/nib.c	/^struct dnaSeq *nibLoadPartMasked(int options, char *fileName, int start, int size)$/;"	f
nibOpenVerify	lib/nib.c	/^void nibOpenVerify(char *fileName, FILE **retFile, int *retSize)$/;"	f
nibOutput	lib/nib.c	/^static void nibOutput(int options, struct dnaSeq *seq, char *fileName)$/;"	f	file:
nibParseName	lib/nib.c	/^void nibParseName(unsigned options, char *fileSpec, char *filePath,$/;"	f
nibPath	hg/inc/dbDb.h	/^    char *nibPath;	\/* Path to packed sequence files *\/$/;"	m	struct:dbDb
nibSig	inc/sig.h	50;"	d
nibSize	inc/trans3.h	/^     int nibSize;			\/* Size of nib file this is embedded in. *\/$/;"	m	struct:trans3
nibStream	lib/nib.c	/^struct nibStream$/;"	s	file:
nibStreamClose	lib/nib.c	/^void nibStreamClose(struct nibStream **pNs)$/;"	f
nibStreamMany	lib/nib.c	/^void nibStreamMany(struct nibStream *ns, DNA *dna, int size)$/;"	f
nibStreamOne	lib/nib.c	/^void nibStreamOne(struct nibStream *ns, DNA base)$/;"	f
nibStreamOpen	lib/nib.c	/^struct nibStream *nibStreamOpen(char *fileName)$/;"	f
nibTwoCache	inc/nibTwo.h	/^struct nibTwoCache$/;"	s
nibTwoCacheFree	lib/nibTwo.c	/^void nibTwoCacheFree(struct nibTwoCache **pNtc)$/;"	f
nibTwoCacheNew	lib/nibTwo.c	/^struct nibTwoCache *nibTwoCacheNew(char *pathName)$/;"	f
nibTwoCacheSeq	lib/nibTwo.c	/^struct dnaSeq *nibTwoCacheSeq(struct nibTwoCache *ntc, char *seqName)$/;"	f
nibTwoCacheSeqPart	lib/nibTwo.c	/^struct dnaSeq *nibTwoCacheSeqPart(struct nibTwoCache *ntc, char *seqName, int start, int size,$/;"	f
nibTwoCacheSeqPartExt	lib/nibTwo.c	/^struct dnaSeq *nibTwoCacheSeqPartExt(struct nibTwoCache *ntc, char *seqName, int start, int size,$/;"	f
nibTwoGetSize	lib/nibTwo.c	/^int nibTwoGetSize(struct nibTwoCache *ntc, char *seqName)$/;"	f
nibTwoLoadOne	lib/nibTwo.c	/^struct dnaSeq *nibTwoLoadOne(char *pathName, char *seqName)$/;"	f
nibWrite	lib/nib.c	/^void nibWrite(struct dnaSeq *seq, char *fileName)$/;"	f
nibWriteMasked	lib/nib.c	/^void nibWriteMasked(int options, struct dnaSeq *seq, char *fileName)$/;"	f
niceGeneName	hg/lib/customFactory.c	/^static char *niceGeneName(char *name)$/;"	f	file:
nlType	inc/linefile.h	/^    enum nlType nlType;         \/* type of line endings: dos, unix, mac or undet *\/$/;"	m	struct:lineFile	typeref:enum:lineFile::nlType
nlType	inc/linefile.h	/^enum nlType {$/;"	g
nlType	lib/mime.c	/^enum nlType nlType = nlt_undet;$/;"	v	typeref:enum:nlType
nlt_dos	inc/linefile.h	/^ nlt_dos,   \/* crlf *\/$/;"	e	enum:nlType
nlt_mac	inc/linefile.h	/^ nlt_mac    \/* cr   *\/$/;"	e	enum:nlType
nlt_undet	inc/linefile.h	/^ nlt_undet, \/* undetermined *\/$/;"	e	enum:nlType
nlt_unix	inc/linefile.h	/^ nlt_unix,  \/* lf   *\/$/;"	e	enum:nlType
nmd	hg/inc/geneCheck.h	/^    char nmd[5];	\/* Is this an NMD candidate: ok or nmd *\/$/;"	m	struct:geneCheck
noBinIndexSql	hg/lib/genePred.c	/^static char *noBinIndexSql = $/;"	v	file:
noDataPoints	hg/inc/wiggle.h	/^    unsigned long long noDataPoints; \/* reading stats, NO_DATA bytes	*\/$/;"	m	struct:wiggleDataStream
noNextRow	lib/annoGrator.c	/^static struct annoRow *noNextRow(struct annoStreamer *self)$/;"	f	file:
noOverlap	hg/inc/wiggle.h	/^    boolean noOverlap;	\/*	enforce no overlapping data verification *\/$/;"	m	struct:wigEncodeOptions
noOverlap	hg/lib/wigAsciiToBinary.c	/^static boolean noOverlap = FALSE;	\/* check for overlapping data *\/$/;"	v	file:
noTabixSupport	lib/linefile.c	/^INLINE void noTabixSupport(struct lineFile *lf, char *where)$/;"	f
noWarnAbort	lib/errabort.c	/^void noWarnAbort()$/;"	f
node	hg/lib/jksql.c	/^    struct dlNode *node;		\/* Pointer to list node we're on. *\/$/;"	m	struct:sqlResult	typeref:struct:sqlResult::dlNode	file:
node	hg/lib/jksql.c	/^    struct dlNode *node;	    \/* Pointer to list node. *\/$/;"	m	struct:sqlConnection	typeref:struct:sqlConnection::dlNode	file:
node	inc/diGraph.h	/^    struct dgNode *node;        \/* Node this connects to. *\/$/;"	m	struct:dgConnection	typeref:struct:dgConnection::dgNode
node	inc/diGraph.h	/^    struct dgNode *node;        \/* Pointer to node. *\/$/;"	m	struct:dgNodeRef	typeref:struct:dgNodeRef::dgNode
node	inc/rudp.h	/^    struct dlNode *node;        \/* List node of packetSeen. *\/$/;"	m	struct:packetSeen	typeref:struct:packetSeen::dlNode
node	lib/boxClump.c	/^    struct dlNode *node;	\/* Position in doubly-linked list. *\/$/;"	m	struct:cluster	typeref:struct:cluster::dlNode	file:
node	lib/dlist.c	/^    struct dlNode *node;$/;"	m	struct:dlSorter	typeref:struct:dlSorter::dlNode	file:
node	lib/hacTree.c	/^    struct hacTree *node;  \/\/ contains itemOrCluster to be compared$/;"	m	struct:sortWrapper	typeref:struct:sortWrapper::hacTree	file:
nodeCount	jkOwnLib/supStitch.c	/^    int nodeCount;		\/* Number of nodes. *\/$/;"	m	struct:ssGraph	file:
nodeHash	inc/diGraph.h	/^    struct hash *nodeHash;$/;"	m	struct:diGraph	typeref:struct:diGraph::hash
nodeHeaderSize	lib/cirTree.c	34;"	d	file:
nodeIn	jkOwnLib/supStitch.c	/^    struct ssNode *nodeIn;       \/* The node that leads to this edge. *\/$/;"	m	struct:ssEdge	typeref:struct:ssEdge::ssNode	file:
nodeList	inc/diGraph.h	/^    struct dgNode *nodeList;$/;"	m	struct:diGraph	typeref:struct:diGraph::dgNode
nodeList	inc/spaceSaver.h	/^    struct spaceNode *nodeList; \/* List of things put in space saver. *\/$/;"	m	struct:spaceSaver	typeref:struct:spaceSaver::spaceNode
nodeNames	lib/phyloTree.c	/^static void nodeNames(struct phyloTree *tree, struct dyString *ds)$/;"	f	file:
nodeScore	jkOwnLib/supStitch.c	/^    int nodeScore;              \/* Score of this node. *\/$/;"	m	struct:ssNode	file:
nodes	hg/inc/genomeRangeTreeFile.h	/^    struct hash *nodes;       \/* hash of (chrom, nodes) *\/$/;"	m	struct:genomeRangeTreeFile	typeref:struct:genomeRangeTreeFile::hash
nodes	jkOwnLib/supStitch.c	/^    struct ssNode *nodes;       \/* Array of nodes. *\/$/;"	m	struct:ssGraph	typeref:struct:ssGraph::ssNode	file:
nonAsciiWorkaround	lib/vcf.c	/^INLINE void nonAsciiWorkaround(char *line)$/;"	f
nonCodingTypeDataName	hg/lib/nonCodingUi.c	/^char *nonCodingTypeDataName[] = {$/;"	v
nonCodingTypeDataNameSize	hg/lib/nonCodingUi.c	/^int nonCodingTypeDataNameSize = ArraySize(nonCodingTypeDataName);$/;"	v
nonCodingTypeIncludeCart	hg/lib/nonCodingUi.c	/^boolean nonCodingTypeIncludeCart[] = {$/;"	v
nonCodingTypeIncludeCartSize	hg/lib/nonCodingUi.c	/^int nonCodingTypeIncludeCartSize = ArraySize(nonCodingTypeIncludeCart);$/;"	v
nonCodingTypeIncludeDefault	hg/lib/nonCodingUi.c	/^boolean nonCodingTypeIncludeDefault[] = {$/;"	v
nonCodingTypeIncludeDefaultSize	hg/lib/nonCodingUi.c	/^int nonCodingTypeIncludeDefaultSize = ArraySize(nonCodingTypeIncludeDefault);$/;"	v
nonCodingTypeIncludeStrings	hg/lib/nonCodingUi.c	/^char *nonCodingTypeIncludeStrings[] = {$/;"	v
nonCodingTypeIncludeStringsSize	hg/lib/nonCodingUi.c	/^int nonCodingTypeIncludeStringsSize = ArraySize(nonCodingTypeIncludeStrings);$/;"	v
nonCodingTypeLabels	hg/lib/nonCodingUi.c	/^char *nonCodingTypeLabels[] = {$/;"	v
nonCodingTypeLabelsSize	hg/lib/nonCodingUi.c	/^int nonCodingTypeLabelsSize = ArraySize(nonCodingTypeLabels);$/;"	v
nonCodingTypeStrings	hg/lib/nonCodingUi.c	/^char *nonCodingTypeStrings[] = {$/;"	v
nonCodingTypeStringsSize	hg/lib/nonCodingUi.c	/^int nonCodingTypeStringsSize = ArraySize(nonCodingTypeStrings);$/;"	v
nonDashCount	lib/xenshow.c	/^static int nonDashCount(char *s, int size)$/;"	f	file:
nonZeroCopy	lib/memgfx.c	/^static void nonZeroCopy(Color *d, Color *s, int width)$/;"	f	file:
non_coding_exon_variant	hg/inc/soterm.h	/^    non_coding_exon_variant=1792,$/;"	e	enum:__anon11
non_synonymous_variant	hg/inc/soterm.h	/^    non_synonymous_variant=1818,$/;"	e	enum:__anon11
none	hg/inc/liftOver.h	/^    none = 0,$/;"	e	enum:liftOverFileType
nonsenseMediatedDecay	hg/inc/txInfo.h	/^    unsigned char nonsenseMediatedDecay;	\/* If true, is a nonsense mediated decay candidate. *\/$/;"	m	struct:txInfo
nonsynonSyn	hg/lib/snp125Ui.c	/^static char *nonsynonSyn[] =$/;"	v	file:
normFactor	inc/peakCluster.h	/^    double normFactor;		\/* Multiply this to get browser score. *\/$/;"	m	struct:peakSource
normMM	hg/inc/affyTransLifted.h	/^    float normMM;	\/* normalized value of MM *\/$/;"	m	struct:affyTransLifted
normPM	hg/inc/affyTransLifted.h	/^    float normPM;	\/* normalized value of PM *\/$/;"	m	struct:affyTransLifted
normalGain	hg/inc/cnpIafrate2.h	/^    unsigned normalGain;	\/* Number of normal individuals with gain *\/$/;"	m	struct:cnpIafrate2
normalLoss	hg/inc/cnpIafrate2.h	/^    unsigned normalLoss;	\/* Number of normal individuals with loss *\/$/;"	m	struct:cnpIafrate2
nosSwap	jkOwnLib/genoFind.c	/^static struct gfHit **nosTemp, *nosSwap;$/;"	v	typeref:struct:	file:
nosTemp	jkOwnLib/genoFind.c	/^static struct gfHit **nosTemp, *nosSwap;$/;"	v	typeref:struct:gfHit	file:
notEmbl	lib/emblParse.c	/^static void notEmbl(char *fileName)$/;"	f	file:
notEqual	hg/inc/mdb.h	/^    boolean notEqual;        \/\/ For querying only$/;"	m	struct:mdbByVar
notEqual	hg/inc/metaTbl.h	/^    boolean notEqual;         \/\/ For querying only$/;"	m	struct:metaByVar
notGoodSubnet	lib/net.c	/^static void notGoodSubnet(char *sns)$/;"	f	file:
notId	hg/inc/goa.h	/^    char *notId;	\/* (Optional) If 'NOT'. Indicates object isn't goId *\/$/;"	m	struct:goa
notId	hg/inc/goaPart.h	/^    char *notId;	\/* (Optional) If 'NOT'. Indicates object isn't goId *\/$/;"	m	struct:goaPart
notSequenced	hg/inc/taxonNode.h	/^    unsigned notSequenced;	\/* 1 if this subtree has no sequence data yet *\/$/;"	m	struct:taxonNode
notSorted	hg/lib/annoStreamDb.c	/^    boolean notSorted;			\/\/ TRUE if table is not sorted (e.g. genbank-updated)$/;"	m	struct:annoStreamDb	file:
notTriple	hg/lib/joiner.c	/^static void notTriple(char *s)$/;"	f	file:
note	hg/inc/ccdsNotes.h	/^    char *note;	\/* text of note *\/$/;"	m	struct:ccdsNotes
note	hg/inc/gbProtAnn.h	/^    char *note;	\/* Note (may be empty) *\/$/;"	m	struct:gbProtAnn
note	hg/inc/kg1ToKg2.h	/^    char *note;	\/* Additional info if status if overlap or none. *\/$/;"	m	struct:kg1ToKg2
note	hg/inc/minGeneInfo.h	/^    char *note;	\/* gene note *\/$/;"	m	struct:minGeneInfo
notes	hg/inc/gbMiscDiff.h	/^    char *notes;	\/* notes *\/$/;"	m	struct:gbMiscDiff
notes	inc/gff3.h	/^    struct slName *notes;  \/* free text notes. *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::slName
now	hg/lib/cart.c	/^static char *now()$/;"	f	file:
npu	lib/net.c	/^struct netParsedUrl npu;$/;"	m	struct:netConnectFtpParams	typeref:struct:netConnectFtpParams::netParsedUrl	file:
nrow	hg/lib/microarray.c	/^    int nrow; $/;"	m	struct:mapArray	file:
nrow	hg/lib/microarray.c	/^    int nrow;$/;"	m	struct:maExpDataMatrix	file:
nt4BaseCount	lib/nt4.c	/^int nt4BaseCount(char *fileName)$/;"	f
nt4Dir	lib/wormdna.c	/^static char *nt4Dir = NULL;$/;"	v	file:
nt4LoadPart	lib/nt4.c	/^DNA *nt4LoadPart(char *fileName, int start, int size)$/;"	f
nt4OpenVerify	lib/nt4.c	/^static FILE *nt4OpenVerify(char *fileName)$/;"	f	file:
nt4Seq	inc/nt4.h	/^struct nt4Seq$/;"	s
nt4Signature	inc/sig.h	33;"	d
nt4Unpack	lib/nt4.c	/^DNA *nt4Unpack(struct nt4Seq *n, int start, int size)$/;"	f
ntChars	lib/dnautil.c	/^char ntChars[256];$/;"	v
ntCompTable	lib/dnautil.c	/^DNA ntCompTable[256];$/;"	v
ntFileNames	lib/flydna.c	/^static char *ntFileNames[] = {"c:\/biodata\/fly\/chrom\/adh.nt"};$/;"	v	file:
ntLookup	jkOwnLib/genoFind.c	/^static int ntLookup[256];$/;"	v	file:
ntMixedCaseChars	lib/dnautil.c	/^char ntMixedCaseChars[256];$/;"	v
ntVal	lib/dnautil.c	/^int ntVal[256];$/;"	v
ntVal5	lib/dnautil.c	/^int ntVal5[256];$/;"	v
ntValLower	lib/dnautil.c	/^int ntValLower[256];	\/* NT values only for lower case. *\/$/;"	v
ntValMasked	lib/dnautil.c	/^int ntValMasked[256];$/;"	v
ntValNoN	lib/dnautil.c	/^int ntValNoN[256]; \/* Like ntVal, but with T_BASE_VAL in place of -1 for nonexistent ones. *\/$/;"	v
ntValUpper	lib/dnautil.c	/^int ntValUpper[256];	\/* NT values only for upper case. *\/$/;"	v
nucSequence	hg/lib/mafGene.c	/^    char *nucSequence;$/;"	m	struct:speciesInfo	file:
nullAllowed	hg/inc/columnInfo.h	/^    char *nullAllowed;	\/* Are NULL values allowed? *\/$/;"	m	struct:columnInfo
nullIfAllSpace	lib/common.c	/^char *nullIfAllSpace(char *s)$/;"	f
nullMiddle	inc/dlist.h	/^    struct dlNode *nullMiddle;$/;"	m	struct:dlList	typeref:struct:dlList::dlNode
num	hg/inc/sageExp.h	/^    int num;	\/* Index of the experiment in the sage table. *\/$/;"	m	struct:sageExp
num	hg/inc/snpExceptions.h	/^    unsigned num;	\/* Count of SNPs that fail this condition *\/$/;"	m	struct:snpExceptions
num1	inc/apacheLog.h	/^    char *num1;		\/* Some number, I'm not sure what it is. *\/$/;"	m	struct:apacheAccessLog
numAlleles	hg/inc/variant.h	/^    unsigned numAlleles;   \/* the number of alleles *\/$/;"	m	struct:variant
numCds	hg/inc/geneCheck.h	/^    unsigned numCds;	\/* number of CDS exons *\/$/;"	m	struct:geneCheck
numCdsIntrons	hg/inc/geneCheck.h	/^    unsigned numCdsIntrons;	\/* number of CDS introns *\/$/;"	m	struct:geneCheck
numChroms	hg/inc/genomeRangeTreeFile.h	/^    bits32 numChroms;$/;"	m	struct:genomeRangeTreeFile
numCols	inc/annoStreamer.h	/^    int numCols;$/;"	m	struct:annoStreamer
numCols	lib/annoStreamVcf.c	/^    int numCols;			\/\/ Number of columns in autoSql def of VCF.$/;"	m	struct:annoStreamVcf	file:
numCombinations	hg/inc/microarray.h	/^    int numCombinations;$/;"	m	struct:microarrayGroups
numCompanies	hg/inc/cutter.h	/^    unsigned numCompanies;	\/* Number of companies selling this enzyme *\/$/;"	m	struct:cutter
numCorrs	hg/inc/llaInfo.h	/^    unsigned numCorrs;	\/* Number of correlations stored *\/$/;"	m	struct:llaInfo
numEdges	inc/phyloTree.h	/^    int numEdges;$/;"	m	struct:phyloTree
numExons	hg/inc/geneCheck.h	/^    unsigned numExons;	\/* number of exons *\/$/;"	m	struct:geneCheck
numExp	hg/inc/exprBed.h	/^    unsigned numExp;	\/* Number of experiments in this bed *\/$/;"	m	struct:exprBed
numExps	hg/inc/sage.h	/^    int numExps;	\/* Number of experiments. *\/$/;"	m	struct:sage
numExps	hg/inc/sageCounts.h	/^    int numExps;	\/* Number of experiments. *\/$/;"	m	struct:sageCounts
numExtras	hg/inc/expRecord.h	/^    unsigned numExtras;	\/* number of extra things *\/$/;"	m	struct:expRecord
numFields	hg/lib/genePredReader.c	/^    unsigned numFields;$/;"	m	struct:genePredReader	file:
numFileCols	lib/annoStreamVcf.c	/^    int numFileCols;			\/\/ Number of columns in VCF file.$/;"	m	struct:annoStreamVcf	file:
numGenbank	hg/inc/imageClone.h	/^    int numGenbank;	\/* number of genbank records *\/$/;"	m	struct:imageClone
numGroups	hg/inc/microarray.h	/^    int numGroups;$/;"	m	struct:maGrouping
numIndependentProbes	hg/inc/affyAllExonProbe.h	/^    unsigned numIndependentProbes;	\/* ??? Totatlly unsure *\/$/;"	m	struct:affyAllExonProbe
numNonOverlapProbes	hg/inc/affyAllExonProbe.h	/^    unsigned numNonOverlapProbes;	\/* ??? Probably related to numIndependentProbes *\/$/;"	m	struct:affyAllExonProbe
numOff	inc/seqOut.h	/^    int numOff;         \/* Number to start with. *\/$/;"	m	struct:cfm
numRefs	hg/inc/cutter.h	/^    unsigned numRefs;	\/* Number of references *\/$/;"	m	struct:cutter
numResizes	inc/hash.h	/^    int numResizes;             \/* number of times resize was called *\/$/;"	m	struct:hash
numRunning	lib/pipeline.c	/^    int numRunning;            \/* number of processes running *\/$/;"	m	struct:pipeline	file:
numSciz	hg/inc/cutter.h	/^    unsigned numSciz;	\/* Number of isoschizomers *\/$/;"	m	struct:cutter
numSubsets	hg/inc/microarray.h	/^    int numSubsets;$/;"	m	struct:microarrayGroups
numTags	hg/inc/sage.h	/^    int numTags;	\/* Number of tags. *\/$/;"	m	struct:sage
numUtr3	hg/inc/geneCheck.h	/^    unsigned numUtr3;	\/* number of 3'UTR exons *\/$/;"	m	struct:geneCheck
numUtr5	hg/inc/geneCheck.h	/^    unsigned numUtr5;	\/* number of 5'UTR exons *\/$/;"	m	struct:geneCheck
numUtrIntrons	hg/inc/geneCheck.h	/^    unsigned numUtrIntrons;	\/* number of UTR introns *\/$/;"	m	struct:geneCheck
numXHybeProbe	hg/inc/affyAllExonProbe.h	/^    unsigned numXHybeProbe;	\/* ??? cross hyb something *\/$/;"	m	struct:affyAllExonProbe
number	lib/intExp.c	/^static double number()$/;"	f	file:
numericFilterType	hg/inc/bed.h	/^enum numericFilterType$/;"	g
numericFiltersShowAll	hg/lib/hui.c	/^static int numericFiltersShowAll(char *db, struct cart *cart, struct trackDb *tdb, boolean *opened, boolean boxed,$/;"	f	file:
nummyName	inc/asParse.h	/^    char *nummyName;               \/* What functions that load a number are called. *\/$/;"	m	struct:asTypeInfo
nxt_fnt	lib/gemfont.h	/^struct font_hdr	*nxt_fnt; \/* Set to 0 *\/$/;"	m	struct:font_hdr	typeref:struct:font_hdr::font_hdr
oChrom	hg/inc/putaInfo.h	/^    char *oChrom;	\/* stamper chrom *\/$/;"	m	struct:putaInfo
oChromEnd	hg/inc/putaInfo.h	/^    unsigned oChromEnd;	\/* stamper chrom end *\/$/;"	m	struct:putaInfo
oChromStart	hg/inc/putaInfo.h	/^    unsigned oChromStart;	\/* stamper chrom start *\/$/;"	m	struct:putaInfo
obName	inc/asParse.h	/^    char *obName;                  \/* Name of object or table. *\/$/;"	m	struct:asColumn
obType	inc/asParse.h	/^    struct asObject *obType;       \/* Name of composite object. *\/$/;"	m	struct:asColumn	typeref:struct:asColumn::asObject
obj	hg/inc/mdb.h	/^    char *obj;	\/* Object name or ID. *\/$/;"	m	struct:mdb
obj	hg/inc/mdb.h	/^    char *obj;               \/\/ Object name or ID$/;"	m	struct:mdbLeafObj
obj	hg/inc/mdb.h	/^    char *obj;               \/\/ Object name or ID$/;"	m	struct:mdbObj
obj	hg/inc/metaTbl.h	/^    char *obj;                \/\/ Object name or ID$/;"	m	struct:metaLeafObj
obj	hg/inc/metaTbl.h	/^    char *obj;                \/\/ Object name or ID$/;"	m	struct:metaObj
objHash	hg/inc/mdb.h	/^    struct hash* objHash;    \/\/ if NOT NULL: hash of objects  (val str to leafObj struct)$/;"	m	struct:mdbLimbVal	typeref:struct:mdbLimbVal::hash
objHash	hg/inc/metaTbl.h	/^    struct hash* objHash;     \/\/ if NOT NULL: hash of objects  (val str to leafObj struct)$/;"	m	struct:metaLimbVal	typeref:struct:metaLimbVal::hash
objName	hg/inc/metaTbl.h	/^    char *objName;          \/\/ Object name or ID.$/;"	m	struct:metaTbl
objType	hg/inc/metaTbl.h	/^    char *objType;          \/\/ table | file$/;"	m	struct:metaTbl
objType	hg/inc/metaTbl.h	/^    enum metaObjType objType; \/\/ table | file$/;"	m	struct:metaLeafObj	typeref:enum:metaLeafObj::metaObjType
objType	hg/inc/metaTbl.h	/^    enum metaObjType objType; \/\/ table | file$/;"	m	struct:metaObj	typeref:enum:metaObj::metaObjType
object	inc/xap.h	/^   void *object;	\/* Object being parsed. *\/$/;"	m	struct:xapStack
objs	hg/inc/mdb.h	/^    struct mdbLeafObj* objs; \/\/ if NOT NULL: list of Objects which have this variable$/;"	m	struct:mdbLimbVal	typeref:struct:mdbLimbVal::mdbLeafObj
objs	hg/inc/metaTbl.h	/^    struct metaLeafObj* objs; \/\/ if NOT NULL: list of Objects which have this variable$/;"	m	struct:metaLimbVal	typeref:struct:metaLimbVal::metaLeafObj
obsExp	hg/inc/cpgIslandExt.h	/^    float obsExp;	\/* Ratio of observed(cpgNum) to expected(numC*numG\/length) CpG in island *\/$/;"	m	struct:cpgIslandExt
observed	hg/inc/hapmapAlleles.h	/^    char *observed;	\/* Observed string from genotype file *\/$/;"	m	struct:hapmapAlleles
observed	hg/inc/hapmapAllelesCombined.h	/^    char *observed;	\/* Observed string from genotype file *\/$/;"	m	struct:hapmapAllelesCombined
observed	hg/inc/hapmapAllelesOrtho.h	/^    char *observed;	\/* dbSNP polymorphism *\/$/;"	m	struct:hapmapAllelesOrtho
observed	hg/inc/hapmapAllelesSummary.h	/^    char *observed;	\/* Observed string from genotype file *\/$/;"	m	struct:hapmapAllelesSummary
observed	hg/inc/hapmapPhaseIIISummary.h	/^    char *observed;	\/* Observed string from genotype file *\/$/;"	m	struct:hapmapPhaseIIISummary
observed	hg/inc/hapmapSnps.h	/^    char *observed;	\/* Observed string from genotype file *\/$/;"	m	struct:hapmapSnps
observed	hg/inc/hapmapSnpsCombined.h	/^    char *observed;	\/* Observed string from genotype file *\/$/;"	m	struct:hapmapSnpsCombined
observed	hg/inc/snp.h	/^    char *observed;	\/* The sequences of the observed alleles *\/$/;"	m	struct:snp
observed	hg/inc/snp125.h	/^    char *observed;	\/* The sequences of the observed alleles from rs-fasta files *\/$/;"	m	struct:snp125
observed	hg/inc/snp125.h	/^    char *observed;	\/* The sequences of the observed alleles from rs-fasta files *\/$/;"	m	struct:snp125Extended
observed	hg/inc/snp132Ext.h	/^    char *observed;	\/* The sequences of the observed alleles from rs-fasta files *\/$/;"	m	struct:snp132Ext
observed	hg/inc/snpFasta.h	/^    char *observed;	\/* The sequences of the observed alleles from rs-fasta files *\/$/;"	m	struct:snpFasta
offset	hg/inc/chromGraph.h	/^    bits64 offset;		\/* Offset to start of chrom in file *\/$/;"	m	struct:cgbChrom
offset	hg/inc/customTrack.h	/^    int offset;			\/* Base offset. *\/$/;"	m	struct:customTrack
offset	hg/inc/genomeRangeTreeFile.h	/^    struct hash *offset;      \/* hash of (chrom, offset) *\/$/;"	m	struct:genomeRangeTreeFile	typeref:struct:genomeRangeTreeFile::hash
offset	hg/inc/liftUp.h	/^    int offset;			\/* Offset to add. *\/$/;"	m	struct:liftSpec
offset	hg/inc/scoredRef.h	/^    long long offset;	\/* Offset in external file *\/$/;"	m	struct:scoredRef
offset	hg/inc/wiggle.h	/^    int offset;			\/*	offset to add to positions on output *\/$/;"	m	struct:wiggleDataStream
offset	hg/inc/wiggle.h	/^    unsigned offset;	\/* offset in File to fetch data *\/$/;"	m	struct:wiggle
offset	hg/lib/chromGraph.c	/^    bits64 offset;		\/* Offset to start of chrom in file *\/$/;"	m	struct:cInfo	file:
offset	inc/bbiFile.h	/^    bits64 offset;		\/* Offset within file. *\/$/;"	m	struct:bbiBoundsArray
offset	inc/common.h	/^   bits64	offset;		\/* Start offset of block. *\/$/;"	m	struct:fileOffsetSize
offset	inc/fof.h	/^    bits32 offset;          \/* Offset in file - filled in by server. *\/$/;"	m	struct:fofBatch
offset	inc/fof.h	/^    bits32 offset;        \/* Offset within file. *\/$/;"	m	struct:fofPos
offset	inc/hgap.h	/^    int offset;			\/* Offset relative to parent. *\/$/;"	m	struct:hgNest
offset	inc/twoBit.h	/^    bits32 offset;		\/* Offset in file. *\/$/;"	m	struct:twoBitIndex
offset	jkOwnLib/crudeali.c	/^    int offset;$/;"	m	struct:probeTile	file:
offset	jkOwnLib/patSpace.c	/^    int offset;         \/* Start position of block within subsequence. *\/$/;"	m	struct:blockPos	file:
offset	lib/fof.c	/^    bits32 offset;  \/* Start offset within file. Must be first element.*\/$/;"	m	struct:fofRecord	file:
offset	lib/snofmake.c	/^    unsigned offset;$/;"	m	struct:offsetList	file:
offset	lib/udc.c	/^    bits64 offset;		\/* Current file offset of socket. *\/$/;"	m	struct:connInfo	file:
offset	lib/udc.c	/^    bits64 offset;		\/* Current offset in file. *\/$/;"	m	struct:udcFile	file:
offsetList	lib/snofmake.c	/^struct offsetList$/;"	s	file:
offsetsFromExons	lib/oldGff.c	/^static void offsetsFromExons(struct gffGene *gene)$/;"	f	file:
offspring	hg/inc/delConrad2.h	/^    char *offspring;	\/* HapMap identifier *\/$/;"	m	struct:delConrad2
oldChrom	hg/inc/kg1ToKg2.h	/^    char *oldChrom;	\/* Old chromosome  *\/$/;"	m	struct:kg1ToKg2
oldEnd	hg/inc/kg1ToKg2.h	/^    int oldEnd;	\/* Old end position *\/$/;"	m	struct:kg1ToKg2
oldId	hg/inc/kg1ToKg2.h	/^    char *oldId;	\/* Old gene ID *\/$/;"	m	struct:kg1ToKg2
oldIntronCount	hg/inc/pseudoGeneLink.h	/^    int oldIntronCount;	\/* old simple intron count *\/$/;"	m	struct:pseudoGeneLink
oldIntronCount	hg/inc/retroMrnaInfo.h	/^    int oldIntronCount;	\/* old simple intron count col37 *\/$/;"	m	struct:retroMrnaInfo
oldIntronCount	hg/inc/ucscRetroInfo.h	/^    int oldIntronCount;	\/* old simple intron count col35 *\/$/;"	m	struct:ucscRetroInfo
oldName	hg/inc/liftUp.h	/^    char *oldName;		\/* Name in source file. *\/$/;"	m	struct:liftSpec
oldScore	hg/inc/pseudoGeneLink.h	/^    unsigned oldScore;	\/* another heuristic *\/$/;"	m	struct:pseudoGeneLink
oldScore	hg/inc/retroMrnaInfo.h	/^    unsigned oldScore;	\/* another heuristic col36 *\/$/;"	m	struct:retroMrnaInfo
oldScore	hg/inc/ucscRetroInfo.h	/^    unsigned oldScore;	\/* another heuristic col34 *\/$/;"	m	struct:ucscRetroInfo
oldSize	hg/inc/liftUp.h	/^    int oldSize;                \/* Size of old sequence. *\/$/;"	m	struct:liftSpec
oldSpDisplayId	hg/lib/spDb.c	/^char *oldSpDisplayId(char *newSpDisplayId)$/;"	f
oldStart	hg/inc/kg1ToKg2.h	/^    int oldStart;	\/* Old start position *\/$/;"	m	struct:kg1ToKg2
oligoDg	lib/oligoTm.c	/^double oligoDg(char *dna)$/;"	f
oligoMatchDefault	hg/inc/hui.h	85;"	d
oligoMatchVar	hg/inc/hui.h	84;"	d
oligoProb	jkOwnLib/fuzzyFind.c	/^static double oligoProb(DNA *oligo, int size, double freq[4])$/;"	f	file:
oligoTm	lib/oligoTm.c	/^double oligoTm(char *dna, double DNA_nM, double K_mM)$/;"	f
omiciaAttr	hg/inc/omicia.h	/^struct omiciaAttr$/;"	s
omiciaAttrCommaIn	hg/lib/omicia.c	/^struct omiciaAttr *omiciaAttrCommaIn(char **pS, struct omiciaAttr *ret)$/;"	f
omiciaAttrCommaOut	hg/inc/omicia.h	327;"	d
omiciaAttrFree	hg/lib/omicia.c	/^void omiciaAttrFree(struct omiciaAttr **pEl)$/;"	f
omiciaAttrFreeList	hg/lib/omicia.c	/^void omiciaAttrFreeList(struct omiciaAttr **pList)$/;"	f
omiciaAttrLoad	hg/lib/omicia.c	/^struct omiciaAttr *omiciaAttrLoad(char **row)$/;"	f
omiciaAttrLoadAll	hg/lib/omicia.c	/^struct omiciaAttr *omiciaAttrLoadAll(char *fileName) $/;"	f
omiciaAttrLoadAllByChar	hg/lib/omicia.c	/^struct omiciaAttr *omiciaAttrLoadAllByChar(char *fileName, char chopper) $/;"	f
omiciaAttrLoadAllByTab	hg/inc/omicia.h	280;"	d
omiciaAttrLoadByQuery	hg/lib/omicia.c	/^struct omiciaAttr *omiciaAttrLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
omiciaAttrOutput	hg/lib/omicia.c	/^void omiciaAttrOutput(struct omiciaAttr *el, FILE *f, char sep, char lastSep) $/;"	f
omiciaAttrSaveToDb	hg/lib/omicia.c	/^void omiciaAttrSaveToDb(struct sqlConnection *conn, struct omiciaAttr *el, char *tableName, int updateSize)$/;"	f
omiciaAttrSaveToDbEscaped	hg/lib/omicia.c	/^void omiciaAttrSaveToDbEscaped(struct sqlConnection *conn, struct omiciaAttr *el, char *tableName, int updateSize)$/;"	f
omiciaAttrStaticLoad	hg/lib/omicia.c	/^void omiciaAttrStaticLoad(char **row, struct omiciaAttr *ret)$/;"	f
omiciaAttrTabOut	hg/inc/omicia.h	324;"	d
omiciaAuto	hg/inc/omicia.h	/^struct omiciaAuto$/;"	s
omiciaAutoCommaIn	hg/lib/omicia.c	/^struct omiciaAuto *omiciaAutoCommaIn(char **pS, struct omiciaAuto *ret)$/;"	f
omiciaAutoCommaOut	hg/inc/omicia.h	90;"	d
omiciaAutoFree	hg/lib/omicia.c	/^void omiciaAutoFree(struct omiciaAuto **pEl)$/;"	f
omiciaAutoFreeList	hg/lib/omicia.c	/^void omiciaAutoFreeList(struct omiciaAuto **pList)$/;"	f
omiciaAutoLoad	hg/lib/omicia.c	/^struct omiciaAuto *omiciaAutoLoad(char **row)$/;"	f
omiciaAutoLoadAll	hg/lib/omicia.c	/^struct omiciaAuto *omiciaAutoLoadAll(char *fileName) $/;"	f
omiciaAutoLoadAllByChar	hg/lib/omicia.c	/^struct omiciaAuto *omiciaAutoLoadAllByChar(char *fileName, char chopper) $/;"	f
omiciaAutoLoadAllByTab	hg/inc/omicia.h	43;"	d
omiciaAutoLoadByQuery	hg/lib/omicia.c	/^struct omiciaAuto *omiciaAutoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
omiciaAutoOutput	hg/lib/omicia.c	/^void omiciaAutoOutput(struct omiciaAuto *el, FILE *f, char sep, char lastSep) $/;"	f
omiciaAutoSaveToDb	hg/lib/omicia.c	/^void omiciaAutoSaveToDb(struct sqlConnection *conn, struct omiciaAuto *el, char *tableName, int updateSize)$/;"	f
omiciaAutoSaveToDbEscaped	hg/lib/omicia.c	/^void omiciaAutoSaveToDbEscaped(struct sqlConnection *conn, struct omiciaAuto *el, char *tableName, int updateSize)$/;"	f
omiciaAutoStaticLoad	hg/lib/omicia.c	/^void omiciaAutoStaticLoad(char **row, struct omiciaAuto *ret)$/;"	f
omiciaAutoTabOut	hg/inc/omicia.h	87;"	d
omiciaDisclaimer	hg/lib/omiciaUi.c	/^void omiciaDisclaimer ()$/;"	f
omiciaHand	hg/inc/omicia.h	/^struct omiciaHand$/;"	s
omiciaHandCommaIn	hg/lib/omicia.c	/^struct omiciaHand *omiciaHandCommaIn(char **pS, struct omiciaHand *ret)$/;"	f
omiciaHandCommaOut	hg/inc/omicia.h	171;"	d
omiciaHandFree	hg/lib/omicia.c	/^void omiciaHandFree(struct omiciaHand **pEl)$/;"	f
omiciaHandFreeList	hg/lib/omicia.c	/^void omiciaHandFreeList(struct omiciaHand **pList)$/;"	f
omiciaHandLoad	hg/lib/omicia.c	/^struct omiciaHand *omiciaHandLoad(char **row)$/;"	f
omiciaHandLoadAll	hg/lib/omicia.c	/^struct omiciaHand *omiciaHandLoadAll(char *fileName) $/;"	f
omiciaHandLoadAllByChar	hg/lib/omicia.c	/^struct omiciaHand *omiciaHandLoadAllByChar(char *fileName, char chopper) $/;"	f
omiciaHandLoadAllByTab	hg/inc/omicia.h	124;"	d
omiciaHandLoadByQuery	hg/lib/omicia.c	/^struct omiciaHand *omiciaHandLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
omiciaHandOutput	hg/lib/omicia.c	/^void omiciaHandOutput(struct omiciaHand *el, FILE *f, char sep, char lastSep) $/;"	f
omiciaHandSaveToDb	hg/lib/omicia.c	/^void omiciaHandSaveToDb(struct sqlConnection *conn, struct omiciaHand *el, char *tableName, int updateSize)$/;"	f
omiciaHandSaveToDbEscaped	hg/lib/omicia.c	/^void omiciaHandSaveToDbEscaped(struct sqlConnection *conn, struct omiciaHand *el, char *tableName, int updateSize)$/;"	f
omiciaHandStaticLoad	hg/lib/omicia.c	/^void omiciaHandStaticLoad(char **row, struct omiciaHand *ret)$/;"	f
omiciaHandTabOut	hg/inc/omicia.h	168;"	d
omiciaLink	hg/inc/omicia.h	/^struct omiciaLink$/;"	s
omiciaLinkCommaIn	hg/lib/omicia.c	/^struct omiciaLink *omiciaLinkCommaIn(char **pS, struct omiciaLink *ret)$/;"	f
omiciaLinkCommaOut	hg/inc/omicia.h	250;"	d
omiciaLinkFree	hg/lib/omicia.c	/^void omiciaLinkFree(struct omiciaLink **pEl)$/;"	f
omiciaLinkFreeList	hg/lib/omicia.c	/^void omiciaLinkFreeList(struct omiciaLink **pList)$/;"	f
omiciaLinkLoad	hg/lib/omicia.c	/^struct omiciaLink *omiciaLinkLoad(char **row)$/;"	f
omiciaLinkLoadAll	hg/lib/omicia.c	/^struct omiciaLink *omiciaLinkLoadAll(char *fileName) $/;"	f
omiciaLinkLoadAllByChar	hg/lib/omicia.c	/^struct omiciaLink *omiciaLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
omiciaLinkLoadAllByTab	hg/inc/omicia.h	203;"	d
omiciaLinkLoadByQuery	hg/lib/omicia.c	/^struct omiciaLink *omiciaLinkLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
omiciaLinkOutput	hg/lib/omicia.c	/^void omiciaLinkOutput(struct omiciaLink *el, FILE *f, char sep, char lastSep) $/;"	f
omiciaLinkSaveToDb	hg/lib/omicia.c	/^void omiciaLinkSaveToDb(struct sqlConnection *conn, struct omiciaLink *el, char *tableName, int updateSize)$/;"	f
omiciaLinkSaveToDbEscaped	hg/lib/omicia.c	/^void omiciaLinkSaveToDbEscaped(struct sqlConnection *conn, struct omiciaLink *el, char *tableName, int updateSize)$/;"	f
omiciaLinkStaticLoad	hg/lib/omicia.c	/^void omiciaLinkStaticLoad(char **row, struct omiciaLink *ret)$/;"	f
omiciaLinkTabOut	hg/inc/omicia.h	247;"	d
omimDisease	hg/inc/pgSiftPred.h	/^    char *omimDisease;	\/* OMIM disease *\/$/;"	m	struct:pgSiftPred
omimId	hg/inc/knownMore.h	/^    unsigned omimId;	\/* OMIM ID or 0 if none *\/$/;"	m	struct:knownMore
omimId	hg/inc/omimTitle.h	/^    int omimId;	\/* OMIM ID *\/$/;"	m	struct:omimTitle
omimId	hg/inc/refLink.h	/^    unsigned omimId;	\/* OMIM ID *\/$/;"	m	struct:refLink
omimMapped	hg/inc/hgnc.h	/^    char *omimMapped;	\/* OMIM ID (mapped data) *\/$/;"	m	struct:hgnc
omimName	hg/inc/knownMore.h	/^    char *omimName;	\/* OMIM primary name *\/$/;"	m	struct:knownMore
omimPhenotypeClassColName	hg/inc/omim.h	6;"	d
omimTitle	hg/inc/omimTitle.h	/^struct omimTitle$/;"	s
omimTitleCommaIn	hg/lib/omimTitle.c	/^struct omimTitle *omimTitleCommaIn(char **pS, struct omimTitle *ret)$/;"	f
omimTitleCommaOut	hg/inc/omimTitle.h	58;"	d
omimTitleFree	hg/lib/omimTitle.c	/^void omimTitleFree(struct omimTitle **pEl)$/;"	f
omimTitleFreeList	hg/lib/omimTitle.c	/^void omimTitleFreeList(struct omimTitle **pList)$/;"	f
omimTitleLoad	hg/lib/omimTitle.c	/^struct omimTitle *omimTitleLoad(char **row)$/;"	f
omimTitleLoadAll	hg/lib/omimTitle.c	/^struct omimTitle *omimTitleLoadAll(char *fileName) $/;"	f
omimTitleLoadAllByChar	hg/lib/omimTitle.c	/^struct omimTitle *omimTitleLoadAllByChar(char *fileName, char chopper) $/;"	f
omimTitleLoadAllByTab	hg/inc/omimTitle.h	36;"	d
omimTitleOutput	hg/lib/omimTitle.c	/^void omimTitleOutput(struct omimTitle *el, FILE *f, char sep, char lastSep) $/;"	f
omimTitleStaticLoad	hg/lib/omimTitle.c	/^void omimTitleStaticLoad(char **row, struct omimTitle *ret)$/;"	f
omimTitleTabOut	hg/inc/omimTitle.h	55;"	d
omitBin	hg/lib/annoStreamDb.c	/^    boolean omitBin;			\/\/ 1 if table hasBin and autoSql doesn't have bin$/;"	m	struct:annoStreamDb	file:
on	hg/inc/hgMaf.h	/^    boolean on;$/;"	m	struct:wigMafSpecies
onChangeEnd	hg/lib/pal.c	/^static char *onChangeEnd(struct dyString **pDy)$/;"	f	file:
onChangeGenome	hg/lib/pal.c	/^static char *onChangeGenome()$/;"	f	file:
onChangeStart	hg/lib/pal.c	/^static struct dyString *onChangeStart()$/;"	f	file:
onStudy	hg/inc/ispyTables.h	/^struct onStudy$/;"	s
onStudyCommaIn	hg/lib/ispyTables.c	/^struct onStudy *onStudyCommaIn(char **pS, struct onStudy *ret)$/;"	f
onStudyCommaOut	hg/inc/ispyTables.h	336;"	d
onStudyFree	hg/lib/ispyTables.c	/^void onStudyFree(struct onStudy **pEl)$/;"	f
onStudyFreeList	hg/lib/ispyTables.c	/^void onStudyFreeList(struct onStudy **pList)$/;"	f
onStudyLoadAll	hg/lib/ispyTables.c	/^struct onStudy *onStudyLoadAll(char *fileName) $/;"	f
onStudyLoadAllByChar	hg/lib/ispyTables.c	/^struct onStudy *onStudyLoadAllByChar(char *fileName, char chopper) $/;"	f
onStudyLoadAllByTab	hg/inc/ispyTables.h	289;"	d
onStudyLoadByQuery	hg/lib/ispyTables.c	/^struct onStudy *onStudyLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
onStudyLoadWithNull	hg/lib/ispyTables.c	/^struct onStudy *onStudyLoadWithNull(char **row)$/;"	f
onStudyOutput	hg/lib/ispyTables.c	/^void onStudyOutput(struct onStudy *el, FILE *f, char sep, char lastSep) $/;"	f
onStudySaveToDb	hg/lib/ispyTables.c	/^void onStudySaveToDb(struct sqlConnection *conn, struct onStudy *el, char *tableName, int updateSize)$/;"	f
onStudySaveToDbEscaped	hg/lib/ispyTables.c	/^void onStudySaveToDbEscaped(struct sqlConnection *conn, struct onStudy *el, char *tableName, int updateSize)$/;"	f
onStudyStaticLoadWithNull	hg/lib/ispyTables.c	/^void onStudyStaticLoadWithNull(char **row, struct onStudy *ret)$/;"	f
onStudyTabOut	hg/inc/ispyTables.h	333;"	d
on_off_buf	lib/mgPolygon.c	/^static UBYTE *on_off_buf;	\/* Our bitplane. *\/$/;"	v	file:
oneBit	lib/bits.c	/^static Bits oneBit[8] = { 0x80, 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1};$/;"	v	file:
oneMrnaFilterUi	hg/lib/hui.c	/^void oneMrnaFilterUi(struct controlGrid *cg, struct trackDb *tdb, char *text, char *var, char *suffix, struct cart *cart)$/;"	f
oneOrg	hg/lib/hgMaf.c	/^struct oneOrg$/;"	s	file:
oneOrgCmp	hg/lib/hgMaf.c	/^static int oneOrgCmp(const void *va, const void *vb)$/;"	f	file:
oneOverSqrtTwoPi	lib/hmmstats.c	/^double oneOverSqrtTwoPi = 0.39894228;$/;"	v
ontologyTerms	inc/gff3.h	/^    struct slName *ontologyTerms; \/* cross reference to ontology terms. *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::slName
ooToAllContigs	hg/lib/ooUtils.c	/^void ooToAllContigs(char *ooDir, void (*doContig)(char *dir, char *chrom, char *contig))$/;"	f
oocMaskCounts	jkOwnLib/ooc.c	/^void oocMaskCounts(char *oocFile, bits32 *tileCounts, int tileSize, bits32 maxPat)$/;"	f
oocMaskSimpleRepeats	jkOwnLib/ooc.c	/^void oocMaskSimpleRepeats(bits32 *tileCounts, int seedSize, bits32 maxPat)$/;"	f
oocSig	inc/sig.h	39;"	d
oocSigSwapped	inc/sig.h	43;"	d
op	inc/annoFilter.h	/^    enum annoFilterOp op;	\/\/ Action to be performed$/;"	m	struct:annoFilter	typeref:enum:annoFilter::annoFilterOp
op	inc/rql.h	/^    enum rqlOp op;		\/* Operation at this node. *\/$/;"	m	struct:rqlParse	typeref:enum:rqlParse::rqlOp
openFtpControlSocket	lib/net.c	/^static int openFtpControlSocket(char *host, int port, char *user, char *password)$/;"	f	file:
openRead	lib/pipeline.c	/^static int openRead(char *fname)$/;"	f	file:
openSslInit	lib/https.c	/^void openSslInit()$/;"	f
openWibFile	hg/lib/wigDataStream.c	/^static void openWibFile(struct wiggleDataStream *wds, char *file)$/;"	f	file:
openWibFile	hg/lib/wiggleUtils.c	/^static void openWibFile(char *fileName)$/;"	f	file:
openWigConn	hg/lib/wigDataStream.c	/^static void openWigConn(struct wiggleDataStream *wds)$/;"	f	file:
openWrite	lib/pipeline.c	/^static int openWrite(char *fname, boolean append)$/;"	f	file:
openssl_id_callback	lib/https.c	/^static unsigned long openssl_id_callback(void)$/;"	f	file:
openssl_locking_callback	lib/https.c	/^static void openssl_locking_callback(int mode, int n, const char * file, int line)$/;"	f	file:
openssl_pthread_setup	lib/https.c	/^void openssl_pthread_setup(void)$/;"	f
optFields	hg/inc/genePred.h	/^    unsigned optFields;           \/* which optional fields are used (not in$/;"	m	struct:genePred
optFields	hg/lib/genePredReader.c	/^    unsigned optFields;     \/* optional fields being included from DB *\/$/;"	m	struct:genePredReader	file:
optFieldsToNumFields	hg/lib/genePredReader.c	/^static int optFieldsToNumFields(unsigned optFields)$/;"	f	file:
optFlag	hg/lib/genePredReader.c	/^    unsigned optFlag;$/;"	m	struct:field	file:
optGet	lib/options.c	/^static char *optGet(char *name)$/;"	f	file:
optionDouble	lib/options.c	/^double optionDouble(char *name, double defaultVal)$/;"	f
optionExists	lib/options.c	/^boolean optionExists(char *name)$/;"	f
optionFloat	lib/options.c	/^float optionFloat(char *name, float defaultVal)$/;"	f
optionFree	lib/options.c	/^void optionFree()$/;"	f
optionHash	lib/options.c	/^void optionHash(int *pArgc, char *argv[])$/;"	f
optionHashSome	lib/options.c	/^void optionHashSome(int *pArgc, char *argv[], boolean justFirst)$/;"	f
optionInit	lib/options.c	/^void optionInit(int *pArgc, char *argv[], struct optionSpec *optionSpecs)$/;"	f
optionInt	lib/options.c	/^int optionInt(char *name, int defaultVal)$/;"	f
optionLongLong	lib/options.c	/^long long optionLongLong(char *name, long long defaultVal)$/;"	f
optionMultiVal	lib/options.c	/^struct slName *optionMultiVal(char *name, struct slName *defaultVal)$/;"	f
optionMustExist	lib/options.c	/^void optionMustExist(char *name)$/;"	f
optionParseIntoHash	lib/options.c	/^struct hash *optionParseIntoHash(int *pArgc, char *argv[], boolean justFirst)$/;"	f
optionSpec	inc/options.h	/^struct optionSpec$/;"	s
optionSpecification	lib/options.c	/^static struct optionSpec *optionSpecification = NULL;$/;"	v	typeref:struct:optionSpec	file:
optionVal	lib/options.c	/^char *optionVal(char *name, char *defaultVal)$/;"	f
optional	hg/inc/coordConv.h	/^    char *optional;	\/** Optional Information *\/$/;"	m	struct:coordConv
options	inc/annoFormatter.h	/^    struct annoFormatterOption *options;$/;"	m	struct:annoFormatter	typeref:struct:annoFormatter::annoFormatterOption
options	lib/options.c	/^static struct hash *options = NULL;$/;"	v	typeref:struct:hash	file:
options	lib/pipeline.c	/^    unsigned options;          \/* options *\/$/;"	m	struct:pipeline	file:
orOrBeta	hg/inc/gwasCatalog.h	/^    char *orOrBeta;	\/* Odds ratio or beta *\/$/;"	m	struct:gwasCatalog
order	hg/inc/hui.h	/^    int*  order;  \/\/ 1 based$/;"	m	struct:_sortOrder
order	hg/lib/hgMaf.c	/^    int order;		\/* Help sort organisms. *\/$/;"	m	struct:oneOrg	file:
orderKey	hg/inc/dbDb.h	/^    int orderKey;	\/* Int used to control display order within a genome *\/$/;"	m	struct:dbDb
orderedSpan	inc/trix.h	/^    int orderedSpan;            \/* Minimum span in single doc with words in search order. *\/$/;"	m	struct:trixSearchResult
oreganno	hg/inc/oreganno.h	/^struct oreganno$/;"	s
oregannoAttr	hg/inc/oreganno.h	/^struct oregannoAttr$/;"	s
oregannoAttrCommaIn	hg/lib/oreganno.c	/^struct oregannoAttr *oregannoAttrCommaIn(char **pS, struct oregannoAttr *ret)$/;"	f
oregannoAttrCommaOut	hg/inc/oreganno.h	167;"	d
oregannoAttrFree	hg/lib/oreganno.c	/^void oregannoAttrFree(struct oregannoAttr **pEl)$/;"	f
oregannoAttrFreeList	hg/lib/oreganno.c	/^void oregannoAttrFreeList(struct oregannoAttr **pList)$/;"	f
oregannoAttrLabel	hg/lib/oregannoUi.c	/^char *oregannoAttrLabel[] = {$/;"	v
oregannoAttrLoad	hg/lib/oreganno.c	/^struct oregannoAttr *oregannoAttrLoad(char **row)$/;"	f
oregannoAttrLoadAll	hg/lib/oreganno.c	/^struct oregannoAttr *oregannoAttrLoadAll(char *fileName) $/;"	f
oregannoAttrLoadAllByChar	hg/lib/oreganno.c	/^struct oregannoAttr *oregannoAttrLoadAllByChar(char *fileName, char chopper) $/;"	f
oregannoAttrLoadAllByTab	hg/inc/oreganno.h	120;"	d
oregannoAttrLoadByQuery	hg/lib/oreganno.c	/^struct oregannoAttr *oregannoAttrLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
oregannoAttrOutput	hg/lib/oreganno.c	/^void oregannoAttrOutput(struct oregannoAttr *el, FILE *f, char sep, char lastSep) $/;"	f
oregannoAttrSaveToDb	hg/lib/oreganno.c	/^void oregannoAttrSaveToDb(struct sqlConnection *conn, struct oregannoAttr *el, char *tableName, int updateSize)$/;"	f
oregannoAttrSaveToDbEscaped	hg/lib/oreganno.c	/^void oregannoAttrSaveToDbEscaped(struct sqlConnection *conn, struct oregannoAttr *el, char *tableName, int updateSize)$/;"	f
oregannoAttrSize	hg/lib/oregannoUi.c	/^int oregannoAttrSize = ArraySize(oregannoAttributes);$/;"	v
oregannoAttrStaticLoad	hg/lib/oreganno.c	/^void oregannoAttrStaticLoad(char **row, struct oregannoAttr *ret)$/;"	f
oregannoAttrTabOut	hg/inc/oreganno.h	164;"	d
oregannoAttributes	hg/lib/oregannoUi.c	/^char *oregannoAttributes[] = {$/;"	v
oregannoCommaIn	hg/lib/oreganno.c	/^struct oreganno *oregannoCommaIn(char **pS, struct oreganno *ret)$/;"	f
oregannoCommaOut	hg/inc/oreganno.h	90;"	d
oregannoFree	hg/lib/oreganno.c	/^void oregannoFree(struct oreganno **pEl)$/;"	f
oregannoFreeList	hg/lib/oreganno.c	/^void oregannoFreeList(struct oreganno **pList)$/;"	f
oregannoLink	hg/inc/oreganno.h	/^struct oregannoLink$/;"	s
oregannoLinkCommaIn	hg/lib/oreganno.c	/^struct oregannoLink *oregannoLinkCommaIn(char **pS, struct oregannoLink *ret)$/;"	f
oregannoLinkCommaOut	hg/inc/oreganno.h	245;"	d
oregannoLinkFree	hg/lib/oreganno.c	/^void oregannoLinkFree(struct oregannoLink **pEl)$/;"	f
oregannoLinkFreeList	hg/lib/oreganno.c	/^void oregannoLinkFreeList(struct oregannoLink **pList)$/;"	f
oregannoLinkLoad	hg/lib/oreganno.c	/^struct oregannoLink *oregannoLinkLoad(char **row)$/;"	f
oregannoLinkLoadAll	hg/lib/oreganno.c	/^struct oregannoLink *oregannoLinkLoadAll(char *fileName) $/;"	f
oregannoLinkLoadAllByChar	hg/lib/oreganno.c	/^struct oregannoLink *oregannoLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
oregannoLinkLoadAllByTab	hg/inc/oreganno.h	198;"	d
oregannoLinkLoadByQuery	hg/lib/oreganno.c	/^struct oregannoLink *oregannoLinkLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
oregannoLinkOutput	hg/lib/oreganno.c	/^void oregannoLinkOutput(struct oregannoLink *el, FILE *f, char sep, char lastSep) $/;"	f
oregannoLinkSaveToDb	hg/lib/oreganno.c	/^void oregannoLinkSaveToDb(struct sqlConnection *conn, struct oregannoLink *el, char *tableName, int updateSize)$/;"	f
oregannoLinkSaveToDbEscaped	hg/lib/oreganno.c	/^void oregannoLinkSaveToDbEscaped(struct sqlConnection *conn, struct oregannoLink *el, char *tableName, int updateSize)$/;"	f
oregannoLinkStaticLoad	hg/lib/oreganno.c	/^void oregannoLinkStaticLoad(char **row, struct oregannoLink *ret)$/;"	f
oregannoLinkTabOut	hg/inc/oreganno.h	242;"	d
oregannoLoad	hg/lib/oreganno.c	/^struct oreganno *oregannoLoad(char **row)$/;"	f
oregannoLoadAll	hg/lib/oreganno.c	/^struct oreganno *oregannoLoadAll(char *fileName) $/;"	f
oregannoLoadAllByChar	hg/lib/oreganno.c	/^struct oreganno *oregannoLoadAllByChar(char *fileName, char chopper) $/;"	f
oregannoLoadAllByTab	hg/inc/oreganno.h	43;"	d
oregannoLoadByQuery	hg/lib/oreganno.c	/^struct oreganno *oregannoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
oregannoOther	hg/inc/oregannoOther.h	/^struct oregannoOther$/;"	s
oregannoOtherAttr	hg/inc/oregannoOther.h	/^struct oregannoOtherAttr$/;"	s
oregannoOtherAttrCommaIn	hg/lib/oregannoOther.c	/^struct oregannoOtherAttr *oregannoOtherAttrCommaIn(char **pS, struct oregannoOtherAttr *ret)$/;"	f
oregannoOtherAttrCommaOut	hg/inc/oregannoOther.h	167;"	d
oregannoOtherAttrFree	hg/lib/oregannoOther.c	/^void oregannoOtherAttrFree(struct oregannoOtherAttr **pEl)$/;"	f
oregannoOtherAttrFreeList	hg/lib/oregannoOther.c	/^void oregannoOtherAttrFreeList(struct oregannoOtherAttr **pList)$/;"	f
oregannoOtherAttrLoad	hg/lib/oregannoOther.c	/^struct oregannoOtherAttr *oregannoOtherAttrLoad(char **row)$/;"	f
oregannoOtherAttrLoadAll	hg/lib/oregannoOther.c	/^struct oregannoOtherAttr *oregannoOtherAttrLoadAll(char *fileName) $/;"	f
oregannoOtherAttrLoadAllByChar	hg/lib/oregannoOther.c	/^struct oregannoOtherAttr *oregannoOtherAttrLoadAllByChar(char *fileName, char chopper) $/;"	f
oregannoOtherAttrLoadAllByTab	hg/inc/oregannoOther.h	120;"	d
oregannoOtherAttrLoadByQuery	hg/lib/oregannoOther.c	/^struct oregannoOtherAttr *oregannoOtherAttrLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
oregannoOtherAttrOutput	hg/lib/oregannoOther.c	/^void oregannoOtherAttrOutput(struct oregannoOtherAttr *el, FILE *f, char sep, char lastSep) $/;"	f
oregannoOtherAttrSaveToDb	hg/lib/oregannoOther.c	/^void oregannoOtherAttrSaveToDb(struct sqlConnection *conn, struct oregannoOtherAttr *el, char *tableName, int updateSize)$/;"	f
oregannoOtherAttrSaveToDbEscaped	hg/lib/oregannoOther.c	/^void oregannoOtherAttrSaveToDbEscaped(struct sqlConnection *conn, struct oregannoOtherAttr *el, char *tableName, int updateSize)$/;"	f
oregannoOtherAttrStaticLoad	hg/lib/oregannoOther.c	/^void oregannoOtherAttrStaticLoad(char **row, struct oregannoOtherAttr *ret)$/;"	f
oregannoOtherAttrTabOut	hg/inc/oregannoOther.h	164;"	d
oregannoOtherCommaIn	hg/lib/oregannoOther.c	/^struct oregannoOther *oregannoOtherCommaIn(char **pS, struct oregannoOther *ret)$/;"	f
oregannoOtherCommaOut	hg/inc/oregannoOther.h	90;"	d
oregannoOtherFree	hg/lib/oregannoOther.c	/^void oregannoOtherFree(struct oregannoOther **pEl)$/;"	f
oregannoOtherFreeList	hg/lib/oregannoOther.c	/^void oregannoOtherFreeList(struct oregannoOther **pList)$/;"	f
oregannoOtherLink	hg/inc/oregannoOther.h	/^struct oregannoOtherLink$/;"	s
oregannoOtherLinkCommaIn	hg/lib/oregannoOther.c	/^struct oregannoOtherLink *oregannoOtherLinkCommaIn(char **pS, struct oregannoOtherLink *ret)$/;"	f
oregannoOtherLinkCommaOut	hg/inc/oregannoOther.h	245;"	d
oregannoOtherLinkFree	hg/lib/oregannoOther.c	/^void oregannoOtherLinkFree(struct oregannoOtherLink **pEl)$/;"	f
oregannoOtherLinkFreeList	hg/lib/oregannoOther.c	/^void oregannoOtherLinkFreeList(struct oregannoOtherLink **pList)$/;"	f
oregannoOtherLinkLoad	hg/lib/oregannoOther.c	/^struct oregannoOtherLink *oregannoOtherLinkLoad(char **row)$/;"	f
oregannoOtherLinkLoadAll	hg/lib/oregannoOther.c	/^struct oregannoOtherLink *oregannoOtherLinkLoadAll(char *fileName) $/;"	f
oregannoOtherLinkLoadAllByChar	hg/lib/oregannoOther.c	/^struct oregannoOtherLink *oregannoOtherLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
oregannoOtherLinkLoadAllByTab	hg/inc/oregannoOther.h	198;"	d
oregannoOtherLinkLoadByQuery	hg/lib/oregannoOther.c	/^struct oregannoOtherLink *oregannoOtherLinkLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
oregannoOtherLinkOutput	hg/lib/oregannoOther.c	/^void oregannoOtherLinkOutput(struct oregannoOtherLink *el, FILE *f, char sep, char lastSep) $/;"	f
oregannoOtherLinkSaveToDb	hg/lib/oregannoOther.c	/^void oregannoOtherLinkSaveToDb(struct sqlConnection *conn, struct oregannoOtherLink *el, char *tableName, int updateSize)$/;"	f
oregannoOtherLinkSaveToDbEscaped	hg/lib/oregannoOther.c	/^void oregannoOtherLinkSaveToDbEscaped(struct sqlConnection *conn, struct oregannoOtherLink *el, char *tableName, int updateSize)$/;"	f
oregannoOtherLinkStaticLoad	hg/lib/oregannoOther.c	/^void oregannoOtherLinkStaticLoad(char **row, struct oregannoOtherLink *ret)$/;"	f
oregannoOtherLinkTabOut	hg/inc/oregannoOther.h	242;"	d
oregannoOtherLoad	hg/lib/oregannoOther.c	/^struct oregannoOther *oregannoOtherLoad(char **row)$/;"	f
oregannoOtherLoadAll	hg/lib/oregannoOther.c	/^struct oregannoOther *oregannoOtherLoadAll(char *fileName) $/;"	f
oregannoOtherLoadAllByChar	hg/lib/oregannoOther.c	/^struct oregannoOther *oregannoOtherLoadAllByChar(char *fileName, char chopper) $/;"	f
oregannoOtherLoadAllByTab	hg/inc/oregannoOther.h	43;"	d
oregannoOtherLoadByQuery	hg/lib/oregannoOther.c	/^struct oregannoOther *oregannoOtherLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
oregannoOtherOutput	hg/lib/oregannoOther.c	/^void oregannoOtherOutput(struct oregannoOther *el, FILE *f, char sep, char lastSep) $/;"	f
oregannoOtherSaveToDb	hg/lib/oregannoOther.c	/^void oregannoOtherSaveToDb(struct sqlConnection *conn, struct oregannoOther *el, char *tableName, int updateSize)$/;"	f
oregannoOtherSaveToDbEscaped	hg/lib/oregannoOther.c	/^void oregannoOtherSaveToDbEscaped(struct sqlConnection *conn, struct oregannoOther *el, char *tableName, int updateSize)$/;"	f
oregannoOtherStaticLoad	hg/lib/oregannoOther.c	/^void oregannoOtherStaticLoad(char **row, struct oregannoOther *ret)$/;"	f
oregannoOtherTabOut	hg/inc/oregannoOther.h	87;"	d
oregannoOutput	hg/lib/oreganno.c	/^void oregannoOutput(struct oreganno *el, FILE *f, char sep, char lastSep) $/;"	f
oregannoSaveToDb	hg/lib/oreganno.c	/^void oregannoSaveToDb(struct sqlConnection *conn, struct oreganno *el, char *tableName, int updateSize)$/;"	f
oregannoSaveToDbEscaped	hg/lib/oreganno.c	/^void oregannoSaveToDbEscaped(struct sqlConnection *conn, struct oreganno *el, char *tableName, int updateSize)$/;"	f
oregannoStaticLoad	hg/lib/oreganno.c	/^void oregannoStaticLoad(char **row, struct oreganno *ret)$/;"	f
oregannoTabOut	hg/inc/oreganno.h	87;"	d
oregannoTypeDbValue	hg/lib/oregannoUi.c	/^char *oregannoTypeDbValue[] = {$/;"	v
oregannoTypeLabel	hg/lib/oregannoUi.c	/^char *oregannoTypeLabel[] = {$/;"	v
oregannoTypeSize	hg/lib/oregannoUi.c	/^int oregannoTypeSize = ArraySize(oregannoTypeString);$/;"	v
oregannoTypeString	hg/lib/oregannoUi.c	/^char *oregannoTypeString[] = {$/;"	v
orf	hg/inc/easyGene.h	/^    char *orf;	\/* ORF identifier *\/$/;"	m	struct:easyGene
orfEnd	hg/inc/borf.h	/^    int orfEnd;	\/* Start of orf (not always same as CDS) *\/$/;"	m	struct:borf
orfScore	hg/inc/rikenBest.h	/^    float orfScore;	\/* Score from bestorf - 50 is decent *\/$/;"	m	struct:rikenBest
orfSize	hg/inc/txInfo.h	/^    int orfSize;	\/* Size of ORF *\/$/;"	m	struct:txInfo
orfStart	hg/inc/borf.h	/^    int orfStart;	\/* Start of orf (not always same as CDS) *\/$/;"	m	struct:borf
orfStop	hg/inc/geneCheck.h	/^    unsigned orfStop;	\/* number of in-frame stop codons *\/$/;"	m	struct:geneCheck
orfStrand	hg/inc/rikenBest.h	/^    char orfStrand[2];	\/* Strand bestorf is on: +, - or . *\/$/;"	m	struct:rikenBest
orgCgiName	hg/lib/web.c	/^static char *orgCgiName = "org";$/;"	v	file:
organ	hg/inc/sageExp.h	/^    char *organ;	\/* organ identifier. *\/$/;"	m	struct:sageExp
organis	hg/inc/stsInfoMouseNew.h	/^    char *organis;	\/* Organism for which STS discovered *\/$/;"	m	struct:stsInfoMouseNew
organis	hg/inc/stsInfoRat.h	/^    char *organis;	\/* Organism for which STS discovered *\/$/;"	m	struct:stsInfoRat
organism	hg/inc/dbDb.h	/^    char *organism;	\/* Common name of organism - first letter capitalized *\/$/;"	m	struct:dbDb
organism	hg/inc/imageClone.h	/^    char *organism;	\/* Species *\/$/;"	m	struct:imageClone
organism	hg/inc/sageExp.h	/^    char *organism;	\/* organism source of cells. *\/$/;"	m	struct:sageExp
organism	hg/inc/stsInfo.h	/^    char *organism;	\/* Organism for which STS discovered *\/$/;"	m	struct:stsInfo
organism	hg/inc/stsInfo2.h	/^    char *organism;	\/* Organism for which STS discovered *\/$/;"	m	struct:stsInfo2
organism	hg/inc/taxonXref.h	/^    char *organism;	\/* UCSC organism name *\/$/;"	m	struct:taxonXref
orgn	hg/inc/alignInfo.h	/^    char *orgn;	\/* aligned organism *\/$/;"	m	struct:alignInfo
orientation	hg/inc/ggDbRep.h	/^    signed char orientation;	\/* +1 or -1 relative to start bac *\/$/;"	m	struct:altGraph
orientation	hg/inc/ggMrnaAli.h	/^    short orientation;	\/* 1 or -1 orientation query appears to be in given biological evidence (i.e. splice site)  0 indicates no evidence. This could disagree with strand if est submitted rc'd for example  *\/$/;"	m	struct:ggMrnaAli
orientation	hg/inc/hgGene.h	/^    signed char orientation;	\/* Orientation relative to start bac *\/$/;"	m	struct:hgGene
orientation	hg/inc/hgGene.h	/^    signed char orientation;	\/* Orientation relative to start bac *\/$/;"	m	struct:hgTranscript
orientation	inc/cda.h	/^    int orientation;                \/* +1 or -1 depending on whether *clone* is + or - WRT chrom . *\/$/;"	m	struct:cdaAli
orientation	inc/ens.h	/^    int orientation;                    \/* +1 or -1. Strand relative to contig. *\/$/;"	m	struct:ensExon
orientation	inc/ens.h	/^    int orientation;               \/* +1 or -1.  Strand relative to contig. *\/$/;"	m	struct:ensFeature
orientation	inc/hgGene.h	/^    signed char orientation;	\/* Orientation relative to start bac *\/$/;"	m	struct:hgGene
orientation	inc/hgGene.h	/^    signed char orientation;	\/* Orientation relative to start bac *\/$/;"	m	struct:hgTranscript
orientation	inc/hgap.h	/^    int orientation;            \/* +1 or -1 relative to parent. *\/$/;"	m	struct:hgNest
orientation	inc/maDbRep.h	/^    signed char orientation;	\/* Orientation relative to first BAC *\/$/;"	m	struct:mrnaAli
orientation	inc/unfin.h	/^    int orientation;   \/* +1 or -1. Strand relative to parent.*\/$/;"	m	struct:contigTree
orientation	inc/wormdna.h	/^    char orientation;           \/* + or - (relative to gene transcription direction) *\/$/;"	m	struct:wormCdnaInfo
orig	hg/inc/dv.h	/^    char *orig;	\/* Original *\/$/;"	m	struct:dv
origName	hg/inc/softPromoter.h	/^    char *origName;	\/* Name in original file *\/$/;"	m	struct:softPromoter
origScore	hg/inc/softPromoter.h	/^    float origScore;	\/* Score in original file, not scaled *\/$/;"	m	struct:softPromoter
originalGapCosts	lib/gapCalc.c	/^static char *originalGapCosts = $/;"	v	file:
originalId	hg/inc/dbRIP.h	/^    char *originalId;	\/* original ID *\/$/;"	m	struct:dbRIP
ortho1Chrom	hg/inc/orthoAlleles.h	/^    char *ortho1Chrom;	\/* Chromosome of orthologous species 1 *\/$/;"	m	struct:orthoAlleles
ortho1ChromEnd	hg/inc/orthoAlleles.h	/^    unsigned ortho1ChromEnd;	\/* End position in species 1 *\/$/;"	m	struct:orthoAlleles
ortho1ChromStart	hg/inc/orthoAlleles.h	/^    unsigned ortho1ChromStart;	\/* Start position in species 1 *\/$/;"	m	struct:orthoAlleles
ortho1State	hg/inc/orthoAlleles.h	/^    char *ortho1State;	\/* A, C, G, T, a, c, g, t, or . *\/$/;"	m	struct:orthoAlleles
ortho1Strand	hg/inc/orthoAlleles.h	/^    char ortho1Strand;	\/* + or - or . *\/$/;"	m	struct:orthoAlleles
ortho2Chrom	hg/inc/orthoAlleles.h	/^    char *ortho2Chrom;	\/* Chromosome of orthologous species 2 *\/$/;"	m	struct:orthoAlleles
ortho2ChromEnd	hg/inc/orthoAlleles.h	/^    unsigned ortho2ChromEnd;	\/* End position in species 2 *\/$/;"	m	struct:orthoAlleles
ortho2ChromStart	hg/inc/orthoAlleles.h	/^    unsigned ortho2ChromStart;	\/* Start position in species 2 *\/$/;"	m	struct:orthoAlleles
ortho2State	hg/inc/orthoAlleles.h	/^    char *ortho2State;	\/* A, C, G, T, a, c, g, t, or . *\/$/;"	m	struct:orthoAlleles
ortho2Strand	hg/inc/orthoAlleles.h	/^    char ortho2Strand;	\/* + or - or . *\/$/;"	m	struct:orthoAlleles
orthoAllele	hg/inc/hapmapAllelesOrtho.h	/^    char orthoAllele[2];	\/* Allele in other org *\/$/;"	m	struct:hapmapAllelesOrtho
orthoAlleles	hg/inc/hapmapPhaseIIISummary.h	/^    char *orthoAlleles;	\/* Orthologous allele for each species (or N if not found) *\/$/;"	m	struct:hapmapPhaseIIISummary
orthoAlleles	hg/inc/orthoAlleles.h	/^struct orthoAlleles$/;"	s
orthoAllelesCommaIn	hg/lib/orthoAlleles.c	/^struct orthoAlleles *orthoAllelesCommaIn(char **pS, struct orthoAlleles *ret)$/;"	f
orthoAllelesCommaOut	hg/inc/orthoAlleles.h	76;"	d
orthoAllelesFree	hg/lib/orthoAlleles.c	/^void orthoAllelesFree(struct orthoAlleles **pEl)$/;"	f
orthoAllelesFreeList	hg/lib/orthoAlleles.c	/^void orthoAllelesFreeList(struct orthoAlleles **pList)$/;"	f
orthoAllelesLoad	hg/lib/orthoAlleles.c	/^struct orthoAlleles *orthoAllelesLoad(char **row)$/;"	f
orthoAllelesLoadAll	hg/lib/orthoAlleles.c	/^struct orthoAlleles *orthoAllelesLoadAll(char *fileName) $/;"	f
orthoAllelesLoadAllByChar	hg/lib/orthoAlleles.c	/^struct orthoAlleles *orthoAllelesLoadAllByChar(char *fileName, char chopper) $/;"	f
orthoAllelesLoadAllByTab	hg/inc/orthoAlleles.h	54;"	d
orthoAllelesOutput	hg/lib/orthoAlleles.c	/^void orthoAllelesOutput(struct orthoAlleles *el, FILE *f, char sep, char lastSep) $/;"	f
orthoAllelesStaticLoad	hg/lib/orthoAlleles.c	/^void orthoAllelesStaticLoad(char **row, struct orthoAlleles *ret)$/;"	f
orthoAllelesTabOut	hg/inc/orthoAlleles.h	73;"	d
orthoChrom	hg/inc/hapmapAllelesOrtho.h	/^    char *orthoChrom;	\/* Chromosome in other org *\/$/;"	m	struct:hapmapAllelesOrtho
orthoCount	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned orthoCount;	\/* Species for which orthologous alleles have been determined *\/$/;"	m	struct:hapmapPhaseIIISummary
orthoEnd	hg/inc/hapmapAllelesOrtho.h	/^    unsigned orthoEnd;	\/* End position in other org *\/$/;"	m	struct:hapmapAllelesOrtho
orthoEnd	hg/inc/txEdgeOrtho.h	/^    int orthoEnd;	\/* End of orthologous edge (based on RNA in other species) *\/$/;"	m	struct:txEdgeOrtho
orthoEndType	hg/inc/txEdgeOrtho.h	/^    char orthoEndType[2];	\/* Is orthologous end hard\/soft? *\/$/;"	m	struct:txEdgeOrtho
orthoQuals	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned short *orthoQuals;	\/* Base quality score (0-100) for each species *\/$/;"	m	struct:hapmapPhaseIIISummary
orthoSize	hg/inc/cdsOrtho.h	/^    int orthoSize;	\/* Size of orf in other species *\/$/;"	m	struct:cdsOrtho
orthoStart	hg/inc/hapmapAllelesOrtho.h	/^    unsigned orthoStart;	\/* Start position in other org *\/$/;"	m	struct:hapmapAllelesOrtho
orthoStart	hg/inc/txEdgeOrtho.h	/^    int orthoStart;	\/* Start of orthologous edge (based on RNA in other species) *\/$/;"	m	struct:txEdgeOrtho
orthoStartType	hg/inc/txEdgeOrtho.h	/^    char orthoStartType[2];	\/* Is orthologous start hard\/soft? *\/$/;"	m	struct:txEdgeOrtho
orthoStrand	hg/inc/hapmapAllelesOrtho.h	/^    char orthoStrand[2];	\/* Strand in other org *\/$/;"	m	struct:hapmapAllelesOrtho
orthoStrand	hg/inc/txEdgeOrtho.h	/^    char orthoStrand[2];	\/* Strand of orthologous txGraph *\/$/;"	m	struct:txEdgeOrtho
ortholog	hg/inc/lowelabTIGROperonScore.h	/^    int ortholog;	\/* number of orthologous genes *\/$/;"	m	struct:lowelabTIGROperonScore
ortholog_link	hg/inc/lowelabTIGROperonScore.h	/^    char *ortholog_link;	\/* url on operondb *\/$/;"	m	struct:lowelabTIGROperonScore
orthologs	hg/inc/snoRNAs.h	/^    char *orthologs;	\/* Possible gene orthologs in closely-related species *\/$/;"	m	struct:snoRNAs
orthologs	hg/lib/snoRNAs.h	/^    char *orthologs;	\/* Possible gene orthologs in closely-related species *\/$/;"	m	struct:snoRNAs
osLinux	inc/cheapcgi.h	/^    osLinux=2,   \/\/ Workhorse$/;"	e	enum:osType
osMac	inc/cheapcgi.h	/^    osMac=3,     \/\/ ashion or Religion$/;"	e	enum:osType
osOther	inc/cheapcgi.h	/^    osOther=4    \/\/ Anything else$/;"	e	enum:osType
osType	inc/cheapcgi.h	/^enum osType$/;"	g
osUnknown	inc/cheapcgi.h	/^    osUnknown=0, \/\/ Not yet known$/;"	e	enum:osType
osWindows	inc/cheapcgi.h	/^    osWindows=1, \/\/ The evil empire$/;"	e	enum:osType
otFile	hg/inc/metaTbl.h	/^    otFile   =2   \/\/ Files are also supported and used by ENCODE download only datasets.$/;"	e	enum:metaObjType
otTable	hg/inc/metaTbl.h	/^    otTable  =1,  \/\/ Table is default$/;"	e	enum:metaObjType
otUnknown	hg/inc/metaTbl.h	/^    otUnknown=0,  \/\/ Unknown type$/;"	e	enum:metaObjType
otherAcc	hg/inc/mapSts.h	/^    char *otherAcc;	\/* Accession number of other contigs that the marker hits *\/$/;"	m	struct:mapSts
otherAcc	hg/inc/stsMap.h	/^    char *otherAcc;	\/* Accession number of other contigs that the marker hits *\/$/;"	m	struct:stsMap
otherAcc	hg/inc/stsMapMouseNew.h	/^    char *otherAcc;	\/* Accession number of other contigs that the marker hits *\/$/;"	m	struct:stsMapMouseNew
otherAcc	hg/inc/stsMapRat.h	/^    char *otherAcc;	\/* Accession number of other contigs that the marker hits *\/$/;"	m	struct:stsMapRat
otherAcc	hg/inc/stsMarker.h	/^    char *otherAcc;	\/* Accession number of other contigs that the marker hits *\/$/;"	m	struct:stsMarker
otherAllele	hg/inc/hapmapAlleleFreq.h	/^    char otherAllele[2];	\/* Variant allele *\/$/;"	m	struct:hapmapAlleleFreq
otherAllele	hg/inc/hapmapPrimateAlleles.h	/^    char otherAllele;	\/* A, C, G, or T *\/$/;"	m	struct:hapmapPrimateAlleles
otherAlleleFreq	hg/inc/hapmapAlleleFreq.h	/^    float otherAlleleFreq;	\/* Variant allele frequency (between 0.0 and 1.0) *\/$/;"	m	struct:hapmapAlleleFreq
otherChrom	hg/inc/genomicDups.h	/^    char *otherChrom;	\/* Human chromosome *\/$/;"	m	struct:genomicDups
otherChrom	hg/inc/genomicSuperDups.h	/^    char *otherChrom;	\/* Other Human chromosome or FPC contig *\/$/;"	m	struct:genomicSuperDups
otherDbSTS	hg/inc/stsInfo.h	/^    unsigned *otherDbSTS;	\/* Related dbSTS IDs *\/$/;"	m	struct:stsInfo
otherDbSTS	hg/inc/stsInfo2.h	/^    unsigned *otherDbSTS;	\/* Related dbSTS IDs *\/$/;"	m	struct:stsInfo2
otherDbstsCount	hg/inc/stsInfo.h	/^    unsigned otherDbstsCount;	\/* Number of related dbSTS IDs *\/$/;"	m	struct:stsInfo
otherDbstsCount	hg/inc/stsInfo2.h	/^    unsigned otherDbstsCount;	\/* Number of related dbSTS IDs *\/$/;"	m	struct:stsInfo2
otherEnd	hg/inc/genomicDups.h	/^    unsigned otherEnd;	\/* End in other sequence *\/$/;"	m	struct:genomicDups
otherEnd	hg/inc/genomicSuperDups.h	/^    unsigned otherEnd;	\/* End in other  sequence *\/$/;"	m	struct:genomicSuperDups
otherEnd	hg/inc/roughAli.h	/^    unsigned otherEnd;	\/* End in other sequence *\/$/;"	m	struct:roughAli
otherId	hg/inc/ensInfo.h	/^    char *otherId;	\/* other ID *\/$/;"	m	struct:ensInfo
otherNames	hg/inc/stsInfo.h	/^    char **otherNames;	\/* Alias names *\/$/;"	m	struct:stsInfo
otherNames	hg/inc/stsInfo2.h	/^    char **otherNames;	\/* Alias names *\/$/;"	m	struct:stsInfo2
otherSize	hg/inc/genomicSuperDups.h	/^    unsigned otherSize;	\/* Total size of other sequence *\/$/;"	m	struct:genomicSuperDups
otherStart	hg/inc/genomicDups.h	/^    unsigned otherStart;	\/* Start in other sequence *\/$/;"	m	struct:genomicDups
otherStart	hg/inc/genomicSuperDups.h	/^    unsigned otherStart;	\/* Start in other  sequence *\/$/;"	m	struct:genomicSuperDups
otherStart	hg/inc/roughAli.h	/^    unsigned otherStart;	\/* Start in other sequence *\/$/;"	m	struct:roughAli
otherStrand	hg/lib/liftOver.c	/^static char otherStrand(char c)$/;"	f	file:
otherUCSC	hg/inc/stsInfo.h	/^    unsigned *otherUCSC;	\/* Related active UCSC ids *\/$/;"	m	struct:stsInfo
otherUCSC	hg/inc/stsInfo2.h	/^    unsigned *otherUCSC;	\/* Related active UCSC ids *\/$/;"	m	struct:stsInfo2
otherUCSCcount	hg/inc/stsInfo.h	/^    unsigned otherUCSCcount;	\/* Number of related active UCSC ids *\/$/;"	m	struct:stsInfo
otherUCSCcount	hg/inc/stsInfo2.h	/^    unsigned otherUCSCcount;	\/* Number of related active UCSC ids *\/$/;"	m	struct:stsInfo2
ottGeneId	hg/inc/gencodeGeneClass.h	/^    char *ottGeneId;	\/* Otter Gene id for Gencode gene *\/$/;"	m	struct:gencodeGeneClass
ottTranscriptId	hg/inc/gencodeGeneClass.h	/^    char *ottTranscriptId;	\/* Otter Transcript id for Gencode gene *\/$/;"	m	struct:gencodeGeneClass
otterId	hg/inc/vegaInfo.h	/^    char *otterId;	\/* otter (Ensembl db) transcript ID *\/$/;"	m	struct:vegaInfo
ourErrAbort	lib/snofmake.c	/^static void ourErrAbort()$/;"	f	file:
out	inc/genoFind.h	/^    void (*out)(char *chromName, int chromSize, int chromOffset,$/;"	m	struct:gfOutput
out	inc/seqOut.h	/^    FILE *out;          \/* File to write to. *\/$/;"	m	struct:cfm
out	inc/seqOut.h	/^    FILE *out;$/;"	m	struct:baf
out	inc/subText.h	/^    char *out;			\/* dest side of substitution *\/$/;"	m	struct:subText
out	lib/dgRange.c	/^   struct bfVertex *out;   \/* Connecting node. *\/$/;"	m	struct:bfEdge	typeref:struct:bfEdge::bfVertex	file:
outFormat	inc/asParse.h	/^    char *outFormat;		   \/* Output format for printf. %d, %u, etc. *\/$/;"	m	struct:asTypeInfo
outFunction	jkOwnLib/gfPcrLib.c	/^typedef void (*outFunction)(struct gfPcrOutput *out, FILE *f, char *url) ;$/;"	t	file:
outMafTableDrop	hg/lib/pal.c	/^static char * outMafTableDrop(struct cart *cart, struct sqlConnection *conn)$/;"	f	file:
outSize	inc/subText.h	/^    int outSize;		\/* length of out string *\/$/;"	m	struct:subText
outSpeciesExons	hg/lib/mafGene.c	/^static void outSpeciesExons(FILE *f, char *dbName, struct speciesInfo *si, $/;"	f	file:
outSpeciesExonsNoTrans	hg/lib/mafGene.c	/^static void outSpeciesExonsNoTrans(FILE *f, char *dbName, $/;"	f	file:
outputBed	jkOwnLib/gfPcrLib.c	/^static void outputBed(struct gfPcrOutput *out, FILE *f, char *url)$/;"	f	file:
outputBed12	jkOwnLib/gfPcrLib.c	/^static void outputBed12(struct gfPcrOutput *out, FILE *f, char *url)$/;"	f	file:
outputFa	jkOwnLib/gfPcrLib.c	/^static void outputFa(struct gfPcrOutput *out, FILE *f, char *url)$/;"	f	file:
outputIdentification	hg/lib/wigDataStream.c	/^static void outputIdentification(struct wiggleDataStream *wds, FILE *fh)$/;"	f	file:
outputPsl	jkOwnLib/gfPcrLib.c	/^static void outputPsl(struct gfPcrOutput *out, FILE *f, char *url)$/;"	f	file:
outputTranscript	hg/lib/geneGraph.c	/^static void outputTranscript()$/;"	f	file:
output_row	hg/lib/wigAsciiToBinary.c	/^static void output_row()$/;"	f	file:
overEnd	hg/inc/pseudoGeneLink.h	/^    int overEnd;	\/* overlapping mrna end position *\/$/;"	m	struct:pseudoGeneLink
overExonCover	hg/inc/retroMrnaInfo.h	/^    int overExonCover;	\/* count of overlapping mrna exons col52 *\/$/;"	m	struct:retroMrnaInfo
overExonCover	hg/inc/ucscRetroInfo.h	/^    int overExonCover;	\/* count of overlapping mrna exons col50 *\/$/;"	m	struct:ucscRetroInfo
overName	hg/inc/pseudoGeneLink.h	/^    char *overName;	\/* name of overlapping mrna *\/$/;"	m	struct:pseudoGeneLink
overName	hg/inc/retroMrnaInfo.h	/^    char *overName;	\/* name of overlapping mrna col50 *\/$/;"	m	struct:retroMrnaInfo
overName	hg/inc/ucscRetroInfo.h	/^    char *overName;	\/* name of overlapping mrna col48 *\/$/;"	m	struct:ucscRetroInfo
overStart	hg/inc/pseudoGeneLink.h	/^    int overStart;	\/* overlapping mrna start position *\/$/;"	m	struct:pseudoGeneLink
overStart	hg/inc/retroMrnaInfo.h	/^    int overStart;	\/* overlapping mrna start position col51 *\/$/;"	m	struct:retroMrnaInfo
overStart	hg/inc/ucscRetroInfo.h	/^    int overStart;	\/* overlapping mrna start position col49 *\/$/;"	m	struct:ucscRetroInfo
overStrand	hg/inc/pseudoGeneLink.h	/^    char overStrand[3];	\/* strand of overlapping mrna *\/$/;"	m	struct:pseudoGeneLink
overStrand	hg/inc/retroMrnaInfo.h	/^    char overStrand[3];	\/* strand of overlapping mrna col53 *\/$/;"	m	struct:retroMrnaInfo
overStrand	hg/inc/ucscRetroInfo.h	/^    char overStrand[3];	\/* strand of overlapping mrna col51 *\/$/;"	m	struct:ucscRetroInfo
overallLowerLimit	hg/lib/wigAsciiToBinary.c	/^static double overallLowerLimit = wigEncodeStartingLowerLimit;$/;"	v	file:
overallMajorAllele	hg/inc/hapmapPhaseIIISummary.h	/^    char overallMajorAllele;	\/* This allele has been observed in at least half of the populations that have data for this SNP *\/$/;"	m	struct:hapmapPhaseIIISummary
overallMinorAllele	hg/inc/hapmapPhaseIIISummary.h	/^    char overallMinorAllele;	\/* This allele may not have been observed in any HapMap sample *\/$/;"	m	struct:hapmapPhaseIIISummary
overallUpperLimit	hg/lib/wigAsciiToBinary.c	/^static double overallUpperLimit = wigEncodeStartingUpperLimit;$/;"	v	file:
overhang	hg/inc/cutter.h	/^    int overhang;	\/* Overhang size and direction *\/$/;"	m	struct:cutter
overlap	hg/inc/ucscRetroOrtho.h	/^    int overlap;	\/* percent of retro that breaks net relative to other species *\/$/;"	m	struct:ucscRetroOrtho
overlap	jkOwnLib/supStitch.c	/^    int overlap;                 \/* Overlap between two nodes. *\/$/;"	m	struct:ssEdge	file:
overlapDog	hg/inc/pseudoGeneLink.h	/^    int overlapDog;	\/* percent of retro that breaks net relative to dog *\/$/;"	m	struct:pseudoGeneLink
overlapDog	hg/inc/retroMrnaInfo.h	/^    int overlapDog;	\/* percent of retro that breaks net relative to dog col54 *\/$/;"	m	struct:retroMrnaInfo
overlapEnd	lib/rangeTree.c	/^static int overlapStart, overlapEnd;$/;"	v	file:
overlapMouse	hg/inc/pseudoGeneLink.h	/^    int overlapMouse;	\/* percent of retro that breaks net relative to Mouse *\/$/;"	m	struct:pseudoGeneLink
overlapMouse	hg/inc/retroMrnaInfo.h	/^    int overlapMouse;	\/* percent of retro that breaks net relative to Mouse col32 *\/$/;"	m	struct:retroMrnaInfo
overlapRhesus	hg/inc/pseudoGeneLink.h	/^    int overlapRhesus;	\/* percent of retro that breaks net relative to Rhesus *\/$/;"	m	struct:pseudoGeneLink
overlapRhesus	hg/inc/retroMrnaInfo.h	/^    int overlapRhesus;	\/* percent of retro that breaks net relative to Rhesus col31 *\/$/;"	m	struct:retroMrnaInfo
overlapScore	hg/inc/txEdgeOrtho.h	/^    int overlapScore;	\/* Parts per thousand of mapped\/ortho overlap *\/$/;"	m	struct:txEdgeOrtho
overlapStart	lib/rangeTree.c	/^static int overlapStart, overlapEnd;$/;"	v	file:
overlappingMRnas	hg/lib/ggGraph.c	/^boolean overlappingMRnas(struct geneGraph *gg, struct hash *aliHash, $/;"	f
overrideField	hg/lib/trackDbCustom.c	/^static void overrideField(struct trackDb *td, struct trackDb *overTd,$/;"	f	file:
overrides	hg/inc/trackDb.h	/^    struct hash *overrides;     \/* If not NULL, this is an override$/;"	m	struct:trackDb	typeref:struct:trackDb::hash
owner	hg/inc/variome.h	/^    char *owner;	\/* creator of item *\/$/;"	m	struct:variome
owner	hg/inc/wikiTrack.h	/^    char *owner;	\/* creator of item *\/$/;"	m	struct:wikiTrack
p3	hg/inc/ggPrivate.h	/^    struct ggMrnaAli *p5, *p3;	\/* Start\/end of pair. *\/$/;"	m	struct:clonePair	typeref:struct:clonePair::
p5	hg/inc/ggPrivate.h	/^    struct ggMrnaAli *p5, *p3;	\/* Start\/end of pair. *\/$/;"	m	struct:clonePair	typeref:struct:clonePair::ggMrnaAli
pCR	hg/inc/ispyTables.h	/^    char *pCR;	\/* pathological complete response *\/$/;"	m	struct:onStudy
pConsSub	hg/inc/dless.h	/^    float pConsSub;	\/* P-value of conservation in subtree beneath event *\/$/;"	m	struct:dless
pConsSubCond	hg/inc/dless.h	/^    float pConsSubCond;	\/* Conditional P-value of conservation in subtree given total *\/$/;"	m	struct:dless
pConsSup	hg/inc/dless.h	/^    float pConsSup;	\/* P-value of conservation in rest of tree *\/$/;"	m	struct:dless
pConsSupCond	hg/inc/dless.h	/^    float pConsSupCond;	\/* Conditional P-value of conservation in rest of tree given total *\/$/;"	m	struct:dless
pDir	inc/wormdna.h	/^    char **pDir;$/;"	m	struct:wormGdfCache
pGC	hg/inc/dnaProbe.h	/^    float pGC;	\/* percentage of bases that are g's and c's *\/$/;"	m	struct:dnaProbe
pNext	hg/inc/samAlignment.h	/^    int pNext;	\/* Position (1-based) of next (mate) sequence. May be -1 or 0 if no mate *\/$/;"	m	struct:samAlignment
pTree	lib/phyloTree.c	/^static void pTree( struct phyloTree *tree,FILE *f, boolean noDups)$/;"	f	file:
pValue	hg/inc/bed5Pval.h	/^    float pValue;	\/* -log10 P-value *\/$/;"	m	struct:bed5Pval
pValue	hg/inc/gwasCatalog.h	/^    char *pValue;	\/* p-Value *\/$/;"	m	struct:gwasCatalog
pValueDesc	hg/inc/gwasCatalog.h	/^    char *pValueDesc;	\/* p-Value Description *\/$/;"	m	struct:gwasCatalog
pValues	inc/histogram.h	/^    float *pValues;		\/*	array pValues[binCount]		*\/$/;"	m	struct:histoResult
packDna16	lib/dnautil.c	/^bits32 packDna16(DNA *in)$/;"	f
packDna4	lib/dnautil.c	/^UBYTE packDna4(DNA *in)$/;"	f
packDna8	lib/dnautil.c	/^bits16 packDna8(DNA *in)$/;"	f
packableType	hg/lib/trackDbCustom.c	/^static boolean packableType(char *type)$/;"	f	file:
packedSize	lib/twoBit.c	/^static int packedSize(int unpackedSize)$/;"	f	file:
packetSeen	inc/rudp.h	/^struct packetSeen$/;"	s
padOutAli	hg/lib/mafGene.c	/^static struct mafAli *padOutAli(struct mafAli *list, char *database, $/;"	f	file:
pairUpItems	lib/hacTree.c	/^static struct hacTree *pairUpItems(const struct slList *itemList, int itemCount,$/;"	f	file:
pairedTagAlign	hg/inc/pairedTagAlign.h	/^struct pairedTagAlign$/;"	s
pairedTagAlignCommaOut	hg/inc/pairedTagAlign.h	62;"	d
pairedTagAlignLoadAllByTab	hg/inc/pairedTagAlign.h	40;"	d
pairedTagAlignTabOut	hg/inc/pairedTagAlign.h	59;"	d
palOptions	hg/lib/pal.c	/^void palOptions(struct cart *cart,$/;"	f
palOutPredList	hg/lib/pal.c	/^int palOutPredList(struct sqlConnection *conn, struct cart *cart,$/;"	f
palOutPredsInBeds	hg/lib/pal.c	/^int palOutPredsInBeds(struct sqlConnection *conn, struct cart *cart,$/;"	f
palindromic	hg/inc/cutter.h	/^    unsigned char palindromic;	\/* 1 if it's panlidromic, 0 if not. *\/$/;"	m	struct:cutter
panelLSID	hg/inc/alleleFreqs.h	/^    char *panelLSID;	\/* panelLSID *\/$/;"	m	struct:alleleFreqs
panelLSID	hg/inc/genotype.h	/^    char *panelLSID;	\/*  panelLSID	# urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 *\/$/;"	m	struct:genotype
panelLSID	hg/inc/genotypeFreqs.h	/^    char *panelLSID;	\/* panelLSID *\/$/;"	m	struct:genotypeFreqs
parallelConn	lib/net.c	/^struct parallelConn$/;"	s	file:
parallelFetch	lib/net.c	/^boolean parallelFetch(char *url, char *outPath, int numConnections, int numRetries, boolean newer, boolean progress)$/;"	f
paranoidCheckSize	hg/lib/annoStreamWig.c	/^static void paranoidCheckSize(struct wiggle *wiggle)$/;"	f	file:
parenNeg	hg/lib/rmskOut.c	/^static void parenNeg(int num, char *s, size_t sSize)$/;"	f	file:
parent	hg/inc/joiner.h	/^    struct joinerSet *parent;		\/* Parsed-out parent type if any. *\/$/;"	m	struct:joinerSet	typeref:struct:joinerSet::joinerSet
parent	hg/inc/taxonNode.h	/^    unsigned parent;	\/* parent node id in GenBank taxonomy database *\/$/;"	m	struct:taxonNode
parent	hg/inc/trackDb.h	/^    struct trackDb *parent;     \/* parent of composite or superTracks *\/$/;"	m	struct:trackDb	typeref:struct:trackDb::trackDb
parent	inc/hacTree.h	/^    struct hacTree *parent;     \/\/ Cluster that contains this cluster, NULL for root node$/;"	m	struct:hacTree	typeref:struct:hacTree::hacTree
parent	inc/hgap.h	/^    struct hgNest *parent;      \/* Parent if any. *\/$/;"	m	struct:hgNest	typeref:struct:hgNest::hgNest
parent	inc/phyloTree.h	/^    struct phyloTree *parent;		\/* the parent of this node *\/$/;"	m	struct:phyloTree	typeref:struct:phyloTree::phyloTree
parent	inc/unfin.h	/^    struct contigTree *parent;   \/* Parent of contig. *\/$/;"	m	struct:contigTree	typeref:struct:contigTree::contigTree
parent	lib/cirTree.c	/^    struct rTree *parent;	\/* Our parent if any. *\/$/;"	m	struct:rTree	typeref:struct:rTree::rTree	file:
parent	lib/memalloc.c	/^    struct memHandler *parent;   \/* Underlying memory handler. *\/$/;"	m	struct:memTracker	typeref:struct:memTracker::memHandler	file:
parentIds	inc/gff3.h	/^    struct slName *parentIds; \/* Indicates the parent of the feature.  A parent$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::slName
parentName	hg/inc/trackDb.h	/^    char *parentName;           \/* set if this is a supertrack member *\/$/;"	m	struct:trackDb
parentName	hg/lib/trackDbCustom.c	/^    char *parentName;$/;"	m	struct:superTrackInfo	file:
parentSpliceCount	hg/inc/retroMrnaInfo.h	/^    unsigned parentSpliceCount;	\/* # of splice sites in parent gene col20 *\/$/;"	m	struct:retroMrnaInfo
parentSpliceCount	hg/inc/ucscRetroInfo.h	/^    unsigned parentSpliceCount;	\/* # of splice sites in parent gene col20 *\/$/;"	m	struct:ucscRetroInfo
parents	inc/gff3.h	/^    struct gff3AnnRef *parents; \/* Parent objects for parentIds *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3AnnRef
parseAliasAttr	lib/gff3.c	/^static void parseAliasAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseAnOption	lib/options.c	/^static boolean parseAnOption(struct hash *hash, char *arg, struct optionSpec *optionSpecs)$/;"	f	file:
parseAndExp	lib/keys.c	/^static struct exp *parseAndExp()$/;"	f	file:
parseAnn	lib/gff3.c	/^static void parseAnn(struct gff3File *g3f, char *line)$/;"	f	file:
parseAssignment	hg/lib/hui.c	/^static boolean parseAssignment(char *words, char **name, char **value)$/;"	f	file:
parseAttr	lib/gff3.c	/^static void parseAttr(struct gff3Ann *g3a, char *attrStr)$/;"	f	file:
parseAttrVals	lib/gff3.c	/^static struct slName *parseAttrVals(struct gff3Ann *g3a, char *tag, char *valsStr)$/;"	f	file:
parseAttribute	lib/dtdParse.c	/^static void parseAttribute(char *line, char *textField,$/;"	f	file:
parseAttributeOntology	lib/gff3.c	/^static void parseAttributeOntology(struct gff3File *g3f, char *line)$/;"	f	file:
parseAttrs	lib/gff3.c	/^static void parseAttrs(struct gff3Ann *g3a, char *attrsCol)$/;"	f	file:
parseBedGraphSection	lib/bwgCreate.c	/^static void parseBedGraphSection(struct lineFile *lf, boolean clipDontDie, $/;"	f	file:
parseBlockLine	lib/blastParse.c	/^static boolean parseBlockLine(struct blastFile *bf, int *startRet, int *endRet,$/;"	f	file:
parseBlockSeqPair	lib/blastParse.c	/^static void parseBlockSeqPair(struct blastFile *bf, struct blastBlock *bb,$/;"	f	file:
parseByteRange	lib/net.c	/^static void parseByteRange(char *url, ssize_t *rangeStart, ssize_t *rangeEnd, boolean terminateAtByteRange)$/;"	f	file:
parseCdsStat	hg/lib/genePred.c	/^static enum cdsStatus parseCdsStat(char *statStr)$/;"	f	file:
parseClassAndFamily	hg/lib/rmskOut.c	/^static void parseClassAndFamily(char *s, char **retClass, char **retFamily)$/;"	f	file:
parseColonRange	hg/lib/wiggleCart.c	/^static void parseColonRange(char *setting, double *retMin, double *retMax)$/;"	f	file:
parseColor	hg/lib/trackDbCustom.c	/^void parseColor(char *text, unsigned char *r, unsigned char *g, unsigned char *b)$/;"	f
parseColumnHeaderRow	lib/vcf.c	/^static void parseColumnHeaderRow(struct vcfFile *vcff, char *line)$/;"	f	file:
parseComplement	hg/lib/genbank.c	/^static boolean parseComplement(char *cdsBuf, struct genbankCds* cds)$/;"	f	file:
parseConfigDelete	hg/lib/hgConfig.c	/^static void parseConfigDelete(struct lineFile *lf, char *line)$/;"	f	file:
parseConfigFile	hg/lib/hgConfig.c	/^static void parseConfigFile(char *filename, int depth)$/;"	f	file:
parseConfigInclude	hg/lib/hgConfig.c	/^static void parseConfigInclude(struct lineFile *lf, int depth, char *line)$/;"	f	file:
parseConfigLine	hg/lib/hgConfig.c	/^static void parseConfigLine(struct lineFile *lf, int depth, char *line)$/;"	f	file:
parseContentRange	lib/net.c	/^static void parseContentRange(char *x, ssize_t *rangeStart, ssize_t *rangeEnd)$/;"	f	file:
parseCookie	lib/htmlPage.c	/^static struct htmlCookie *parseCookie(char *s)$/;"	f	file:
parseCookies	lib/cheapcgi.c	/^static void parseCookies(struct hash **retHash, struct cgiVar **retList)$/;"	f	file:
parseDatabaseLines	lib/blastParse.c	/^static void parseDatabaseLines(struct blastFile *bf, char *line, struct blastQuery *bq)$/;"	f	file:
parseDatabaseList	hg/lib/joiner.c	/^static struct slName *parseDatabaseList(struct lineFile *lf, char *s)$/;"	f	file:
parseDbxrefAttr	lib/gff3.c	/^static void parseDbxrefAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseDelimitedString	hg/lib/loweutils.c	/^int parseDelimitedString(char *inString, char delimiter, char *outString[], int outSize)$/;"	f
parseDependency	hg/lib/joiner.c	/^static struct joinerDependency *parseDependency(struct lineFile *lf, char *line)$/;"	f	file:
parseDerivesFromAttr	lib/gff3.c	/^static void parseDerivesFromAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseElement	lib/dtdParse.c	/^static struct dtdElement *parseElement($/;"	f	file:
parseEndCds	hg/lib/genbank.c	/^static boolean parseEndCds(char *endBuf, struct genbankCds* cds)$/;"	f	file:
parseEntity	lib/dtdParse.c	/^void parseEntity(struct hash *entityHash, struct hash *predefEntityHash,$/;"	f
parseErr	lib/hmmPfamParse.c	/^void parseErr(struct lineFile *lf, char *format, ...)$/;"	f
parseExp	lib/keys.c	/^static struct exp *parseExp(struct kxTok *tokList)$/;"	f	file:
parseFacility	lib/log.c	/^static int parseFacility(char *facility)$/;"	f	file:
parseFasta	lib/gff3.c	/^static void parseFasta(struct gff3File *g3f)$/;"	f	file:
parseFeatureOntology	lib/gff3.c	/^static void parseFeatureOntology(struct gff3File *g3f, char *line)$/;"	f	file:
parseFields	lib/gff3.c	/^static void parseFields(struct gff3Ann *g3a, char **words)$/;"	f	file:
parseFile	lib/gff3.c	/^static void parseFile(struct gff3File *g3f)$/;"	f	file:
parseFilterColumn	lib/vcf.c	/^static void parseFilterColumn(struct vcfFile *vcff, struct vcfRecord *record, char *filterStr)$/;"	f	file:
parseFixedStepSection	lib/bwgCreate.c	/^static void parseFixedStepSection(struct lineFile *lf, boolean clipDontDie, struct lm *lm,$/;"	f	file:
parseFtpMDTM	lib/net.c	/^static time_t parseFtpMDTM(char *rs)$/;"	f	file:
parseFtpSIZE	lib/net.c	/^static long long parseFtpSIZE(char *rs)$/;"	f	file:
parseGapAttr	lib/gff3.c	/^static void parseGapAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseGenomeBuild	lib/gff3.c	/^static void parseGenomeBuild(struct gff3File *g3f, char *line)$/;"	f	file:
parseGtfEnd	lib/gff.c	/^static void parseGtfEnd(char *s, struct gffFile *gff, struct gffLine *gl, $/;"	f	file:
parseHeader	lib/gff3.c	/^static void parseHeader(struct gff3File *g3f)$/;"	f	file:
parseIDAttr	lib/gff3.c	/^static void parseIDAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseIdent	lib/phyloTree.c	/^static struct phyloName *parseIdent(char **ptrPtr)$/;"	f	file:
parseIdentifierSet	hg/lib/joiner.c	/^static struct joinerSet *parseIdentifierSet(struct lineFile *lf, $/;"	f	file:
parseInfoColumn	lib/vcf.c	/^static void parseInfoColumn(struct vcfFile *vcff, struct vcfRecord *record, char *string)$/;"	f	file:
parseInfoValue	lib/vcf.c	/^static int parseInfoValue(struct vcfRecord *record, char *infoKey, enum vcfInfoType type,$/;"	f	file:
parseJoin	hg/lib/genbank.c	/^static boolean parseJoin(char *cdsBuf, struct genbankCds* cds)$/;"	f	file:
parseLine	lib/gff3.c	/^static void parseLine(struct gff3File *g3f, char *line)$/;"	f	file:
parseMeta	lib/gff3.c	/^static void parseMeta(struct gff3File *g3f, char *line)$/;"	f	file:
parseMetadataLine	lib/vcf.c	/^static void parseMetadataLine(struct vcfFile *vcff, char *line)$/;"	f	file:
parseMultiOption	lib/options.c	/^static void parseMultiOption(struct hash *hash, char *name, char* val, struct optionSpec *spec)$/;"	f	file:
parseMultiParts	lib/mime.c	/^struct mimePart *parseMultiParts(struct mimeBuf *b, char *altHeader)$/;"	f
parseNameAttr	lib/gff3.c	/^static void parseNameAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseNot	lib/keys.c	/^static struct exp *parseNot()$/;"	f	file:
parseNoteAttr	lib/gff3.c	/^static void parseNoteAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseOntologyTermAttr	lib/gff3.c	/^static void parseOntologyTermAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseOptions	lib/options.c	/^static struct hash *parseOptions(int *pArgc, char *argv[], boolean justFirst,$/;"	f	file:
parseOrExp	lib/keys.c	/^static struct exp *parseOrExp()$/;"	f	file:
parseParentAttr	lib/gff3.c	/^static void parseParentAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseParenthesized	lib/keys.c	/^static struct exp *parseParenthesized()$/;"	f	file:
parsePasvPort	lib/net.c	/^static int parsePasvPort(char *rs)$/;"	f	file:
parsePhase	lib/gff3.c	/^static int parsePhase(struct gff3Ann *g3a, char *str)$/;"	f	file:
parsePosition	hg/lib/hdb.c	/^boolean parsePosition(char *position, char **retChrom, uint *retStart, uint *retEnd)$/;"	f
parsePriority	lib/log.c	/^static int parsePriority(char *pri)$/;"	f	file:
parseQueryLines	lib/blastParse.c	/^static void parseQueryLines(struct blastFile *bf, char *line, struct blastQuery *bq)$/;"	f	file:
parseQuotedString	lib/obscure.c	/^boolean parseQuotedString( char *in, char *out, char **retNext)$/;"	f
parseQuotedStringNoEscapes	lib/obscure.c	/^boolean parseQuotedStringNoEscapes( char *in, char *out, char **retNext)$/;"	f
parseRange	hg/lib/genbank.c	/^static boolean parseRange(char *cdsBuf, struct genbankCds* cds)$/;"	f	file:
parseRefAndAlt	lib/vcf.c	/^static void parseRefAndAlt(struct vcfFile *vcff, struct vcfRecord *record, char *ref, char *alt)$/;"	f	file:
parseRelation	lib/keys.c	/^static struct exp *parseRelation()$/;"	f	file:
parseRestOfCdnaInfo	lib/wormdna.c	/^static void parseRestOfCdnaInfo(char *textInfo, struct wormCdnaInfo *retInfo)$/;"	f	file:
parseRgb	hg/lib/customFactory.c	/^static void parseRgb(char *s, int lineIx,$/;"	f	file:
parseRoundLine	lib/blastParse.c	/^static void parseRoundLine(char *line, struct blastQuery *bq)$/;"	f	file:
parseSeqSpec	lib/twoBit.c	/^static struct twoBitSeqSpec *parseSeqSpec(char *seqSpecStr)$/;"	f	file:
parseSequenceRegion	lib/gff3.c	/^static void parseSequenceRegion(struct gff3File *g3f, char *line)$/;"	f	file:
parseSizesStr	hg/lib/alignSeqSizes.c	/^static void parseSizesStr(char* sizesStr, struct hash* sizes)$/;"	f	file:
parseSourceOntology	lib/gff3.c	/^static void parseSourceOntology(struct gff3File *g3f, char *line)$/;"	f	file:
parseSpecies	lib/gff3.c	/^static void parseSpecies(struct gff3File *g3f, char *line)$/;"	f	file:
parseSrcDb	hg/lib/ccdsInfo.c	/^static enum ccdsInfoSrcDb parseSrcDb(char *srcDbStr, char *mrnaAcc)$/;"	f	file:
parseStartCds	hg/lib/genbank.c	/^static boolean parseStartCds(char *startBuf, struct genbankCds* cds)$/;"	f	file:
parseStdAttr	lib/gff3.c	/^static void parseStdAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseStdAttrs	lib/gff3.c	/^static void parseStdAttrs(struct gff3Ann *g3a)$/;"	f	file:
parseSteppedSection	lib/bwgCreate.c	/^static void parseSteppedSection(struct lineFile *lf, boolean clipDontDie, $/;"	f	file:
parseStrand	lib/gff3.c	/^static char *parseStrand(struct gff3Ann *g3a, char *strand)$/;"	f	file:
parseSubTree	lib/phyloTree.c	/^static struct phyloTree *parseSubTree(char **ptrPtr)$/;"	f	file:
parseSubrange	lib/nib.c	/^static void parseSubrange(char *subrange, char *name, $/;"	f	file:
parseTableSpec	hg/lib/joiner.c	/^static struct joinerTable *parseTableSpec(struct lineFile *lf, char *spec)$/;"	f	file:
parseTablesIgnored	hg/lib/joiner.c	/^static struct joinerIgnore *parseTablesIgnored(struct lineFile *lf, $/;"	f	file:
parseTargetAttr	lib/gff3.c	/^static void parseTargetAttr(struct gff3Ann *g3a, struct gff3Attr *attr)$/;"	f	file:
parseToLabeledFiles	hg/lib/chromGraphFactory.c	/^static struct labeledFile *parseToLabeledFiles(struct customPp *cpp,$/;"	f	file:
parseTrackLine	hg/lib/trackDbCustom.c	/^static void parseTrackLine(struct trackDb *bt, char *value,$/;"	f	file:
parseTrackQualifier	hg/lib/featureBits.c	/^static void parseTrackQualifier(char *trackQualifier, char **retTrack, $/;"	f	file:
parseType	hg/lib/joiner.c	/^static struct joinerType *parseType(struct lineFile *lf, $/;"	f	file:
parseUnsignedVal	lib/bwgCreate.c	/^static unsigned parseUnsignedVal(struct lineFile *lf, char *var, char *val)$/;"	f	file:
parseVarName	hg/lib/hVarSubst.c	/^static char *parseVarName(char *desc, char *varStart, char *varName, int varNameSize)$/;"	f	file:
parseVariableStepSection	lib/bwgCreate.c	/^static void parseVariableStepSection(struct lineFile *lf, boolean clipDontDie, struct lm *lm,$/;"	f	file:
parseVisibility	hg/lib/trackDbCustom.c	/^static unsigned char parseVisibility(char *value)$/;"	f	file:
partSize	lib/net.c	/^    off_t partSize;             \/* range size *\/$/;"	m	struct:parallelConn	file:
password	hg/lib/jksql.c	/^    char *password;				\/* Password. *\/$/;"	m	struct:sqlConnCache	file:
password	hg/lib/jksql.c	/^    char *password;     \/\/ database server password$/;"	m	struct:sqlProfile	file:
password	inc/net.h	/^   char password[128];	\/* Password  (optional)  *\/$/;"	m	struct:netParsedUrl
patClump	inc/patSpace.h	/^struct patClump$/;"	s
patSpace	jkOwnLib/patSpace.c	/^struct patSpace$/;"	s	file:
patSpaceFindOne	jkOwnLib/patSpace.c	/^struct patClump *patSpaceFindOne(struct patSpace *ps, DNA *dna, int dnaSize)$/;"	f
path	hg/inc/gbExtFile.h	/^    char *path;	\/* path *\/$/;"	m	struct:gbExtFile
path	hg/inc/liftOverChain.h	/^    char *path;	\/* Path to chain file *\/$/;"	m	struct:liftOverChain
path	hg/inc/snpExtFile.h	/^    char *path;	\/* Full path of file *\/$/;"	m	struct:snpExtFile
path	hg/lib/hdb.c	/^    char *path;                 \/* Path name for file. *\/$/;"	m	struct:largeSeqFile	file:
path	inc/htmlPage.h	/^    char *path;			\/* Cookie applies below this path I guess. *\/$/;"	m	struct:htmlCookie
pathName	inc/nibTwo.h	/^    char *pathName;		\/* Nib dir name or .2bit file name. *\/$/;"	m	struct:nibTwoCache
pathRelativeToFile	lib/filePath.c	/^char *pathRelativeToFile(char *baseFile, char *relPath)$/;"	f
patient	hg/inc/ispyTables.h	/^struct patient$/;"	s
patientCommaIn	hg/lib/ispyTables.c	/^struct patient *patientCommaIn(char **pS, struct patient *ret)$/;"	f
patientCommaOut	hg/inc/ispyTables.h	86;"	d
patientFree	hg/lib/ispyTables.c	/^void patientFree(struct patient **pEl)$/;"	f
patientFreeList	hg/lib/ispyTables.c	/^void patientFreeList(struct patient **pList)$/;"	f
patientGain	hg/inc/cnpIafrate2.h	/^    unsigned patientGain;	\/* Number of patients with gain *\/$/;"	m	struct:cnpIafrate2
patientInfo	hg/inc/ispyTables.h	/^struct patientInfo$/;"	s
patientInfoCommaIn	hg/lib/ispyTables.c	/^struct patientInfo *patientInfoCommaIn(char **pS, struct patientInfo *ret)$/;"	f
patientInfoCommaOut	hg/inc/ispyTables.h	168;"	d
patientInfoFree	hg/lib/ispyTables.c	/^void patientInfoFree(struct patientInfo **pEl)$/;"	f
patientInfoFreeList	hg/lib/ispyTables.c	/^void patientInfoFreeList(struct patientInfo **pList)$/;"	f
patientInfoLoadAll	hg/lib/ispyTables.c	/^struct patientInfo *patientInfoLoadAll(char *fileName) $/;"	f
patientInfoLoadAllByChar	hg/lib/ispyTables.c	/^struct patientInfo *patientInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
patientInfoLoadAllByTab	hg/inc/ispyTables.h	121;"	d
patientInfoLoadByQuery	hg/lib/ispyTables.c	/^struct patientInfo *patientInfoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
patientInfoLoadWithNull	hg/lib/ispyTables.c	/^struct patientInfo *patientInfoLoadWithNull(char **row)$/;"	f
patientInfoOutput	hg/lib/ispyTables.c	/^void patientInfoOutput(struct patientInfo *el, FILE *f, char sep, char lastSep) $/;"	f
patientInfoSaveToDb	hg/lib/ispyTables.c	/^void patientInfoSaveToDb(struct sqlConnection *conn, struct patientInfo *el, char *tableName, int updateSize)$/;"	f
patientInfoSaveToDbEscaped	hg/lib/ispyTables.c	/^void patientInfoSaveToDbEscaped(struct sqlConnection *conn, struct patientInfo *el, char *tableName, int updateSize)$/;"	f
patientInfoStaticLoadWithNull	hg/lib/ispyTables.c	/^void patientInfoStaticLoadWithNull(char **row, struct patientInfo *ret)$/;"	f
patientInfoTabOut	hg/inc/ispyTables.h	165;"	d
patientLoadAll	hg/lib/ispyTables.c	/^struct patient *patientLoadAll(char *fileName) $/;"	f
patientLoadAllByChar	hg/lib/ispyTables.c	/^struct patient *patientLoadAllByChar(char *fileName, char chopper) $/;"	f
patientLoadAllByTab	hg/inc/ispyTables.h	39;"	d
patientLoadByQuery	hg/lib/ispyTables.c	/^struct patient *patientLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
patientLoadWithNull	hg/lib/ispyTables.c	/^struct patient *patientLoadWithNull(char **row)$/;"	f
patientLoss	hg/inc/cnpIafrate2.h	/^    unsigned patientLoss;	\/* Number of patients with loss *\/$/;"	m	struct:cnpIafrate2
patientOutput	hg/lib/ispyTables.c	/^void patientOutput(struct patient *el, FILE *f, char sep, char lastSep) $/;"	f
patientSaveToDb	hg/lib/ispyTables.c	/^void patientSaveToDb(struct sqlConnection *conn, struct patient *el, char *tableName, int updateSize)$/;"	f
patientSaveToDbEscaped	hg/lib/ispyTables.c	/^void patientSaveToDbEscaped(struct sqlConnection *conn, struct patient *el, char *tableName, int updateSize)$/;"	f
patientStaticLoadWithNull	hg/lib/ispyTables.c	/^void patientStaticLoadWithNull(char **row, struct patient *ret)$/;"	f
patientTabOut	hg/inc/ispyTables.h	83;"	d
pattern	hg/inc/hui.h	/^   char *pattern; \/* Pattern to find. *\/$/;"	m	struct:mrnaFilter
patternSeq	hg/inc/rnaHybridization.h	/^    char *patternSeq;	\/* Sequence of pattern region 5'-3' *\/$/;"	m	struct:rnaHybridization
pbStamp	hg/inc/pbStamp.h	/^struct pbStamp$/;"	s
pbStampCommaIn	hg/lib/pbStamp.c	/^struct pbStamp *pbStampCommaIn(char **pS, struct pbStamp *ret)$/;"	f
pbStampCommaOut	hg/inc/pbStamp.h	63;"	d
pbStampFree	hg/lib/pbStamp.c	/^void pbStampFree(struct pbStamp **pEl)$/;"	f
pbStampFreeList	hg/lib/pbStamp.c	/^void pbStampFreeList(struct pbStamp **pList)$/;"	f
pbStampLoad	hg/lib/pbStamp.c	/^struct pbStamp *pbStampLoad(char **row)$/;"	f
pbStampLoadAll	hg/lib/pbStamp.c	/^struct pbStamp *pbStampLoadAll(char *fileName) $/;"	f
pbStampLoadAllByChar	hg/lib/pbStamp.c	/^struct pbStamp *pbStampLoadAllByChar(char *fileName, char chopper) $/;"	f
pbStampLoadAllByTab	hg/inc/pbStamp.h	41;"	d
pbStampOutput	hg/lib/pbStamp.c	/^void pbStampOutput(struct pbStamp *el, FILE *f, char sep, char lastSep) $/;"	f
pbStampStaticLoad	hg/lib/pbStamp.c	/^void pbStampStaticLoad(char **row, struct pbStamp *ret)$/;"	f
pbStampTabOut	hg/inc/pbStamp.h	60;"	d
pbytes	lib/gifdecomp.c	/^static UBYTE *pbytes;                      \/* Pointer to next byte in block *\/$/;"	v	file:
pcol	hg/inc/stanMad.h	/^    int pcol;	\/* The plate column from which a sample was printed. *\/$/;"	m	struct:stanMad
pcr	hg/inc/chicken13kInfo.h	/^    char pcr[2];	\/* PCR Amp Code *\/$/;"	m	struct:chicken13kInfo
pcrClumps	jkOwnLib/genoFind.c	/^static struct gfClump *pcrClumps(struct genoFind *gf, char *fPrimer, int fPrimerSize, $/;"	f	file:
pcrLength	hg/inc/vntr.h	/^    char *pcrLength;	\/* PCR product length (or Design_Failed) *\/$/;"	m	struct:vntr
pcrLocalStrand	jkOwnLib/gfPcrLib.c	/^static void pcrLocalStrand(char *pcrName, $/;"	f	file:
pcrResultCartVar	hg/lib/pcrResult.c	/^char *pcrResultCartVar(char *db)$/;"	f
pcrResultFakeTdb	hg/lib/pcrResult.c	/^struct trackDb *pcrResultFakeTdb()$/;"	f
pcrResultGetPrimers	hg/lib/pcrResult.c	/^void pcrResultGetPrimers(char *fileName, char **retFPrimer, char **retRPrimer)$/;"	f
pcrResultGetPsl	hg/lib/pcrResult.c	/^void pcrResultGetPsl(char *fileName, struct targetDb *target, char *item,$/;"	f
pcrResultItemAccName	hg/lib/pcrResult.c	/^char *pcrResultItemAccName(char *acc, char *name)$/;"	f
pcrResultItemAccession	hg/lib/pcrResult.c	/^char *pcrResultItemAccession(char *nameIn)$/;"	f
pcrResultItemName	hg/lib/pcrResult.c	/^char *pcrResultItemName(char *nameIn)$/;"	f
pcrResultParseCart	hg/lib/pcrResult.c	/^boolean pcrResultParseCart(char *db, struct cart *cart, char **retPslFile,$/;"	f
pdbId	hg/inc/lsSnpPdb.h	/^    char *pdbId;	\/* PDB id *\/$/;"	m	struct:lsSnpPdb
peakCluster	inc/peakCluster.h	/^struct peakCluster$/;"	s
peakClusterItems	lib/peakCluster.c	/^struct peakCluster *peakClusterItems(struct lm *lm, struct peakItem *itemList, $/;"	f
peakClusterMaker	inc/peakCluster.h	/^struct peakClusterMaker$/;"	s
peakClusterMakerAddFromSource	lib/peakCluster.c	/^void peakClusterMakerAddFromSource(struct peakClusterMaker *maker, struct peakSource *source)$/;"	f
peakClusterMakerChromList	lib/peakCluster.c	/^struct hashEl *peakClusterMakerChromList(struct peakClusterMaker *maker)$/;"	f
peakClusterMakerFree	lib/peakCluster.c	/^void peakClusterMakerFree(struct peakClusterMaker **pMaker)$/;"	f
peakClusterMakerNew	lib/peakCluster.c	/^struct peakClusterMaker *peakClusterMakerNew()$/;"	f
peakDim	inc/peakCluster.h	/^struct peakDim$/;"	s
peakItem	inc/peakCluster.h	/^struct peakItem$/;"	s
peakSource	inc/peakCluster.h	/^struct peakSource $/;"	s
peakSourceLoadAll	lib/peakCluster.c	/^struct peakSource *peakSourceLoadAll(char *fileName, int dimCount)$/;"	f
peekQuickHeapTop	lib/quickHeap.c	/^void *peekQuickHeapTop(struct quickHeap *h)$/;"	f
peelChains	lib/chainBlock.c	/^static struct chain *peelChains(char *qName, int qSize, char qStrand,$/;"	f	file:
pepPosition	hg/inc/soterm.h	/^	    uint pepPosition;$/;"	m	struct:soCall::__anon12::codingChange
pepPred	hg/inc/pepPred.h	/^struct pepPred$/;"	s
pepPredCommaIn	hg/lib/pepPred.c	/^struct pepPred *pepPredCommaIn(char **pS, struct pepPred *ret)$/;"	f
pepPredCommaOut	hg/inc/pepPred.h	42;"	d
pepPredFree	hg/lib/pepPred.c	/^void pepPredFree(struct pepPred **pEl)$/;"	f
pepPredFreeList	hg/lib/pepPred.c	/^void pepPredFreeList(struct pepPred **pList)$/;"	f
pepPredLoad	hg/lib/pepPred.c	/^struct pepPred *pepPredLoad(char **row)$/;"	f
pepPredOutput	hg/lib/pepPred.c	/^void pepPredOutput(struct pepPred *el, FILE *f, char sep, char lastSep) $/;"	f
pepPredStaticLoad	hg/lib/pepPred.c	/^void pepPredStaticLoad(char **row, struct pepPred *ret)$/;"	f
pepPredTabOut	hg/inc/pepPred.h	39;"	d
peptideMapping	hg/inc/peptideMapping.h	/^struct peptideMapping$/;"	s
peptideMappingCommaOut	hg/inc/peptideMapping.h	64;"	d
peptideMappingLoadAllByTab	hg/inc/peptideMapping.h	42;"	d
peptideMappingTabOut	hg/inc/peptideMapping.h	61;"	d
peptideRank	hg/inc/peptideMapping.h	/^    unsigned peptideRank;	\/* Rank of this hit, for peptides with multiple genomic hits *\/$/;"	m	struct:peptideMapping
peptideRepeatCount	hg/inc/peptideMapping.h	/^    unsigned peptideRepeatCount;	\/* Indicates how many times this same hit was observed *\/$/;"	m	struct:peptideMapping
peptides	hg/inc/snp125CodingCoordless.h	/^    char **peptides;	\/* Amino acid sequence corresponding to funcCodes *\/$/;"	m	struct:snp125CodingCoordless
perCpg	hg/inc/cpgIsland.h	/^    float perCpg;	\/* Percentage of island that is CpG *\/$/;"	m	struct:cpgIsland
perCpg	hg/inc/cpgIslandExt.h	/^    float perCpg;	\/* Percentage of island that is CpG *\/$/;"	m	struct:cpgIslandExt
perGc	hg/inc/cpgIsland.h	/^    float perGc;	\/* Percentage of island that is C or G *\/$/;"	m	struct:cpgIsland
perGc	hg/inc/cpgIslandExt.h	/^    float perGc;	\/* Percentage of island that is C or G *\/$/;"	m	struct:cpgIslandExt
perId	hg/inc/splignAlign.h	/^    float perId;	\/* percent identity *\/$/;"	m	struct:splignAlign
perIndel	hg/inc/simpleRepeat.h	/^    unsigned perIndel;	\/* Percentage Indel *\/$/;"	m	struct:simpleRepeat
perMatch	hg/inc/simpleRepeat.h	/^    unsigned perMatch;	\/* Percentage Match *\/$/;"	m	struct:simpleRepeat
perThreadAbortVars	lib/errabort.c	/^struct perThreadAbortVars$/;"	s	file:
percDel	inc/repMask.h	/^    float percDel;	\/* Percentage deletions. *\/$/;"	m	struct:repeatMaskOut
percDiv	inc/repMask.h	/^    float percDiv;	\/* Percentage base divergence. *\/$/;"	m	struct:repeatMaskOut
percInc	inc/repMask.h	/^    float percInc;	\/* Percentage inserts. *\/$/;"	m	struct:repeatMaskOut
percLen	hg/inc/lowelabPfamHit.h	/^    unsigned percLen;	\/* Percent length of Pfam domain relative to protein length) *\/$/;"	m	struct:lowelabPfamHits
percLen	hg/lib/lowelabPfamHit.h	/^    unsigned percLen;	\/* Percent length of Pfam domain relative to protein length) *\/$/;"	m	struct:lowelabPfamHits
percentident	hg/inc/cddInfo.h	/^    unsigned percentident;	\/* Data source *\/$/;"	m	struct:cddInfo
percentident	hg/inc/megablastInfo.h	/^    unsigned percentident;	\/* Data source *\/$/;"	m	struct:megablastInfo
percentlength	hg/inc/cddInfo.h	/^    unsigned percentlength;	\/* Data source *\/$/;"	m	struct:cddInfo
period	hg/inc/simpleRepeat.h	/^    unsigned period;	\/* Length of repeat unit *\/$/;"	m	struct:simpleRepeat
perr	lib/pthreadWrap.c	/^static void perr(char *function, int err)$/;"	f	file:
pfamAC	hg/inc/lowelabPfamHit.h	/^    char *pfamAC;	\/* Pfam accession number *\/$/;"	m	struct:lowelabPfamHits
pfamAC	hg/lib/lowelabPfamHit.h	/^    char *pfamAC;	\/* Pfam accession number *\/$/;"	m	struct:lowelabPfamHits
pfamID	hg/inc/lowelabPfamHit.h	/^    char *pfamID;	\/* Pfam ID *\/$/;"	m	struct:lowelabPfamHits
pfamID	hg/lib/lowelabPfamHit.h	/^    char *pfamID;	\/* Pfam ID *\/$/;"	m	struct:lowelabPfamHits
pgCodon	hg/inc/pgSnp.h	/^struct pgCodon$/;"	s
pgPhenoAssoc	hg/inc/pgPhenoAssoc.h	/^struct pgPhenoAssoc$/;"	s
pgPhenoAssocCommaIn	hg/lib/pgPhenoAssoc.c	/^struct pgPhenoAssoc *pgPhenoAssocCommaIn(char **pS, struct pgPhenoAssoc *ret)$/;"	f
pgPhenoAssocCommaOut	hg/inc/pgPhenoAssoc.h	59;"	d
pgPhenoAssocFree	hg/lib/pgPhenoAssoc.c	/^void pgPhenoAssocFree(struct pgPhenoAssoc **pEl)$/;"	f
pgPhenoAssocFreeList	hg/lib/pgPhenoAssoc.c	/^void pgPhenoAssocFreeList(struct pgPhenoAssoc **pList)$/;"	f
pgPhenoAssocLoad	hg/lib/pgPhenoAssoc.c	/^struct pgPhenoAssoc *pgPhenoAssocLoad(char **row)$/;"	f
pgPhenoAssocLoadAll	hg/lib/pgPhenoAssoc.c	/^struct pgPhenoAssoc *pgPhenoAssocLoadAll(char *fileName) $/;"	f
pgPhenoAssocLoadAllByChar	hg/lib/pgPhenoAssoc.c	/^struct pgPhenoAssoc *pgPhenoAssocLoadAllByChar(char *fileName, char chopper) $/;"	f
pgPhenoAssocLoadAllByTab	hg/inc/pgPhenoAssoc.h	37;"	d
pgPhenoAssocOutput	hg/lib/pgPhenoAssoc.c	/^void pgPhenoAssocOutput(struct pgPhenoAssoc *el, FILE *f, char sep, char lastSep) $/;"	f
pgPhenoAssocStaticLoad	hg/lib/pgPhenoAssoc.c	/^void pgPhenoAssocStaticLoad(char **row, struct pgPhenoAssoc *ret)$/;"	f
pgPhenoAssocTabOut	hg/inc/pgPhenoAssoc.h	56;"	d
pgPolyphenPred	hg/inc/pgPolyphenPred.h	/^struct pgPolyphenPred$/;"	s
pgPolyphenPredCommaIn	hg/lib/pgPolyphenPred.c	/^struct pgPolyphenPred *pgPolyphenPredCommaIn(char **pS, struct pgPolyphenPred *ret)$/;"	f
pgPolyphenPredCommaOut	hg/inc/pgPolyphenPred.h	61;"	d
pgPolyphenPredFree	hg/lib/pgPolyphenPred.c	/^void pgPolyphenPredFree(struct pgPolyphenPred **pEl)$/;"	f
pgPolyphenPredFreeList	hg/lib/pgPolyphenPred.c	/^void pgPolyphenPredFreeList(struct pgPolyphenPred **pList)$/;"	f
pgPolyphenPredLoadAll	hg/lib/pgPolyphenPred.c	/^struct pgPolyphenPred *pgPolyphenPredLoadAll(char *fileName) $/;"	f
pgPolyphenPredLoadAllByChar	hg/lib/pgPolyphenPred.c	/^struct pgPolyphenPred *pgPolyphenPredLoadAllByChar(char *fileName, char chopper) $/;"	f
pgPolyphenPredLoadAllByTab	hg/inc/pgPolyphenPred.h	39;"	d
pgPolyphenPredLoadWithNull	hg/lib/pgPolyphenPred.c	/^struct pgPolyphenPred *pgPolyphenPredLoadWithNull(char **row)$/;"	f
pgPolyphenPredOutput	hg/lib/pgPolyphenPred.c	/^void pgPolyphenPredOutput(struct pgPolyphenPred *el, FILE *f, char sep, char lastSep) $/;"	f
pgPolyphenPredStaticLoadWithNull	hg/lib/pgPolyphenPred.c	/^void pgPolyphenPredStaticLoadWithNull(char **row, struct pgPolyphenPred *ret)$/;"	f
pgPolyphenPredTabOut	hg/inc/pgPolyphenPred.h	58;"	d
pgSiftPred	hg/inc/pgSiftPred.h	/^struct pgSiftPred$/;"	s
pgSiftPredCommaIn	hg/lib/pgSiftPred.c	/^struct pgSiftPred *pgSiftPredCommaIn(char **pS, struct pgSiftPred *ret)$/;"	f
pgSiftPredCommaOut	hg/inc/pgSiftPred.h	65;"	d
pgSiftPredFree	hg/lib/pgSiftPred.c	/^void pgSiftPredFree(struct pgSiftPred **pEl)$/;"	f
pgSiftPredFreeList	hg/lib/pgSiftPred.c	/^void pgSiftPredFreeList(struct pgSiftPred **pList)$/;"	f
pgSiftPredLoadAll	hg/lib/pgSiftPred.c	/^struct pgSiftPred *pgSiftPredLoadAll(char *fileName) $/;"	f
pgSiftPredLoadAllByChar	hg/lib/pgSiftPred.c	/^struct pgSiftPred *pgSiftPredLoadAllByChar(char *fileName, char chopper) $/;"	f
pgSiftPredLoadAllByTab	hg/inc/pgSiftPred.h	43;"	d
pgSiftPredLoadWithNull	hg/lib/pgSiftPred.c	/^struct pgSiftPred *pgSiftPredLoadWithNull(char **row)$/;"	f
pgSiftPredOutput	hg/lib/pgSiftPred.c	/^void pgSiftPredOutput(struct pgSiftPred *el, FILE *f, char sep, char lastSep) $/;"	f
pgSiftPredStaticLoadWithNull	hg/lib/pgSiftPred.c	/^void pgSiftPredStaticLoadWithNull(char **row, struct pgSiftPred *ret)$/;"	f
pgSiftPredTabOut	hg/inc/pgSiftPred.h	62;"	d
pgSnp	hg/inc/pgSnp.h	/^struct pgSnp$/;"	s
pgSnpAsObj	hg/lib/pgSnp.c	/^struct asObject *pgSnpAsObj()$/;"	f
pgSnpAutoSqlString	hg/lib/pgSnp.c	/^static char *pgSnpAutoSqlString =$/;"	v	file:
pgSnpCommaIn	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpCommaIn(char **pS, struct pgSnp *ret)$/;"	f
pgSnpCommaOut	hg/inc/pgSnp.h	93;"	d
pgSnpFactory	hg/lib/customFactory.c	/^static struct customFactory pgSnpFactory =$/;"	v	typeref:struct:customFactory	file:
pgSnpFinish	hg/lib/customFactory.c	/^static struct customTrack *pgSnpFinish(struct customTrack *track, struct pgSnp *itemList)$/;"	f	file:
pgSnpFree	hg/lib/pgSnp.c	/^void pgSnpFree(struct pgSnp **pEl)$/;"	f
pgSnpFreeList	hg/lib/pgSnp.c	/^void pgSnpFreeList(struct pgSnp **pList)$/;"	f
pgSnpFromVcfRecord	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpFromVcfRecord(struct vcfRecord *rec)$/;"	f
pgSnpLineFileLoad	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpLineFileLoad(char **row, struct lineFile *lf)$/;"	f
pgSnpLoad	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpLoad(char **row)$/;"	f
pgSnpLoadAll	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpLoadAll(char *fileName)$/;"	f
pgSnpLoadAllByChar	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpLoadAllByChar(char *fileName, char chopper)$/;"	f
pgSnpLoadAllByTab	hg/inc/pgSnp.h	46;"	d
pgSnpLoadByQuery	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
pgSnpLoadNoBin	hg/lib/pgSnp.c	/^struct pgSnp *pgSnpLoadNoBin(char **row)$/;"	f
pgSnpLoader	hg/lib/customFactory.c	/^static struct customTrack *pgSnpLoader(struct customFactory *fac,$/;"	f	file:
pgSnpLoaderPipe	hg/lib/customFactory.c	/^static struct pipeline *pgSnpLoaderPipe(struct customTrack *track)$/;"	f	file:
pgSnpOutput	hg/lib/pgSnp.c	/^void pgSnpOutput(struct pgSnp *el, FILE *f, char sep, char lastSep)$/;"	f
pgSnpRecognizer	hg/lib/customFactory.c	/^static boolean pgSnpRecognizer(struct customFactory *fac,$/;"	f	file:
pgSnpSaveToDb	hg/lib/pgSnp.c	/^void pgSnpSaveToDb(struct sqlConnection *conn, struct pgSnp *el, char *tableName, int updateSize)$/;"	f
pgSnpSaveToDbEscaped	hg/lib/pgSnp.c	/^void pgSnpSaveToDbEscaped(struct sqlConnection *conn, struct pgSnp *el, char *tableName, int updateSize)$/;"	f
pgSnpStaticLoad	hg/lib/pgSnp.c	/^void pgSnpStaticLoad(char **row, struct pgSnp *ret)$/;"	f
pgSnpTabOut	hg/inc/pgSnp.h	90;"	d
pgi	hg/inc/knownInfo.h	/^    char *pgi;	\/* Genbank gi of protein seq. *\/$/;"	m	struct:knownInfo
pgoSig	inc/sig.h	16;"	d
phase	hg/inc/bgiGeneSnp.h	/^    char phase[2];	\/* Phase of SNP in codon (if applicable) *\/$/;"	m	struct:bgiGeneSnp
phase	hg/inc/clonePos.h	/^    unsigned char phase;	\/* htg phase *\/$/;"	m	struct:clonePos
phase	inc/ens.h	/^    char phase;				\/* AKA Frame - codon position of 1st base. *\/$/;"	m	struct:ensExon
phase	inc/gff3.h	/^    int phase; \/* For features of type "CDS", the phase indicates where the$/;"	m	struct:gff3Ann
phaseIIPopCount	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned char phaseIIPopCount;	\/* How many Phase II populations have data (0-4) *\/$/;"	m	struct:hapmapPhaseIIISummary
phaseToFrame	hg/lib/genePred.c	/^static int phaseToFrame(char phase)$/;"	f	file:
phhmTraceToAxt	lib/pairHmm.c	/^struct axt *phhmTraceToAxt(struct phmmMatrix *am, struct phmmAliPair *pairList, $/;"	f
phmmAliPair	lib/pairHmm.c	/^struct phmmAliPair$/;"	s	file:
phmmFindMatrixIx	lib/pairHmm.c	/^static void phmmFindMatrixIx(struct phmmMatrix *am, struct phmmMommy *cell, $/;"	f	file:
phmmFindMommy	lib/pairHmm.c	/^static struct phmmMommy *phmmFindMommy(struct phmmMatrix *am, $/;"	f	file:
phmmMatrix	inc/pairHmm.h	/^struct phmmMatrix$/;"	s
phmmMatrixFree	lib/pairHmm.c	/^void phmmMatrixFree(struct phmmMatrix **pAm)$/;"	f
phmmMatrixNew	lib/pairHmm.c	/^struct phmmMatrix *phmmMatrixNew(int stateCount,$/;"	f
phmmMommy	inc/pairHmm.h	/^struct phmmMommy$/;"	s
phmmMommyTraceBit	inc/pairHmm.h	29;"	d
phmmNameState	lib/pairHmm.c	/^struct phmmState *phmmNameState(struct phmmMatrix *am, int stateIx, $/;"	f
phmmNullMommy	lib/pairHmm.c	/^UBYTE phmmNullMommy = 0; \/* mommy value for orphans.... *\/$/;"	v
phmmPackMommy	inc/pairHmm.h	26;"	d
phmmPrintTrace	lib/pairHmm.c	/^void phmmPrintTrace(struct phmmMatrix *am, struct phmmAliPair *pairList, $/;"	f
phmmState	inc/pairHmm.h	/^struct phmmState$/;"	s
phmmTraceBack	lib/pairHmm.c	/^struct phmmAliPair *phmmTraceBack(struct phmmMatrix *am, struct phmmMommy *end)$/;"	f
phmmUnpackMommy	lib/pairHmm.c	/^void phmmUnpackMommy(UBYTE mommy, int *retStateIx, int *retQoff, $/;"	f
phoneHome	hg/lib/web.c	/^static void phoneHome()$/;"	f	file:
phyloAddEdge	lib/phyloTree.c	/^struct phyloTree *phyloAddEdge(struct phyloTree *parent, struct phyloTree *child)$/;"	f
phyloClearTreeMarks	lib/phyloTree.c	/^void phyloClearTreeMarks(struct phyloTree *tree)$/;"	f
phyloCountLeaves	lib/phyloTree.c	/^int phyloCountLeaves(struct phyloTree *tree)$/;"	f
phyloDebugTree	lib/phyloTree.c	/^void phyloDebugTree( struct phyloTree *tree,FILE *f)$/;"	f
phyloDeleteEdge	lib/phyloTree.c	/^void phyloDeleteEdge(struct phyloTree *tree, struct phyloTree *edge)$/;"	f
phyloFindMarkUpTree	lib/phyloTree.c	/^struct phyloTree *phyloFindMarkUpTree(struct phyloTree *tree)$/;"	f
phyloFindName	lib/phyloTree.c	/^struct phyloTree *phyloFindName( struct phyloTree *tree,char *name )$/;"	f
phyloFindPath	lib/phyloTree.c	/^char *phyloFindPath(struct phyloTree *tree, char *ref, char *cross)$/;"	f
phyloMarkUpTree	lib/phyloTree.c	/^void phyloMarkUpTree(struct phyloTree *tree)$/;"	f
phyloName	inc/phyloTree.h	/^struct phyloName$/;"	s
phyloNodeNames	lib/phyloTree.c	/^char *phyloNodeNames(struct phyloTree *tree)$/;"	f
phyloOpenTree	lib/phyloTree.c	/^struct phyloTree *phyloOpenTree(char *fileName)$/;"	f
phyloParseString	lib/phyloTree.c	/^struct phyloTree *phyloParseString(char *string)$/;"	f
phyloPrintTree	lib/phyloTree.c	/^void phyloPrintTree( struct phyloTree *tree,FILE *f)$/;"	f
phyloPrintTreeNoDups	lib/phyloTree.c	/^void phyloPrintTreeNoDups( struct phyloTree *tree,FILE *f)$/;"	f
phyloReRoot	lib/phyloTree.c	/^struct phyloTree *phyloReRoot(struct phyloTree *tree)$/;"	f
phyloReadTree	lib/phyloTree.c	/^struct phyloTree *phyloReadTree(struct lineFile *lf)$/;"	f
phyloTree	inc/phyloTree.h	/^struct phyloTree$/;"	s
picHeight	hg/inc/genoLay.h	/^    int picHeight;			\/* Total picture height *\/$/;"	m	struct:genoLay
picWidth	hg/inc/genoLay.h	/^    int picWidth;			\/* Total picture width *\/$/;"	m	struct:genoLay
picWidth	hg/inc/trackLayout.h	/^    int picWidth;		\/* Width of entire picture. *\/$/;"	m	struct:trackLayout
pid	inc/rudp.h	/^    int pid;                 \/* sender process id - helps filter out duplicate received packets *\/$/;"	m	struct:rudp
pid	inc/rudp.h	/^    int pid;            \/* sender process id - helps filter out duplicate received packets *\/$/;"	m	struct:rudpHeader
pid	lib/pipeline.c	/^    pid_t  pid;            \/* pid for process, -1 if not running *\/$/;"	m	struct:plProc	file:
piece	hg/inc/affyOffset.h	/^    char *piece;	\/* Name of 'piece' of genome, something like ctg21fin1piece100 *\/$/;"	m	struct:affyOffset
pipeBroke	jkOwnLib/genoFind.c	/^volatile boolean pipeBroke = FALSE;	\/* Flag broken pipes here. *\/$/;"	v
pipeCreate	lib/pipeline.c	/^static int pipeCreate(int *writeFd)$/;"	f	file:
pipeFd	lib/pipeline.c	/^    int pipeFd;                \/* fd of pipe to\/from process, -1 if none *\/$/;"	m	struct:pipeline	file:
pipeFh	lib/pipeline.c	/^    FILE* pipeFh;              \/* optional stdio around pipe *\/$/;"	m	struct:pipeline	file:
pipeLf	lib/pipeline.c	/^    struct lineFile *pipeLf;   \/* optional lineFile around pipe *\/$/;"	m	struct:pipeline	typeref:struct:pipeline::lineFile	file:
pipefd	lib/net.c	/^int pipefd[2];$/;"	m	struct:netConnectFtpParams	file:
pipeline	lib/pipeline.c	/^struct pipeline$/;"	s	file:
pipelineAppend	inc/pipeline.h	/^    pipelineAppend     = 0x10, \/* Append to output file (used only with pipelineWrite) *\/$/;"	e	enum:pipelineOpts
pipelineDesc	lib/pipeline.c	/^char *pipelineDesc(struct pipeline *pl)$/;"	f
pipelineDumpCmds	lib/pipeline.c	/^void pipelineDumpCmds(char ***cmds)$/;"	f
pipelineExec	lib/pipeline.c	/^static void pipelineExec(struct pipeline* pl, int stdinFd, int stdoutFd, int stderrFd,$/;"	f	file:
pipelineExecProc	lib/pipeline.c	/^static int pipelineExecProc(struct pipeline* pl, struct plProc *proc,$/;"	f	file:
pipelineFailExit	hg/lib/customFactory.c	/^static void pipelineFailExit(struct customTrack *track)$/;"	f	file:
pipelineFd	lib/pipeline.c	/^int pipelineFd(struct pipeline *pl)$/;"	f
pipelineFile	lib/pipeline.c	/^FILE *pipelineFile(struct pipeline *pl)$/;"	f
pipelineFindProc	lib/pipeline.c	/^static struct plProc *pipelineFindProc(struct pipeline *pl, pid_t pid)$/;"	f	file:
pipelineFree	lib/pipeline.c	/^void pipelineFree(struct pipeline **plPtr)$/;"	f
pipelineGroupExec	lib/pipeline.c	/^static void pipelineGroupExec(struct pipeline* pl, int stdinFd, int stdoutFd, int stderrFd,$/;"	f	file:
pipelineLineFile	lib/pipeline.c	/^struct lineFile *pipelineLineFile(struct pipeline *pl)$/;"	f
pipelineMemInput	inc/pipeline.h	/^    pipelineMemInput   = 0x08  \/* pipeline takes input from memory *\/$/;"	e	enum:pipelineOpts
pipelineNew	lib/pipeline.c	/^static struct pipeline* pipelineNew(char ***cmds, unsigned options)$/;"	f	file:
pipelineNoAbort	inc/pipeline.h	/^    pipelineNoAbort    = 0x04, \/* don't abort if a process exits non-zero,$/;"	e	enum:pipelineOpts
pipelineOpen	lib/pipeline.c	/^struct pipeline *pipelineOpen(char ***cmds, unsigned opts,$/;"	f
pipelineOpen1	lib/pipeline.c	/^struct pipeline *pipelineOpen1(char **cmd, unsigned opts,$/;"	f
pipelineOpenFd	lib/pipeline.c	/^struct pipeline *pipelineOpenFd(char ***cmds, unsigned opts,$/;"	f
pipelineOpenFd1	lib/pipeline.c	/^struct pipeline *pipelineOpenFd1(char **cmd, unsigned opts,$/;"	f
pipelineOpenMem	lib/pipeline.c	/^struct pipeline *pipelineOpenMem(char ***cmds, unsigned opts,$/;"	f
pipelineOpenMem1	lib/pipeline.c	/^struct pipeline *pipelineOpenMem1(char **cmd, unsigned opts,$/;"	f
pipelineOpts	inc/pipeline.h	/^enum pipelineOpts$/;"	g
pipelineRead	inc/pipeline.h	/^    pipelineRead       = 0x01, \/* read from pipeline *\/$/;"	e	enum:pipelineOpts
pipelineStartRead	lib/pipeline.c	/^static void pipelineStartRead(struct pipeline *pl, int stdinFd, int stderrFd,$/;"	f	file:
pipelineStartWrite	lib/pipeline.c	/^static void pipelineStartWrite(struct pipeline *pl, int stdoutFd, int stderrFd)$/;"	f	file:
pipelineWait	lib/pipeline.c	/^int pipelineWait(struct pipeline *pl)$/;"	f
pipelineWrite	inc/pipeline.h	/^    pipelineWrite      = 0x02, \/* write to pipeline *\/$/;"	e	enum:pipelineOpts
pixelBased	hg/inc/hvGfx.h	/^    boolean pixelBased;      \/* Real pixels, not PostScript or something. *\/$/;"	m	struct:hvGfx
pixelBased	inc/vGfx.h	/^    boolean pixelBased; \/* Real pixels, not PostScript or something. *\/$/;"	m	struct:vGfx
pixels	hg/inc/chromGraph.h	/^    int pixels;			\/* Actual pixels. *\/$/;"	m	struct:chromGraphSettings
pixels	inc/memgfx.h	/^    Color *pixels;$/;"	m	struct:memGfx
pixelsPerBase	hg/inc/genoLay.h	/^    double pixelsPerBase;		\/* Pixels per base. *\/$/;"	m	struct:genoLay
pl	inc/linefile.h	/^    struct pipeline *pl;        \/* pipeline if reading compressed *\/$/;"	m	struct:lineFile	typeref:struct:lineFile::pipeline
pl	lib/pipeline.c	/^    struct pipeline *pl;   \/* pipeline we are associated with *\/$/;"	m	struct:plProc	typeref:struct:plProc::pipeline	file:
plProc	lib/pipeline.c	/^struct plProc$/;"	s	file:
plProcExecChild	lib/pipeline.c	/^static void plProcExecChild(struct plProc* proc, int stdinFd, int stdoutFd, int stderrFd)$/;"	f	file:
plProcFree	lib/pipeline.c	/^static void plProcFree(struct plProc *proc)$/;"	f	file:
plProcHandleTerminate	lib/pipeline.c	/^static void plProcHandleTerminate(struct plProc* proc, int status)$/;"	f	file:
plProcMemWrite	lib/pipeline.c	/^static void plProcMemWrite(struct plProc* proc, int stdoutFd, int stderrFd, void *otherEndBuf, size_t otherEndBufSize)$/;"	f	file:
plProcNew	lib/pipeline.c	/^static struct plProc* plProcNew(char **cmd, struct pipeline *pl)$/;"	f	file:
plProcSetup	lib/pipeline.c	/^static void plProcSetup(struct plProc* proc, int stdinFd, int stdoutFd, int stderrFd)$/;"	f	file:
plProcStateTrans	lib/pipeline.c	/^static void plProcStateTrans(struct plProc *proc, enum procState newState)$/;"	f	file:
placeCount	hg/inc/fishClones.h	/^    unsigned placeCount;	\/* Number of times FISH'd *\/$/;"	m	struct:fishClones
placeType	hg/inc/fishClones.h	/^    char *placeType;	\/* How clone was placed on the sequence assembly *\/$/;"	m	struct:fishClones
plasEndPairs	hg/inc/plasEndPairs.h	/^struct plasEndPairs$/;"	s
plasEndPairsCommaIn	hg/lib/plasEndPairs.c	/^struct plasEndPairs *plasEndPairsCommaIn(char **pS, struct plasEndPairs *ret)$/;"	f
plasEndPairsCommaOut	hg/inc/plasEndPairs.h	57;"	d
plasEndPairsFree	hg/lib/plasEndPairs.c	/^void plasEndPairsFree(struct plasEndPairs **pEl)$/;"	f
plasEndPairsFreeList	hg/lib/plasEndPairs.c	/^void plasEndPairsFreeList(struct plasEndPairs **pList)$/;"	f
plasEndPairsLoad	hg/lib/plasEndPairs.c	/^struct plasEndPairs *plasEndPairsLoad(char **row)$/;"	f
plasEndPairsLoadAll	hg/lib/plasEndPairs.c	/^struct plasEndPairs *plasEndPairsLoadAll(char *fileName) $/;"	f
plasEndPairsLoadWhere	hg/lib/plasEndPairs.c	/^struct plasEndPairs *plasEndPairsLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
plasEndPairsOutput	hg/lib/plasEndPairs.c	/^void plasEndPairsOutput(struct plasEndPairs *el, FILE *f, char sep, char lastSep) $/;"	f
plasEndPairsTabOut	hg/inc/plasEndPairs.h	54;"	d
plat	hg/inc/stanMad.h	/^    int plat;	\/* The plate ID from which a sample was printed. *\/$/;"	m	struct:stanMad
plate	hg/inc/bdgpExprLink.h	/^    char *plate;	\/* DGC Plate *\/$/;"	m	struct:bdgpExprLink
plateNum	hg/inc/imageClone.h	/^    unsigned plateNum;	\/* Plate number *\/$/;"	m	struct:imageClone
platePos	hg/inc/bdgpExprLink.h	/^    int platePos;	\/* Position on plate *\/$/;"	m	struct:bdgpExprLink
platform	hg/inc/gwasCatalog.h	/^    char *platform;	\/* Platform and [SNPs passing QC] *\/$/;"	m	struct:gwasCatalog
plumberInstalled	lib/net.c	/^static boolean plumberInstalled = FALSE;$/;"	v	file:
plusMinus	hg/inc/polyGenotype.h	/^    int plusMinus;	\/* heterozygous allele count *\/$/;"	m	struct:polyGenotype
plusPlus	hg/inc/polyGenotype.h	/^    int plusPlus;	\/* homozygous wild type allele count *\/$/;"	m	struct:polyGenotype
plusStrandPos	lib/blastOut.c	/^static int plusStrandPos(int pos, int size, char strand, boolean isEnd)$/;"	f	file:
pm	hg/inc/affyPairs.h	/^    float pm;	\/* PM, the perfect-complement probe intensity. *\/$/;"	m	struct:affyPairs
pmId1	hg/inc/knownMore.h	/^    unsigned pmId1;	\/* I have no idea - grabbed from a HUGO nomeids.txt *\/$/;"	m	struct:knownMore
pmId2	hg/inc/knownMore.h	/^    unsigned pmId2;	\/* Likewise, I have no idea *\/$/;"	m	struct:knownMore
pmid	hg/inc/flyreg.h	/^    unsigned pmid;	\/* PubMed ID *\/$/;"	m	struct:flyreg
pmid	hg/inc/flyreg2.h	/^    unsigned pmid;	\/* PubMed ID *\/$/;"	m	struct:flyreg2
pmp	hg/inc/affyPairs.h	/^    float pmp;	\/* PM.p, the number of pixel used in the perfect-complement feature. *\/$/;"	m	struct:affyPairs
pms	hg/inc/affyPairs.h	/^    float pms;	\/* PM.s, the standard deviation of the pixels in the perfect-complement feature. *\/$/;"	m	struct:affyPairs
pngAbort	lib/pngwrite.c	/^static void pngAbort(png_structp png, png_const_charp errorMessage)$/;"	f	file:
pngWarn	lib/pngwrite.c	/^static void pngWarn(png_structp png, png_const_charp warningMessage)$/;"	f	file:
pointerOffset	jkOwnLib/splix.c	/^static void *pointerOffset(void *pt, bits64 offset)$/;"	f	file:
pointerOffset	lib/itsa.c	/^static void *pointerOffset(void *pt, bits64 offset)$/;"	f	file:
pointerOffset	lib/sufa.c	/^static void *pointerOffset(void *pt, bits64 offset)$/;"	f	file:
pointerOffset	lib/sufx.c	/^static void *pointerOffset(void *pt, bits64 offset)$/;"	f	file:
polyA	hg/inc/pseudoGeneLink.h	/^    unsigned polyA;	\/* count of As in polyA *\/$/;"	m	struct:pseudoGeneLink
polyA	hg/inc/retroMrnaInfo.h	/^    unsigned polyA;	\/* count of As in polyA col22 *\/$/;"	m	struct:retroMrnaInfo
polyA	hg/inc/ucscRetroInfo.h	/^    unsigned polyA;	\/* count of As in polyA col22 *\/$/;"	m	struct:ucscRetroInfo
polyAlen	hg/inc/pseudoGeneLink.h	/^    unsigned polyAlen;	\/* length of polyA *\/$/;"	m	struct:pseudoGeneLink
polyAlen	hg/inc/retroMrnaInfo.h	/^    unsigned polyAlen;	\/* length of polyA col56 *\/$/;"	m	struct:retroMrnaInfo
polyAlen	hg/inc/ucscRetroInfo.h	/^    unsigned polyAlen;	\/* length of polyA col53 *\/$/;"	m	struct:ucscRetroInfo
polyAstart	hg/inc/pseudoGeneLink.h	/^    int polyAstart;	\/* start of polyA, relative to end of pseudogene *\/$/;"	m	struct:pseudoGeneLink
polyAstart	hg/inc/retroMrnaInfo.h	/^    int polyAstart;	\/* start of polyA, relative to end of pseudogene col23 *\/$/;"	m	struct:retroMrnaInfo
polyAstart	hg/inc/ucscRetroInfo.h	/^    int polyAstart;	\/* start of polyA, relative to end of pseudogene col23 *\/$/;"	m	struct:ucscRetroInfo
polyClass	hg/inc/dbRIP.h	/^    char *polyClass;	\/* Repeat Class *\/$/;"	m	struct:dbRIP
polyFamily	hg/inc/dbRIP.h	/^    char *polyFamily;	\/* Repeat Family *\/$/;"	m	struct:dbRIP
polyGenotype	hg/inc/polyGenotype.h	/^struct polyGenotype$/;"	s
polyGenotypeCommaIn	hg/lib/polyGenotype.c	/^struct polyGenotype *polyGenotypeCommaIn(char **pS, struct polyGenotype *ret)$/;"	f
polyGenotypeCommaOut	hg/inc/polyGenotype.h	91;"	d
polyGenotypeFree	hg/lib/polyGenotype.c	/^void polyGenotypeFree(struct polyGenotype **pEl)$/;"	f
polyGenotypeFreeList	hg/lib/polyGenotype.c	/^void polyGenotypeFreeList(struct polyGenotype **pList)$/;"	f
polyGenotypeLoad	hg/lib/polyGenotype.c	/^struct polyGenotype *polyGenotypeLoad(char **row)$/;"	f
polyGenotypeLoadAll	hg/lib/polyGenotype.c	/^struct polyGenotype *polyGenotypeLoadAll(char *fileName) $/;"	f
polyGenotypeLoadAllByChar	hg/lib/polyGenotype.c	/^struct polyGenotype *polyGenotypeLoadAllByChar(char *fileName, char chopper) $/;"	f
polyGenotypeLoadAllByTab	hg/inc/polyGenotype.h	44;"	d
polyGenotypeLoadByQuery	hg/lib/polyGenotype.c	/^struct polyGenotype *polyGenotypeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
polyGenotypeOutput	hg/lib/polyGenotype.c	/^void polyGenotypeOutput(struct polyGenotype *el, FILE *f, char sep, char lastSep) $/;"	f
polyGenotypeSaveToDb	hg/lib/polyGenotype.c	/^void polyGenotypeSaveToDb(struct sqlConnection *conn, struct polyGenotype *el, char *tableName, int updateSize)$/;"	f
polyGenotypeSaveToDbEscaped	hg/lib/polyGenotype.c	/^void polyGenotypeSaveToDbEscaped(struct sqlConnection *conn, struct polyGenotype *el, char *tableName, int updateSize)$/;"	f
polyGenotypeStaticLoad	hg/lib/polyGenotype.c	/^void polyGenotypeStaticLoad(char **row, struct polyGenotype *ret)$/;"	f
polyGenotypeTabOut	hg/inc/polyGenotype.h	88;"	d
polySeq	hg/inc/dbRIP.h	/^    char *polySeq;	\/* sequence *\/$/;"	m	struct:dbRIP
polySource	hg/inc/dbRIP.h	/^    char *polySource;	\/* source *\/$/;"	m	struct:dbRIP
polySubfamily	hg/inc/dbRIP.h	/^    char *polySubfamily;	\/* Repeat Sub-family *\/$/;"	m	struct:dbRIP
pool	inc/gff3.h	/^    struct hash *pool;         \/* used to allocate string values that tend to$/;"	m	struct:gff3File	typeref:struct:gff3File::hash
pool	inc/vcf.h	/^    struct hash *pool;		\/\/ Used to allocate string values that tend to$/;"	m	struct:vcfFile	typeref:struct:vcfFile::hash
popAbortHandler	lib/errabort.c	/^void popAbortHandler()$/;"	f
popCount	hg/inc/hapmapAllelesSummary.h	/^    unsigned popCount;	\/* How many populations have data *\/$/;"	m	struct:hapmapAllelesSummary
popCount	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned char popCount;	\/* How many Phase III populations have data (1-11) *\/$/;"	m	struct:hapmapPhaseIIISummary
popFreqs	hg/inc/hgdpGeo.h	/^    float popFreqs[HGDPGEO_POP_COUNT];	\/* For each population in alphabetical order, the proportion of the population carrying the ancestral allele. *\/$/;"	m	struct:hgdpGeo
popMemHandler	lib/memalloc.c	/^struct memHandler *popMemHandler()$/;"	f
popVertex	hg/lib/geneGraph.c	/^static void popVertex()$/;"	f	file:
popWarnHandler	lib/errabort.c	/^void popWarnHandler()$/;"	f
population	hg/inc/delConrad2.h	/^    char *population;	\/* HapMap population *\/$/;"	m	struct:delConrad2
port	hg/inc/blatServers.h	/^    int port;	\/* TCP\/IP port on host *\/$/;"	m	struct:blatServers
port	hg/inc/hdb.h	/^    char *port;		\/* Port that hosts server. *\/$/;"	m	struct:blatServerTable
port	hg/lib/jksql.c	/^    unsigned int port;  \/\/ port for database server$/;"	m	struct:sqlProfile	file:
port	inc/gfWebLib.h	/^    char *port;		\/* IP Port on host. *\/$/;"	m	struct:gfServerAt
port	inc/net.h	/^   char port[16];       \/* Port, usually 80 or 8080. *\/$/;"	m	struct:netParsedUrl
port	lib/https.c	/^int port;$/;"	m	struct:netConnectHttpsParams	file:
pos	hg/inc/affyPairs.h	/^    unsigned pos;	\/* Pos, the position in the probeset of the central base of the probe. *\/$/;"	m	struct:affyPairs
pos	hg/inc/samAlignment.h	/^    unsigned pos;	\/* 1 based position *\/$/;"	m	struct:samAlignment
pos	hg/lib/chromGraphFactory.c	/^    int pos;$/;"	m	struct:chromPos	file:
pos	lib/trix.c	/^    off_t pos;	   \/* Position where prefix first occurs in file. *\/$/;"	m	struct:trixIxx	file:
posBasesHit	hg/inc/genomicSuperDups.h	/^    unsigned posBasesHit;	\/* HitPositive UnCovered *\/$/;"	m	struct:genomicSuperDups
posBuf	jkOwnLib/patSpace.c	/^    int posBuf[maxBlockCount];           \/* Histogram of hits to each block. *\/$/;"	m	struct:patSpace	file:
posConf	hg/inc/pseudoGeneLink.h	/^    float posConf;	\/* pvalue for positive *\/$/;"	m	struct:pseudoGeneLink
posConf	hg/inc/retroMrnaInfo.h	/^    float posConf;	\/* pvalue for positive col55 *\/$/;"	m	struct:retroMrnaInfo
posConf	hg/inc/ucscRetroInfo.h	/^    float posConf;	\/* pvalue for positive col52 *\/$/;"	m	struct:ucscRetroInfo
posCount	hg/inc/hgFind.h	/^    int posCount;                 \/* Number of positions in all tables. *\/$/;"	m	struct:hgPositions
posList	hg/inc/hgFind.h	/^    struct hgPos *posList;      \/* List of positions in this table. *\/$/;"	m	struct:hgPosTable	typeref:struct:hgPosTable::hgPos
posList	hg/lib/hgFind.c	/^    struct hgPos *posList;		\/* Associated list of positions. *\/$/;"	m	struct:tsrPos	typeref:struct:tsrPos::hgPos	file:
posString	hg/lib/mafGene.c	/^    char *posString;$/;"	m	struct:speciesInfo	file:
posStrings	hg/lib/mafGene.c	/^    struct slName *posStrings;$/;"	m	struct:speciesInfo	typeref:struct:speciesInfo::slName	file:
position	hg/inc/geneGraph.h	/^    int position;	\/* Where it is in genomic sequence. *\/$/;"	m	struct:ggVertex
position	hg/inc/rhMapInfo.h	/^    unsigned position;	\/* Position number in RH map for this linkage group *\/$/;"	m	struct:rhMapInfo
position	hg/inc/rhMapZfishInfo.h	/^    unsigned position;	\/* Position number in RH map for this linkage group *\/$/;"	m	struct:rhMapZfishInfo
position	hg/inc/rikenBest.h	/^    char *position;	\/* Position in genome of cluster chrN:start-end format *\/$/;"	m	struct:rikenBest
position	hg/inc/txGraph.h	/^    int position;	\/* Vertex position in genomic sequence. *\/$/;"	m	struct:txVertex
position	lib/dgRange.c	/^   int position;               \/* Currently assigned position. *\/$/;"	m	struct:bfVertex	file:
positionCgiName	hg/lib/cart.c	/^static char *positionCgiName = "position";$/;"	v	file:
positionIsGenome	inc/annoStreamer.h	/^    boolean positionIsGenome;$/;"	m	struct:annoStreamer
positions	hg/inc/liftOver.h	/^    positions = 2,$/;"	e	enum:liftOverFileType
positiveRangeIntersection	lib/common.c	/^int positiveRangeIntersection(int start1, int end1, int start2, int end2)$/;"	f
possibleCoord	hg/lib/coordConv.c	/^struct possibleCoord $/;"	s	file:
possibleSize	hg/inc/cdsOrtho.h	/^    int possibleSize;	\/* Possible size of orf in other species *\/$/;"	m	struct:cdsOrtho
postMeanSub	hg/inc/dless.h	/^    float postMeanSub;	\/* Mean of posterior distribution, subtree *\/$/;"	m	struct:dless
postMeanSup	hg/inc/dless.h	/^    float postMeanSup;	\/* Mean of posterior distribution, rest of tree *\/$/;"	m	struct:dless
postSurgery	hg/inc/ispyTables.h	/^struct postSurgery$/;"	s
postSurgeryCommaIn	hg/lib/ispyTables.c	/^struct postSurgery *postSurgeryCommaIn(char **pS, struct postSurgery *ret)$/;"	f
postSurgeryCommaOut	hg/inc/ispyTables.h	423;"	d
postSurgeryFree	hg/lib/ispyTables.c	/^void postSurgeryFree(struct postSurgery **pEl)$/;"	f
postSurgeryFreeList	hg/lib/ispyTables.c	/^void postSurgeryFreeList(struct postSurgery **pList)$/;"	f
postSurgeryLoadAll	hg/lib/ispyTables.c	/^struct postSurgery *postSurgeryLoadAll(char *fileName) $/;"	f
postSurgeryLoadAllByChar	hg/lib/ispyTables.c	/^struct postSurgery *postSurgeryLoadAllByChar(char *fileName, char chopper) $/;"	f
postSurgeryLoadAllByTab	hg/inc/ispyTables.h	376;"	d
postSurgeryLoadByQuery	hg/lib/ispyTables.c	/^struct postSurgery *postSurgeryLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
postSurgeryLoadWithNull	hg/lib/ispyTables.c	/^struct postSurgery *postSurgeryLoadWithNull(char **row)$/;"	f
postSurgeryOutput	hg/lib/ispyTables.c	/^void postSurgeryOutput(struct postSurgery *el, FILE *f, char sep, char lastSep) $/;"	f
postSurgerySaveToDb	hg/lib/ispyTables.c	/^void postSurgerySaveToDb(struct sqlConnection *conn, struct postSurgery *el, char *tableName, int updateSize)$/;"	f
postSurgerySaveToDbEscaped	hg/lib/ispyTables.c	/^void postSurgerySaveToDbEscaped(struct sqlConnection *conn, struct postSurgery *el, char *tableName, int updateSize)$/;"	f
postSurgeryStaticLoadWithNull	hg/lib/ispyTables.c	/^void postSurgeryStaticLoadWithNull(char **row, struct postSurgery *ret)$/;"	f
postSurgeryTabOut	hg/inc/ispyTables.h	420;"	d
postVarSub	hg/inc/dless.h	/^    float postVarSub;	\/* Variance of posterior distribution, subtree *\/$/;"	m	struct:dless
postVarSup	hg/inc/dless.h	/^    float postVarSup;	\/* Variance of posterior distribution, rest of tree *\/$/;"	m	struct:dless
powerOfTwoSize	inc/hash.h	/^    int powerOfTwoSize;		\/* Size of table as a power of two. *\/$/;"	m	struct:hash
ppBed	inc/bigBed.h	/^struct ppBed$/;"	s
prNameValCellInt	hg/lib/geneCheckWidget.c	/^static void prNameValCellInt(char *name, int value, int okVal, char *probClass)$/;"	f	file:
prNameValCellStr	hg/lib/geneCheckWidget.c	/^static void prNameValCellStr(char *name, char *value, char *okVal, char *probClass)$/;"	f	file:
prSnp	hg/lib/lsSnpPdbChimera.c	/^static void prSnp(FILE *xfh, struct lsSnpPdb *pdbSnp, char *primarySnpId)$/;"	f	file:
prTracksAnchor	hg/lib/geneCheckWidget.c	/^static void prTracksAnchor(struct cart *cart, char *chrom, int start, int end,$/;"	f	file:
preClusterNodes	lib/hacTree.c	/^INLINE struct hacTree preClusterNodes(const struct sortWrapper *leafWraps, int i, int runLength,$/;"	f
pred	lib/chainBlock.c	/^    struct kdBranch *pred;	\/* Predecessor. *\/$/;"	m	struct:predScore	typeref:struct:predScore::kdBranch	file:
predScore	lib/chainBlock.c	/^struct predScore$/;"	s	file:
prediction	hg/inc/pgPolyphenPred.h	/^    char *prediction;	\/* polyphens prediction, damaging, benign,... *\/$/;"	m	struct:pgPolyphenPred
prediction	hg/inc/pgSiftPred.h	/^    char *prediction;	\/* sifts prediction, damaging, tolerated,... *\/$/;"	m	struct:pgSiftPred
prefix	hg/inc/genbankBlackList.h	/^char *prefix;  \/* prefix to accession number (eg. FV) *\/$/;"	m	struct:blackListRange
prefix	lib/trix.c	/^    char prefix[trixPrefixSize];\/* Space padded first five letters of what we're indexing. *\/$/;"	m	struct:trixIxx	file:
prefixComments	hg/lib/wikiTrack.c	/^void prefixComments(struct wikiTrack *item, char *comments, char *userName,$/;"	f
prefixTermFormat	hg/lib/hgFindSpecCustom.c	/^static char *prefixTermFormat = "'%s%%'";$/;"	v	file:
prefixTermFormatRegex	hg/lib/hgFindSpecCustom.c	/^static char *prefixTermFormatRegex = "['\\"]?%s.*%%['\\"]?$";$/;"	v	file:
prepCompressedFile	hg/lib/customTrack.c	/^static char *prepCompressedFile(struct cart *cart, char *fileName,$/;"	f	file:
prev	inc/dlist.h	/^    struct dlNode *prev;$/;"	m	struct:dlNode	typeref:struct:dlNode::dlNode
prev	inc/seg.h	/^	struct segBlock *prev;$/;"	m	struct:segBlock	typeref:struct:segBlock::segBlock
prev	inc/shaRes.h	/^    struct shaResNode *prev;$/;"	m	struct:shaResNode	typeref:struct:shaResNode::shaResNode
prev	lib/memalloc.c	/^    struct carefulMemBlock *prev;$/;"	m	struct:carefulMemBlock	typeref:struct:carefulMemBlock::carefulMemBlock	file:
prevFramePos	hg/inc/mafFrames.h	/^    int prevFramePos;	\/* target position of the previous base (in transcription direction) that continues this frame, or -1 if none, or frame not contiguous *\/$/;"	m	struct:mafFrames
prevList	inc/diGraph.h	/^    struct dgConnection *prevList;  \/* Ways into node. *\/$/;"	m	struct:dgNode	typeref:struct:dgNode::dgConnection
prevPChrom	inc/annoGrator.h	/^    char *prevPChrom;			\/\/ for detection of unsorted input from primary$/;"	m	struct:annoGrator
prevPStart	inc/annoGrator.h	/^    uint prevPStart;			\/\/ for detection of unsorted input from primary$/;"	m	struct:annoGrator
prevPart	inc/gff3.h	/^    struct gff3Ann *prevPart; \/* Discontinuous features have linked annotation *\/$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3Ann
previousOffset	hg/lib/wigAsciiToBinary.c	/^static unsigned long long previousOffset = 0;  \/* for data missing detection *\/$/;"	v	file:
primLocus	hg/inc/tigrCmrGene.h	/^    char *primLocus;	\/* Primary Locus Name *\/$/;"	m	struct:tigrCmrGene
primary	hg/inc/txRnaAccs.h	/^    char *primary;	\/* Primary source of info - contains all exons *\/$/;"	m	struct:txRnaAccs
primaryId	hg/inc/hgnc.h	/^    char *primaryId;	\/* Primary ID *\/$/;"	m	struct:hgnc
primaryRow	lib/annoFormatTab.c	/^    struct annoRow *primaryRow;		\/\/ Single row from primary source$/;"	m	struct:annoFormatTab	typeref:struct:annoFormatTab::annoRow	file:
primarySource	inc/annoGratorQuery.h	/^    struct annoStreamer *primarySource;	\/\/ Annotations to be integrated with other annos.$/;"	m	struct:annoGratorQuery	typeref:struct:annoGratorQuery::annoStreamer
primer1	hg/inc/stsInfoMouse.h	/^    char *primer1;	\/* primer1 sequence *\/$/;"	m	struct:stsInfoMouse
primer1	hg/inc/stsInfoMouseNew.h	/^    char *primer1;	\/* primer1 sequence *\/$/;"	m	struct:stsInfoMouseNew
primer1	hg/inc/stsInfoRat.h	/^    char *primer1;	\/* primer1 sequence *\/$/;"	m	struct:stsInfoRat
primer2	hg/inc/stsInfoMouse.h	/^    char *primer2;	\/* primer2 sequence *\/$/;"	m	struct:stsInfoMouse
primer2	hg/inc/stsInfoMouseNew.h	/^    char *primer2;	\/* primer2 sequence *\/$/;"	m	struct:stsInfoMouseNew
primer2	hg/inc/stsInfoRat.h	/^    char *primer2;	\/* primer2 sequence *\/$/;"	m	struct:stsInfoRat
primerL	hg/inc/bgiSnp.h	/^    char *primerL;	\/* Left primer sequence *\/$/;"	m	struct:bgiSnp
primerName	hg/inc/stsInfoMouse.h	/^    char *primerName;	\/* sts Primer's name *\/$/;"	m	struct:stsInfoMouse
primerR	hg/inc/bgiSnp.h	/^    char *primerR;	\/* Right primer sequence *\/$/;"	m	struct:bgiSnp
primerSymbol	hg/inc/stsInfoMouse.h	/^    char *primerSymbol;	\/* sts Primer's symbol *\/$/;"	m	struct:stsInfoMouse
printAllAssemblyListHtmlParm	hg/lib/web.c	/^void printAllAssemblyListHtmlParm(char *db, struct dbDb *dbList,$/;"	f
printAssemblyListHtml	hg/lib/web.c	/^void printAssemblyListHtml(char *db, char *javascript)$/;"	f
printAssemblyListHtmlExtra	hg/lib/web.c	/^void printAssemblyListHtmlExtra(char *db, char *javascript)$/;"	f
printAxtTargetBlastTab	lib/blastOut.c	/^static void printAxtTargetBlastTab(FILE *f, struct axt *axt, int targetSize)$/;"	f	file:
printBbiUpdateTime	hg/lib/hui.c	/^void printBbiUpdateTime(time_t *timep)$/;"	f
printBlatAssemblyListHtml	hg/lib/web.c	/^void printBlatAssemblyListHtml(char *db)$/;"	f
printBlatGenomeListHtml	hg/lib/web.c	/^void printBlatGenomeListHtml(char *db, char *onChangeText)$/;"	f
printCladeListHtml	hg/lib/web.c	/^void printCladeListHtml(char *genome, char *onChangeText)$/;"	f
printColumns	lib/annoFormatTab.c	/^static void printColumns(FILE *f, struct annoStreamer *streamer, struct annoRow *row,$/;"	f	file:
printEdges	hg/lib/ggGraph.c	/^void printEdges(struct geneGraph *gg, int position)$/;"	f
printEdgesWithVertex	hg/lib/ggGraph.c	/^void printEdgesWithVertex(struct geneGraph *gg, int queryIx)$/;"	f
printGenomeListForCladeHtml	hg/lib/web.c	/^void printGenomeListForCladeHtml(char *db, char *onChangeText)$/;"	f
printGenomeListHtml	hg/lib/web.c	/^void printGenomeListHtml(char *db, char *onChangeText)$/;"	f
printHeaderColumns	lib/annoFormatTab.c	/^static void printHeaderColumns(FILE *f, struct annoStreamer *source, boolean isFirst)$/;"	f	file:
printHistoGram	hg/lib/wiggleUtils.c	/^void printHistoGram(struct histoResult *histoResults, boolean html)$/;"	f
printLiftOverGenomeList	hg/lib/web.c	/^void printLiftOverGenomeList(char *customOrgCgiName, char *db,$/;"	f
printLongWithCommas	lib/obscure.c	/^void printLongWithCommas(FILE *f, long long l)$/;"	f
printMatchers	lib/xenshow.c	/^static void printMatchers(char *a, char *b, int lineSize, FILE *f)$/;"	f	file:
printOne	hg/lib/hapmapSnpsCombined.c	/^void printOne(struct hapmapSnpsCombined *thisItem)$/;"	f
printOrgAssemblyListAxtInfo	hg/lib/web.c	/^void printOrgAssemblyListAxtInfo(char *dbCgi, char *javascript)$/;"	f
printPennantIconNote	hg/lib/hui.c	/^boolean printPennantIconNote(struct trackDb *tdb)$/;"	f
printPgDbLink	hg/lib/pgSnp.c	/^void printPgDbLink(char *db, struct trackDb *tdb, struct pgSnp *item)$/;"	f
printPgPolyphenPred	hg/lib/pgPolyphenPred.c	/^void printPgPolyphenPred (char *db, char *tableName, struct pgSnp *item)$/;"	f
printPgSiftPred	hg/lib/pgSiftPred.c	/^void printPgSiftPred (char *db, char *tableName, struct pgSnp *item)$/;"	f
printProbRow	lib/dnaMotif.c	/^static void printProbRow(FILE *f, char *label, float *p, int pCount)$/;"	f	file:
printPslDesc	lib/psl.c	/^static void printPslDesc(char* pslDesc, FILE* out, struct psl* psl)$/;"	f	file:
printRatioShades	hg/lib/hgExp.c	/^static void printRatioShades(char *colName, int repCount, $/;"	f	file:
printSeqCodDisplay	hg/lib/pgSnp.c	/^void printSeqCodDisplay(char *db, struct pgSnp *item, char *genePredTable)$/;"	f
printSomeAssemblyListHtml	hg/lib/web.c	/^void printSomeAssemblyListHtml(char *db, struct dbDb *dbList, char *javascript)$/;"	f
printSomeAssemblyListHtmlParm	hg/lib/web.c	/^void printSomeAssemblyListHtmlParm(char *db, struct dbDb *dbList,$/;"	f
printSomeGenomeListHtml	hg/lib/web.c	/^void printSomeGenomeListHtml(char *db, struct dbDb *dbList, char *onChangeText)$/;"	f
printSomeGenomeListHtmlNamed	hg/lib/web.c	/^void printSomeGenomeListHtmlNamed(char *customOrgCgiName, char *db, struct dbDb *dbList, char *onChangeText)$/;"	f
printSomeGenomeListHtmlNamedMaybeCheck	hg/lib/web.c	/^static void printSomeGenomeListHtmlNamedMaybeCheck(char *customOrgCgiName,$/;"	f	file:
printSpliceInfo	hg/lib/geneCheckWidget.c	/^static void printSpliceInfo(struct cart *cart, struct geneCheck *gc, struct geneCheckDetails *gcd,$/;"	f	file:
printUpdateTime	hg/lib/hui.c	/^void printUpdateTime(char *database, struct trackDb *tdb,$/;"	f
printVmPeak	lib/obscure.c	/^void printVmPeak()$/;"	f
priorMaxSub	hg/inc/dless.h	/^    unsigned priorMaxSub;	\/* Max of 95% c.i., subtree *\/$/;"	m	struct:dless
priorMaxSup	hg/inc/dless.h	/^    unsigned priorMaxSup;	\/* Max of 95% c.i., rest of tree *\/$/;"	m	struct:dless
priorMeanSub	hg/inc/dless.h	/^    float priorMeanSub;	\/* Mean of prior distribution, subtree *\/$/;"	m	struct:dless
priorMeanSup	hg/inc/dless.h	/^    float priorMeanSup;	\/* Mean of prior distribution, rest of tree *\/$/;"	m	struct:dless
priorMinSub	hg/inc/dless.h	/^    unsigned priorMinSub;	\/* Min of 95% c.i., subtree *\/$/;"	m	struct:dless
priorMinSup	hg/inc/dless.h	/^    unsigned priorMinSup;	\/* Min of 95% c.i., rest of tree *\/$/;"	m	struct:dless
priorVarSub	hg/inc/dless.h	/^    float priorVarSub;	\/* Variance of prior distribution, subtree *\/$/;"	m	struct:dless
priorVarSup	hg/inc/dless.h	/^    float priorVarSup;	\/* Variance of prior distribution, rest of tree *\/$/;"	m	struct:dless
prior_codes	lib/gifcomp.c	/^static short *prior_codes;$/;"	v	file:
priority	hg/inc/grp.h	/^    float priority;	\/* 0 is top *\/$/;"	m	struct:grp
priority	hg/inc/targetDb.h	/^    float priority;	\/* Relative priority compared to other targets for same db (smaller numbers are higher priority) *\/$/;"	m	struct:targetDb
priority	hg/inc/trackDb.h	/^    float priority;	\/* 0-100 - where to position.  0 is top *\/$/;"	m	struct:trackDb
priority	inc/diGraph.h	/^    int priority;       \/* Node priority. *\/$/;"	m	struct:dgNode
priorityNameTbl	lib/log.c	/^static struct nameVal priorityNameTbl[] = {$/;"	v	typeref:struct:nameVal	file:
priv	hg/inc/trackDb.h	/^    unsigned char priv;		\/* don't conflict with C++ keyword *\/$/;"	m	struct:trackDb
priv	hg/inc/trackTable.h	/^    unsigned char priv;		\/* don't conflict with C++ keyword *\/$/;"	m	struct:trackTable
priv	inc/phyloTree.h	/^    void *priv;$/;"	m	struct:phyloTree
prob	hg/inc/lowelabArkinOperonScore.h	/^    float prob;	\/* probability of operon *\/$/;"	m	struct:lowelabArkinOperonScore
prob	lib/dnaMotif.c	/^    double prob;	\/* Probability for this letter. *\/$/;"	m	struct:letterProb	file:
probability	hg/inc/itemConf.h	/^    float probability;	\/* Probability associated with element *\/$/;"	m	struct:itemConf
probeCount	hg/inc/affyAllExonProbe.h	/^    unsigned probeCount;	\/* ??? These are starting to all sound the same *\/$/;"	m	struct:affyAllExonProbe
probeEnd	jkOwnLib/crudeali.c	/^    int probeEnd;$/;"	m	struct:crudeExon	file:
probeEnd	jkOwnLib/crudeali.c	/^    int probeEnd;$/;"	m	struct:crudeGene	file:
probeId	hg/inc/stsMapMouse.h	/^    unsigned probeId;	\/* Probe Identification number of STS *\/$/;"	m	struct:stsMapMouse
probeOffset	jkOwnLib/crudeali.c	/^    int probeOffset;$/;"	m	struct:crudeHit	file:
probeSet	hg/inc/affyAtlas.h	/^    char *probeSet;	\/* probe set that signal corresponds to *\/$/;"	m	struct:affyAtlas
probeSet	hg/inc/affyPairs.h	/^    char *probeSet;	\/* set, the probe set. *\/$/;"	m	struct:affyPairs
probeSize	jkOwnLib/crudeali.c	/^    int probeSize;$/;"	m	struct:fastProber	file:
probeStart	jkOwnLib/crudeali.c	/^    int probeStart;$/;"	m	struct:crudeExon	file:
probeStart	jkOwnLib/crudeali.c	/^    int probeStart;$/;"	m	struct:crudeGene	file:
probeTile	jkOwnLib/crudeali.c	/^struct probeTile$/;"	s	file:
probes	hg/inc/cnpSebat.h	/^    unsigned probes;	\/* Number of probes *\/$/;"	m	struct:cnpSebat
probes	hg/inc/cnpSebat2.h	/^    unsigned probes;	\/* Number of probes *\/$/;"	m	struct:cnpSebat2
probes	jkOwnLib/crudeali.c	/^    struct probeTile *probes;$/;"	m	struct:fastProber	typeref:struct:fastProber::probeTile	file:
probesetType	hg/inc/affyAllExonProbe.h	/^    unsigned probesetType;	\/* ??? *\/$/;"	m	struct:affyAllExonProbe
problem	hg/inc/geneCheckDetails.h	/^    char *problem;	\/* problem *\/$/;"	m	struct:geneCheckDetails
procName	lib/pipeline.c	/^    char *procName;            \/* name to use in error messages. *\/$/;"	m	struct:pipeline	file:
procState	lib/pipeline.c	/^enum procState$/;"	g	file:
procStateDone	lib/pipeline.c	/^    procStateDone  \/\/ process finished (ok or failed)$/;"	e	enum:procState	file:
procStateNew	lib/pipeline.c	/^    procStateNew,  \/\/ plProc object created$/;"	e	enum:procState	file:
procStateRun	lib/pipeline.c	/^    procStateRun,  \/\/ proccess running$/;"	e	enum:procState	file:
processDb	hg/lib/chromGraphFactory.c	/^void processDb(struct sqlConnection *conn,$/;"	f
processGenomic	hg/lib/chromGraphFactory.c	/^static void processGenomic(struct sqlConnection *conn, struct customPp *cpp, $/;"	f	file:
processedIntrons	hg/inc/pseudoGeneLink.h	/^    int processedIntrons;	\/* intron prcessed out of retrogene *\/$/;"	m	struct:pseudoGeneLink
processedIntrons	hg/inc/retroMrnaInfo.h	/^    int processedIntrons;	\/* count of introns removed via retrotransposition col38 *\/$/;"	m	struct:retroMrnaInfo
processedIntrons	hg/inc/ucscRetroInfo.h	/^    int processedIntrons;	\/* count of introns removed via retrotransposition col36 *\/$/;"	m	struct:ucscRetroInfo
procs	lib/pipeline.c	/^    struct plProc *procs;      \/* list of processes *\/$/;"	m	struct:pipeline	typeref:struct:pipeline::plProc	file:
prodId	hg/inc/refLink.h	/^    unsigned prodId;	\/* pointer to prodName table *\/$/;"	m	struct:refLink
prodLen	hg/inc/llaInfo.h	/^    unsigned prodLen;	\/* PCR product length *\/$/;"	m	struct:llaInfo
producer	hg/inc/sageExp.h	/^    char *producer;	\/* source of tissue. *\/$/;"	m	struct:sageExp
product	hg/inc/codeBlastScore.h	/^    char product[256];	\/* Code *\/$/;"	m	struct:codeBlastScore
product	hg/inc/gbProtAnn.h	/^    char *product;	\/* Protein product name *\/$/;"	m	struct:gbProtAnn
product	hg/inc/gbRNAs.h	/^    char *product;	\/* Description of RNA gene *\/$/;"	m	struct:gbRNAs
product	hg/inc/minGeneInfo.h	/^    char *product;	\/* gene product *\/$/;"	m	struct:minGeneInfo
product	hg/inc/refLink.h	/^    char *product;	\/* Name of protein product *\/$/;"	m	struct:refLink
product	inc/wormdna.h	/^    char *product;              \/* Something like "cyclin-dependent kinase" *\/$/;"	m	struct:wormCdnaInfo
productName	hg/inc/knownInfo.h	/^    unsigned productName;	\/* Connects to productName table *\/$/;"	m	struct:knownInfo
profile	hg/lib/jksql.c	/^    struct sqlProfile *profile;                 \/* restrict to this profile *\/$/;"	m	struct:sqlConnCache	typeref:struct:sqlConnCache::sqlProfile	file:
profile	hg/lib/jksql.c	/^    struct sqlProfile *profile;      \/* profile for connection, can be NULL if host is explicit *\/$/;"	m	struct:sqlConnCacheEntry	typeref:struct:sqlConnCacheEntry::sqlProfile	file:
profile	hg/lib/jksql.c	/^    struct sqlProfile *profile;     \/* profile, or NULL if not opened via a profile *\/$/;"	m	struct:sqlConnection	typeref:struct:sqlConnection::sqlProfile	file:
profiles	hg/lib/jksql.c	/^static struct hash *profiles = NULL;              \/\/ profiles parsed from hg.conf, by name$/;"	v	typeref:struct:hash	file:
progType	lib/blastOut.c	/^static char *progType(boolean isProt, struct axtBundle *ab, boolean isUpper)$/;"	f	file:
program	inc/apacheLog.h	/^    char *program;	\/* Requesting program,  often Mozilla 4.0 *\/$/;"	m	struct:apacheAccessLog
program	inc/blastParse.h	/^    char *program;                      \/* Blastp, blastx, blastn, etc. *\/$/;"	m	struct:blastFile
program	inc/ens.h	/^    char *program;		\/* Program used. *\/$/;"	m	struct:ensAnalysis
programVersion	inc/ens.h	/^    char *programVersion;	\/* Version of program. *\/$/;"	m	struct:ensAnalysis
progressFile	hg/inc/customTrack.h	/^    char *progressFile;         \/* name of download progress file in trash *\/$/;"	m	struct:customTrack
progressWrite	hg/lib/customFactory.c	/^static void progressWrite(char *label, FILE *progressFH, off_t seekTo,$/;"	f	file:
projectIntArray	lib/rnautil.c	/^int *projectIntArray(int *in, char *ref, char refChar, int insertInt)$/;"	f
projectString	lib/rnautil.c	/^char * projectString(char *s, char *ref, char refChar, char insertChar)$/;"	f
propagateCase	lib/axt.c	/^static void propagateCase(struct axtScoreScheme *ss)$/;"	f	file:
prot	lib/udc.c	/^    struct udcProtocol *prot;	\/* Protocol specific data and methods. *\/$/;"	m	struct:udcFile	typeref:struct:udcFile::udcProtocol	file:
protAcc	hg/inc/ccdsInfo.h	/^    char protAcc[19];	\/* protein accession (NCBI or Hinxton) *\/$/;"	m	struct:ccdsInfo
protAcc	hg/inc/ensXRefZfish.h	/^    char *protAcc;	\/* RefSeq Protein Accession *\/$/;"	m	struct:ensXRefZfish
protAcc	hg/inc/kgXref.h	/^    char *protAcc;	\/* NCBI protein Accession number *\/$/;"	m	struct:kgXref
protAcc	hg/inc/refLink.h	/^    char *protAcc;	\/* protein accession *\/$/;"	m	struct:refLink
protCode	lib/dnautil.c	/^    AA protCode;	\/* Upper case. The "Standard" code *\/$/;"	m	struct:codonTable	file:
protCoord	hg/inc/lowelabPfamHit.h	/^    char *protCoord;	\/* Coordiates of Pfam domain hit within organism protein *\/$/;"	m	struct:lowelabPfamHits
protCoord	hg/lib/lowelabPfamHit.h	/^    char *protCoord;	\/* Coordiates of Pfam domain hit within organism protein *\/$/;"	m	struct:lowelabPfamHits
protFamDesc	hg/inc/pgSiftPred.h	/^    char *protFamDesc;	\/* protein family description *\/$/;"	m	struct:pgSiftPred
protFeat	hg/inc/protFeat.h	/^struct protFeat$/;"	s
protFeatCommaIn	hg/lib/protFeat.c	/^struct protFeat *protFeatCommaIn(char **pS, struct protFeat *ret)$/;"	f
protFeatCommaOut	hg/inc/protFeat.h	59;"	d
protFeatFree	hg/lib/protFeat.c	/^void protFeatFree(struct protFeat **pEl)$/;"	f
protFeatFreeList	hg/lib/protFeat.c	/^void protFeatFreeList(struct protFeat **pList)$/;"	f
protFeatLoad	hg/lib/protFeat.c	/^struct protFeat *protFeatLoad(char **row)$/;"	f
protFeatLoadAll	hg/lib/protFeat.c	/^struct protFeat *protFeatLoadAll(char *fileName) $/;"	f
protFeatLoadAllByChar	hg/lib/protFeat.c	/^struct protFeat *protFeatLoadAllByChar(char *fileName, char chopper) $/;"	f
protFeatLoadAllByTab	hg/inc/protFeat.h	37;"	d
protFeatOutput	hg/lib/protFeat.c	/^void protFeatOutput(struct protFeat *el, FILE *f, char sep, char lastSep) $/;"	f
protFeatStaticLoad	hg/lib/protFeat.c	/^void protFeatStaticLoad(char **row, struct protFeat *ret)$/;"	f
protFeatTabOut	hg/inc/protFeat.h	56;"	d
protId	hg/inc/lsSnpPdb.h	/^    char *protId;	\/* Protein Id *\/$/;"	m	struct:lsSnpPdb
protLSID	hg/inc/alleleFreqs.h	/^    char *protLSID;	\/* protLSID *\/$/;"	m	struct:alleleFreqs
protLSID	hg/inc/genotype.h	/^    char *protLSID;	\/*  protLSID	# urn:LSID:illumina.hapmap.org:Protocol:Golden_Gate_1.0.0:1 *\/$/;"	m	struct:genotype
protLSID	hg/inc/genotypeFreqs.h	/^    char *protLSID;	\/* protLSID *\/$/;"	m	struct:genotypeFreqs
protRef	hg/inc/borkPseudoHom.h	/^    char *protRef;	\/* String with swissprot or trembl reference  *\/$/;"	m	struct:borkPseudoHom
protVar	hg/inc/protVar.h	/^struct protVar$/;"	s
protVarAttr	hg/inc/protVar.h	/^struct protVarAttr$/;"	s
protVarAttrCommaIn	hg/lib/protVar.c	/^struct protVarAttr *protVarAttrCommaIn(char **pS, struct protVarAttr *ret)$/;"	f
protVarAttrCommaOut	hg/inc/protVar.h	247;"	d
protVarAttrFree	hg/lib/protVar.c	/^void protVarAttrFree(struct protVarAttr **pEl)$/;"	f
protVarAttrFreeList	hg/lib/protVar.c	/^void protVarAttrFreeList(struct protVarAttr **pList)$/;"	f
protVarAttrLoad	hg/lib/protVar.c	/^struct protVarAttr *protVarAttrLoad(char **row)$/;"	f
protVarAttrLoadAll	hg/lib/protVar.c	/^struct protVarAttr *protVarAttrLoadAll(char *fileName) $/;"	f
protVarAttrLoadAllByChar	hg/lib/protVar.c	/^struct protVarAttr *protVarAttrLoadAllByChar(char *fileName, char chopper) $/;"	f
protVarAttrLoadAllByTab	hg/inc/protVar.h	200;"	d
protVarAttrLoadByQuery	hg/lib/protVar.c	/^struct protVarAttr *protVarAttrLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
protVarAttrOutput	hg/lib/protVar.c	/^void protVarAttrOutput(struct protVarAttr *el, FILE *f, char sep, char lastSep) $/;"	f
protVarAttrSaveToDb	hg/lib/protVar.c	/^void protVarAttrSaveToDb(struct sqlConnection *conn, struct protVarAttr *el, char *tableName, int updateSize)$/;"	f
protVarAttrSaveToDbEscaped	hg/lib/protVar.c	/^void protVarAttrSaveToDbEscaped(struct sqlConnection *conn, struct protVarAttr *el, char *tableName, int updateSize)$/;"	f
protVarAttrStaticLoad	hg/lib/protVar.c	/^void protVarAttrStaticLoad(char **row, struct protVarAttr *ret)$/;"	f
protVarAttrTabOut	hg/inc/protVar.h	244;"	d
protVarCommaIn	hg/lib/protVar.c	/^struct protVar *protVarCommaIn(char **pS, struct protVar *ret)$/;"	f
protVarCommaOut	hg/inc/protVar.h	89;"	d
protVarFree	hg/lib/protVar.c	/^void protVarFree(struct protVar **pEl)$/;"	f
protVarFreeList	hg/lib/protVar.c	/^void protVarFreeList(struct protVar **pList)$/;"	f
protVarLink	hg/inc/protVar.h	/^struct protVarLink$/;"	s
protVarLinkCommaIn	hg/lib/protVar.c	/^struct protVarLink *protVarLinkCommaIn(char **pS, struct protVarLink *ret)$/;"	f
protVarLinkCommaOut	hg/inc/protVar.h	326;"	d
protVarLinkFree	hg/lib/protVar.c	/^void protVarLinkFree(struct protVarLink **pEl)$/;"	f
protVarLinkFreeList	hg/lib/protVar.c	/^void protVarLinkFreeList(struct protVarLink **pList)$/;"	f
protVarLinkLoad	hg/lib/protVar.c	/^struct protVarLink *protVarLinkLoad(char **row)$/;"	f
protVarLinkLoadAll	hg/lib/protVar.c	/^struct protVarLink *protVarLinkLoadAll(char *fileName) $/;"	f
protVarLinkLoadAllByChar	hg/lib/protVar.c	/^struct protVarLink *protVarLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
protVarLinkLoadAllByTab	hg/inc/protVar.h	279;"	d
protVarLinkLoadByQuery	hg/lib/protVar.c	/^struct protVarLink *protVarLinkLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
protVarLinkOutput	hg/lib/protVar.c	/^void protVarLinkOutput(struct protVarLink *el, FILE *f, char sep, char lastSep) $/;"	f
protVarLinkSaveToDb	hg/lib/protVar.c	/^void protVarLinkSaveToDb(struct sqlConnection *conn, struct protVarLink *el, char *tableName, int updateSize)$/;"	f
protVarLinkSaveToDbEscaped	hg/lib/protVar.c	/^void protVarLinkSaveToDbEscaped(struct sqlConnection *conn, struct protVarLink *el, char *tableName, int updateSize)$/;"	f
protVarLinkStaticLoad	hg/lib/protVar.c	/^void protVarLinkStaticLoad(char **row, struct protVarLink *ret)$/;"	f
protVarLinkTabOut	hg/inc/protVar.h	323;"	d
protVarLoad	hg/lib/protVar.c	/^struct protVar *protVarLoad(char **row)$/;"	f
protVarLoadAll	hg/lib/protVar.c	/^struct protVar *protVarLoadAll(char *fileName) $/;"	f
protVarLoadAllByChar	hg/lib/protVar.c	/^struct protVar *protVarLoadAllByChar(char *fileName, char chopper) $/;"	f
protVarLoadAllByTab	hg/inc/protVar.h	42;"	d
protVarLoadByQuery	hg/lib/protVar.c	/^struct protVar *protVarLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
protVarOutput	hg/lib/protVar.c	/^void protVarOutput(struct protVar *el, FILE *f, char sep, char lastSep) $/;"	f
protVarPos	hg/inc/protVar.h	/^struct protVarPos$/;"	s
protVarPosCommaIn	hg/lib/protVar.c	/^struct protVarPos *protVarPosCommaIn(char **pS, struct protVarPos *ret)$/;"	f
protVarPosCommaOut	hg/inc/protVar.h	170;"	d
protVarPosFree	hg/lib/protVar.c	/^void protVarPosFree(struct protVarPos **pEl)$/;"	f
protVarPosFreeList	hg/lib/protVar.c	/^void protVarPosFreeList(struct protVarPos **pList)$/;"	f
protVarPosLoad	hg/lib/protVar.c	/^struct protVarPos *protVarPosLoad(char **row)$/;"	f
protVarPosLoadAll	hg/lib/protVar.c	/^struct protVarPos *protVarPosLoadAll(char *fileName) $/;"	f
protVarPosLoadAllByChar	hg/lib/protVar.c	/^struct protVarPos *protVarPosLoadAllByChar(char *fileName, char chopper) $/;"	f
protVarPosLoadAllByTab	hg/inc/protVar.h	123;"	d
protVarPosLoadByQuery	hg/lib/protVar.c	/^struct protVarPos *protVarPosLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
protVarPosOutput	hg/lib/protVar.c	/^void protVarPosOutput(struct protVarPos *el, FILE *f, char sep, char lastSep) $/;"	f
protVarPosSaveToDb	hg/lib/protVar.c	/^void protVarPosSaveToDb(struct sqlConnection *conn, struct protVarPos *el, char *tableName, int updateSize)$/;"	f
protVarPosSaveToDbEscaped	hg/lib/protVar.c	/^void protVarPosSaveToDbEscaped(struct sqlConnection *conn, struct protVarPos *el, char *tableName, int updateSize)$/;"	f
protVarPosStaticLoad	hg/lib/protVar.c	/^void protVarPosStaticLoad(char **row, struct protVarPos *ret)$/;"	f
protVarPosTabOut	hg/inc/protVar.h	167;"	d
protVarSaveToDb	hg/lib/protVar.c	/^void protVarSaveToDb(struct sqlConnection *conn, struct protVar *el, char *tableName, int updateSize)$/;"	f
protVarSaveToDbEscaped	hg/lib/protVar.c	/^void protVarSaveToDbEscaped(struct sqlConnection *conn, struct protVar *el, char *tableName, int updateSize)$/;"	f
protVarStaticLoad	hg/lib/protVar.c	/^void protVarStaticLoad(char **row, struct protVar *ret)$/;"	f
protVarTabOut	hg/inc/protVar.h	86;"	d
protein	hg/inc/borf.h	/^    char *protein;	\/* Predicted protein *\/$/;"	m	struct:borf
protein	hg/inc/minGeneInfo.h	/^    char *protein;	\/* gene protein *\/$/;"	m	struct:minGeneInfo
protein	hg/inc/protFeat.h	/^    char *protein;	\/* Name of protein *\/$/;"	m	struct:protFeat
proteinID	hg/inc/sangerGene.h	/^    char *proteinID;	\/* Swiss-Prot protein ID *\/$/;"	m	struct:sangerGene
proteinId	hg/inc/gbProtAnn.h	/^    char *proteinId;	\/* GenBank protein accession(.version) *\/$/;"	m	struct:gbProtAnn
proteinId	hg/inc/knownInfo.h	/^    char *proteinId;	\/* Genbank accession of protein? *\/$/;"	m	struct:knownInfo
proteinId	inc/gff.h	/^    char *proteinId;      \/* protein_id in GTF, NULL in GFF. Not allocated here. *\/$/;"	m	struct:gffLine
protoGene	jkOwnLib/fuzzyFind.c	/^struct protoGene$/;"	s	file:
protocol	inc/net.h	/^   char protocol[16];	\/* Protocol - http or ftp, etc. *\/$/;"	m	struct:netParsedUrl
protocol	lib/udc.c	/^    char *protocol;		\/* The URL up to the first colon.  http: etc. *\/$/;"	m	struct:udcFile	file:
prow	hg/inc/stanMad.h	/^    char *prow;	\/* The plate row from which a sample was printed. *\/$/;"	m	struct:stanMad
pruneEmpties	hg/lib/hdb.c	/^static struct trackDb *pruneEmpties(struct trackDb *tdbList, char *db,$/;"	f	file:
prvNames	hg/inc/hgnc.h	/^    char *prvNames;	\/* Previous Names *\/$/;"	m	struct:hgnc
prvSymbols	hg/inc/hgnc.h	/^    char *prvSymbols;	\/* Previous Symbols *\/$/;"	m	struct:hgnc
ps	inc/pscmGfx.h	/^    struct psGfx *ps;	  \/* Underlying postScript object. *\/$/;"	m	struct:pscmGfx	typeref:struct:pscmGfx::psGfx
psBits	jkOwnLib/patSpace.c	18;"	d	file:
psBits	jkOwnLib/patSpace.c	26;"	d	file:
psClipRect	lib/psGfx.c	/^void psClipRect(struct psGfx *ps, double x, double y, $/;"	f
psClose	lib/psGfx.c	/^void psClose(struct psGfx **pPs)$/;"	f
psDrawBox	lib/psGfx.c	/^void psDrawBox(struct psGfx *ps, double x, double y, $/;"	f
psDrawEllipse	lib/psGfx.c	/^void psDrawEllipse(struct psGfx *ps, double x, double y, double xrad, double yrad,$/;"	f
psDrawLine	lib/psGfx.c	/^void psDrawLine(struct psGfx *ps, double x1, double y1, double x2, double y2)$/;"	f
psDrawPoly	lib/psGfx.c	/^void psDrawPoly(struct psGfx *ps, struct psPoly *poly, boolean filled)$/;"	f
psFillEllipse	lib/psGfx.c	/^void psFillEllipse(struct psGfx *ps, double x, double y, double xrad, double yrad)$/;"	f
psFillUnder	lib/psGfx.c	/^void psFillUnder(struct psGfx *ps, double x1, double y1, $/;"	f
psFloatOut	lib/psGfx.c	/^static void psFloatOut(FILE *f, double x)$/;"	f	file:
psGfx	inc/psGfx.h	/^struct psGfx $/;"	s
psHeight	lib/gemfont.h	/^WORD	psHeight;	\/* Height to set for equivalent postscript. *\/$/;"	m	struct:font_hdr
psLineTo	lib/psGfx.c	/^void psLineTo(struct psGfx *ps, double x, double y)$/;"	f
psMoveTo	lib/psGfx.c	/^void psMoveTo(struct psGfx *ps, double x, double y)$/;"	f
psOneColumn	lib/dnaMotif.c	/^static void psOneColumn(struct dnaMotif *motif, int pos,$/;"	f	file:
psOpen	lib/psGfx.c	/^struct psGfx *psOpen(char *fileName, $/;"	f
psPoint	inc/psPoly.h	/^struct psPoint$/;"	s
psPoly	inc/psPoly.h	/^struct psPoly$/;"	s
psPolyAddPoint	lib/psPoly.c	/^void psPolyAddPoint(struct psPoly *poly, double x, double y)$/;"	f
psPolyFindExtremes	lib/pscmGfx.c	/^void psPolyFindExtremes(struct gfxPoly *poly, $/;"	f
psPolyFree	lib/psPoly.c	/^void psPolyFree(struct psPoly **pPoly)$/;"	f
psPolyNew	lib/psPoly.c	/^struct psPoly *psPolyNew()$/;"	f
psPopG	lib/psGfx.c	/^void psPopG(struct psGfx *ps)$/;"	f
psPushG	lib/psGfx.c	/^void psPushG(struct psGfx *ps)$/;"	f
psSetColor	lib/psGfx.c	/^void psSetColor(struct psGfx *ps, int r, int g, int b)$/;"	f
psSetGray	lib/psGfx.c	/^void psSetGray(struct psGfx *ps, double grayVal)$/;"	f
psSetLineWidth	lib/psGfx.c	/^void psSetLineWidth(struct psGfx *ps, double factor)$/;"	f
psTextAt	lib/psGfx.c	/^void psTextAt(struct psGfx *ps, double x, double y, char *text)$/;"	f
psTextBox	lib/psGfx.c	/^void psTextBox(struct psGfx *ps, double x, double y, char *text)$/;"	f
psTextCentered	lib/psGfx.c	/^void psTextCentered(struct psGfx *ps, double x, double y, $/;"	f
psTextDown	lib/psGfx.c	/^void psTextDown(struct psGfx *ps, double x, double y, char *text)$/;"	f
psTextRight	lib/psGfx.c	/^void psTextRight(struct psGfx *ps, double x, double y, $/;"	f
psTimesFont	lib/psGfx.c	/^void psTimesFont(struct psGfx *ps, double size)$/;"	f
psTranslate	lib/psGfx.c	/^void psTranslate(struct psGfx *ps, double xTrans, double yTrans)$/;"	f
psWhOut	lib/psGfx.c	/^void psWhOut(struct psGfx *ps, double width, double height)$/;"	f
psWriteHeader	lib/psGfx.c	/^static void psWriteHeader(FILE *f, double width, double height)$/;"	f	file:
psXyOut	lib/psGfx.c	/^void psXyOut(struct psGfx *ps, double x, double y)$/;"	f
pscmAddColor	lib/pscmGfx.c	/^static Color pscmAddColor(struct pscmGfx *pscm, $/;"	f	file:
pscmBox	lib/pscmGfx.c	/^void pscmBox(struct pscmGfx *pscm, int x, int y, $/;"	f
pscmBoxToPs	lib/pscmGfx.c	/^void pscmBoxToPs(struct pscmGfx *pscm, int x, int y, $/;"	f
pscmClose	lib/pscmGfx.c	/^void pscmClose(struct pscmGfx **pPscm)$/;"	f
pscmClosestColor	lib/pscmGfx.c	/^static Color pscmClosestColor(struct pscmGfx *pscm, $/;"	f	file:
pscmColorIxToRgb	lib/pscmGfx.c	/^struct rgbColor pscmColorIxToRgb(struct pscmGfx *pscm, int colorIx)$/;"	f
pscmDot	lib/pscmGfx.c	/^void pscmDot(struct pscmGfx *pscm, int x, int y, int color)$/;"	f
pscmDrawPoly	lib/pscmGfx.c	/^void pscmDrawPoly(struct pscmGfx *pscm, struct gfxPoly *poly, Color color, $/;"	f
pscmFatLine	lib/pscmGfx.c	/^void pscmFatLine(struct pscmGfx *pscm, double x1, double y1, double x2, double y2)$/;"	f
pscmFillUnder	lib/pscmGfx.c	/^void pscmFillUnder(struct pscmGfx *pscm, int x1, int y1, int x2, int y2, $/;"	f
pscmFindColorIx	lib/pscmGfx.c	/^int pscmFindColorIx(struct pscmGfx *pscm, int r, int g, int b)$/;"	f
pscmGetFontPixelHeight	lib/pscmGfx.c	/^int pscmGetFontPixelHeight(struct pscmGfx *pscm, MgFont *font)$/;"	f
pscmGetFontStringWidth	lib/pscmGfx.c	/^int pscmGetFontStringWidth(struct pscmGfx *pscm, MgFont *font, char *string)$/;"	f
pscmGetHint	lib/pscmGfx.c	/^char *pscmGetHint(struct pscmGfx *pscm, char *hint)$/;"	f
pscmGfx	inc/pscmGfx.h	/^struct pscmGfx $/;"	s
pscmIsClockwise	lib/pscmGfx.c	/^boolean pscmIsClockwise(struct psPoly *psPoly)$/;"	f
pscmLine	lib/pscmGfx.c	/^void pscmLine(struct pscmGfx *pscm, $/;"	f
pscmOpen	lib/pscmGfx.c	/^struct pscmGfx *pscmOpen(int width, int height, char *file)$/;"	f
pscmPolyFatten	lib/pscmGfx.c	/^void pscmPolyFatten(struct psPoly *psPoly, $/;"	f
pscmPolyTrapStrokeOutline	lib/pscmGfx.c	/^void pscmPolyTrapStrokeOutline(struct pscmGfx *pscm, struct psPoly *psPoly)$/;"	f
pscmSetClip	lib/pscmGfx.c	/^void pscmSetClip(struct pscmGfx *pscm, int x, int y, int width, int height)$/;"	f
pscmSetColor	lib/pscmGfx.c	/^void pscmSetColor(struct pscmGfx *pscm, Color color)$/;"	f
pscmSetDefaultColorMap	lib/pscmGfx.c	/^static void pscmSetDefaultColorMap(struct pscmGfx *pscm)$/;"	f	file:
pscmSetFont	lib/pscmGfx.c	/^static void pscmSetFont(struct pscmGfx *pscm, MgFont *font)$/;"	f	file:
pscmSetHint	lib/pscmGfx.c	/^void pscmSetHint(struct pscmGfx *pscm, char *hint, char *value)$/;"	f
pscmSetWriteMode	lib/pscmGfx.c	/^void pscmSetWriteMode(struct pscmGfx *pscm, unsigned int writeMode)$/;"	f
pscmText	lib/pscmGfx.c	/^void pscmText(struct pscmGfx *pscm, int x, int y, int color, $/;"	f
pscmTextCentered	lib/pscmGfx.c	/^void pscmTextCentered(struct pscmGfx *pscm, int x, int y, $/;"	f
pscmTextRight	lib/pscmGfx.c	/^void pscmTextRight(struct pscmGfx *pscm, int x, int y, int width, int height,$/;"	f
pscmUnclip	lib/pscmGfx.c	/^void pscmUnclip(struct pscmGfx *pscm)$/;"	f
pscmVerticalSmear	lib/pscmGfx.c	/^static void pscmVerticalSmear(struct pscmGfx *pscm,$/;"	f	file:
pscreen	hg/inc/pscreen.h	/^struct pscreen$/;"	s
pscreenCommaIn	hg/lib/pscreen.c	/^struct pscreen *pscreenCommaIn(char **pS, struct pscreen *ret)$/;"	f
pscreenCommaOut	hg/inc/pscreen.h	59;"	d
pscreenFree	hg/lib/pscreen.c	/^void pscreenFree(struct pscreen **pEl)$/;"	f
pscreenFreeList	hg/lib/pscreen.c	/^void pscreenFreeList(struct pscreen **pList)$/;"	f
pscreenLoad	hg/lib/pscreen.c	/^struct pscreen *pscreenLoad(char **row)$/;"	f
pscreenLoadAll	hg/lib/pscreen.c	/^struct pscreen *pscreenLoadAll(char *fileName) $/;"	f
pscreenLoadAllByChar	hg/lib/pscreen.c	/^struct pscreen *pscreenLoadAllByChar(char *fileName, char chopper) $/;"	f
pscreenLoadAllByTab	hg/inc/pscreen.h	37;"	d
pscreenOutput	hg/lib/pscreen.c	/^void pscreenOutput(struct pscreen *el, FILE *f, char sep, char lastSep) $/;"	f
pscreenTabOut	hg/inc/pscreen.h	56;"	d
pseudoGeneLink	hg/inc/pseudoGeneLink.h	/^struct pseudoGeneLink$/;"	s
pseudoGeneLinkCommaIn	hg/lib/pseudoGeneLink.c	/^struct pseudoGeneLink *pseudoGeneLinkCommaIn(char **pS, struct pseudoGeneLink *ret)$/;"	f
pseudoGeneLinkCommaOut	hg/inc/pseudoGeneLink.h	106;"	d
pseudoGeneLinkFree	hg/lib/pseudoGeneLink.c	/^void pseudoGeneLinkFree(struct pseudoGeneLink **pEl)$/;"	f
pseudoGeneLinkFreeList	hg/lib/pseudoGeneLink.c	/^void pseudoGeneLinkFreeList(struct pseudoGeneLink **pList)$/;"	f
pseudoGeneLinkLoad	hg/lib/pseudoGeneLink.c	/^struct pseudoGeneLink *pseudoGeneLinkLoad(char **row)$/;"	f
pseudoGeneLinkLoadAll	hg/lib/pseudoGeneLink.c	/^struct pseudoGeneLink *pseudoGeneLinkLoadAll(char *fileName) $/;"	f
pseudoGeneLinkLoadAllByChar	hg/lib/pseudoGeneLink.c	/^struct pseudoGeneLink *pseudoGeneLinkLoadAllByChar(char *fileName, char chopper) $/;"	f
pseudoGeneLinkLoadAllByTab	hg/inc/pseudoGeneLink.h	84;"	d
pseudoGeneLinkOutput	hg/lib/pseudoGeneLink.c	/^void pseudoGeneLinkOutput(struct pseudoGeneLink *el, FILE *f, char sep, char lastSep) $/;"	f
pseudoGeneLinkTabOut	hg/inc/pseudoGeneLink.h	103;"	d
psiRound	inc/blastParse.h	/^    int psiRound;                       \/* PSI BLAST round, or 0 if not PSI blast *\/$/;"	m	struct:blastGappedAli
psiRounds	inc/blastParse.h	/^    int psiRounds;                      \/* PSI BLAST rounds, or 0 if not PSI blast *\/$/;"	m	struct:blastQuery
psl	inc/psl.h	/^struct psl$/;"	s
pslCalcMilliBad	lib/psl.c	/^int pslCalcMilliBad(struct psl *psl, boolean isMrna)$/;"	f
pslCfgUi	hg/lib/hui.c	/^void pslCfgUi(char *db, struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed)$/;"	f
pslCheck	lib/psl.c	/^int pslCheck(char *pslDesc, FILE* out, struct psl* psl)$/;"	f
pslCmpMatch	lib/psl.c	/^int pslCmpMatch(const void *va, const void *vb)$/;"	f
pslCmpQuery	lib/psl.c	/^int pslCmpQuery(const void *va, const void *vb)$/;"	f
pslCmpQueryScore	lib/psl.c	/^int pslCmpQueryScore(const void *va, const void *vb)$/;"	f
pslCmpScore	lib/psl.c	/^int pslCmpScore(const void *va, const void *vb)$/;"	f
pslCmpScoreDesc	lib/psl.c	/^int pslCmpScoreDesc(const void *va, const void *vb)$/;"	f
pslCmpTarget	lib/psl.c	/^int pslCmpTarget(const void *va, const void *vb)$/;"	f
pslCmpTargetAndStrand	lib/psl.c	/^int pslCmpTargetAndStrand(const void *va, const void *vb)$/;"	f
pslCommaIn	lib/psl.c	/^struct psl *pslCommaIn(char **pS, struct psl *ret)$/;"	f
pslCommaOut	inc/psl.h	98;"	d
pslDefaultFormat	hg/lib/hgFindSpecCustom.c	/^static char *pslDefaultFormat =$/;"	v	file:
pslDump	lib/psl.c	/^void pslDump(struct psl *psl, FILE *f)$/;"	f
pslFactory	hg/lib/customFactory.c	/^static struct customFactory pslFactory =$/;"	v	typeref:struct:customFactory	file:
pslFileOpen	lib/psl.c	/^struct lineFile *pslFileOpen(char *fileName)$/;"	f
pslFileOpenWithMeta	lib/psl.c	/^struct lineFile *pslFileOpenWithMeta(char *fileName, FILE *f)$/;"	f
pslFileOpenWithUniqueMeta	lib/psl.c	/^struct lineFile *pslFileOpenWithUniqueMeta(char *fileName, FILE *f)$/;"	f
pslFree	lib/psl.c	/^void pslFree(struct psl **pEl)$/;"	f
pslFreeList	lib/psl.c	/^void pslFreeList(struct psl **pList)$/;"	f
pslFromAlign	lib/psl.c	/^struct psl* pslFromAlign(char *qName, int qSize, int qStart, int qEnd, char *qString,$/;"	f
pslFromFakeFfAli	lib/psl.c	/^struct psl *pslFromFakeFfAli(struct ffAli *ff, $/;"	f
pslFromGff3Cigar	lib/psl.c	/^struct psl* pslFromGff3Cigar(char *qName, int qSize, int qStart, int qEnd,$/;"	f
pslGenoShowAlignment	lib/pslGenoShow.c	/^int pslGenoShowAlignment(struct psl *psl, boolean isProt,$/;"	f
pslGetCreateSql	lib/psl.c	/^char* pslGetCreateSql(char* table, unsigned options, int tNameIdxLen)$/;"	f
pslGrow	lib/psl.c	/^void pslGrow(struct psl *psl, int *blockSpacePtr)$/;"	f
pslHasIntron	lib/psl.c	/^boolean pslHasIntron(struct psl *psl, struct dnaSeq *seq, int seqOffset)$/;"	f
pslHead	jkOwnLib/gfOut.c	/^static void pslHead(struct gfOutput *out, FILE *f)$/;"	f	file:
pslIdent	lib/psl.c	/^float pslIdent(struct psl *psl)$/;"	f
pslIntronOrientation	lib/psl.c	/^int pslIntronOrientation(struct psl *psl, struct dnaSeq *genoSeq, int offset)$/;"	f
pslIsProtein	lib/psl.c	/^boolean pslIsProtein(const struct psl *psl)$/;"	f
pslLabelColumns	lib/psl.c	/^static void pslLabelColumns(FILE *f)$/;"	f	file:
pslListToGgMrnaAliList	hg/lib/ggMrnaAli.c	/^struct ggMrnaAli *pslListToGgMrnaAliList(struct psl *pslList, char *chrom, unsigned int chromStart, $/;"	f
pslLoad	lib/psl.c	/^struct psl *pslLoad(char **row)$/;"	f
pslLoadAll	lib/psl.c	/^struct psl *pslLoadAll(char *fileName)$/;"	f
pslLoadLm	lib/psl.c	/^struct psl *pslLoadLm(char **row, struct lm *lm)$/;"	f
pslLoader	hg/lib/customFactory.c	/^static struct customTrack *pslLoader(struct customFactory *fac,$/;"	f	file:
pslNAToProt	lib/pslTransMap.c	/^static void pslNAToProt(struct psl *psl)$/;"	f	file:
pslNew	lib/psl.c	/^struct psl* pslNew(char *qName, unsigned qSize, int qStart, int qEnd,$/;"	f
pslNext	lib/psl.c	/^struct psl *pslNext(struct lineFile *lf)$/;"	f
pslOrientation	lib/psl.c	/^int pslOrientation(struct psl *psl)$/;"	f
pslOut	jkOwnLib/gfOut.c	/^static void pslOut(char *chromName, int chromSize, int chromOffset, struct ffAli *ali, $/;"	f	file:
pslOutFormat	lib/psl.c	/^void pslOutFormat(struct psl *el, FILE *f, char sep, char lastSep) $/;"	f
pslOutput	lib/psl.c	/^void pslOutput(struct psl *el, FILE *f, char sep, char lastSep) $/;"	f
pslOutputShort	lib/psl.c	/^void pslOutputShort(struct psl *el, FILE *f, char sep, char lastSep) $/;"	f
pslOver	hg/lib/liftOver.c	/^static void pslOver(struct lineFile *lf, struct hash *chainHash, $/;"	f	file:
pslProtToNA	lib/pslTransMap.c	/^static void pslProtToNA(struct psl *psl)$/;"	f	file:
pslQEnd	inc/psl.h	/^INLINE unsigned pslQEnd(struct psl *psl, int blkIdx)$/;"	f
pslQStrand	inc/psl.h	205;"	d
pslQuery	inc/pslTbl.h	/^struct pslQuery$/;"	s
pslQueryAligned	lib/psl.c	/^float pslQueryAligned(struct psl *psl)$/;"	f
pslQueryGet	lib/pslTbl.c	/^static struct pslQuery *pslQueryGet(struct pslTbl *pslTbl,$/;"	f	file:
pslRangeTreeOverlap	lib/psl.c	/^int pslRangeTreeOverlap(struct psl *psl, struct rbTree *rangeTree)$/;"	f
pslRc	lib/psl.c	/^void pslRc(struct psl *psl)$/;"	f
pslReader	hg/lib/pslReader.c	/^struct pslReader$/;"	s	file:
pslReaderAll	hg/lib/pslReader.c	/^struct psl *pslReaderAll(struct pslReader* pr)$/;"	f
pslReaderChromQuery	hg/lib/pslReader.c	/^struct pslReader *pslReaderChromQuery(struct sqlConnection* conn,$/;"	f
pslReaderFile	hg/lib/pslReader.c	/^struct pslReader *pslReaderFile(char* pslFile, char* chrom)$/;"	f
pslReaderFree	hg/lib/pslReader.c	/^void pslReaderFree(struct pslReader** prPtr)$/;"	f
pslReaderLoadFile	hg/lib/pslReader.c	/^struct psl *pslReaderLoadFile(char* pslFile, char* chrom)$/;"	f
pslReaderLoadQuery	hg/lib/pslReader.c	/^struct psl *pslReaderLoadQuery(struct sqlConnection* conn,$/;"	f
pslReaderLoadRangeQuery	hg/lib/pslReader.c	/^struct psl *pslReaderLoadRangeQuery(struct sqlConnection* conn,$/;"	f
pslReaderNext	hg/lib/pslReader.c	/^struct psl *pslReaderNext(struct pslReader* pr)$/;"	f
pslReaderQuery	hg/lib/pslReader.c	/^struct pslReader *pslReaderQuery(struct sqlConnection* conn,$/;"	f
pslReaderRangeQuery	hg/lib/pslReader.c	/^struct pslReader *pslReaderRangeQuery(struct sqlConnection* conn,$/;"	f
pslRecalcBounds	lib/psl.c	/^static void pslRecalcBounds(struct psl *psl)$/;"	f	file:
pslRecognizer	hg/lib/customFactory.c	/^static boolean pslRecognizer(struct customFactory *fac,$/;"	f	file:
pslScore	lib/psl.c	/^int pslScore(const struct psl *psl)$/;"	f
pslShowAlignment	lib/pslShow.c	/^int pslShowAlignment(struct psl *psl, boolean isProt,$/;"	f
pslShowAlignmentStranded	lib/pslShow.c	/^static void pslShowAlignmentStranded(struct psl *psl, boolean isProt,$/;"	f	file:
pslShowAlignmentStranded2	lib/pslGenoShow.c	/^static void pslShowAlignmentStranded2(struct psl *psl, boolean isProt,$/;"	f	file:
pslSwap	lib/psl.c	/^void pslSwap(struct psl *psl, boolean noRc)$/;"	f
pslTEnd	inc/psl.h	/^INLINE unsigned pslTEnd(struct psl *psl, int blkIdx)$/;"	f
pslTStrand	inc/psl.h	206;"	d
pslTabOut	inc/psl.h	95;"	d
pslTable	hg/inc/fosEndPairs.h	/^    char *pslTable;	\/* Table which contains corresponding PSL records for linked features *\/$/;"	m	struct:fosEndPairs
pslTable	hg/inc/lfs.h	/^    char *pslTable;	\/* Table which contains corresponding PSL records for linked features *\/$/;"	m	struct:lfs
pslTable	hg/inc/plasEndPairs.h	/^    char *pslTable;	\/* Table which contains corresponding PSL records for linked features *\/$/;"	m	struct:plasEndPairs
pslTable	hg/inc/targetDb.h	/^    char *pslTable;	\/* PSL table in db that maps target coords to db coords *\/$/;"	m	struct:targetDb
pslTailSizes	lib/psl.c	/^void pslTailSizes(struct psl *psl, int *retStartTail, int *retEndTail)$/;"	f
pslTargetOffset	lib/psl.c	/^void pslTargetOffset(struct psl *psl, int offset)$/;"	f
pslTbl	inc/pslTbl.h	/^struct pslTbl$/;"	s
pslTblFree	lib/pslTbl.c	/^void pslTblFree(struct pslTbl **pslTblPtr)$/;"	f
pslTblFreeList	lib/pslTbl.c	/^void pslTblFreeList(struct pslTbl **pslTblList)$/;"	f
pslTblNew	lib/pslTbl.c	/^struct pslTbl *pslTblNew(char *pslFile, char *setName)$/;"	f
pslToExons	hg/lib/genePred.c	/^static void pslToExons(struct psl *psl, struct genePred *gene,$/;"	f	file:
pslToFakeFfAli	lib/psl.c	/^struct ffAli *pslToFakeFfAli(struct psl *psl, DNA *needle, DNA *haystack)$/;"	f
pslToFfAli	lib/psl.c	/^struct ffAli *pslToFfAli(struct psl *psl, struct dnaSeq *query, struct dnaSeq *target,$/;"	f
pslToGgMrnaAli	hg/lib/ggMrnaAli.c	/^struct ggMrnaAli *pslToGgMrnaAli(struct psl *psl, char *chrom, unsigned int chromStart,$/;"	f
pslTransMap	lib/pslTransMap.c	/^struct psl* pslTransMap(unsigned opts, struct psl *inPsl, struct psl *mapPsl)$/;"	f
pslTransMapKeepTrans	inc/pslTransMap.h	/^    pslTransMapKeepTrans  = 0x01   \/* keep translated alignment strand *\/$/;"	e	enum:pslTransMapOpts
pslTransMapNoOpts	inc/pslTransMap.h	/^    pslTransMapNoOpts     = 0x00,  \/* no options *\/$/;"	e	enum:pslTransMapOpts
pslTransMapOpts	inc/pslTransMap.h	/^enum pslTransMapOpts$/;"	g
pslTrimToQueryRange	lib/psl.c	/^struct psl *pslTrimToQueryRange(struct psl *oldPsl, int qMin, int qMax)$/;"	f
pslTrimToTargetRange	lib/psl.c	/^struct psl *pslTrimToTargetRange(struct psl *oldPsl, int tMin, int tMax)$/;"	f
pslWQueryID	hg/inc/pslWQueryID.h	/^struct pslWQueryID$/;"	s
pslWQueryIDCommaIn	hg/lib/pslWQueryID.c	/^struct pslWQueryID *pslWQueryIDCommaIn(char **pS, struct pslWQueryID *ret)$/;"	f
pslWQueryIDCommaOut	hg/inc/pslWQueryID.h	72;"	d
pslWQueryIDFree	hg/lib/pslWQueryID.c	/^void pslWQueryIDFree(struct pslWQueryID **pEl)$/;"	f
pslWQueryIDFreeList	hg/lib/pslWQueryID.c	/^void pslWQueryIDFreeList(struct pslWQueryID **pList)$/;"	f
pslWQueryIDLoad	hg/lib/pslWQueryID.c	/^struct pslWQueryID *pslWQueryIDLoad(char **row)$/;"	f
pslWQueryIDLoadAll	hg/lib/pslWQueryID.c	/^struct pslWQueryID *pslWQueryIDLoadAll(char *fileName) $/;"	f
pslWQueryIDLoadAllByChar	hg/lib/pslWQueryID.c	/^struct pslWQueryID *pslWQueryIDLoadAllByChar(char *fileName, char chopper) $/;"	f
pslWQueryIDLoadAllByTab	hg/inc/pslWQueryID.h	50;"	d
pslWQueryIDOutput	hg/lib/pslWQueryID.c	/^void pslWQueryIDOutput(struct pslWQueryID *el, FILE *f, char sep, char lastSep) $/;"	f
pslWQueryIDTabOut	hg/inc/pslWQueryID.h	69;"	d
pslWScore	hg/inc/pslWScore.h	/^struct pslWScore$/;"	s
pslWScoreCommaIn	hg/lib/pslWScore.c	/^struct pslWScore *pslWScoreCommaIn(char **pS, struct pslWScore *ret)$/;"	f
pslWScoreCommaOut	hg/inc/pslWScore.h	62;"	d
pslWScoreFree	hg/lib/pslWScore.c	/^void pslWScoreFree(struct pslWScore **pEl)$/;"	f
pslWScoreFreeList	hg/lib/pslWScore.c	/^void pslWScoreFreeList(struct pslWScore **pList)$/;"	f
pslWScoreLoad	hg/lib/pslWScore.c	/^struct pslWScore *pslWScoreLoad(char **row)$/;"	f
pslWScoreLoadAll	hg/lib/pslWScore.c	/^struct pslWScore *pslWScoreLoadAll(char *fileName) $/;"	f
pslWScoreOutput	hg/lib/pslWScore.c	/^void pslWScoreOutput(struct pslWScore *el, FILE *f, char sep, char lastSep) $/;"	f
pslWScoreTabOut	hg/inc/pslWScore.h	59;"	d
pslWeightedIntronOrientation	lib/psl.c	/^int pslWeightedIntronOrientation(struct psl *psl, struct dnaSeq *genoSeq, int offset)$/;"	f
pslWriteAll	lib/psl.c	/^void pslWriteAll(struct psl *pslList, char *fileName, boolean writeHeader)$/;"	f
pslWriteHead	lib/psl.c	/^void pslWriteHead(FILE *f)$/;"	f
psls	inc/pslTbl.h	/^    struct psl *psls;     \/* alignments *\/$/;"	m	struct:pslQuery	typeref:struct:pslQuery::psl
pslxData	jkOwnLib/gfOut.c	/^struct pslxData$/;"	s	file:
pslxFileOpen	lib/psl.c	/^void pslxFileOpen(char *fileName, enum gfType *retQueryType, enum gfType *retTargetType, struct lineFile **retLf)$/;"	f
pslxFileOpenWithMeta	lib/psl.c	/^void pslxFileOpenWithMeta(char *fileName, enum gfType *retQueryType, enum gfType *retTargetType, struct lineFile **retLf, FILE *f)$/;"	f
pslxFileOpenWithMetaConfig	lib/psl.c	/^static void pslxFileOpenWithMetaConfig(char *fileName, bool isMetaUnique, enum gfType *retQueryType, enum gfType *retTargetType, struct lineFile **retLf, FILE *f)$/;"	f	file:
pslxFileOpenWithUniqueMeta	lib/psl.c	/^void pslxFileOpenWithUniqueMeta(char *fileName, enum gfType *retQueryType, enum gfType *retTargetType, struct lineFile **retLf, FILE *f)$/;"	f
pslxLoad	lib/psl.c	/^struct psl *pslxLoad(char **row)$/;"	f
pslxLoadLm	lib/psl.c	/^struct psl *pslxLoadLm(char **row, struct lm *lm)$/;"	f
pslxWriteHead	lib/psl.c	/^void pslxWriteHead(FILE *f, enum gfType qType, enum gfType tType)$/;"	f
psrId	hg/inc/affyAllExonProbe.h	/^    unsigned psrId;	\/* ??? *\/$/;"	m	struct:affyAllExonProbe
ptArrayIx	lib/common.c	/^int ptArrayIx(void *pt, void *array, int arraySize)$/;"	f
ptCount	inc/gfxPoly.h	/^    int ptCount;		\/* Number of points. *\/$/;"	m	struct:gfxPoly
ptCount	inc/psPoly.h	/^    int ptCount;		\/* Number of points. *\/$/;"	m	struct:psPoly
ptHeight	inc/psGfx.h	/^    double ptWidth, ptHeight;     \/* Size of image in points (1\/72 of an inch) *\/$/;"	m	struct:psGfx
ptList	inc/gfxPoly.h	/^    struct gfxPoint *ptList;	\/* First point in list, which is circular. *\/$/;"	m	struct:gfxPoly	typeref:struct:gfxPoly::gfxPoint
ptList	inc/psPoly.h	/^    struct psPoint *ptList;	\/* First point in list, which is circular. *\/$/;"	m	struct:psPoly	typeref:struct:psPoly::psPoint
ptToInt	lib/obscure.c	/^int ptToInt(void *pt)$/;"	f
ptToSizet	lib/obscure.c	/^size_t ptToSizet(void *pt)$/;"	f
ptWidth	inc/psGfx.h	/^    double ptWidth, ptHeight;     \/* Size of image in points (1\/72 of an inch) *\/$/;"	m	struct:psGfx
pthreadCondDestroy	lib/pthreadWrap.c	/^void pthreadCondDestroy(pthread_cond_t *cond)$/;"	f
pthreadCondInit	lib/pthreadWrap.c	/^void pthreadCondInit(pthread_cond_t *cond)$/;"	f
pthreadCondSignal	lib/pthreadWrap.c	/^void pthreadCondSignal(pthread_cond_t *cond)$/;"	f
pthreadCondWait	lib/pthreadWrap.c	/^void pthreadCondWait(pthread_cond_t *cond, pthread_mutex_t *mutex)$/;"	f
pthreadCreate	lib/pthreadWrap.c	/^void pthreadCreate(pthread_t *thread, const pthread_attr_t *attr,$/;"	f
pthreadMayCreate	lib/pthreadWrap.c	/^boolean pthreadMayCreate(pthread_t *thread, const pthread_attr_t *attr,$/;"	f
pthreadMutexDestroy	lib/pthreadWrap.c	/^void pthreadMutexDestroy(pthread_mutex_t *mutex)$/;"	f
pthreadMutexInit	lib/pthreadWrap.c	/^void pthreadMutexInit(pthread_mutex_t *mutex)$/;"	f
pthreadMutexLock	lib/pthreadWrap.c	/^void pthreadMutexLock(pthread_mutex_t *mutex)$/;"	f
pthreadMutexUnlock	lib/pthreadWrap.c	/^void pthreadMutexUnlock(pthread_mutex_t *mutex)$/;"	f
ptrToLL	inc/common.h	169;"	d
pubDate	hg/inc/gwasCatalog.h	/^    char *pubDate;	\/* Date of publication *\/$/;"	m	struct:gwasCatalog
pubMed	hg/inc/hgnc.h	/^    char *pubMed;	\/* Pubmed IDs *\/$/;"	m	struct:hgnc
pubMedID	hg/inc/gwasCatalog.h	/^    unsigned pubMedID;	\/* PubMed ID of publication of the study *\/$/;"	m	struct:gwasCatalog
pubMedId	hg/inc/dgv.h	/^    unsigned pubMedId;	\/* For linking to pubMed abstract of reference *\/$/;"	m	struct:dgv
pushAbortHandler	lib/errabort.c	/^void pushAbortHandler(AbortHandler handler)$/;"	f
pushCarefulMemHandler	lib/memalloc.c	/^void pushCarefulMemHandler(size_t maxAlloc)$/;"	f
pushDebugAbort	lib/errabort.c	/^void pushDebugAbort()$/;"	f
pushMemHandler	lib/memalloc.c	/^struct memHandler *pushMemHandler(struct memHandler *newHandler)$/;"	f
pushPosString	hg/lib/mafGene.c	/^static void pushPosString(struct speciesInfo *si)$/;"	f	file:
pushSilentWarnHandler	lib/errabort.c	/^void pushSilentWarnHandler()$/;"	f
pushVertex	hg/lib/geneGraph.c	/^static void pushVertex(struct ggVertex *v)$/;"	f	file:
pushWarnAbort	lib/errabort.c	/^void pushWarnAbort()$/;"	f
pushWarnHandler	lib/errabort.c	/^void pushWarnHandler(WarnHandler handler)$/;"	f
putBackMB	lib/mime.c	/^static void putBackMB(struct mimeBuf *b)$/;"	f	file:
putaInfo	hg/inc/putaInfo.h	/^struct putaInfo$/;"	s
putaInfoCommaIn	hg/lib/putaInfo.c	/^struct putaInfo *putaInfoCommaIn(char **pS, struct putaInfo *ret)$/;"	f
putaInfoCommaOut	hg/inc/putaInfo.h	96;"	d
putaInfoFree	hg/lib/putaInfo.c	/^void putaInfoFree(struct putaInfo **pEl)$/;"	f
putaInfoFreeList	hg/lib/putaInfo.c	/^void putaInfoFreeList(struct putaInfo **pList)$/;"	f
putaInfoLoad	hg/lib/putaInfo.c	/^struct putaInfo *putaInfoLoad(char **row)$/;"	f
putaInfoLoadAll	hg/lib/putaInfo.c	/^struct putaInfo *putaInfoLoadAll(char *fileName) $/;"	f
putaInfoLoadAllByChar	hg/lib/putaInfo.c	/^struct putaInfo *putaInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
putaInfoLoadAllByTab	hg/inc/putaInfo.h	49;"	d
putaInfoLoadByQuery	hg/lib/putaInfo.c	/^struct putaInfo *putaInfoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
putaInfoOutput	hg/lib/putaInfo.c	/^void putaInfoOutput(struct putaInfo *el, FILE *f, char sep, char lastSep) $/;"	f
putaInfoSaveToDb	hg/lib/putaInfo.c	/^void putaInfoSaveToDb(struct sqlConnection *conn, struct putaInfo *el, char *tableName, int updateSize)$/;"	f
putaInfoSaveToDbEscaped	hg/lib/putaInfo.c	/^void putaInfoSaveToDbEscaped(struct sqlConnection *conn, struct putaInfo *el, char *tableName, int updateSize)$/;"	f
putaInfoTabOut	hg/inc/putaInfo.h	93;"	d
pval	hg/inc/affyAtlas.h	/^    float pval;	\/* p-value *\/$/;"	m	struct:affyAtlas
pwarn	lib/pthreadWrap.c	/^static void pwarn(char *function, int err)$/;"	f	file:
pxmax	lib/mgPolygon.c	/^static int pxmin, pxmax, pymin, pymax;	\/* Bounds of polygon. *\/$/;"	v	file:
pxmin	lib/mgPolygon.c	/^static int pxmin, pxmax, pymin, pymax;	\/* Bounds of polygon. *\/$/;"	v	file:
pymax	lib/mgPolygon.c	/^static int pxmin, pxmax, pymin, pymax;	\/* Bounds of polygon. *\/$/;"	v	file:
pymin	lib/mgPolygon.c	/^static int pxmin, pxmax, pymin, pymax;	\/* Bounds of polygon. *\/$/;"	v	file:
qAcc	inc/maDbRep.h	/^    char qAcc[13];	\/* GenBank Accession for mRNA sequence *\/$/;"	m	struct:mrnaAli
qBaseInsert	hg/inc/pslWQueryID.h	/^    unsigned qBaseInsert;	\/* Number of bases inserted in query *\/$/;"	m	struct:pslWQueryID
qBaseInsert	hg/inc/pslWScore.h	/^    int qBaseInsert;	\/* Number of bases inserted in query *\/$/;"	m	struct:pslWScore
qBaseInsert	inc/psl.h	/^    int qBaseInsert;	\/* Number of bases inserted in query *\/$/;"	m	struct:psl
qBaseInsert	inc/xAli.h	/^    int qBaseInsert;	\/* Number of bases inserted in query *\/$/;"	m	struct:xAli
qBases	hg/inc/putaInfo.h	/^    unsigned qBases[4];	\/* stamp (aligend) (cds) bases *\/$/;"	m	struct:putaInfo
qBlockStarts	inc/maDbRep.h	/^    unsigned *qBlockStarts;	\/* Start of each block in mRNA *\/$/;"	m	struct:mrnaAli
qDecode	lib/udc.c	/^static void qDecode(const char *input, char *buf, size_t size)$/;"	f	file:
qDim	inc/pairHmm.h	/^    int qDim;		\/* One plus size of query - dimension of matrix. *\/$/;"	m	struct:phmmMatrix
qDup	hg/inc/chainNet.h	/^    int qDup;	   \/* Number of bases that are duplicated. *\/$/;"	m	struct:cnFill
qDup	hg/inc/netAlign.h	/^    int qDup;	\/* Bases with two or more copies in query. -1 for undefined *\/$/;"	m	struct:netAlign
qEncode	lib/udc.c	/^static char *qEncode(char *input)$/;"	f	file:
qEnd	hg/inc/blastTab.h	/^    unsigned qEnd;	\/* End in query (non-inclusive) *\/$/;"	m	struct:blastTab
qEnd	hg/inc/chainView.h	/^    int qStart,qEnd;		  \/* Range covered in query. *\/$/;"	m	struct:chainView
qEnd	hg/inc/ggMrnaAli.h	/^    int qEnd;	\/* End of block in query *\/$/;"	m	struct:ggMrnaBlock
qEnd	hg/inc/ggMrnaAli.h	/^    int qEnd;	\/* end of alignment in query  *\/$/;"	m	struct:ggMrnaAli
qEnd	hg/inc/netAlign.h	/^    unsigned qEnd;	\/* End on query *\/$/;"	m	struct:netAlign
qEnd	hg/inc/pseudoGeneLink.h	/^    unsigned qEnd;	\/* end of cdna alignment *\/$/;"	m	struct:pseudoGeneLink
qEnd	hg/inc/pslWQueryID.h	/^    unsigned qEnd;	\/* Alignment end position in query *\/$/;"	m	struct:pslWQueryID
qEnd	hg/inc/pslWScore.h	/^    unsigned qEnd;	\/* Alignment end position in query *\/$/;"	m	struct:pslWScore
qEnd	hg/inc/retroMrnaInfo.h	/^    unsigned qEnd;	\/* end of cdna alignment col29 *\/$/;"	m	struct:retroMrnaInfo
qEnd	hg/inc/splignAlign.h	/^    int qEnd;	\/* query end *\/$/;"	m	struct:splignAlign
qEnd	hg/inc/ucscRetroInfo.h	/^    unsigned qEnd;	\/* end of cdna alignment col29 *\/$/;"	m	struct:ucscRetroInfo
qEnd	hg/inc/wabAli.h	/^    unsigned qEnd;	\/* End in query. *\/$/;"	m	struct:wabAli
qEnd	inc/axt.h	/^    int qStart, qEnd;		\/* Half open zero=based coordinates. *\/$/;"	m	struct:axt
qEnd	inc/blastParse.h	/^    int qEnd;                           \/* Query end position. *\/$/;"	m	struct:blastBlock
qEnd	inc/boxClump.h	/^    int qStart, qEnd;		 \/* Expanse of clump in query. *\/$/;"	m	struct:boxClump
qEnd	inc/boxClump.h	/^    int qStart, qEnd;		 \/* Range covered in query. *\/$/;"	m	struct:boxIn
qEnd	inc/chain.h	/^    int qStart,qEnd;		  \/* Range covered in query. *\/$/;"	m	struct:chain
qEnd	inc/chain.h	/^    int qStart,qEnd;		\/* Range covered in query. *\/$/;"	m	struct:cBlock
qEnd	inc/crudeali.h	/^    int qStart, qEnd;$/;"	m	struct:crudeAli
qEnd	inc/ens.h	/^    int qStart, qEnd;              \/* Query (cDNA, protein, etc.) sequence position. *\/$/;"	m	struct:ensFeature
qEnd	inc/genoFind.h	/^    bits32 qStart, qEnd;	\/* Position in query. *\/$/;"	m	struct:gfClump
qEnd	inc/hgap.h	/^    int qStart, qEnd;     \/* Position in query sequence. *\/$/;"	m	struct:hgAliHit
qEnd	inc/hgap.h	/^    int qStart, qEnd;     \/* Position in query sequence. *\/$/;"	m	struct:hgAlignment
qEnd	inc/hgap.h	/^    int qStart, qEnd;     \/* Position in query sequence. *\/$/;"	m	struct:hgBoundedHit
qEnd	inc/hmmPfamParse.h	/^    int qStart, qEnd;	\/* Where this is in query sequence. *\/$/;"	m	struct:hpfDomain
qEnd	inc/maDbRep.h	/^    unsigned qEnd;	\/* End in mRNA sequence *\/$/;"	m	struct:mrnaAli
qEnd	inc/psl.h	/^    int qEnd;	\/* Alignment end position in query *\/$/;"	m	struct:psl
qEnd	inc/repMask.h	/^    int qEnd;	\/* End query position. *\/$/;"	m	struct:repeatMaskOut
qEnd	inc/xAli.h	/^    unsigned qEnd;	\/* Alignment end position in query *\/$/;"	m	struct:xAli
qEnd	inc/xa.h	/^    int qStart, qEnd;$/;"	m	struct:xaAli
qEnd	jkOwnLib/xenbig.c	/^    int qStart, qEnd;$/;"	m	struct:cluster	file:
qEnd	jkOwnLib/xenbig.c	/^    int qStart, qEnd;$/;"	m	struct:contig	file:
qEnd	lib/pslTransMap.c	/^    int qEnd;            \/* Query end position. *\/$/;"	m	struct:block	file:
qEndOffset	jkOwnLib/xenbig.c	/^    int qOffset, qEndOffset;$/;"	m	struct:cluster	file:
qEndOffset	jkOwnLib/xenbig.c	/^    int qOffset, qEndOffset;$/;"	m	struct:contig	file:
qEscaped	lib/udc.c	/^static boolean qEscaped(char c)$/;"	f	file:
qExons	hg/inc/putaInfo.h	/^    unsigned qExons[4];	\/* stamp (mapped) (cds) exons *\/$/;"	m	struct:putaInfo
qFar	hg/inc/chainNet.h	/^    int qFar;      \/* How far away is parent in query if syntenic or inverted. *\/$/;"	m	struct:cnFill
qFar	hg/inc/netAlign.h	/^    int qFar;	\/* Distance from parent gap on query side. -1 for undefined *\/$/;"	m	struct:netAlign
qFrame	inc/blastParse.h	/^    BYTE qFrame;                        \/* Frames for tblastn, +\/- 1, 2, 3, or *\/$/;"	m	struct:blastBlock
qHead	inc/annoGrator.h	/^    struct annoRow *qHead;		\/\/ head of FIFO queue of rows from internal source$/;"	m	struct:annoGrator	typeref:struct:annoGrator::annoRow
qId	inc/maDbRep.h	/^    unsigned qId;	\/* Database ID of mRNA sequence *\/$/;"	m	struct:mrnaAli
qIsProt	inc/genoFind.h	/^    boolean qIsProt;		\/* Query is peptide. *\/$/;"	m	struct:gfOutput
qLastPos	lib/gapCalc.c	/^    int qLastPos;	\/* Maximum position we have data on in q. *\/$/;"	m	struct:gapCalc	file:
qLastPosVal	lib/gapCalc.c	/^    double qLastPosVal;	\/* Value at max pos. *\/$/;"	m	struct:gapCalc	file:
qLastSlope	lib/gapCalc.c	/^    double qLastSlope;	\/* What to add for each base after last. *\/$/;"	m	struct:gapCalc	file:
qLeft	inc/repMask.h	/^    char *qLeft;	\/* Bases left in query. *\/$/;"	m	struct:repeatMaskOut
qLong	lib/gapCalc.c	/^    double *qLong; \/* Values to interpolate between for larger gaps in q. *\/$/;"	m	struct:gapCalc	file:
qN	hg/inc/chainNet.h	/^    int qN;	   \/* Count of N's in query chromosome or -1 *\/$/;"	m	struct:cnFill
qN	hg/inc/netAlign.h	/^    int qN;	\/* Unsequenced bases on query. -1 for undefined *\/$/;"	m	struct:netAlign
qName	hg/inc/chainNet.h	/^    char *qName;	   \/* Other chromosome (not allocated here) *\/$/;"	m	struct:cnFill
qName	hg/inc/chainView.h	/^    char *qName;		  \/* query name, allocated here. *\/$/;"	m	struct:chainView
qName	hg/inc/codeBlastScore.h	/^    char *qName;	\/* Name of item *\/$/;"	m	struct:codeBlastScore
qName	hg/inc/ggMrnaAli.h	/^    char *qName;	\/* name (accession) of mRNA  *\/$/;"	m	struct:ggMrnaAli
qName	hg/inc/netAlign.h	/^    char *qName;	\/* Query chromosome *\/$/;"	m	struct:netAlign
qName	hg/inc/pslWQueryID.h	/^    char *qName;	\/* Query sequence name *\/$/;"	m	struct:pslWQueryID
qName	hg/inc/pslWScore.h	/^    char *qName;	\/* Query sequence name *\/$/;"	m	struct:pslWScore
qName	hg/inc/samAlignment.h	/^    char *qName;	\/* Query template name - name of a read *\/$/;"	m	struct:samAlignment
qName	hg/inc/sargassoSeaXra.h	/^    char *qName;	\/* Name of item *\/$/;"	m	struct:sargassoSeaXra
qName	inc/axt.h	/^    char *qName;		\/* Name of query sequence. *\/$/;"	m	struct:axt
qName	inc/chain.h	/^    char *qName;		  \/* query name, allocated here. *\/$/;"	m	struct:chain
qName	inc/ens.h	/^    char *qName;                   \/* Query sequence name. *\/$/;"	m	struct:ensFeature
qName	inc/psl.h	/^    char *qName;	\/* Query sequence name *\/$/;"	m	struct:psl
qName	inc/pslTbl.h	/^    char *qName;          \/* qName, memory not owned here *\/$/;"	m	struct:pslQuery
qName	inc/repMask.h	/^    char *qName;	\/* Name of query. *\/$/;"	m	struct:repeatMaskOut
qName	inc/xAli.h	/^    char *qName;	\/* Query sequence name *\/$/;"	m	struct:xAli
qNewR	hg/inc/chainNet.h	/^    int qNewR;	   \/* Count of new (lineage specific) repeats in query *\/$/;"	m	struct:cnFill
qNewR	hg/inc/netAlign.h	/^    int qNewR;	\/* Lineage specific repeats on query. -1 for undefined *\/$/;"	m	struct:netAlign
qNumInsert	hg/inc/pslWQueryID.h	/^    unsigned qNumInsert;	\/* Number of inserts in query *\/$/;"	m	struct:pslWQueryID
qNumInsert	hg/inc/pslWScore.h	/^    unsigned qNumInsert;	\/* Number of inserts in query *\/$/;"	m	struct:pslWScore
qNumInsert	inc/psl.h	/^    unsigned qNumInsert;	\/* Number of inserts in query *\/$/;"	m	struct:psl
qNumInsert	inc/xAli.h	/^    unsigned qNumInsert;	\/* Number of inserts in query *\/$/;"	m	struct:xAli
qOffset	jkOwnLib/xenbig.c	/^    int qOffset, qEndOffset;$/;"	m	struct:cluster	file:
qOffset	jkOwnLib/xenbig.c	/^    int qOffset, qEndOffset;$/;"	m	struct:contig	file:
qOldR	hg/inc/chainNet.h	/^    int qOldR;	   \/* Count of ancient repeats (pre-split) in query *\/$/;"	m	struct:cnFill
qOldR	hg/inc/netAlign.h	/^    int qOldR;	\/* Bases of ancient repeats on query. -1 for undefined *\/$/;"	m	struct:netAlign
qOrientation	inc/hgap.h	/^    int qOrientation;	  \/* +1 or -1 query orientation. *\/$/;"	m	struct:hgAliHit
qOrientation	inc/hgap.h	/^    int qOrientation;	  \/* +1 or -1 query orientation. *\/$/;"	m	struct:hgBoundedHit
qOrientation	inc/hgap.h	/^    int qOrientation;     \/* +1 or -1 orientation. *\/$/;"	m	struct:hgAlignment
qOver	hg/inc/chainNet.h	/^    int qOver;     \/* Overlap with parent in query if syntenic or inverted. *\/$/;"	m	struct:cnFill
qOver	hg/inc/netAlign.h	/^    int qOver;	\/* Overlap with parent gap on query side. -1 for undefined *\/$/;"	m	struct:netAlign
qPosCount	lib/gapCalc.c	/^    int qPosCount;	\/* Number of long positions in q. *\/$/;"	m	struct:gapCalc	file:
qR	hg/inc/chainNet.h	/^    int qR;	   \/* Count of repeats in query chromosome or -1 *\/$/;"	m	struct:cnFill
qR	hg/inc/netAlign.h	/^    int qR;	\/* RepeatMasker bases on query. -1 for undefined *\/$/;"	m	struct:netAlign
qSeq	hg/inc/simpleNucDiff.h	/^    char *qSeq;	\/* Sequence in other (query) species *\/$/;"	m	struct:simpleNucDiff
qSeq	inc/supStitch.h	/^    bioSeq *qSeq;        \/* Query sequence (not owned by bundle.) *\/$/;"	m	struct:ssBundle
qSeq	inc/xAli.h	/^    char **qSeq;	\/* Query sequence for each block. *\/$/;"	m	struct:xAli
qSequence	inc/psl.h	/^    char **qSequence;  \/* query sequence for each block *\/$/;"	m	struct:psl
qSize	hg/inc/chainNet.h	/^    int qStart,	qSize;	   \/* Range in query chromosome. *\/$/;"	m	struct:cnFill
qSize	hg/inc/chainView.h	/^    int qSize;			  \/* Overall size of query. *\/$/;"	m	struct:chainView
qSize	hg/inc/pseudoGeneLink.h	/^    unsigned qSize;	\/* aligning bases in pseudogene *\/$/;"	m	struct:pseudoGeneLink
qSize	hg/inc/pslWQueryID.h	/^    unsigned qSize;	\/* Query sequence size *\/$/;"	m	struct:pslWQueryID
qSize	hg/inc/pslWScore.h	/^    unsigned qSize;	\/* Query sequence size *\/$/;"	m	struct:pslWScore
qSize	hg/inc/retroMrnaInfo.h	/^    unsigned qSize;	\/* aligning bases in pseudogene col28 *\/$/;"	m	struct:retroMrnaInfo
qSize	hg/inc/ucscRetroInfo.h	/^    unsigned qSize;	\/* aligning bases in pseudogene col28 *\/$/;"	m	struct:ucscRetroInfo
qSize	inc/axt.h	/^    int qSize;			\/* Size of query. *\/$/;"	m	struct:axtBundle
qSize	inc/chain.h	/^    int qSize;			  \/* Overall size of query. *\/$/;"	m	struct:chain
qSize	inc/psl.h	/^    unsigned qSize;	\/* Query sequence size *\/$/;"	m	struct:psl
qSize	inc/xAli.h	/^    unsigned qSize;	\/* Query sequence size *\/$/;"	m	struct:xAli
qSizes	hg/lib/alignSeqSizes.c	/^    struct hash* qSizes;$/;"	m	struct:alignSeqSizes	typeref:struct:alignSeqSizes::hash	file:
qSlipIx	jkOwnLib/xensmall.c	/^    qSlipIx,$/;"	e	enum:sevenStateIx	file:
qSlipScore	jkOwnLib/xensmall.c	259;"	d	file:
qSlipScore	jkOwnLib/xensmall.c	461;"	d	file:
qSlipScore	lib/axtAffine.c	181;"	d	file:
qSlipScore	lib/axtAffine.c	55;"	d	file:
qSlipState	jkOwnLib/xensmall.c	280;"	d	file:
qSlipState	jkOwnLib/xensmall.c	466;"	d	file:
qSlipState	lib/axtAffine.c	186;"	d	file:
qSlipState	lib/axtAffine.c	76;"	d	file:
qSmall	lib/gapCalc.c	/^    int *qSmall;   \/* Table for small gaps in q; *\/$/;"	m	struct:gapCalc	file:
qStart	hg/inc/blastTab.h	/^    unsigned qStart;	\/* Start in query (0 based) *\/$/;"	m	struct:blastTab
qStart	hg/inc/chainGap.h	/^    unsigned qStart;	\/* start in query *\/$/;"	m	struct:chainGap
qStart	hg/inc/chainLink.h	/^    unsigned qStart;	\/* start in query *\/$/;"	m	struct:chainLink
qStart	hg/inc/chainNet.h	/^    int qStart,	qSize;	   \/* Range in query chromosome. *\/$/;"	m	struct:cnFill
qStart	hg/inc/chainView.h	/^    int qStart,qEnd;		  \/* Range covered in query. *\/$/;"	m	struct:chainView
qStart	hg/inc/ggMrnaAli.h	/^    int qStart;	\/* Start of block in query *\/$/;"	m	struct:ggMrnaBlock
qStart	hg/inc/ggMrnaAli.h	/^    int qStart;	\/* start of alignment in query  *\/$/;"	m	struct:ggMrnaAli
qStart	hg/inc/netAlign.h	/^    unsigned qStart;	\/* Start on query *\/$/;"	m	struct:netAlign
qStart	hg/inc/pslWQueryID.h	/^    unsigned qStart;	\/* Alignment start position in query *\/$/;"	m	struct:pslWQueryID
qStart	hg/inc/pslWScore.h	/^    unsigned qStart;	\/* Alignment start position in query *\/$/;"	m	struct:pslWScore
qStart	hg/inc/splignAlign.h	/^    int qStart;	\/* query start *\/$/;"	m	struct:splignAlign
qStart	hg/inc/wabAli.h	/^    unsigned qStart;	\/* Start in query (other species) *\/$/;"	m	struct:wabAli
qStart	inc/axt.h	/^    int qStart, qEnd;		\/* Half open zero=based coordinates. *\/$/;"	m	struct:axt
qStart	inc/blastParse.h	/^    int qStart;                         \/* Query start position. [0..n) *\/$/;"	m	struct:blastBlock
qStart	inc/boxClump.h	/^    int qStart, qEnd;		 \/* Expanse of clump in query. *\/$/;"	m	struct:boxClump
qStart	inc/boxClump.h	/^    int qStart, qEnd;		 \/* Range covered in query. *\/$/;"	m	struct:boxIn
qStart	inc/chain.h	/^    int qStart,qEnd;		  \/* Range covered in query. *\/$/;"	m	struct:chain
qStart	inc/chain.h	/^    int qStart,qEnd;		\/* Range covered in query. *\/$/;"	m	struct:cBlock
qStart	inc/crudeali.h	/^    int qStart, qEnd;$/;"	m	struct:crudeAli
qStart	inc/ens.h	/^    int qStart, qEnd;              \/* Query (cDNA, protein, etc.) sequence position. *\/$/;"	m	struct:ensFeature
qStart	inc/genoFind.h	/^    bits32 qStart, qEnd;	\/* Position in query. *\/$/;"	m	struct:gfClump
qStart	inc/genoFind.h	/^   bits32 qStart;		\/* Where it hits in query. *\/$/;"	m	struct:gfHit
qStart	inc/hgap.h	/^    int qStart, qEnd;     \/* Position in query sequence. *\/$/;"	m	struct:hgAliHit
qStart	inc/hgap.h	/^    int qStart, qEnd;     \/* Position in query sequence. *\/$/;"	m	struct:hgAlignment
qStart	inc/hgap.h	/^    int qStart, qEnd;     \/* Position in query sequence. *\/$/;"	m	struct:hgBoundedHit
qStart	inc/hmmPfamParse.h	/^    int qStart, qEnd;	\/* Where this is in query sequence. *\/$/;"	m	struct:hpfDomain
qStart	inc/maDbRep.h	/^    unsigned qStart;	\/* Start in mRNA sequence *\/$/;"	m	struct:mrnaAli
qStart	inc/psl.h	/^    int qStart;	\/* Alignment start position in query *\/$/;"	m	struct:psl
qStart	inc/repMask.h	/^    int qStart;	\/* Start query position. *\/$/;"	m	struct:repeatMaskOut
qStart	inc/xAli.h	/^    unsigned qStart;	\/* Alignment start position in query *\/$/;"	m	struct:xAli
qStart	inc/xa.h	/^    int qStart, qEnd;$/;"	m	struct:xaAli
qStart	jkOwnLib/xenbig.c	/^    int qStart, qEnd;$/;"	m	struct:cluster	file:
qStart	jkOwnLib/xenbig.c	/^    int qStart, qEnd;$/;"	m	struct:contig	file:
qStart	lib/pslTransMap.c	/^    int qStart;          \/* Query start position. *\/$/;"	m	struct:block	file:
qStarts	hg/inc/pslWQueryID.h	/^    unsigned *qStarts;	\/* Start of each block in query. *\/$/;"	m	struct:pslWQueryID
qStarts	hg/inc/pslWScore.h	/^    unsigned *qStarts;	\/* Start of each block in query. *\/$/;"	m	struct:pslWScore
qStarts	inc/psl.h	/^    unsigned *qStarts;	\/* Start of each block in query. *\/$/;"	m	struct:psl
qStarts	inc/xAli.h	/^    unsigned *qStarts;	\/* Start of each block in query. *\/$/;"	m	struct:xAli
qStrand	hg/inc/chainNet.h	/^    char qStrand;	   \/* Orientation + or - in other chrom. *\/$/;"	m	struct:cnFill
qStrand	hg/inc/chainView.h	/^    char qStrand;		  \/* Query strand. *\/$/;"	m	struct:chainView
qStrand	inc/axt.h	/^    char qStrand;		\/* Is this forward or reverse strand + or - *\/$/;"	m	struct:axt
qStrand	inc/blastParse.h	/^    BYTE qStrand;                       \/* Query strand (+1 or -1) *\/$/;"	m	struct:blastBlock
qStrand	inc/chain.h	/^    char qStrand;		  \/* Query strand. *\/$/;"	m	struct:chain
qStrand	inc/xa.h	/^    char qStrand;$/;"	m	struct:xaAli
qStrand	jkOwnLib/xenbig.c	/^    char qStrand;$/;"	m	struct:cluster	file:
qStrand	jkOwnLib/xenbig.c	/^    char qStrand;$/;"	m	struct:contig	file:
qSym	hg/inc/wabAli.h	/^    char *qSym;	\/* Query bases plus '-'s. *\/$/;"	m	struct:wabAli
qSym	inc/axt.h	/^    char *qSym, *tSym;          \/* Alignments. *\/$/;"	m	struct:axt
qSym	inc/blastParse.h	/^    char *qSym;                         \/* Query letters (including '-') *\/$/;"	m	struct:blastBlock
qSym	inc/xa.h	/^    char *qSym, *tSym, *hSym;$/;"	m	struct:xaAli
qSym	jkOwnLib/xenbig.c	/^    char *qSym;     \/* Query symbols (nucleotides and insert char) *\/$/;"	m	struct:contig	file:
qTail	inc/annoGrator.h	/^    struct annoRow *qTail;		\/\/ head of FIFO queue of rows from internal source$/;"	m	struct:annoGrator	typeref:struct:annoGrator::annoRow
qTotalSize	inc/maDbRep.h	/^    unsigned qTotalSize;	\/* Total bases (not just aligned) in mRNA *\/$/;"	m	struct:mrnaAli
qTrf	hg/inc/chainNet.h	/^    int qTrf;	   \/* Count of simple repeats, period 12 or less. *\/$/;"	m	struct:cnFill
qTrf	hg/inc/netAlign.h	/^    int qTrf;	\/* Bases of Tandam repeats on query. -1 for undefined *\/$/;"	m	struct:netAlign
qa	hg/inc/qaSeq.h	/^    UBYTE *qa;            \/* Quality scores in -log10 error rate *\/$/;"	m	struct:qaSeq
qaCountBetween	lib/qa.c	/^int qaCountBetween(char *s, char *startPattern, char *endPattern, $/;"	f
qaFaRead	hg/lib/qaSeq.c	/^static struct qaSeq *qaFaRead(char *qaName, char *faName, boolean mustReadQa)$/;"	f	file:
qaFake	hg/lib/qaSeq.c	/^void qaFake(struct qaSeq *qa, int badTailSize, int poorTailSize)$/;"	f
qaFastReadNext	hg/lib/qaSeq.c	/^boolean qaFastReadNext(struct lineFile *lf, UBYTE **retQ, int *retSize, char **retName)$/;"	f
qaIsGsFake	hg/lib/qaSeq.c	/^boolean qaIsGsFake(struct qaSeq *qa)$/;"	f
qaMakeConstant	hg/lib/qaSeq.c	/^struct qaSeq *qaMakeConstant(char *name, int val, int size)$/;"	f
qaMakeFake	hg/lib/qaSeq.c	/^void qaMakeFake(struct qaSeq *qa)$/;"	f
qaMustReadBoth	hg/lib/qaSeq.c	/^struct qaSeq *qaMustReadBoth(char *qaName, char *faName)$/;"	f
qaPageFromForm	lib/qa.c	/^struct qaStatus *qaPageFromForm(struct htmlPage *origPage, struct htmlForm *form, $/;"	f
qaPageGet	lib/qa.c	/^struct qaStatus *qaPageGet(char *url, struct htmlPage **retPage)$/;"	f
qaRead	hg/lib/qaSeq.c	/^struct qaSeq *qaRead(char *qaName)$/;"	f
qaReadBoth	hg/lib/qaSeq.c	/^struct qaSeq *qaReadBoth(char *qaName, char *faName)$/;"	f
qaReadNext	hg/lib/qaSeq.c	/^struct qaSeq *qaReadNext(struct lineFile *lf)$/;"	f
qaScanForErrorMessage	lib/qa.c	/^char *qaScanForErrorMessage(char *text)$/;"	f
qaSeq	hg/inc/qaSeq.h	/^struct qaSeq$/;"	s
qaSeqFree	hg/lib/qaSeq.c	/^void qaSeqFree(struct qaSeq **pQa)$/;"	f
qaSeqFreeList	hg/lib/qaSeq.c	/^void qaSeqFreeList(struct qaSeq **pList)$/;"	f
qaStatistics	inc/qa.h	/^struct qaStatistics$/;"	s
qaStatisticsAdd	lib/qa.c	/^void qaStatisticsAdd(struct qaStatistics *stats, struct qaStatus *qs)$/;"	f
qaStatisticsReport	lib/qa.c	/^void qaStatisticsReport(struct qaStatistics *stats, char *label, FILE *f)$/;"	f
qaStatus	inc/qa.h	/^struct qaStatus$/;"	s
qaStatusOnPage	lib/qa.c	/^static struct qaStatus *qaStatusOnPage(struct errCatch *errCatch, $/;"	f	file:
qaStatusReportOne	lib/qa.c	/^void qaStatusReportOne(FILE *f, struct qaStatus *qs, char *format, ...)$/;"	f
qaStatusSoftError	lib/qa.c	/^void qaStatusSoftError(struct qaStatus *qs, char *format, ...)$/;"	f
qaStringBetween	lib/qa.c	/^char *qaStringBetween(char *text, char *startPattern, char *endPattern)$/;"	f
qaWriteNext	hg/lib/qaSeq.c	/^void qaWriteNext(FILE *f, struct qaSeq *qa)$/;"	f
qacOpenVerify	hg/lib/qaSeq.c	/^FILE *qacOpenVerify(char *fileName, boolean *retIsSwapped)$/;"	f
qacPathFromFaPath	hg/lib/qaSeq.c	/^char *qacPathFromFaPath(char *faName)$/;"	f
qacReadNext	hg/lib/qaSeq.c	/^struct qaSeq *qacReadNext(FILE *f, boolean isSwapped)$/;"	f
qacSig	inc/sig.h	53;"	d
qacWriteHead	hg/lib/qaSeq.c	/^void qacWriteHead(FILE *f)$/;"	f
qacWriteNext	hg/lib/qaSeq.c	/^void qacWriteNext(FILE *f, struct qaSeq *qa)$/;"	f
qual	hg/inc/samAlignment.h	/^    char *qual;	\/* ASCII of Phred-scaled base QUALity+33.  Just '*' if no quality scores *\/$/;"	m	struct:samAlignment
qual	inc/vcf.h	/^    char *qual;			\/\/ . or Phred-scaled score, i.e. -10log_10 P(call in ALT is wrong)$/;"	m	struct:vcfRecord
qualChr	hg/inc/bgiSnp.h	/^    unsigned qualChr;	\/* Quality score in reference assembly *\/$/;"	m	struct:bgiSnp
qualReads	hg/inc/bgiSnp.h	/^    unsigned qualReads;	\/* Quality score in alternate allele read *\/$/;"	m	struct:bgiSnp
quality	inc/maf.h	/^    char *quality;  \/* The quality data (same length as text, or NULL). *\/$/;"	m	struct:mafComp
queries	inc/blastParse.h	/^    struct blastQuery *queries;         \/* List of queries. *\/$/;"	m	struct:blastFile	typeref:struct:blastFile::blastQuery
query	hg/inc/blastTab.h	/^    char *query;	\/* Name of query sequence *\/$/;"	m	struct:blastTab
query	hg/inc/geneSimilarities.h	/^    struct genePred *query;        \/\/ the query genePred$/;"	m	struct:geneSimilarities	typeref:struct:geneSimilarities::genePred
query	hg/inc/hgFind.h	/^    char *query;		  \/* Query string that led to positions. *\/$/;"	m	struct:hgPositions
query	hg/inc/hgFindSpec.h	/^    char *query;	\/* sprintf format string for SQL query on a given table and value. *\/$/;"	m	struct:hgFindSpec
query	hg/inc/rankProp.h	/^    char *query;	\/* known genes id of query protein *\/$/;"	m	struct:rankProp
query	hg/inc/snpExceptions.h	/^    char *query;	\/* SQL string to retrieve bad records *\/$/;"	m	struct:snpExceptions
query	hg/inc/splignAlign.h	/^    char *query;	\/* query name *\/$/;"	m	struct:splignAlign
query	hg/inc/wabAli.h	/^    char *query;	\/* Foreign sequence name. *\/$/;"	m	struct:wabAli
query	hg/lib/chromGraphFactory.c	/^    char *query; 	\/* Query (with %s for item, %s for table)  *\/$/;"	m	struct:markerTypeRecognizer	file:
query	inc/annoFormatter.h	/^    struct annoGratorQuery *query;$/;"	m	struct:annoFormatter	typeref:struct:annoFormatter::annoGratorQuery
query	inc/annoStreamer.h	/^    struct annoGratorQuery *query;	\/\/ The query object that owns this streamer.$/;"	m	struct:annoStreamer	typeref:struct:annoStreamer::annoGratorQuery
query	inc/blastParse.h	/^    char *query;                        \/* Name of query sequence. *\/$/;"	m	struct:blastQuery
query	inc/blastParse.h	/^    struct blastQuery *query;           \/* Query associated with this alignment (not owned here). *\/$/;"	m	struct:blastGappedAli	typeref:struct:blastGappedAli::blastQuery
query	inc/chainConnect.h	/^    struct dnaSeq *query;$/;"	m	struct:chainConnect	typeref:struct:chainConnect::dnaSeq
query	inc/hgap.h	/^    char *query;	  \/* Name of query seq. (Not allocated here.) *\/$/;"	m	struct:hgAliHit
query	inc/hgap.h	/^    char *query;	  \/* Name of query seq. (Not allocated here.) *\/$/;"	m	struct:hgBoundedHit
query	inc/pairHmm.h	/^    char *query;	\/* One sequence to align- all lower case. *\/$/;"	m	struct:phmmMatrix
query	inc/xa.h	/^    char *query;$/;"	m	struct:xaAli
query	jkOwnLib/xenbig.c	/^    char *query;$/;"	m	struct:cluster	file:
query	jkOwnLib/xenbig.c	/^    char *query;$/;"	m	struct:contig	file:
queryBaseCount	inc/blastParse.h	/^    int queryBaseCount;                 \/* Number of bases in query. *\/$/;"	m	struct:blastQuery
queryCols	hg/lib/genePredReader.c	/^    unsigned queryCols;$/;"	m	struct:genePredReader	file:
queryCoverage	inc/genoFind.h	/^    int queryCoverage;		\/* Number of bases covered in query (thx AG!) *\/$/;"	m	struct:gfClump
queryFile	jkOwnLib/xenbig.c	/^    char *queryFile;$/;"	m	struct:contig	file:
queryFormatRegex	hg/lib/hgFindSpecCustom.c	/^static char *queryFormatRegex =$/;"	v	file:
queryHash	inc/pslTbl.h	/^    struct hash *queryHash;            \/* hash of pslQuery objects *\/$/;"	m	struct:pslTbl	typeref:struct:pslTbl::hash
queryID	hg/inc/pslWQueryID.h	/^    char *queryID;	\/* query ID field *\/$/;"	m	struct:pslWQueryID
queryIx	inc/genoFind.h	/^    int queryIx;		\/* Index of query *\/$/;"	m	struct:gfOutput
queryIx	lib/pairHmm.c	/^    int queryIx;$/;"	m	struct:phmmAliPair	file:
queryNext	hg/lib/genePredReader.c	/^static struct genePred *queryNext(struct genePredReader* gpr)$/;"	f	file:
queryNext	hg/lib/pslReader.c	/^static struct psl *queryNext(struct pslReader* pr)$/;"	f	file:
queryOut	inc/genoFind.h	/^    void (*queryOut)(struct gfOutput *out, FILE *f); $/;"	m	struct:gfOutput
querySeqInfo	hg/lib/hdb.c	/^static boolean querySeqInfo(struct sqlConnection *conn, char *acc, char *seqTbl, char *extFileFld,$/;"	f	file:
querySize	inc/pairHmm.h	/^    int querySize;	\/* Size of query. *\/$/;"	m	struct:phmmMatrix
querySym	lib/pairHmm.c	/^    char querySym;$/;"	m	struct:phmmAliPair	file:
queryToFldMap	hg/lib/genePredReader.c	/^    int queryToFldMap[GENEPREDX_NUM_COLS+1];  \/* map of columns in query order$/;"	m	struct:genePredReader	file:
queryseqend	hg/inc/sargassoSeaXra.h	/^    unsigned queryseqend;	\/* Where alignment ends *\/$/;"	m	struct:sargassoSeaXra
queryseqstart	hg/inc/sargassoSeaXra.h	/^    unsigned queryseqstart;	\/* Where alignment begins *\/$/;"	m	struct:sargassoSeaXra
questionM	hg/inc/bgiSnp.h	/^    char questionM[2];	\/* L for dubious indels, H for other indels and SNPs *\/$/;"	m	struct:bgiSnp
queue	lib/synQueue.c	/^    struct dlList *queue;	\/* The queue itself. *\/$/;"	m	struct:synQueue	typeref:struct:synQueue::dlList	file:
quickHeap	inc/quickHeap.h	/^struct quickHeap $/;"	s
quickHeapBalanceWithChildren	lib/quickHeap.c	/^static void quickHeapBalanceWithChildren(struct quickHeap *h, int n)$/;"	f	file:
quickHeapEmpty	lib/quickHeap.c	/^boolean quickHeapEmpty(struct quickHeap *h)$/;"	f
quickHeapTopChanged	lib/quickHeap.c	/^void quickHeapTopChanged(struct quickHeap *h)$/;"	f
quotedPCollapse	lib/quotedP.c	/^boolean quotedPCollapse(char *line)$/;"	f
quotedPrintableDecode	lib/quotedP.c	/^char *quotedPrintableDecode(char *input)$/;"	f
quotedPrintableEncode	lib/quotedP.c	/^char *quotedPrintableEncode(char *input)$/;"	f
r	hg/inc/kgColor.h	/^    unsigned char r;	\/* Red component 0-255 *\/$/;"	m	struct:kgColor
r	inc/memgfx.h	/^    unsigned char r, g, b;$/;"	m	struct:rgbColor
rAddTrackListToHash	hg/lib/hui.c	/^void rAddTrackListToHash(struct hash *trackHash, struct trackDb *tdbList, char *chrom,$/;"	f
rBoxJoin	lib/boxClump.c	/^static void rBoxJoin(struct boxRef *refList, $/;"	f	file:
rCleanup	lib/udc.c	/^static bits64 rCleanup(time_t deleteTime, boolean testOnly)$/;"	f	file:
rEnd	hg/inc/pseudoGeneLink.h	/^    int rEnd;	\/* refSeq alignment end position *\/$/;"	m	struct:pseudoGeneLink
rEnd	hg/inc/retroMrnaInfo.h	/^    int rEnd;	\/* refSeq alignment end position col43 *\/$/;"	m	struct:retroMrnaInfo
rEnd	hg/inc/ucscRetroInfo.h	/^    int rEnd;	\/* refSeq alignment end position col41 *\/$/;"	m	struct:ucscRetroInfo
rEnd	hg/lib/geneGraph.c	/^static int rStart, rEnd;                \/* Start\/end of whole set in genomic coordinates*\/$/;"	v	file:
rEnd	inc/repMask.h	/^    unsigned rEnd;	\/* End position in repeat. *\/$/;"	m	struct:repeatMaskOut
rFamily	inc/repMask.h	/^    char *rFamily;	\/* Repeat name *\/$/;"	m	struct:repeatMaskOut
rFind	lib/bPlusTree.c	/^static boolean rFind(struct bptFile *bpt, bits64 blockStart, void *key, void *val)$/;"	f	file:
rFindConnected	lib/diGraph.c	/^static void rFindConnected(struct dgNode *a)$/;"	f	file:
rFindOverlappingBlocks	lib/cirTree.c	/^static void rFindOverlappingBlocks(struct cirTreeFile *crt, int level, bits64 indexFileOffset,$/;"	f	file:
rFindRoute	hg/lib/joiner.c	/^static struct joinerPair *rFindRoute(struct joiner *joiner, $/;"	f	file:
rFindTrack	hg/lib/hdb.c	/^static struct trackDb *rFindTrack(int level, struct trackDb *tdbList, char *track)$/;"	f	file:
rFindView	hg/lib/hui.c	/^struct trackDb *rFindView(struct trackDb *forest, char *view)$/;"	f
rGetRefsToDescendantLeaves	hg/lib/trackDbCustom.c	/^void rGetRefsToDescendantLeaves(struct slRef **pList, struct trackDb *tdbList)$/;"	f
rGetRefsToDescendants	hg/lib/trackDbCustom.c	/^void rGetRefsToDescendants(struct slRef **pList, struct trackDb *tdbList)$/;"	f
rHasCycles	lib/diGraph.c	/^static boolean  rHasCycles(struct dgNode *node)$/;"	f	file:
rInheritFields	hg/lib/hdb.c	/^static void rInheritFields(struct trackDb *tdbList)$/;"	f	file:
rLeft	inc/repMask.h	/^    char *rLeft;	\/* Bases left in repeat. *\/$/;"	m	struct:repeatMaskOut
rMarkUsed	hg/lib/chainNet.c	/^static void rMarkUsed(struct cnFill *fillList, Bits *bits, int maxId)$/;"	f	file:
rMustHaveVal	lib/diGraph.c	/^bool rMustHaveVal;			\/* Set to TRUE if rFindConnected only to$/;"	v
rName	hg/inc/samAlignment.h	/^    char *rName;	\/* Reference sequence name (often a chromosome) *\/$/;"	m	struct:samAlignment
rName	inc/repMask.h	/^    char *rName;	\/* Repeat name *\/$/;"	m	struct:repeatMaskOut
rNext	hg/inc/samAlignment.h	/^    char *rNext;	\/* Ref sequence for next (mate) read. '=' if same as rName, '*' if no mate *\/$/;"	m	struct:samAlignment
rOutput	hg/lib/geneGraph.c	/^static GgTransOut rOutput;		\/* Output transcript. *\/$/;"	v	file:
rPathExists	lib/diGraph.c	/^static boolean rPathExists(struct dgNode *a)$/;"	f	file:
rPos	inc/gfPcrLib.h	/^    int rPos;		\/* Position of reverse primer in seq. *\/$/;"	m	struct:gfPcrOutput
rPrimer	inc/gfPcrLib.h	/^    char *rPrimer;	\/* Reverse primer - after fPrimer and on opposite strand *\/$/;"	m	struct:gfPcrInput
rPrimer	inc/gfPcrLib.h	/^    char *rPrimer;	\/* Reverse primer - after fPrimer and on opposite strand *\/$/;"	m	struct:gfPcrOutput
rRefList	lib/diGraph.c	/^struct dgNodeRef *rRefList;$/;"	v	typeref:struct:dgNodeRef
rStart	hg/inc/pseudoGeneLink.h	/^    int rStart;	\/* refSeq alignment start position *\/$/;"	m	struct:pseudoGeneLink
rStart	hg/inc/retroMrnaInfo.h	/^    int rStart;	\/* refSeq alignment start position col42 *\/$/;"	m	struct:retroMrnaInfo
rStart	hg/inc/ucscRetroInfo.h	/^    int rStart;	\/* refSeq alignment start position col40 *\/$/;"	m	struct:ucscRetroInfo
rStart	hg/lib/geneGraph.c	/^static int rStart, rEnd;                \/* Start\/end of whole set in genomic coordinates*\/$/;"	v	file:
rStart	inc/repMask.h	/^    char *rStart;	\/* Start position in repeat. *\/$/;"	m	struct:repeatMaskOut
rStringIn	lib/common.c	/^char *rStringIn(char *needle, char *haystack)$/;"	f
rTarget	lib/diGraph.c	/^static struct dgNode *rTarget;$/;"	v	typeref:struct:dgNode	file:
rTdbTreeAllowPack	hg/lib/trackDbCustom.c	/^static void rTdbTreeAllowPack(struct trackDb *tdb)$/;"	f	file:
rTdbTreeCanPack	hg/lib/trackDbCustom.c	/^boolean rTdbTreeCanPack(struct trackDb *tdb)$/;"	f
rTempName	lib/osunix.c	/^char *rTempName(char *dir, char *base, char *suffix)$/;"	f
rTopoSort	lib/diGraph.c	/^static void rTopoSort(struct dgNode *node)$/;"	f	file:
rTraverse	hg/lib/geneGraph.c	/^static void rTraverse(struct geneGraph *gg, int startVertex)$/;"	f	file:
rTraverse	lib/bPlusTree.c	/^void rTraverse(struct bptFile *bpt, bits64 blockStart, void *context, $/;"	f
rTree	lib/cirTree.c	/^struct rTree$/;"	s	file:
rTreeContext	lib/rbTree.c	/^struct rTreeContext$/;"	s	file:
rTreeDump	lib/rbTree.c	/^static void rTreeDump(struct rbTreeNode *n)$/;"	f	file:
rTreeFromChromRangeArray	lib/cirTree.c	/^static struct rTree *rTreeFromChromRangeArray( struct lm *lm, int blockSize, int itemsPerSlot,$/;"	f	file:
rTreeTraverse	lib/rbTree.c	/^static void rTreeTraverse(struct rbTreeNode *n)$/;"	f	file:
rTreeTraverseRange	lib/rbTree.c	/^static void rTreeTraverseRange(struct rbTreeNode *n)$/;"	f	file:
rTreeTraverseWithContext	lib/rbTree.c	/^static void rTreeTraverseWithContext(struct rbTreeNode *n, struct rTreeContext *context)$/;"	f	file:
rVertexAlloc	hg/lib/geneGraph.c	/^static int rVertexAlloc = 0;		\/* Allocated size of stack. *\/$/;"	v	file:
rVertexCount	hg/lib/geneGraph.c	/^static int rVertexCount = 0;            \/* Count on stack. *\/$/;"	v	file:
rVertices	hg/lib/geneGraph.c	/^static struct ggVertex *rVertices;	\/* Vertex stack. *\/$/;"	v	typeref:struct:ggVertex	file:
rWriteIndexLevel	lib/cirTree.c	/^static bits64 rWriteIndexLevel(bits16 blockSize, int childNodeSize,$/;"	f	file:
rWriteLeaves	lib/cirTree.c	/^static void rWriteLeaves(int itemsPerSlot, int lNodeSize, struct rTree *tree, int curLevel,$/;"	f	file:
raFoldIn	lib/ra.c	/^void raFoldIn(char *fileName, struct hash *hashOfHash)$/;"	f
raFoldInOne	lib/ra.c	/^boolean raFoldInOne(struct lineFile *lf, struct hash *hashOfHash)$/;"	f
raFoldInOneRetName	lib/ra.c	/^char *raFoldInOneRetName(struct lineFile *lf, struct hash *hashOfHash)$/;"	f
raFromString	lib/ra.c	/^struct hash *raFromString(char *string)$/;"	f
raKey	hg/inc/gv.h	/^    char *raKey;	\/* key into .ra file on how to do link *\/$/;"	m	struct:gvLink
raKey	hg/inc/landmark.h	/^    char *raKey;	\/* key into RA file, tells how to link *\/$/;"	m	struct:landmarkAttrLink
raKey	hg/inc/omicia.h	/^    char *raKey;	\/* key into .ra file on how to do link *\/$/;"	m	struct:omiciaLink
raKey	hg/inc/oreganno.h	/^    char *raKey;	\/* key into RA file, tells how to link *\/$/;"	m	struct:oregannoLink
raKey	hg/inc/oregannoOther.h	/^    char *raKey;	\/* key into RA file, tells how to link *\/$/;"	m	struct:oregannoOtherLink
raKey	hg/inc/protVar.h	/^    char *raKey;	\/* key into .ra file on how to do link *\/$/;"	m	struct:protVarLink
raNextRecord	inc/ra.h	17;"	d
raNextRecordAsSlPairList	inc/ra.h	22;"	d
raNextStanzAsPairs	lib/ra.c	/^struct slPair *raNextStanzAsPairs(struct lineFile *lf)$/;"	f
raNextStanza	lib/ra.c	/^struct hash *raNextStanza(struct lineFile *lf)$/;"	f
raNextStanzaLinesAndUntouched	lib/ra.c	/^struct slPair *raNextStanzaLinesAndUntouched(struct lineFile *lf)$/;"	f
raNextTagVal	lib/ra.c	/^boolean raNextTagVal(struct lineFile *lf, char **retTag, char **retVal, struct dyString *dyRecord)$/;"	f
raReadAll	lib/ra.c	/^struct hash *raReadAll(char *fileName, char *keyField)$/;"	f
raReadSingle	lib/ra.c	/^struct hash *raReadSingle(char *fileName)$/;"	f
raReadThreeLevels	lib/ra.c	/^struct hash *raReadThreeLevels(char *fileName, char *lowKeyField, char *middleKeyField)$/;"	f
raReadWithFilter	lib/ra.c	/^struct hash *raReadWithFilter(char *fileName, char *keyField,char *filterKey,char *filterValue)$/;"	f
raSkipLeadingEmptyLines	lib/ra.c	/^boolean raSkipLeadingEmptyLines(struct lineFile *lf, struct dyString *dy)$/;"	f
raTagVals	lib/ra.c	/^struct hash *raTagVals(char *fileName, char *tag)$/;"	f
radioButton	hg/lib/hui.c	/^void radioButton(char *var, char *val, char *ourVal)$/;"	f
raiseInvalidEscape	lib/gff3.c	/^static void raiseInvalidEscape(struct gff3Ann *g3a, char *str)$/;"	f	file:
range	inc/bbiFile.h	/^    struct cirTreeRange range;	\/* What is covered. *\/$/;"	m	struct:bbiBoundsArray	typeref:struct:bbiBoundsArray::cirTreeRange
range	inc/rangeTree.h	/^struct range$/;"	s
rangeArrayIntersection	hg/lib/rangeTreeFile.c	/^unsigned rangeArrayIntersection(struct rangeStartSize *r1, struct rangeStartSize *r2, int n1, int n2, struct rangeStartSize **pRange, boolean saveMem, struct bed **pBed, char *chrom, struct lm *lm, int *n)$/;"	f
rangeArraySize	hg/lib/rangeTreeFile.c	/^unsigned rangeArraySize(struct rangeStartSize *r, int n)$/;"	f
rangeArrayToTree	hg/lib/rangeTreeFile.c	/^void rangeArrayToTree(struct rbTree *rt, struct rangeStartSize r[], int numNodes)$/;"	f
rangeArrayUnion	hg/lib/rangeTreeFile.c	/^unsigned rangeArrayUnion(struct rangeStartSize *r1, struct rangeStartSize *r2, int n1, int n2, struct rangeStartSize **pRange, boolean saveMem, struct bed **pBed, char *chrom, struct lm *lm, int *n)$/;"	f
rangeArrayUnionToFile	hg/lib/rangeTreeFile.c	/^unsigned rangeArrayUnionToFile(struct rangeStartSize *r1, struct rangeStartSize *r2, int n1, int n2, FILE *of, int *n)$/;"	f
rangeCmp	lib/rangeTree.c	/^int rangeCmp(void *va, void *vb)$/;"	f
rangeCoorTimes3	jkOwnLib/gfBlatLib.c	/^void rangeCoorTimes3(struct gfRange *rangeList)$/;"	f
rangeFromMinMaxMeanStd	lib/numObscure.c	/^void rangeFromMinMaxMeanStd(double minVal, double maxVal, double mean, double std,$/;"	f
rangeIncludingZero	lib/numObscure.c	/^static void rangeIncludingZero(double start, double end, double *retStart, double *retEnd)$/;"	f	file:
rangeIntersectOrTouch64	lib/udc.c	/^static boolean rangeIntersectOrTouch64(bits64 start1, bits64 end1, bits64 start2, bits64 end2)$/;"	f	file:
rangeIntersection	lib/common.c	/^int  rangeIntersection(int start1, int end1, int start2, int end2)$/;"	f
rangeList	lib/rangeTree.c	/^static struct range *rangeList;$/;"	v	typeref:struct:range	file:
rangeListAdd	lib/rangeTree.c	/^static void rangeListAdd(void *v)$/;"	f	file:
rangeListToSample	hg/lib/liftOver.c	/^static struct sample *rangeListToSample(struct liftRange *rangeList, $/;"	f	file:
rangeReadArray	hg/lib/rangeTreeFile.c	/^void rangeReadArray(FILE *f, struct rangeStartSize *r, int n, boolean isSwapped)$/;"	f
rangeReadOne	hg/lib/rangeTreeFile.c	/^struct range rangeReadOne(FILE *f, boolean isSwapped)$/;"	f
rangeReadOneWithVal	hg/lib/rangeTreeFile.c	/^struct range rangeReadOneWithVal(FILE *f, boolean isSwapped, void *(*valReadOne)(FILE *f, boolean isSwapped))$/;"	f
rangeReadWriteN	hg/lib/rangeTreeFile.c	/^void rangeReadWriteN(FILE *inF, int n, boolean isSwapped, FILE *outF)$/;"	f
rangeRoundUp	lib/numObscure.c	/^void rangeRoundUp(double start, double end, double *retStart, double *retEnd)$/;"	f
rangeScore	jkOwnLib/gfBlatLib.c	/^int rangeScore(struct gfRange *range, struct dnaSeq *qSeq)$/;"	f
rangeStart	lib/net.c	/^    off_t rangeStart;           \/* where does the range start *\/$/;"	m	struct:parallelConn	file:
rangeStartSize	hg/inc/rangeTreeFile.h	/^struct rangeStartSize$/;"	s
rangeTreeAdd	lib/rangeTree.c	/^struct range *rangeTreeAdd(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeAddToCoverageDepth	lib/rangeTree.c	/^void rangeTreeAddToCoverageDepth(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeAddVal	lib/rangeTree.c	/^struct range *rangeTreeAddVal(struct rbTree *tree, int start, int end, void *val, void *(*mergeVals)(void *existingVal, void *newVal) )$/;"	f
rangeTreeAddValCount	lib/rangeTree.c	/^struct range *rangeTreeAddValCount(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeAddValList	lib/rangeTree.c	/^struct range *rangeTreeAddValList(struct rbTree *tree, int start, int end, void *val)$/;"	f
rangeTreeAllOverlapping	lib/rangeTree.c	/^struct range *rangeTreeAllOverlapping(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeFindEnclosing	lib/rangeTree.c	/^struct range *rangeTreeFindEnclosing(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeFree	inc/rangeTree.h	26;"	d
rangeTreeList	lib/rangeTree.c	/^struct range *rangeTreeList(struct rbTree *tree)$/;"	f
rangeTreeMaxOverlapping	lib/rangeTree.c	/^struct range *rangeTreeMaxOverlapping(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeNew	lib/rangeTree.c	/^struct rbTree *rangeTreeNew()$/;"	f
rangeTreeNewDetailed	lib/rangeTree.c	/^struct rbTree *rangeTreeNewDetailed(struct lm *lm, struct rbTreeNode *stack[128])$/;"	f
rangeTreeOverlapSize	lib/rangeTree.c	/^int rangeTreeOverlapSize(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeOverlapTotalSize	lib/rangeTree.c	/^int rangeTreeOverlapTotalSize(struct rbTree *tree)$/;"	f
rangeTreeOverlaps	lib/rangeTree.c	/^boolean rangeTreeOverlaps(struct rbTree *tree, int start, int end)$/;"	f
rangeTreeReadNodes	hg/lib/rangeTreeFile.c	/^void rangeTreeReadNodes(FILE *f, struct rbTree *rt, int numNodes, boolean isSwapped)$/;"	f
rangeTreeReadNodesWithVal	hg/lib/rangeTreeFile.c	/^void rangeTreeReadNodesWithVal(FILE *f, struct rbTree *rt, int numNodes, boolean isSwapped, void *(*valReadOne)(FILE *f, boolean isSwapped))$/;"	f
rangeTreeReadNodesWithValMerge	hg/lib/rangeTreeFile.c	/^void rangeTreeReadNodesWithValMerge(FILE *f, struct rbTree *rt, int numNodes, boolean isSwapped, void *(*valReadOne)(FILE *f, boolean isSwapped), void *(*mergeVals)(void *existing, void *new) )$/;"	f
rangeTreeSizeInFile	hg/lib/rangeTreeFile.c	/^int rangeTreeSizeInFile(struct rbTree *tree)$/;"	f
rangeTreeSizeInFileWithVal	hg/lib/rangeTreeFile.c	/^int rangeTreeSizeInFileWithVal(struct rbTree *tree, int (*rangeValSizeInFile)(void *val))$/;"	f
rangeTreeWriteNodes	hg/lib/rangeTreeFile.c	/^void rangeTreeWriteNodes(struct rbTree *tree, FILE *f)$/;"	f
rangeTreeWriteNodesWithVal	hg/lib/rangeTreeFile.c	/^void rangeTreeWriteNodesWithVal(struct rbTree *tree, FILE *f, void (*valWriteOne)(void *val, FILE *f))$/;"	f
rangeValSize	hg/lib/rangeTreeFile.c	/^static void rangeValSize(void *val) $/;"	f	file:
rangeWriteArray	hg/lib/rangeTreeFile.c	/^void rangeWriteArray(struct rangeStartSize *r, int n, FILE *f)$/;"	f
rangeWriteArrayToBed	hg/lib/rangeTreeFile.c	/^void rangeWriteArrayToBed(char *chrom, struct rangeStartSize *r, int n, boolean withId, boolean mergeAdjacent, FILE *f)$/;"	f
rangeWriteFile	hg/lib/rangeTreeFile.c	/^static void rangeWriteFile(void *item)$/;"	f	file:
rangeWriteFileWithVal	hg/lib/rangeTreeFile.c	/^static void rangeWriteFileWithVal(void *item)$/;"	f	file:
rangeWriteOne	hg/lib/rangeTreeFile.c	/^void rangeWriteOne(struct range *r, FILE *f)$/;"	f
rangeWriteOneWithVal	hg/lib/rangeTreeFile.c	/^void rangeWriteOneWithVal(struct range *r, FILE *f, void (*valWriteOne)(void *val, FILE *f))$/;"	f
rank	hg/inc/taxonNode.h	/^    char *rank;	\/* rank of this node (superkingdom, kingdom, ...)  *\/$/;"	m	struct:taxonNode
rankProp	hg/inc/rankProp.h	/^struct rankProp$/;"	s
rankPropCommaIn	hg/lib/rankProp.c	/^struct rankProp *rankPropCommaIn(char **pS, struct rankProp *ret)$/;"	f
rankPropCommaOut	hg/inc/rankProp.h	57;"	d
rankPropFree	hg/lib/rankProp.c	/^void rankPropFree(struct rankProp **pEl)$/;"	f
rankPropFreeList	hg/lib/rankProp.c	/^void rankPropFreeList(struct rankProp **pList)$/;"	f
rankPropLoad	hg/lib/rankProp.c	/^struct rankProp *rankPropLoad(char **row)$/;"	f
rankPropLoadAll	hg/lib/rankProp.c	/^struct rankProp *rankPropLoadAll(char *fileName) $/;"	f
rankPropLoadAllByChar	hg/lib/rankProp.c	/^struct rankProp *rankPropLoadAllByChar(char *fileName, char chopper) $/;"	f
rankPropLoadAllByTab	hg/inc/rankProp.h	35;"	d
rankPropOutput	hg/lib/rankProp.c	/^void rankPropOutput(struct rankProp *el, FILE *f, char sep, char lastSep) $/;"	f
rankPropStaticLoad	hg/lib/rankProp.c	/^void rankPropStaticLoad(char **row, struct rankProp *ret)$/;"	f
rankPropTabOut	hg/inc/rankProp.h	54;"	d
rat1	hg/inc/stanMad.h	/^    float rat1;	\/* CH1D\/CH2D *\/$/;"	m	struct:stanMad
rat1n	hg/inc/stanMad.h	/^    float rat1n;	\/* CH1D\/CH2DN *\/$/;"	m	struct:stanMad
rat2	hg/inc/stanMad.h	/^    float rat2;	\/* CH2D\/CH1D *\/$/;"	m	struct:stanMad
rat2n	hg/inc/stanMad.h	/^    float rat2n;	\/* CH2DN\/CH1D *\/$/;"	m	struct:stanMad
ratio	hg/inc/cdsOrtho.h	/^    double ratio;	\/* orthoSize\/possibleSize *\/$/;"	m	struct:cdsOrtho
rawKeyIn	lib/osunix.c	/^int rawKeyIn()$/;"	f
rawLines	inc/linefile.h	/^    struct dyString *rawLines;  \/\/ Filled with raw lines used to create the full line$/;"	m	struct:lineFile	typeref:struct:lineFile::dyString
rawMM	hg/inc/affyTransLifted.h	/^    int rawMM;	\/* raw value of MM *\/$/;"	m	struct:affyTransLifted
rawPM	hg/inc/affyTransLifted.h	/^    int rawPM;	\/* raw value of PM *\/$/;"	m	struct:affyTransLifted
rawScore	hg/inc/peptideMapping.h	/^    float rawScore;	\/* Raw score for this hit, as estimated through HMM analysis *\/$/;"	m	struct:peptideMapping
rbTree	inc/rbTree.h	/^struct rbTree $/;"	s
rbTreeAdd	lib/rbTree.c	/^void *rbTreeAdd(struct rbTree *t, void *item)$/;"	f
rbTreeBlack	inc/rbTree.h	/^typedef enum {rbTreeRed,rbTreeBlack} rbTreeColor;$/;"	e	enum:__anon9
rbTreeCmpString	lib/rbTree.c	/^int rbTreeCmpString(void *a, void *b)$/;"	f
rbTreeCmpWord	lib/rbTree.c	/^int rbTreeCmpWord(void *a, void *b)	$/;"	f
rbTreeColor	inc/rbTree.h	/^typedef enum {rbTreeRed,rbTreeBlack} rbTreeColor;$/;"	t	typeref:enum:__anon9
rbTreeDump	lib/rbTree.c	/^void rbTreeDump(struct rbTree *tree, FILE *f, $/;"	f
rbTreeFind	lib/rbTree.c	/^void *rbTreeFind(struct rbTree *t, void *item)$/;"	f
rbTreeFree	lib/rbTree.c	/^void rbTreeFree(struct rbTree **pTree)$/;"	f
rbTreeFreeList	lib/rbTree.c	/^void rbTreeFreeList(struct rbTree **pList)$/;"	f
rbTreeItems	lib/rbTree.c	/^struct slRef *rbTreeItems(struct rbTree *tree)$/;"	f
rbTreeItemsInRange	lib/rbTree.c	/^struct slRef *rbTreeItemsInRange(struct rbTree *tree, void *minItem, void *maxItem)$/;"	f
rbTreeNew	lib/rbTree.c	/^struct rbTree *rbTreeNew(int (*compare)(void *, void *))$/;"	f
rbTreeNewDetailed	lib/rbTree.c	/^struct rbTree *rbTreeNewDetailed(int (*compare)(void *, void *), struct lm *lm, $/;"	f
rbTreeNode	inc/rbTree.h	/^struct rbTreeNode $/;"	s
rbTreeRed	inc/rbTree.h	/^typedef enum {rbTreeRed,rbTreeBlack} rbTreeColor;$/;"	e	enum:__anon9
rbTreeRemove	lib/rbTree.c	/^void *rbTreeRemove(struct rbTree *t, void *item)$/;"	f
rbTreeTraverse	lib/rbTree.c	/^void rbTreeTraverse(struct rbTree *tree, void (*doItem)(void *item))$/;"	f
rbTreeTraverseRange	lib/rbTree.c	/^void rbTreeTraverseRange(struct rbTree *tree, void *minItem, void *maxItem,$/;"	f
rbTreeTraverseWithContext	lib/rbTree.c	/^void rbTreeTraverseWithContext(struct rbTree *tree, $/;"	f
rc	hg/inc/hvGfx.h	/^    boolean rc;              \/* reverse-complement display (negative strand) *\/$/;"	m	struct:hvGfx
rcContigOffsets	jkOwnLib/xenbig.c	/^static void rcContigOffsets(struct contig *a, int revOff)$/;"	f	file:
rcQueryOffsetsAroundSeg	jkOwnLib/xenbig.c	/^static void rcQueryOffsetsAroundSeg(struct contig *a, int segStart, int segEnd)$/;"	f	file:
rcSeqs	lib/psl.c	/^static void rcSeqs(char **seqs, unsigned blockCount, unsigned *blockSizes)$/;"	f	file:
rcsid	hg/lib/omiciaUi.c	/^static char const rcsid[] = "$Id$";$/;"	v	file:
rcsid	hg/lib/oregannoOther.c	/^static char const rcsid[] = "$Id:$";$/;"	v	file:
rdList	inc/ace.h	/^    struct aceRD *rdList;$/;"	m	struct:ace	typeref:struct:ace::aceRD
reParent	lib/phyloTree.c	/^static void reParent(struct phyloTree *tree)$/;"	f	file:
read	inc/xp.h	/^    int (*read)(void *userData, char *buf, int bufSize);   \/* Read some more. *\/$/;"	m	struct:xp
readAllLines	lib/obscure.c	/^struct slName *readAllLines(char *fileName)$/;"	f
readAllWords	lib/obscure.c	/^void readAllWords(char *fileName, char ***retWords, int *retWordCount, char **retBuf)$/;"	f
readAndIgnore	hg/lib/customFactory.c	/^static boolean readAndIgnore(char *fileName)$/;"	f	file:
readAndIgnore	lib/udc.c	/^static void readAndIgnore(int sd, bits64 size)$/;"	f	file:
readBedToBinKeeper	lib/basicBed.c	/^struct hash *readBedToBinKeeper(char *sizeFileName, char *bedFileName, int wordCount)$/;"	f
readBits16	lib/common.c	/^bits16 readBits16(FILE *f, boolean isSwapped)$/;"	f
readBits32	lib/common.c	/^bits32 readBits32(FILE *f, boolean isSwapped)$/;"	f
readBits64	lib/common.c	/^bits64 readBits64(FILE *f, boolean isSwapped)$/;"	f
readBitsIntoBuf	lib/udc.c	/^static void readBitsIntoBuf(int fd, int headerSize, int bitStart, int bitEnd,$/;"	f	file:
readBlockCoords	lib/twoBit.c	/^static void readBlockCoords(FILE *f, boolean isSwapped, bits32 *retBlockCount,$/;"	f	file:
readDir	hg/inc/bgiSnp.h	/^    char readDir[2];	\/* Direction of read relative to reference *\/$/;"	m	struct:bgiSnp
readDir	inc/maDbRep.h	/^    signed char readDir;	\/* Read direction of mRNA +1 or -1 *\/$/;"	m	struct:mrnaAli
readDouble	lib/common.c	/^double readDouble(FILE *f, boolean isSwapped)$/;"	f
readEnd	hg/inc/bgiSnp.h	/^    unsigned readEnd;	\/* End position in alternate allele read *\/$/;"	m	struct:bgiSnp
readFloat	lib/common.c	/^float readFloat(FILE *f, boolean isSwapped)$/;"	f
readGcg	hg/lib/cutter.c	/^struct cutter *readGcg(char *gcgFile)$/;"	f
readInGulp	lib/obscure.c	/^void readInGulp(char *fileName, char **retBuf, size_t *retSize)$/;"	f
readIx	inc/oldGff.h	/^    int readIx;$/;"	m	struct:gff
readLabels	hg/lib/chromGraphFactory.c	/^static void readLabels(struct customPp *cpp, int dataStart, Chopper chopper,$/;"	f	file:
readLiftOverMap	hg/lib/liftOver.c	/^void readLiftOverMap(char *fileName, struct hash *chainHash)$/;"	f
readLifts	hg/lib/liftUp.c	/^struct liftSpec *readLifts(char *fileName)$/;"	f
readLine	lib/common.c	/^char* readLine(FILE* fh)$/;"	f
readMaskedNib	jkOwnLib/genoFind.c	/^struct dnaSeq *readMaskedNib(char *fileName, boolean mask)$/;"	f
readMaskedTwoBit	jkOwnLib/genoFind.c	/^struct dnaSeq *readMaskedTwoBit(struct twoBitFile *tbf, char *seqName,$/;"	f
readName	hg/inc/bgiSnp.h	/^    char *readName;	\/* Name of alternate allele read *\/$/;"	m	struct:bgiSnp
readName	inc/ace.h	/^    char *readName;$/;"	m	struct:aceAF
readName	inc/ace.h	/^    char *readName;$/;"	m	struct:aceRD
readName	inc/splatAli.h	/^    char *readName;	\/* Name of read *\/$/;"	m	struct:splatAli
readOne	inc/common.h	1091;"	d
readOneFd	inc/common.h	1094;"	d
readOpenFileSection	hg/lib/hdb.c	/^static void *readOpenFileSection(int fd, off_t offset, size_t size, char *fileName, char *acc)$/;"	f	file:
readParaFetchStatus	lib/net.c	/^boolean readParaFetchStatus(char *origPath, $/;"	f
readPartHeaderMB	lib/mime.c	/^static void readPartHeaderMB(struct mimeBuf *b, struct mimePart *p, char *altHeader)$/;"	f	file:
readPslToBinKeeper	lib/psl.c	/^struct hash *readPslToBinKeeper(char *sizeFileName, char *pslFileName)$/;"	f
readQuotedString	lib/gff.c	/^static void readQuotedString(char *fileName, int lineIx, char *in, char *out, char **retNext)$/;"	f	file:
readReadyWait	lib/net.c	/^static boolean readReadyWait(int sd, int microseconds)$/;"	f	file:
readReadyWait	lib/rudp.c	/^static boolean readReadyWait(int sd, int microseconds)$/;"	f	file:
readRepeats	hg/lib/rmskOut.c	/^struct binKeeper *readRepeats(char *chrom, char *rmskFileName, struct hash *tSizeHash)$/;"	f
readRepeatsAll	hg/lib/rmskOut.c	/^struct hash *readRepeatsAll(char *sizeFileName, char *rmskDir)$/;"	f
readShortNum	hg/lib/qaSeq.c	/^static int readShortNum(char *s, struct lineFile *lf) $/;"	f	file:
readSizesFile	hg/lib/alignSeqSizes.c	/^static void readSizesFile(char *fileName, struct hash *sizes)$/;"	f	file:
readStart	hg/inc/bgiSnp.h	/^    unsigned readStart;	\/* Start position in alternate allele read *\/$/;"	m	struct:bgiSnp
readString	lib/common.c	/^char *readString(FILE *f)$/;"	f
readStringZ	lib/fof.c	/^static void readStringZ(FILE *f, char *s, int maxLen)$/;"	f	file:
readTaggedNumLine	lib/gapCalc.c	/^static void readTaggedNumLine(struct lineFile *lf, char *tag, $/;"	f	file:
reads	inc/ace.h	/^    int reads;$/;"	m	struct:aceAS
reads	inc/ace.h	/^    int reads;$/;"	m	struct:aceCO
realInfoString	lib/wormdna.c	/^static char *realInfoString(char *s)$/;"	f	file:
realloc	inc/memalloc.h	/^    void * (*realloc)(void* vpt, size_t size);$/;"	m	struct:memHandler
reason	hg/inc/gbWarn.h	/^    enum gbWarnReason reason;	\/* reason for warning *\/$/;"	m	struct:gbWarn	typeref:enum:gbWarn::gbWarnReason
reasonablePrefix	lib/trix.c	/^static int reasonablePrefix(char *prefix, char *word, boolean expand)$/;"	f	file:
rec	lib/fof.c	/^    struct fofRecord *rec;       \/* Buffer space for one index record. *\/$/;"	m	struct:fof	typeref:struct:fof::fofRecord	file:
rec	lib/fof.c	/^    struct fofRecord rec;$/;"	m	struct:fofRecList	typeref:struct:fofRecList::fofRecord	file:
recNameToFileName	hg/lib/hCommon.c	/^void recNameToFileName(char *dir, char *recName, char *fileName, char *suffix)$/;"	f
recType	hg/inc/hgnc.h	/^    char *recType;	\/* Record Type *\/$/;"	m	struct:hgnc
receiveCount	inc/rudp.h	/^    int receiveCount;	\/* Number of packets attempted to receive. *\/$/;"	m	struct:rudp
receiveFtpReply	lib/net.c	/^static boolean receiveFtpReply(int sd, char *cmd, struct dyString **retReply, int *retCode)$/;"	f	file:
received	lib/net.c	/^    off_t received;             \/* bytes received *\/$/;"	m	struct:parallelConn	file:
recognizer	hg/inc/customFactory.h	/^    boolean (*recognizer)(struct customFactory *fac,$/;"	m	struct:customFactory
recombRate	hg/inc/recombRate.h	/^struct recombRate$/;"	s
recombRateCommaIn	hg/lib/recombRate.c	/^struct recombRate *recombRateCommaIn(char **pS, struct recombRate *ret)$/;"	f
recombRateCommaOut	hg/inc/recombRate.h	62;"	d
recombRateFree	hg/lib/recombRate.c	/^void recombRateFree(struct recombRate **pEl)$/;"	f
recombRateFreeList	hg/lib/recombRate.c	/^void recombRateFreeList(struct recombRate **pList)$/;"	f
recombRateLoad	hg/lib/recombRate.c	/^struct recombRate *recombRateLoad(char **row)$/;"	f
recombRateLoadAll	hg/lib/recombRate.c	/^struct recombRate *recombRateLoadAll(char *fileName) $/;"	f
recombRateLoadWhere	hg/lib/recombRate.c	/^struct recombRate *recombRateLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
recombRateMouse	hg/inc/recombRateMouse.h	/^struct recombRateMouse$/;"	s
recombRateMouseCommaIn	hg/lib/recombRateMouse.c	/^struct recombRateMouse *recombRateMouseCommaIn(char **pS, struct recombRateMouse *ret)$/;"	f
recombRateMouseCommaOut	hg/inc/recombRateMouse.h	60;"	d
recombRateMouseFree	hg/lib/recombRateMouse.c	/^void recombRateMouseFree(struct recombRateMouse **pEl)$/;"	f
recombRateMouseFreeList	hg/lib/recombRateMouse.c	/^void recombRateMouseFreeList(struct recombRateMouse **pList)$/;"	f
recombRateMouseLoad	hg/lib/recombRateMouse.c	/^struct recombRateMouse *recombRateMouseLoad(char **row)$/;"	f
recombRateMouseLoadAll	hg/lib/recombRateMouse.c	/^struct recombRateMouse *recombRateMouseLoadAll(char *fileName) $/;"	f
recombRateMouseLoadAllByChar	hg/lib/recombRateMouse.c	/^struct recombRateMouse *recombRateMouseLoadAllByChar(char *fileName, char chopper) $/;"	f
recombRateMouseLoadAllByTab	hg/inc/recombRateMouse.h	38;"	d
recombRateMouseOptEnum	hg/inc/hui.h	/^enum recombRateMouseOptEnum {$/;"	g
recombRateMouseOptions	hg/lib/hui.c	/^static char *recombRateMouseOptions[] = {$/;"	v	file:
recombRateMouseOutput	hg/lib/recombRateMouse.c	/^void recombRateMouseOutput(struct recombRateMouse *el, FILE *f, char sep, char lastSep) $/;"	f
recombRateMouseStaticLoad	hg/lib/recombRateMouse.c	/^void recombRateMouseStaticLoad(char **row, struct recombRateMouse *ret)$/;"	f
recombRateMouseTabOut	hg/inc/recombRateMouse.h	57;"	d
recombRateOptEnum	hg/inc/hui.h	/^enum recombRateOptEnum {$/;"	g
recombRateOptions	hg/lib/hui.c	/^static char *recombRateOptions[] = {$/;"	v	file:
recombRateOutput	hg/lib/recombRate.c	/^void recombRateOutput(struct recombRate *el, FILE *f, char sep, char lastSep) $/;"	f
recombRateRat	hg/inc/recombRateRat.h	/^struct recombRateRat$/;"	s
recombRateRatCommaIn	hg/lib/recombRateRat.c	/^struct recombRateRat *recombRateRatCommaIn(char **pS, struct recombRateRat *ret)$/;"	f
recombRateRatCommaOut	hg/inc/recombRateRat.h	60;"	d
recombRateRatFree	hg/lib/recombRateRat.c	/^void recombRateRatFree(struct recombRateRat **pEl)$/;"	f
recombRateRatFreeList	hg/lib/recombRateRat.c	/^void recombRateRatFreeList(struct recombRateRat **pList)$/;"	f
recombRateRatLoad	hg/lib/recombRateRat.c	/^struct recombRateRat *recombRateRatLoad(char **row)$/;"	f
recombRateRatLoadAll	hg/lib/recombRateRat.c	/^struct recombRateRat *recombRateRatLoadAll(char *fileName) $/;"	f
recombRateRatLoadAllByChar	hg/lib/recombRateRat.c	/^struct recombRateRat *recombRateRatLoadAllByChar(char *fileName, char chopper) $/;"	f
recombRateRatLoadAllByTab	hg/inc/recombRateRat.h	38;"	d
recombRateRatOptEnum	hg/inc/hui.h	/^enum recombRateRatOptEnum {$/;"	g
recombRateRatOptions	hg/lib/hui.c	/^static char *recombRateRatOptions[] = {$/;"	v	file:
recombRateRatOutput	hg/lib/recombRateRat.c	/^void recombRateRatOutput(struct recombRateRat *el, FILE *f, char sep, char lastSep) $/;"	f
recombRateRatStaticLoad	hg/lib/recombRateRat.c	/^void recombRateRatStaticLoad(char **row, struct recombRateRat *ret)$/;"	f
recombRateRatTabOut	hg/inc/recombRateRat.h	57;"	d
recombRateStaticLoad	hg/lib/recombRate.c	/^void recombRateStaticLoad(char **row, struct recombRate *ret)$/;"	f
recombRateTabOut	hg/inc/recombRate.h	59;"	d
reconsiderAlignedGaps	jkOwnLib/fuzzyFind.c	/^static struct ffAli *reconsiderAlignedGaps(struct ffAli *ali)$/;"	f	file:
record	lib/annoStreamVcf.c	/^    struct vcfRecord *record;		\/\/ Current parsed row of VCF (need this for chromEnd)$/;"	m	struct:annoStreamVcf	typeref:struct:annoStreamVcf::vcfRecord	file:
records	inc/vcf.h	/^    struct vcfRecord *records;	\/\/ VCF data rows, sorted by position$/;"	m	struct:vcfFile	typeref:struct:vcfFile::vcfRecord
recover	lib/gifcomp.c	/^static jmp_buf recover;$/;"	v	file:
recurseCount	lib/phyloTree.c	/^static int recurseCount = 0;$/;"	v	file:
recursiveWeave	jkOwnLib/fuzzyFind.c	/^static struct ffAli *recursiveWeave(DNA *ns, DNA *ne, DNA *hs, DNA *he, $/;"	f	file:
recvCount	inc/rudp.h	/^    int recvCount;           \/* number in list clean *\/$/;"	m	struct:rudp
recvHash	inc/rudp.h	/^    struct hash *recvHash;   \/* hash of data received - helps filter out duplicate received packets *\/$/;"	m	struct:rudp	typeref:struct:rudp::hash
recvHashKey	inc/rudp.h	/^    char *recvHashKey;          \/* hash key *\/$/;"	m	struct:packetSeen
recvList	inc/rudp.h	/^    struct dlList *recvList; \/* list of data received - helps filter out duplicate received packets *\/$/;"	m	struct:rudp	typeref:struct:rudp::dlList
redBlue	hg/inc/microarray.h	/^    redBlue = 1,$/;"	e	enum:expColorType
redBlueOnWhite	hg/inc/microarray.h	/^    redBlueOnWhite = 3,$/;"	e	enum:expColorType
redBlueOnYellow	hg/inc/microarray.h	/^    redBlueOnYellow = 4,$/;"	e	enum:expColorType
redGreen	hg/inc/hui.h	/^    boolean redGreen;         \/* True if red\/green color scheme, Otherwise blue\/red color scheme. *\/$/;"	m	struct:expdFilter
redGreen	hg/inc/microarray.h	/^    redGreen = 0,$/;"	e	enum:expColorType
reductionLevel	inc/bbiFile.h	/^    bits32 reductionLevel;		\/* How many bases per item *\/$/;"	m	struct:bbiZoomLevel
ref	hg/inc/expRecord.h	/^    char *ref;	\/* reference for experiment *\/$/;"	m	struct:expRecord
refAdd	lib/common.c	/^void refAdd(struct slRef **pRefList, void *val)$/;"	f
refAddUnique	lib/common.c	/^void refAddUnique(struct slRef **pRefList, void *val)$/;"	f
refAllele	hg/inc/hapmapAlleleFreq.h	/^    char refAllele[2];	\/* Reference allele *\/$/;"	m	struct:hapmapAlleleFreq
refAllele	hg/inc/hapmapPrimateAlleles.h	/^    char refAllele;	\/* A, C, G, or T *\/$/;"	m	struct:hapmapPrimateAlleles
refAlleleFreq	hg/inc/hapmapAlleleFreq.h	/^    float refAlleleFreq;	\/* Reference allele frequency (between 0.0 and 1.0) *\/$/;"	m	struct:hapmapAlleleFreq
refLink	hg/inc/refLink.h	/^struct refLink$/;"	s
refLinkCommaIn	hg/lib/refLink.c	/^struct refLink *refLinkCommaIn(char **pS, struct refLink *ret)$/;"	f
refLinkCommaOut	hg/inc/refLink.h	52;"	d
refLinkFree	hg/lib/refLink.c	/^void refLinkFree(struct refLink **pEl)$/;"	f
refLinkFreeList	hg/lib/refLink.c	/^void refLinkFreeList(struct refLink **pList)$/;"	f
refLinkLoad	hg/lib/refLink.c	/^struct refLink *refLinkLoad(char **row)$/;"	f
refLinkLoadAll	hg/lib/refLink.c	/^struct refLink *refLinkLoadAll(char *fileName) $/;"	f
refLinkOutput	hg/lib/refLink.c	/^void refLinkOutput(struct refLink *el, FILE *f, char sep, char lastSep) $/;"	f
refLinkStaticLoad	hg/lib/refLink.c	/^void refLinkStaticLoad(char **row, struct refLink *ret)$/;"	f
refLinkTabOut	hg/inc/refLink.h	49;"	d
refList	hg/inc/geneGraph.h	/^    struct maRef *refList;                  \/* Full cDNA alignments. *\/$/;"	m	struct:ggMrnaCluster	typeref:struct:ggMrnaCluster::maRef
refListFromSlList	lib/common.c	/^struct slRef *refListFromSlList(void *list)$/;"	f
refNCBI	hg/inc/snp125.h	/^    char *refNCBI;	\/* Reference genomic from dbSNP *\/$/;"	m	struct:snp125
refNCBI	hg/inc/snp125.h	/^    char *refNCBI;	\/* Reference genomic from dbSNP *\/$/;"	m	struct:snp125Extended
refNCBI	hg/inc/snp132Ext.h	/^    char *refNCBI;	\/* Reference genomic sequence from dbSNP *\/$/;"	m	struct:snp132Ext
refNCBI	hg/inc/snpTmp.h	/^    char *refNCBI;	\/* Reference genomic from dbSNP *\/$/;"	m	struct:snpTmp
refOnList	lib/common.c	/^struct slRef *refOnList(struct slRef *refList, void *val)$/;"	f
refProt	hg/inc/cdsPick.h	/^    char *refProt;	\/* RefSeq protein if available. *\/$/;"	m	struct:cdsPick
refSeq	hg/inc/cdsPick.h	/^    char *refSeq;	\/* RefSeq transcript if available. *\/$/;"	m	struct:cdsPick
refSeq	hg/inc/ensXRefZfish.h	/^    char *refSeq;	\/* RefSeq DNA Accession *\/$/;"	m	struct:ensXRefZfish
refSeq	hg/inc/pseudoGeneLink.h	/^    char *refSeq;	\/* Name of closest regSeq to gene *\/$/;"	m	struct:pseudoGeneLink
refSeq	hg/inc/retroMrnaInfo.h	/^    char *refSeq;	\/* Name of closest regSeq to gene col41 *\/$/;"	m	struct:retroMrnaInfo
refSeq	hg/inc/ucscRetroInfo.h	/^    char *refSeq;	\/* Name of closest regSeq to gene col39 *\/$/;"	m	struct:ucscRetroInfo
refSeqAcc	hg/inc/knownMore.h	/^    char *refSeqAcc;	\/* Accession of RefSeq mRNA *\/$/;"	m	struct:knownMore
refSeqCount	hg/inc/rikenBest.h	/^    int refSeqCount;	\/* Number of RefSeq mRNAs in cluster *\/$/;"	m	struct:rikenBest
refSeqCount	hg/inc/rikenCluster.h	/^    unsigned refSeqCount;	\/* Number of refSeq mrnas in cluster *\/$/;"	m	struct:rikenUcscCluster
refSeqCount	hg/inc/rnaGroup.h	/^    unsigned refSeqCount;	\/* Number of refSeq mrnas in cluster *\/$/;"	m	struct:rnaGroup
refSeqIds	hg/inc/hgnc.h	/^    char *refSeqIds;	\/* RefSeq IDs *\/$/;"	m	struct:hgnc
refSeqMapped	hg/inc/hgnc.h	/^    char *refSeqMapped;	\/* RefSeq (mapped data) *\/$/;"	m	struct:hgnc
refSeqStatus	hg/inc/refSeqStatus.h	/^struct refSeqStatus$/;"	s
refSeqStatusCommaIn	hg/lib/refSeqStatus.c	/^struct refSeqStatus *refSeqStatusCommaIn(char **pS, struct refSeqStatus *ret)$/;"	f
refSeqStatusCommaOut	hg/inc/refSeqStatus.h	85;"	d
refSeqStatusDNA	hg/inc/refSeqStatus.h	/^    refSeqStatusDNA = 0,$/;"	e	enum:refSeqStatusMol
refSeqStatusDs_RNA	hg/inc/refSeqStatus.h	/^    refSeqStatusDs_RNA = 2,$/;"	e	enum:refSeqStatusMol
refSeqStatusDs_mRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusDs_mRNA = 3,$/;"	e	enum:refSeqStatusMol
refSeqStatusDs_rRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusDs_rRNA = 4,$/;"	e	enum:refSeqStatusMol
refSeqStatusFree	hg/lib/refSeqStatus.c	/^void refSeqStatusFree(struct refSeqStatus **pEl)$/;"	f
refSeqStatusFreeList	hg/lib/refSeqStatus.c	/^void refSeqStatusFreeList(struct refSeqStatus **pList)$/;"	f
refSeqStatusInferred	hg/inc/refSeqStatus.h	/^    refSeqStatusInferred = 5,$/;"	e	enum:refSeqStatusStatus
refSeqStatusLoad	hg/lib/refSeqStatus.c	/^struct refSeqStatus *refSeqStatusLoad(char **row)$/;"	f
refSeqStatusLoadAll	hg/lib/refSeqStatus.c	/^struct refSeqStatus *refSeqStatusLoadAll(char *fileName) $/;"	f
refSeqStatusLoadAllByChar	hg/lib/refSeqStatus.c	/^struct refSeqStatus *refSeqStatusLoadAllByChar(char *fileName, char chopper) $/;"	f
refSeqStatusLoadAllByTab	hg/inc/refSeqStatus.h	63;"	d
refSeqStatusMRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusMRNA = 5,$/;"	e	enum:refSeqStatusMol
refSeqStatusMol	hg/inc/refSeqStatus.h	/^enum refSeqStatusMol$/;"	g
refSeqStatusMs_DNA	hg/inc/refSeqStatus.h	/^    refSeqStatusMs_DNA = 6,$/;"	e	enum:refSeqStatusMol
refSeqStatusMs_RNA	hg/inc/refSeqStatus.h	/^    refSeqStatusMs_RNA = 7,$/;"	e	enum:refSeqStatusMol
refSeqStatusOutput	hg/lib/refSeqStatus.c	/^void refSeqStatusOutput(struct refSeqStatus *el, FILE *f, char sep, char lastSep) $/;"	f
refSeqStatusPredicted	hg/inc/refSeqStatus.h	/^    refSeqStatusPredicted = 4,$/;"	e	enum:refSeqStatusStatus
refSeqStatusProvisional	hg/inc/refSeqStatus.h	/^    refSeqStatusProvisional = 3,$/;"	e	enum:refSeqStatusStatus
refSeqStatusRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusRNA = 1,$/;"	e	enum:refSeqStatusMol
refSeqStatusRRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusRRNA = 8,$/;"	e	enum:refSeqStatusMol
refSeqStatusReviewed	hg/inc/refSeqStatus.h	/^    refSeqStatusReviewed = 1,$/;"	e	enum:refSeqStatusStatus
refSeqStatusScRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusScRNA = 9,$/;"	e	enum:refSeqStatusMol
refSeqStatusSnRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusSnRNA = 10,$/;"	e	enum:refSeqStatusMol
refSeqStatusSnoRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusSnoRNA = 11,$/;"	e	enum:refSeqStatusMol
refSeqStatusSs_DNA	hg/inc/refSeqStatus.h	/^    refSeqStatusSs_DNA = 12,$/;"	e	enum:refSeqStatusMol
refSeqStatusSs_RNA	hg/inc/refSeqStatus.h	/^    refSeqStatusSs_RNA = 13,$/;"	e	enum:refSeqStatusMol
refSeqStatusSs_snoRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusSs_snoRNA = 14,$/;"	e	enum:refSeqStatusMol
refSeqStatusStaticLoad	hg/lib/refSeqStatus.c	/^void refSeqStatusStaticLoad(char **row, struct refSeqStatus *ret)$/;"	f
refSeqStatusStatus	hg/inc/refSeqStatus.h	/^enum refSeqStatusStatus$/;"	g
refSeqStatusTRNA	hg/inc/refSeqStatus.h	/^    refSeqStatusTRNA = 15,$/;"	e	enum:refSeqStatusMol
refSeqStatusTabOut	hg/inc/refSeqStatus.h	82;"	d
refSeqStatusUnknown	hg/inc/refSeqStatus.h	/^    refSeqStatusUnknown = 0,$/;"	e	enum:refSeqStatusStatus
refSeqStatusValidated	hg/inc/refSeqStatus.h	/^    refSeqStatusValidated = 2,$/;"	e	enum:refSeqStatusStatus
refSeqTarget	hg/inc/rnaHybridization.h	/^    char *refSeqTarget;	\/* refSeq gene name for target or empty *\/$/;"	m	struct:rnaHybridization
refSeqs	hg/inc/rikenCluster.h	/^    char **refSeqs;	\/* List of refSeq accessions *\/$/;"	m	struct:rikenUcscCluster
refSeqs	hg/inc/rnaGroup.h	/^    char **refSeqs;	\/* List of refSeq accessions *\/$/;"	m	struct:rnaGroup
refUCSC	hg/inc/hapmapAllelesOrtho.h	/^    char *refUCSC;	\/* Reference genomic *\/$/;"	m	struct:hapmapAllelesOrtho
refUCSC	hg/inc/snp125.h	/^    char *refUCSC;	\/* Reference genomic from nib lookup *\/$/;"	m	struct:snp125
refUCSC	hg/inc/snp125.h	/^    char *refUCSC;	\/* Reference genomic from nib lookup *\/$/;"	m	struct:snp125Extended
refUCSC	hg/inc/snp132Ext.h	/^    char *refUCSC;	\/* Reference genomic sequence from UCSC lookup of chrom,chromStart,chromEnd *\/$/;"	m	struct:snp132Ext
reference	hg/inc/dbRIP.h	/^    char *reference;	\/* reference *\/$/;"	m	struct:dbRIP
reference	hg/inc/dgv.h	/^    char *reference;	\/* Literature reference for the study that included this variant *\/$/;"	m	struct:dgv
reference	hg/inc/spDb.h	/^    int reference;	\/* ID in reference table. *\/$/;"	m	struct:spCitation
referrer	inc/apacheLog.h	/^    char *referrer;	\/* Referring URL, may be NULL. *\/$/;"	m	struct:apacheAccessLog
refineBundle	jkOwnLib/ffSeedExtend.c	/^static void refineBundle(struct genoFind *gf, $/;"	f	file:
refineSmallExons	jkOwnLib/gfBlatLib.c	/^static struct ffAli *refineSmallExons(struct ffAli *ff, $/;"	f	file:
refineSmallExonsInBundle	jkOwnLib/gfBlatLib.c	/^static void refineSmallExonsInBundle(struct ssBundle *bun)$/;"	f	file:
refineSpliceSites	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *refineSpliceSites(struct dnaSeq *qSeq, struct dnaSeq *tSeq,$/;"	f	file:
refs	hg/inc/cutter.h	/^    unsigned *refs;	\/* Reference numbers *\/$/;"	m	struct:cutter
refseq	hg/inc/kgXref.h	/^    char *refseq;	\/* RefSeq ID *\/$/;"	m	struct:kgXref
regDef	inc/maf.h	/^    struct mafRegDef *regDef; \/* source of region definitions (r line) *\/$/;"	m	struct:mafAli	typeref:struct:mafAli::mafRegDef
regEnd	hg/inc/pgSnp.h	/^    int regEnd;$/;"	m	struct:pgCodon
regStart	hg/inc/pgSnp.h	/^    int regStart; \/* in coding sequence positions *\/$/;"	m	struct:pgCodon
regexCompile	lib/regexHelper.c	/^const regex_t *regexCompile(const char *exp, const char *description, int compileFlags)$/;"	f
regexMatch	lib/regexHelper.c	/^boolean regexMatch(const char *string, const char *exp)$/;"	f
regexMatchNoCase	lib/regexHelper.c	/^boolean regexMatchNoCase(const char *string, const char *exp)$/;"	f
regexMatchSubstr	lib/regexHelper.c	/^boolean regexMatchSubstr(const char *string, const char *exp,$/;"	f
regexMatchSubstrMaybeCase	lib/regexHelper.c	/^static boolean regexMatchSubstrMaybeCase(const char *string, const char *exp,$/;"	f	file:
regexMatchSubstrNoCase	lib/regexHelper.c	/^boolean regexMatchSubstrNoCase(const char *string, const char *exp,$/;"	f
region	hg/inc/gwasCatalog.h	/^    char *region;	\/* Chromosome band \/ region of SNP *\/$/;"	m	struct:gwasCatalog
regionEnd	inc/annoStreamer.h	/^    uint regionEnd;$/;"	m	struct:annoStreamer
regionStart	inc/annoStreamer.h	/^    uint regionStart;$/;"	m	struct:annoStreamer
regr	hg/inc/stanMad.h	/^    float regr;	\/* The ratio estimated by the slope of the line fit to the distribution of pixels in each spot. *\/$/;"	m	struct:stanMad
regulatory_region_variant	hg/inc/soterm.h	/^    regulatory_region_variant=1566,$/;"	e	enum:__anon11
relDir	lib/fof.c	/^    char *relDir;                \/* Directory to apply to index files. *\/$/;"	m	struct:fof	file:
relationship	hg/inc/bacCloneXRef.h	/^    unsigned relationship;	\/* Relationship type - method of finding STS *\/$/;"	m	struct:bacCloneXRef
remapBlockedBed	hg/lib/liftOver.c	/^static char *remapBlockedBed(struct hash *chainHash, struct bed *bed)$/;"	f	file:
remapBlockedBed	hg/lib/liftOver.c	/^static char *remapBlockedBed(struct hash *chainHash, struct bed *bed, $/;"	f	file:
remapBlockedPsl	hg/lib/liftOver.c	/^static char *remapBlockedPsl(struct hash *chainHash, struct psl *psl, $/;"	f	file:
remapRange	hg/lib/liftOver.c	/^static char *remapRange(struct hash *chainHash, double minRatio, $/;"	f	file:
remapRangeList	hg/lib/liftOver.c	/^static void remapRangeList(struct chain *chain, struct liftRange **pRangeList,$/;"	f	file:
remapSample	hg/lib/liftOver.c	/^static void remapSample(struct hash *chainHash, struct sample *sample, $/;"	f	file:
remarks	hg/inc/dbRIP.h	/^    char *remarks;	\/* remarks *\/$/;"	m	struct:dbRIP
remoteFileSize	hg/inc/customPp.h	/^    off_t remoteFileSize;	\/* reported size from URL *\/$/;"	m	struct:customPp
remoteFileSize	lib/udc.c	/^off_t remoteFileSize(char *url)$/;"	f
remoteUpdate	lib/udc.c	/^    bits64 remoteUpdate;	\/* Remote last update time. *\/$/;"	m	struct:udcBitmap	file:
removeCommonMdbVarsNotInSortOrder	hg/lib/fileUi.c	/^static int removeCommonMdbVarsNotInSortOrder(struct mdbObj *mdbObjs,sortOrder_t *sortOrder)$/;"	f	file:
removeFf	jkOwnLib/ffSeedExtend.c	/^struct ffAli *removeFf(struct ffAli *ff, struct ffAli *ffList)$/;"	f
removeFromQuickHeapByElem	lib/quickHeap.c	/^boolean removeFromQuickHeapByElem(struct quickHeap *h, void *elem)$/;"	f
removeFromQuickHeapN	lib/quickHeap.c	/^static void removeFromQuickHeapN(struct quickHeap *h, int n)$/;"	f	file:
removeNegativeBlocks	lib/chainConnect.c	/^static boolean removeNegativeBlocks(struct chain *chain)$/;"	f	file:
removeQuickHeapTop	lib/quickHeap.c	/^void *removeQuickHeapTop(struct quickHeap *h)$/;"	f
removeReturns	lib/common.c	/^void removeReturns(char *dest, char *src)$/;"	f
removeThrowbackHits	jkOwnLib/fuzzyFind.c	/^void removeThrowbackHits(struct protoGene *proto)$/;"	f
removeTooCommon	hg/lib/hgFind.c	/^static int removeTooCommon(char *table, char **keys, int keyCount)$/;"	f	file:
repClass	hg/inc/rmskOut.h	/^    char *repClass;	\/* Class of repeat *\/$/;"	m	struct:rmskOut
repEnd	hg/inc/rmskOut.h	/^    int repEnd;		\/* End in repeat sequence *\/$/;"	m	struct:rmskOut
repFamily	hg/inc/rmskOut.h	/^    char *repFamily;	\/* Family of repeat *\/$/;"	m	struct:rmskOut
repLeft	hg/inc/rmskOut.h	/^    int repLeft;	\/* Size left in repeat sequence *\/$/;"	m	struct:rmskOut
repMatch	hg/inc/pslWScore.h	/^    unsigned repMatch;	\/* Number of bases that match but are part of repeats *\/$/;"	m	struct:pslWScore
repMatch	inc/psl.h	/^    unsigned repMatch;	\/* Number of bases that match but are part of repeats *\/$/;"	m	struct:psl
repMatch	inc/xAli.h	/^    unsigned repMatch;	\/* Number of bases that match but are part of repeats *\/$/;"	m	struct:xAli
repMatches	hg/inc/pslWQueryID.h	/^    unsigned repMatches;	\/* Number of bases that match but are part of repeats *\/$/;"	m	struct:pslWQueryID
repName	hg/inc/rmskOut.h	/^    char *repName;	\/* Name of repeat *\/$/;"	m	struct:rmskOut
repStart	hg/inc/rmskOut.h	/^    int repStart;	\/* Start in repeat sequence *\/$/;"	m	struct:rmskOut
repeatCharOut	lib/common.c	/^void repeatCharOut(FILE *f, char c, int count)$/;"	f
repeatCount	hg/inc/vntr.h	/^    float repeatCount;	\/* Number of perfect repeats *\/$/;"	m	struct:vntr
repeatMaskOut	inc/repMask.h	/^struct repeatMaskOut$/;"	s
repeatMaskOutCommaIn	lib/repMask.c	/^struct repeatMaskOut *repeatMaskOutCommaIn(char **pS)$/;"	f
repeatMaskOutCommaOut	inc/repMask.h	52;"	d
repeatMaskOutFree	lib/repMask.c	/^void repeatMaskOutFree(struct repeatMaskOut **pEl)$/;"	f
repeatMaskOutFreeList	lib/repMask.c	/^void repeatMaskOutFreeList(struct repeatMaskOut **pList)$/;"	f
repeatMaskOutLoad	lib/repMask.c	/^struct repeatMaskOut *repeatMaskOutLoad(char **row)$/;"	f
repeatMaskOutOutput	lib/repMask.c	/^void repeatMaskOutOutput(struct repeatMaskOut *el, FILE *f, char sep, char lastSep) $/;"	f
repeatMaskOutStaticLoad	lib/repMask.c	/^void repeatMaskOutStaticLoad(char **row, struct repeatMaskOut *ret)$/;"	f
repeatMaskOutTabOut	inc/repMask.h	49;"	d
repeats	hg/inc/putaInfo.h	/^    unsigned repeats[2];	\/* (cds) has repeat inserted *\/$/;"	m	struct:putaInfo
repeatsPercent	hg/inc/cnpSharp.h	/^    float repeatsPercent;	\/* 0 to 1 *\/$/;"	m	struct:cnpSharp
replSample	hg/inc/gwasCatalog.h	/^    char *replSample;	\/* Replication sample size *\/$/;"	m	struct:gwasCatalog
replaceChars	lib/common.c	/^char *replaceChars(char *string, char *old, char *new)$/;"	f
replaceOrAdd	hg/lib/grp.c	/^void replaceOrAdd(struct grp **pList, struct grp *newone)$/;"	f
replaceRegEx	hg/lib/jsHelper.c	/^char *replaceRegEx(char *str, char *replace, char *regEx, int flags)$/;"	f
replaceStr	hg/lib/jksql.c	/^static void replaceStr(char **str, char *val)$/;"	f	file:
replaceStr	hg/lib/trackDbCustom.c	/^static void replaceStr(char **varPtr, char *val)$/;"	f	file:
replaceString	hg/lib/pgSnp.c	/^char *replaceString(char *old, int from, int to, char *rep)$/;"	f
replacement	hg/inc/gbMiscDiff.h	/^    char *replacement;	\/* replace *\/$/;"	m	struct:gbMiscDiff
replicate	hg/lib/hgExp.c	/^static void replicate(char *s, int repCount, int *reps)$/;"	f	file:
reportTargetStrand	inc/genoFind.h	/^    boolean reportTargetStrand; \/* Report target as well as query strand? *\/$/;"	m	struct:gfOutput
reprefixString	hg/lib/trackHub.c	/^static void reprefixString(char **pString, char *prefix)$/;"	f	file:
required	inc/dtdParse.h	/^    boolean required;		\/* True if required. *\/$/;"	m	struct:dtdAttribute
requiredSetting	hg/lib/trackHub.c	/^static char *requiredSetting(struct trackHub *hub, struct trackHubGenome *genome,$/;"	f	file:
resend	inc/rudp.h	/^    boolean resend;     \/* TRUE if the packet is a re-send *\/$/;"	m	struct:rudp
resendCount	inc/rudp.h	/^    int resendCount;	\/* Number of resends. *\/$/;"	m	struct:rudp
reserved	hg/inc/bed12Source.h	/^    unsigned reserved;	\/* Used as itemRgb as of 2004-11-22 *\/$/;"	m	struct:bed12Source
reserved	hg/inc/bed12wSeq.h	/^    unsigned reserved;	\/* Used as itemRgb as of 2004-11-22 *\/$/;"	m	struct:bed12wSeq
reserved	hg/inc/bedDetail.h	/^    unsigned reserved;	\/* Used as itemRgb as of 2004-11-22 *\/$/;"	m	struct:bedDetail
reserved	hg/inc/cartDb.h	/^    int reserved;	\/* Reserved, currently always zero. *\/$/;"	m	struct:cartDb
reserved	hg/inc/mammalPsg.h	/^    unsigned reserved;	\/* Used as itemRgb as of 2004-11-22 *\/$/;"	m	struct:mammalPsg
reserved	hg/inc/pseudoGeneLink.h	/^    unsigned reserved;	\/* Always zero for now *\/$/;"	m	struct:pseudoGeneLink
reserved	hg/inc/retroMrnaInfo.h	/^    unsigned reserved;	\/* Always zero for now *\/$/;"	m	struct:retroMrnaInfo
reserved	hg/inc/ucscRetroInfo.h	/^    unsigned reserved;	\/* Always zero for now *\/$/;"	m	struct:ucscRetroInfo
reserved	hg/inc/zdobnovSynt.h	/^    unsigned reserved;	\/* Always zero for now *\/$/;"	m	struct:zdobnovSynt
reserved	inc/bbiFile.h	/^    bits32 reserved;			\/* Zero for now. *\/$/;"	m	struct:bbiZoomLevel
reserved	inc/bwgInternal.h	/^    UBYTE reserved;	\/* Always zero for now. *\/$/;"	m	struct:bwgSectionHead
reserved	inc/itsa.h	/^    bits64 reserved[11];\/* All zeroes for now. *\/$/;"	m	struct:itsaFileHeader
reserved	inc/linefile.h	/^    int reserved;		\/* Reserved (zero for now). *\/$/;"	m	struct:lineFile
reserved	inc/splix.h	/^    bits64 reserved[11];\/* All zeroes for now. *\/$/;"	m	struct:splixFileHeader
reserved	inc/sufa.h	/^    bits64 reserved[11];\/* All zeroes for now. *\/$/;"	m	struct:sufaFileHeader
reserved	inc/sufx.h	/^    bits64 reserved[11];\/* All zeroes for now. *\/$/;"	m	struct:sufxFileHeader
reserved	inc/twoBit.h	/^    bits32 reserved;		\/* Reserved for future expansion. *\/$/;"	m	struct:twoBit
reserved	inc/twoBit.h	/^    bits32 reserved;	\/* Reserved, always zero for now. *\/$/;"	m	struct:twoBitFile
reserved	lib/gifcodes.h	/^	unsigned char reserved;$/;"	m	struct:gif_header
reserved1	hg/inc/genomeRangeTreeFile.h	/^    bits32 reserved1;$/;"	m	struct:genomeRangeTreeFile
reserved1	inc/rudp.h	/^    bits8 reserved1;	\/* Reserved, always zero for now. *\/$/;"	m	struct:rudpHeader
reserved2	hg/inc/genomeRangeTreeFile.h	/^    bits32 reserved2;$/;"	m	struct:genomeRangeTreeFile
reserved2	inc/rudp.h	/^    bits8 reserved2;	\/* Reserved, always zero for now. *\/$/;"	m	struct:rudpHeader
reserved3	inc/rudp.h	/^    bits8 reserved3;	\/* Reserved, always zero for now. *\/$/;"	m	struct:rudpHeader
resetStats	hg/lib/wigDataStream.c	/^static void resetStats(float *lowerLimit, float *upperLimit, double *sumData,$/;"	f	file:
resetStats	hg/lib/wiggleUtils.c	/^static void resetStats(struct wigStatsAcc *wsa)$/;"	f	file:
reshapedComposite	hg/inc/trackDb.h	/^    boolean reshapedComposite; \/\/ hgTracks should not "reshape" composites more than once.$/;"	m	struct:tdbExtras
resolveAnn	lib/gff3.c	/^static void resolveAnn(struct gff3Ann *g3a)$/;"	f	file:
resolveAnns	lib/gff3.c	/^static void resolveAnns(struct gff3File *g3f)$/;"	f	file:
resolveFile	lib/gff3.c	/^static void resolveFile(struct gff3File *g3f)$/;"	f	file:
resolveRef	lib/gff3.c	/^static struct gff3Ann *resolveRef(struct gff3Ann *g3a, char *id, char *attr)$/;"	f	file:
resolveRefs	lib/gff3.c	/^static struct gff3AnnRef *resolveRefs(struct gff3Ann *g3a, struct slName *ids, char *attr)$/;"	f	file:
respEval	hg/inc/ispyTables.h	/^struct respEval$/;"	s
respEvalCommaIn	hg/lib/ispyTables.c	/^struct respEval *respEvalCommaIn(char **pS, struct respEval *ret)$/;"	f
respEvalCommaOut	hg/inc/ispyTables.h	590;"	d
respEvalFree	hg/lib/ispyTables.c	/^void respEvalFree(struct respEval **pEl)$/;"	f
respEvalFreeList	hg/lib/ispyTables.c	/^void respEvalFreeList(struct respEval **pList)$/;"	f
respEvalLoadAll	hg/lib/ispyTables.c	/^struct respEval *respEvalLoadAll(char *fileName) $/;"	f
respEvalLoadAllByChar	hg/lib/ispyTables.c	/^struct respEval *respEvalLoadAllByChar(char *fileName, char chopper) $/;"	f
respEvalLoadAllByTab	hg/inc/ispyTables.h	543;"	d
respEvalLoadByQuery	hg/lib/ispyTables.c	/^struct respEval *respEvalLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
respEvalLoadWithNull	hg/lib/ispyTables.c	/^struct respEval *respEvalLoadWithNull(char **row)$/;"	f
respEvalOutput	hg/lib/ispyTables.c	/^void respEvalOutput(struct respEval *el, FILE *f, char sep, char lastSep) $/;"	f
respEvalSaveToDb	hg/lib/ispyTables.c	/^void respEvalSaveToDb(struct sqlConnection *conn, struct respEval *el, char *tableName, int updateSize)$/;"	f
respEvalSaveToDbEscaped	hg/lib/ispyTables.c	/^void respEvalSaveToDbEscaped(struct sqlConnection *conn, struct respEval *el, char *tableName, int updateSize)$/;"	f
respEvalStaticLoadWithNull	hg/lib/ispyTables.c	/^void respEvalStaticLoadWithNull(char **row, struct respEval *ret)$/;"	f
respEvalTabOut	hg/inc/ispyTables.h	587;"	d
rest	inc/bigBed.h	/^    char *rest;			\/* Rest of line. May be NULL*\/$/;"	m	struct:bigBedInterval
rest	inc/bigBed.h	/^    char *rest;			\/* The rest of the bed. *\/$/;"	m	struct:ppBed
restartExpCell	hg/lib/hgExp.c	/^static void restartExpCell()$/;"	f	file:
restrictCount	hg/inc/trackDb.h	/^    int restrictCount;	\/* Number of chromosomes this is on (0=all though!) *\/$/;"	m	struct:trackDb
restrictList	hg/inc/trackDb.h	/^    char **restrictList;	\/* List of chromosomes this is on *\/$/;"	m	struct:trackDb
restructure	lib/rbTree.c	/^static struct rbTreeNode *restructure(struct rbTree *t, int tos, $/;"	f	file:
result	hg/lib/jksql.c	/^    MYSQL_RES *result;			\/* Result. *\/$/;"	m	struct:sqlResult	file:
resultList	hg/lib/jksql.c	/^    struct dlList *resultList;	    \/* Any open results. *\/$/;"	m	struct:sqlConnection	typeref:struct:sqlConnection::dlList	file:
resultPath	hg/inc/snpExceptions.h	/^    char *resultPath;	\/* path for results file *\/$/;"	m	struct:snpExceptions
retainedIntron	hg/inc/txInfo.h	/^    unsigned char retainedIntron;	\/* True if has a retained intron compared to overlapping transcripts *\/$/;"	m	struct:txInfo
retrieveOffset	lib/snof.c	/^static long retrieveOffset(char *item, int itemSize)$/;"	f	file:
retroExonCount	hg/inc/retroMrnaInfo.h	/^    int retroExonCount;	\/* number of exons in retroGene col13 *\/$/;"	m	struct:retroMrnaInfo
retroExonCount	hg/inc/ucscRetroInfo.h	/^    int retroExonCount;	\/* number of exons in retroGene col13 *\/$/;"	m	struct:ucscRetroInfo
retroMrnaInfo	hg/inc/retroMrnaInfo.h	/^struct retroMrnaInfo$/;"	s
retroMrnaInfo56Load	hg/lib/retroMrnaInfo.c	/^struct retroMrnaInfo *retroMrnaInfo56Load(char **row)$/;"	f
retroMrnaInfoCommaIn	hg/lib/retroMrnaInfo.c	/^struct retroMrnaInfo *retroMrnaInfoCommaIn(char **pS, struct retroMrnaInfo *ret)$/;"	f
retroMrnaInfoCommaOut	hg/inc/retroMrnaInfo.h	137;"	d
retroMrnaInfoFree	hg/lib/retroMrnaInfo.c	/^void retroMrnaInfoFree(struct retroMrnaInfo **pEl)$/;"	f
retroMrnaInfoFreeList	hg/lib/retroMrnaInfo.c	/^void retroMrnaInfoFreeList(struct retroMrnaInfo **pList)$/;"	f
retroMrnaInfoLoad	hg/lib/retroMrnaInfo.c	/^struct retroMrnaInfo *retroMrnaInfoLoad(char **row)$/;"	f
retroMrnaInfoLoadAll	hg/lib/retroMrnaInfo.c	/^struct retroMrnaInfo *retroMrnaInfoLoadAll(char *fileName) $/;"	f
retroMrnaInfoLoadAllByChar	hg/lib/retroMrnaInfo.c	/^struct retroMrnaInfo *retroMrnaInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
retroMrnaInfoLoadAllByTab	hg/inc/retroMrnaInfo.h	90;"	d
retroMrnaInfoLoadByQuery	hg/lib/retroMrnaInfo.c	/^struct retroMrnaInfo *retroMrnaInfoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
retroMrnaInfoOutput	hg/lib/retroMrnaInfo.c	/^void retroMrnaInfoOutput(struct retroMrnaInfo *el, FILE *f, char sep, char lastSep) $/;"	f
retroMrnaInfoQuery	hg/lib/retroMrnaInfo.c	/^struct retroMrnaInfo *retroMrnaInfoQuery(struct sqlConnection *conn,$/;"	f
retroMrnaInfoSaveToDb	hg/lib/retroMrnaInfo.c	/^void retroMrnaInfoSaveToDb(struct sqlConnection *conn, struct retroMrnaInfo *el, char *tableName, int updateSize)$/;"	f
retroMrnaInfoSaveToDbEscaped	hg/lib/retroMrnaInfo.c	/^void retroMrnaInfoSaveToDbEscaped(struct sqlConnection *conn, struct retroMrnaInfo *el, char *tableName, int updateSize)$/;"	f
retroMrnaInfoTabOut	hg/inc/retroMrnaInfo.h	134;"	d
returnPreview	hg/lib/chromGraphFactory.c	/^static void returnPreview(struct customPp *cpp, struct slName **pList)$/;"	f	file:
returnStats	hg/lib/wiggleUtils.c	/^static void returnStats(struct wigStatsAcc *wsa, struct wiggleStats **wsList,$/;"	f	file:
reuse	inc/linefile.h	/^    bool reuse;			\/* Set if reusing input. *\/$/;"	m	struct:lineFile
reuse	inc/tokenizer.h	/^    bool reuse;	         \/* True if want to reuse this token. *\/$/;"	m	struct:tokenizer
reusedLines	hg/inc/customPp.h	/^    struct slName *reusedLines;  \/* Lines pushed back by customPpReuse. *\/$/;"	m	struct:customPp	typeref:struct:customPp::slName
revSignalPos	hg/inc/estOrientInfo.h	/^    short revSignalPos;	\/* PolyA signal position on reverse strand if any *\/$/;"	m	struct:estOrientInfo
revSizePolyA	hg/inc/estOrientInfo.h	/^    short revSizePolyA;	\/* Number of trailing A's on reverse strand *\/$/;"	m	struct:estOrientInfo
reverse	hg/inc/fileUi.h	/^    boolean *reverse;        \/\/ Direction of sort for array$/;"	m	struct:fileDb
reverseBytes	lib/common.c	/^void reverseBytes(char *bytes, long length)$/;"	f
reverseComplement	lib/dnautil.c	/^void reverseComplement(DNA *dna, long length)$/;"	f
reverseDoubles	lib/common.c	/^void reverseDoubles(double *a, int length)$/;"	f
reverseFold	lib/rnautil.c	/^void reverseFold(char *s)$/;"	f
reverseIntRange	lib/dnautil.c	/^void reverseIntRange(int *pStart, int *pEnd, int size)$/;"	f
reverseInts	lib/common.c	/^void reverseInts(int *a, int length)$/;"	f
reverseOffset	lib/dnautil.c	/^long reverseOffset(long offset, long arraySize)$/;"	f
reversePrimer	hg/inc/dbRIP.h	/^    char *reversePrimer;	\/* reverse Primer *\/$/;"	m	struct:dbRIP
reversePrimer	hg/inc/vntr.h	/^    char *reversePrimer;	\/* Reverse PCR primer sequence (or Design_Failed) *\/$/;"	m	struct:vntr
reverseRangeList	hg/lib/liftOver.c	/^static struct liftRange *reverseRangeList(struct liftRange *rangeList, int chromSize)$/;"	f	file:
reverseStrings	lib/common.c	/^void reverseStrings(char **a, int length)$/;"	f
reverseUnsigned	lib/common.c	/^void reverseUnsigned(unsigned *a, int length)$/;"	f
reverseUnsignedRange	lib/dnautil.c	/^void reverseUnsignedRange(unsigned *pStart, unsigned *pEnd, int size)$/;"	f
rfamAcc	hg/inc/kgXref.h	/^    char *rfamAcc;	\/* Rfam accession number *\/$/;"	m	struct:kgXref
rgbColor	inc/memgfx.h	/^struct rgbColor$/;"	s
rgdMapped	hg/inc/hgnc.h	/^    char *rgdMapped;	\/* Rat genome database ID (mapped data) *\/$/;"	m	struct:hgnc
rgdQtl	hg/inc/rgdQtl.h	/^struct rgdQtl$/;"	s
rgdQtlCommaIn	hg/lib/rgdQtl.c	/^struct rgdQtl *rgdQtlCommaIn(char **pS, struct rgdQtl *ret)$/;"	f
rgdQtlCommaOut	hg/inc/rgdQtl.h	59;"	d
rgdQtlFree	hg/lib/rgdQtl.c	/^void rgdQtlFree(struct rgdQtl **pEl)$/;"	f
rgdQtlFreeList	hg/lib/rgdQtl.c	/^void rgdQtlFreeList(struct rgdQtl **pList)$/;"	f
rgdQtlLoad	hg/lib/rgdQtl.c	/^struct rgdQtl *rgdQtlLoad(char **row)$/;"	f
rgdQtlLoadAll	hg/lib/rgdQtl.c	/^struct rgdQtl *rgdQtlLoadAll(char *fileName) $/;"	f
rgdQtlLoadAllByChar	hg/lib/rgdQtl.c	/^struct rgdQtl *rgdQtlLoadAllByChar(char *fileName, char chopper) $/;"	f
rgdQtlLoadAllByTab	hg/inc/rgdQtl.h	37;"	d
rgdQtlOutput	hg/lib/rgdQtl.c	/^void rgdQtlOutput(struct rgdQtl *el, FILE *f, char sep, char lastSep) $/;"	f
rgdQtlStaticLoad	hg/lib/rgdQtl.c	/^void rgdQtlStaticLoad(char **row, struct rgdQtl *ret)$/;"	f
rgdQtlTabOut	hg/inc/rgdQtl.h	56;"	d
rgt_ofst	lib/gemfont.h	/^WORD	rgt_ofst;$/;"	m	struct:font_hdr
rhChr	hg/inc/stsInfoMouseNew.h	/^    char *rhChr;	\/* Chromosome in Genetic map *\/$/;"	m	struct:stsInfoMouseNew
rhChr	hg/inc/stsInfoRat.h	/^    char *rhChr;	\/* Chromosome in Genetic map *\/$/;"	m	struct:stsInfoRat
rhChrom	hg/inc/mapSts.h	/^    char *rhChrom;	\/* Chromosome number from the RH map - 0 if there is none *\/$/;"	m	struct:mapSts
rhChrom	hg/inc/stsMapMouseNew.h	/^    char *rhChrom;	\/* Chromosome (no chr) from RH map or 0 if none *\/$/;"	m	struct:stsMapMouseNew
rhChrom	hg/inc/stsMapRat.h	/^    char *rhChrom;	\/* Chromosome (no chr) from RH map or 0 if none *\/$/;"	m	struct:stsMapRat
rhGeneticPos	hg/inc/stsInfoMouseNew.h	/^    float rhGeneticPos;	\/* Position in Genetic map. *\/$/;"	m	struct:stsInfoMouseNew
rhGeneticPos	hg/inc/stsInfoRat.h	/^    float rhGeneticPos;	\/* Position in Genetic map. *\/$/;"	m	struct:stsInfoRat
rhLod	hg/inc/stsMapMouseNew.h	/^    float rhLod;	\/* Lod score of RH map *\/$/;"	m	struct:stsMapMouseNew
rhLod	hg/inc/stsMapRat.h	/^    float rhLod;	\/* Lod score of RH map *\/$/;"	m	struct:stsMapRat
rhMapInfo	hg/inc/rhMapInfo.h	/^struct rhMapInfo$/;"	s
rhMapInfoCommaIn	hg/lib/rhMapInfo.c	/^struct rhMapInfo *rhMapInfoCommaIn(char **pS, struct rhMapInfo *ret)$/;"	f
rhMapInfoCommaOut	hg/inc/rhMapInfo.h	64;"	d
rhMapInfoFree	hg/lib/rhMapInfo.c	/^void rhMapInfoFree(struct rhMapInfo **pEl)$/;"	f
rhMapInfoFreeList	hg/lib/rhMapInfo.c	/^void rhMapInfoFreeList(struct rhMapInfo **pList)$/;"	f
rhMapInfoLoad	hg/lib/rhMapInfo.c	/^struct rhMapInfo *rhMapInfoLoad(char **row)$/;"	f
rhMapInfoLoadAll	hg/lib/rhMapInfo.c	/^struct rhMapInfo *rhMapInfoLoadAll(char *fileName) $/;"	f
rhMapInfoLoadAllByChar	hg/lib/rhMapInfo.c	/^struct rhMapInfo *rhMapInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
rhMapInfoLoadAllByTab	hg/inc/rhMapInfo.h	42;"	d
rhMapInfoOutput	hg/lib/rhMapInfo.c	/^void rhMapInfoOutput(struct rhMapInfo *el, FILE *f, char sep, char lastSep) $/;"	f
rhMapInfoStaticLoad	hg/lib/rhMapInfo.c	/^void rhMapInfoStaticLoad(char **row, struct rhMapInfo *ret)$/;"	f
rhMapInfoTabOut	hg/inc/rhMapInfo.h	61;"	d
rhMapZfishInfo	hg/inc/rhMapZfishInfo.h	/^struct rhMapZfishInfo$/;"	s
rhMapZfishInfoCommaIn	hg/lib/rhMapZfishInfo.c	/^struct rhMapZfishInfo *rhMapZfishInfoCommaIn(char **pS, struct rhMapZfishInfo *ret)$/;"	f
rhMapZfishInfoCommaOut	hg/inc/rhMapZfishInfo.h	64;"	d
rhMapZfishInfoFree	hg/lib/rhMapZfishInfo.c	/^void rhMapZfishInfoFree(struct rhMapZfishInfo **pEl)$/;"	f
rhMapZfishInfoFreeList	hg/lib/rhMapZfishInfo.c	/^void rhMapZfishInfoFreeList(struct rhMapZfishInfo **pList)$/;"	f
rhMapZfishInfoLoad	hg/lib/rhMapZfishInfo.c	/^struct rhMapZfishInfo *rhMapZfishInfoLoad(char **row)$/;"	f
rhMapZfishInfoLoadAll	hg/lib/rhMapZfishInfo.c	/^struct rhMapZfishInfo *rhMapZfishInfoLoadAll(char *fileName) $/;"	f
rhMapZfishInfoLoadAllByChar	hg/lib/rhMapZfishInfo.c	/^struct rhMapZfishInfo *rhMapZfishInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
rhMapZfishInfoLoadAllByTab	hg/inc/rhMapZfishInfo.h	42;"	d
rhMapZfishInfoOutput	hg/lib/rhMapZfishInfo.c	/^void rhMapZfishInfoOutput(struct rhMapZfishInfo *el, FILE *f, char sep, char lastSep) $/;"	f
rhMapZfishInfoStaticLoad	hg/lib/rhMapZfishInfo.c	/^void rhMapZfishInfoStaticLoad(char **row, struct rhMapZfishInfo *ret)$/;"	f
rhMapZfishInfoTabOut	hg/inc/rhMapZfishInfo.h	61;"	d
rhName	hg/inc/stsInfoMouseNew.h	/^    char *rhName;	\/* WhiteHead_RH map *\/$/;"	m	struct:stsInfoMouseNew
rhName	hg/inc/stsInfoRat.h	/^    char *rhName;	\/* Name in RH map *\/$/;"	m	struct:stsInfoRat
rhPos	hg/inc/stsMapMouseNew.h	/^    float rhPos;	\/* Position on rh map *\/$/;"	m	struct:stsMapMouseNew
rhPos	hg/inc/stsMapRat.h	/^    float rhPos;	\/* Position on rh map *\/$/;"	m	struct:stsMapRat
rhesusAllele	hg/inc/hapmapPrimateAlleles.h	/^    char *rhesusAllele;	\/* A, C, G, T, a, c, g, t, or . *\/$/;"	m	struct:hapmapPrimateAlleles
rhesusChrom	hg/inc/hapmapPrimateAlleles.h	/^    char *rhesusChrom;	\/* Rhesus Chromosome *\/$/;"	m	struct:hapmapPrimateAlleles
rhesusPos	hg/inc/hapmapPrimateAlleles.h	/^    unsigned rhesusPos;	\/* End position in rhesusChrom *\/$/;"	m	struct:hapmapPrimateAlleles
rhesusQual	hg/inc/hapmapPrimateAlleles.h	/^    unsigned rhesusQual;	\/* Rhesus quality score *\/$/;"	m	struct:hapmapPrimateAlleles
rhesusStrand	hg/inc/hapmapPrimateAlleles.h	/^    char rhesusStrand;	\/* + or - or . *\/$/;"	m	struct:hapmapPrimateAlleles
right	hg/inc/stanMad.h	/^    int right;	\/* The right coordinate of the spot. *\/$/;"	m	struct:stanMad
right	inc/fuzzyFind.h	/^    struct ffAli *right;$/;"	m	struct:ffAli	typeref:struct:ffAli::ffAli
right	inc/hacTree.h	/^    struct hacTree *right;      \/\/ Right child, NULL for leaf node$/;"	m	struct:hacTree	typeref:struct:hacTree::hacTree
right	inc/rbTree.h	/^    struct rbTreeNode *left, *right;		\/* Children. *\/$/;"	m	struct:rbTreeNode	typeref:struct:rbTreeNode::
right	jkOwnLib/fuzzyFind.c	/^    struct protoGene *right;$/;"	m	struct:protoGene	typeref:struct:protoGene::protoGene	file:
right	lib/keys.c	/^    void *right;$/;"	m	struct:exp	file:
rightFlank	hg/inc/snpFasta.h	/^    char *rightFlank;	\/* Right flanking sequence *\/$/;"	m	struct:snpFasta
rightGood	lib/cda.c	/^static UBYTE rightGood(struct ffAli *ali)$/;"	f	file:
rightJoin	inc/annoFilter.h	/^    boolean rightJoin;		\/\/ A la SQL: if this filter fails, discard primary row.$/;"	m	struct:annoFilter
rightJoinFail	inc/annoRow.h	/^    boolean rightJoinFail;$/;"	m	struct:annoRow
rightLabel	hg/lib/genoLay.c	/^static void rightLabel(struct hvGfx *hvg, struct genoLay *gl,$/;"	f	file:
rightLabelWidth	hg/inc/genoLay.h	/^    int leftLabelWidth, rightLabelWidth;\/* Pixels for left\/right labels *\/$/;"	m	struct:genoLay
rightLen	inc/maf.h	/^    int rightLen;     \/* length related information for the following alignment for the species *\/$/;"	m	struct:mafComp
rightList	hg/inc/genoLay.h	/^    struct slRef *rightList;		\/* Right chromosomes. *\/$/;"	m	struct:genoLay	typeref:struct:genoLay::slRef
rightMask	lib/bits.c	/^static Bits rightMask[8] = {0x80, 0xC0, 0xE0, 0xF0, 0xF8, 0xFC, 0xFE, 0xFF,};$/;"	v	file:
rightNextMatch	jkOwnLib/fuzzyFind.c	/^static boolean rightNextMatch(struct ffAli *ali, DNA *ns, DNA *ne, DNA *hs, DNA *he, $/;"	f	file:
rightPrimer	hg/inc/bacCloneXRef.h	/^    char *rightPrimer;	\/* STS 3' primer sequence *\/$/;"	m	struct:bacCloneXRef
rightPrimer	hg/inc/rhMapInfo.h	/^    char *rightPrimer;	\/* Reverse primer sequence *\/$/;"	m	struct:rhMapInfo
rightPrimer	hg/inc/rhMapZfishInfo.h	/^    char *rightPrimer;	\/* Reverse primer sequence *\/$/;"	m	struct:rhMapZfishInfo
rightPrimer	hg/inc/stsInfo.h	/^    char *rightPrimer;	\/* 3' primer sequence *\/$/;"	m	struct:stsInfo
rightPrimer	hg/inc/stsInfo2.h	/^    char *rightPrimer;	\/* 3' primer sequence *\/$/;"	m	struct:stsInfo2
rightStatus	hg/inc/mafSummary.h	/^    char rightStatus[2];	\/* Gap\/break annotation for following block *\/$/;"	m	struct:mafSummary
rightStatus	inc/maf.h	/^    char rightStatus; \/* the syntenic status of the alignment after us vis a vis ourselves *\/$/;"	m	struct:mafComp
rikenAccession	hg/inc/riken.h	/^    struct rikenAccession *rikenAccession;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenAccession
rikenAccession	hg/inc/riken.h	/^struct rikenAccession$/;"	s
rikenAccessionLoad	hg/lib/riken.c	/^struct rikenAccession *rikenAccessionLoad(char *fileName)$/;"	f
rikenAccessionSave	hg/lib/riken.c	/^void rikenAccessionSave(struct rikenAccession *obj, int indent, FILE *f)$/;"	f
rikenAltid	hg/inc/riken.h	/^    struct rikenAltid *rikenAltid;	\/** Possibly empty list. **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenAltid
rikenAltid	hg/inc/riken.h	/^struct rikenAltid$/;"	s
rikenAltidLoad	hg/lib/riken.c	/^struct rikenAltid *rikenAltidLoad(char *fileName)$/;"	f
rikenAltidSave	hg/lib/riken.c	/^void rikenAltidSave(struct rikenAltid *obj, int indent, FILE *f)$/;"	f
rikenAnnotation	hg/inc/riken.h	/^    struct rikenAnnotation *rikenAnnotation;	\/** Possibly empty list. **\/$/;"	m	struct:rikenAnnotations	typeref:struct:rikenAnnotations::rikenAnnotation
rikenAnnotation	hg/inc/riken.h	/^struct rikenAnnotation$/;"	s
rikenAnnotationLoad	hg/lib/riken.c	/^struct rikenAnnotation *rikenAnnotationLoad(char *fileName)$/;"	f
rikenAnnotationSave	hg/lib/riken.c	/^void rikenAnnotationSave(struct rikenAnnotation *obj, int indent, FILE *f)$/;"	f
rikenAnnotations	hg/inc/riken.h	/^    struct rikenAnnotations *rikenAnnotations;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenAnnotations
rikenAnnotations	hg/inc/riken.h	/^struct rikenAnnotations$/;"	s
rikenAnnotationsLoad	hg/lib/riken.c	/^struct rikenAnnotations *rikenAnnotationsLoad(char *fileName)$/;"	f
rikenAnnotationsSave	hg/lib/riken.c	/^void rikenAnnotationsSave(struct rikenAnnotations *obj, int indent, FILE *f)$/;"	f
rikenAnnotator	hg/inc/riken.h	/^    struct rikenAnnotator *rikenAnnotator;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenAnnotator
rikenAnnotator	hg/inc/riken.h	/^struct rikenAnnotator$/;"	s
rikenAnnotatorLoad	hg/lib/riken.c	/^struct rikenAnnotator *rikenAnnotatorLoad(char *fileName)$/;"	f
rikenAnnotatorSave	hg/lib/riken.c	/^void rikenAnnotatorSave(struct rikenAnnotator *obj, int indent, FILE *f)$/;"	f
rikenAnntext	hg/inc/riken.h	/^    struct rikenAnntext *rikenAnntext;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenAnnotation	typeref:struct:rikenAnnotation::rikenAnntext
rikenAnntext	hg/inc/riken.h	/^struct rikenAnntext$/;"	s
rikenAnntextLoad	hg/lib/riken.c	/^struct rikenAnntext *rikenAnntextLoad(char *fileName)$/;"	f
rikenAnntextSave	hg/lib/riken.c	/^void rikenAnntextSave(struct rikenAnntext *obj, int indent, FILE *f)$/;"	f
rikenBest	hg/inc/rikenBest.h	/^struct rikenBest$/;"	s
rikenBestCommaIn	hg/lib/rikenBest.c	/^struct rikenBest *rikenBestCommaIn(char **pS, struct rikenBest *ret)$/;"	f
rikenBestCommaOut	hg/inc/rikenBest.h	58;"	d
rikenBestFree	hg/lib/rikenBest.c	/^void rikenBestFree(struct rikenBest **pEl)$/;"	f
rikenBestFreeList	hg/lib/rikenBest.c	/^void rikenBestFreeList(struct rikenBest **pList)$/;"	f
rikenBestLoad	hg/lib/rikenBest.c	/^struct rikenBest *rikenBestLoad(char **row)$/;"	f
rikenBestLoadAll	hg/lib/rikenBest.c	/^struct rikenBest *rikenBestLoadAll(char *fileName) $/;"	f
rikenBestLoadWhere	hg/lib/rikenBest.c	/^struct rikenBest *rikenBestLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
rikenBestOutput	hg/lib/rikenBest.c	/^void rikenBestOutput(struct rikenBest *el, FILE *f, char sep, char lastSep) $/;"	f
rikenBestStaticLoad	hg/lib/rikenBest.c	/^void rikenBestStaticLoad(char **row, struct rikenBest *ret)$/;"	f
rikenBestTabOut	hg/inc/rikenBest.h	55;"	d
rikenCloneid	hg/inc/riken.h	/^    struct rikenCloneid *rikenCloneid;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenCloneid
rikenCloneid	hg/inc/riken.h	/^struct rikenCloneid$/;"	s
rikenCloneidLoad	hg/lib/riken.c	/^struct rikenCloneid *rikenCloneidLoad(char *fileName)$/;"	f
rikenCloneidSave	hg/lib/riken.c	/^void rikenCloneidSave(struct rikenCloneid *obj, int indent, FILE *f)$/;"	f
rikenCluster	hg/inc/riken.h	/^    struct rikenCluster *rikenCluster;	\/** Possibly empty list. **\/$/;"	m	struct:rikenMaxmlClusters	typeref:struct:rikenMaxmlClusters::rikenCluster
rikenCluster	hg/inc/riken.h	/^struct rikenCluster$/;"	s
rikenClusterLoad	hg/lib/riken.c	/^struct rikenCluster *rikenClusterLoad(char *fileName)$/;"	f
rikenClusterSave	hg/lib/riken.c	/^void rikenClusterSave(struct rikenCluster *obj, int indent, FILE *f)$/;"	f
rikenComment	hg/inc/riken.h	/^    struct rikenComment *rikenComment;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenComment
rikenComment	hg/inc/riken.h	/^struct rikenComment$/;"	s
rikenCommentLoad	hg/lib/riken.c	/^struct rikenComment *rikenCommentLoad(char *fileName)$/;"	f
rikenCommentSave	hg/lib/riken.c	/^void rikenCommentSave(struct rikenComment *obj, int indent, FILE *f)$/;"	f
rikenCount	hg/inc/rikenBest.h	/^    int rikenCount;	\/* Number of Riken mRNAs in cluster *\/$/;"	m	struct:rikenBest
rikenCount	hg/inc/rikenCluster.h	/^    unsigned rikenCount;	\/* Number of Riken mrnas in cluster *\/$/;"	m	struct:rikenUcscCluster
rikenCount	hg/inc/rnaGroup.h	/^    unsigned rikenCount;	\/* Number of Riken mrnas in cluster *\/$/;"	m	struct:rnaGroup
rikenDatasrc	hg/inc/riken.h	/^    struct rikenDatasrc *rikenDatasrc;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenAnnotation	typeref:struct:rikenAnnotation::rikenDatasrc
rikenDatasrc	hg/inc/riken.h	/^struct rikenDatasrc$/;"	s
rikenDatasrcLoad	hg/lib/riken.c	/^struct rikenDatasrc *rikenDatasrcLoad(char *fileName)$/;"	f
rikenDatasrcSave	hg/lib/riken.c	/^void rikenDatasrcSave(struct rikenDatasrc *obj, int indent, FILE *f)$/;"	f
rikenEndHandler	hg/lib/riken.c	/^void rikenEndHandler(struct xap *xp, char *name)$/;"	f
rikenEvidence	hg/inc/riken.h	/^    struct rikenEvidence *rikenEvidence;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenAnnotation	typeref:struct:rikenAnnotation::rikenEvidence
rikenEvidence	hg/inc/riken.h	/^struct rikenEvidence$/;"	s
rikenEvidenceLoad	hg/lib/riken.c	/^struct rikenEvidence *rikenEvidenceLoad(char *fileName)$/;"	f
rikenEvidenceSave	hg/lib/riken.c	/^void rikenEvidenceSave(struct rikenEvidence *obj, int indent, FILE *f)$/;"	f
rikenFantomid	hg/inc/riken.h	/^    struct rikenFantomid *rikenFantomid;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenFantomid
rikenFantomid	hg/inc/riken.h	/^    struct rikenFantomid *rikenFantomid;	\/** Single instance required. **\/$/;"	m	struct:rikenCluster	typeref:struct:rikenCluster::rikenFantomid
rikenFantomid	hg/inc/riken.h	/^struct rikenFantomid$/;"	s
rikenFantomidLoad	hg/lib/riken.c	/^struct rikenFantomid *rikenFantomidLoad(char *fileName)$/;"	f
rikenFantomidSave	hg/lib/riken.c	/^void rikenFantomidSave(struct rikenFantomid *obj, int indent, FILE *f)$/;"	f
rikenMaxmlClusters	hg/inc/riken.h	/^struct rikenMaxmlClusters$/;"	s
rikenMaxmlClustersLoad	hg/lib/riken.c	/^struct rikenMaxmlClusters *rikenMaxmlClustersLoad(char *fileName)$/;"	f
rikenMaxmlClustersSave	hg/lib/riken.c	/^void rikenMaxmlClustersSave(struct rikenMaxmlClusters *obj, int indent, FILE *f)$/;"	f
rikenMaxmlSequences	hg/inc/riken.h	/^struct rikenMaxmlSequences$/;"	s
rikenMaxmlSequencesLoad	hg/lib/riken.c	/^struct rikenMaxmlSequences *rikenMaxmlSequencesLoad(char *fileName)$/;"	f
rikenMaxmlSequencesSave	hg/lib/riken.c	/^void rikenMaxmlSequencesSave(struct rikenMaxmlSequences *obj, int indent, FILE *f)$/;"	f
rikenModifiedTime	hg/inc/riken.h	/^    struct rikenModifiedTime *rikenModifiedTime;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenModifiedTime
rikenModifiedTime	hg/inc/riken.h	/^struct rikenModifiedTime$/;"	s
rikenModifiedTimeLoad	hg/lib/riken.c	/^struct rikenModifiedTime *rikenModifiedTimeLoad(char *fileName)$/;"	f
rikenModifiedTimeSave	hg/lib/riken.c	/^void rikenModifiedTimeSave(struct rikenModifiedTime *obj, int indent, FILE *f)$/;"	f
rikenQualifier	hg/inc/riken.h	/^    struct rikenQualifier *rikenQualifier;	\/** Single instance required. **\/$/;"	m	struct:rikenAnnotation	typeref:struct:rikenAnnotation::rikenQualifier
rikenQualifier	hg/inc/riken.h	/^struct rikenQualifier$/;"	s
rikenQualifierLoad	hg/lib/riken.c	/^struct rikenQualifier *rikenQualifierLoad(char *fileName)$/;"	f
rikenQualifierSave	hg/lib/riken.c	/^void rikenQualifierSave(struct rikenQualifier *obj, int indent, FILE *f)$/;"	f
rikenRearrayid	hg/inc/riken.h	/^    struct rikenRearrayid *rikenRearrayid;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenRearrayid
rikenRearrayid	hg/inc/riken.h	/^struct rikenRearrayid$/;"	s
rikenRearrayidLoad	hg/lib/riken.c	/^struct rikenRearrayid *rikenRearrayidLoad(char *fileName)$/;"	f
rikenRearrayidSave	hg/lib/riken.c	/^void rikenRearrayidSave(struct rikenRearrayid *obj, int indent, FILE *f)$/;"	f
rikenRepresentativeSeqid	hg/inc/riken.h	/^    struct rikenRepresentativeSeqid *rikenRepresentativeSeqid;	\/** Single instance required. **\/$/;"	m	struct:rikenCluster	typeref:struct:rikenCluster::rikenRepresentativeSeqid
rikenRepresentativeSeqid	hg/inc/riken.h	/^struct rikenRepresentativeSeqid$/;"	s
rikenRepresentativeSeqidLoad	hg/lib/riken.c	/^struct rikenRepresentativeSeqid *rikenRepresentativeSeqidLoad(char *fileName)$/;"	f
rikenRepresentativeSeqidSave	hg/lib/riken.c	/^void rikenRepresentativeSeqidSave(struct rikenRepresentativeSeqid *obj, int indent, FILE *f)$/;"	f
rikenSeqid	hg/inc/riken.h	/^    struct rikenSeqid *rikenSeqid;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenSeqid
rikenSeqid	hg/inc/riken.h	/^struct rikenSeqid$/;"	s
rikenSeqidLoad	hg/lib/riken.c	/^struct rikenSeqid *rikenSeqidLoad(char *fileName)$/;"	f
rikenSeqidSave	hg/lib/riken.c	/^void rikenSeqidSave(struct rikenSeqid *obj, int indent, FILE *f)$/;"	f
rikenSequence	hg/inc/riken.h	/^    struct rikenSequence *rikenSequence;	\/** Possibly empty list. **\/$/;"	m	struct:rikenCluster	typeref:struct:rikenCluster::rikenSequence
rikenSequence	hg/inc/riken.h	/^    struct rikenSequence *rikenSequence;	\/** Possibly empty list. **\/$/;"	m	struct:rikenMaxmlSequences	typeref:struct:rikenMaxmlSequences::rikenSequence
rikenSequence	hg/inc/riken.h	/^struct rikenSequence$/;"	s
rikenSequenceLoad	hg/lib/riken.c	/^struct rikenSequence *rikenSequenceLoad(char *fileName)$/;"	f
rikenSequenceSave	hg/lib/riken.c	/^void rikenSequenceSave(struct rikenSequence *obj, int indent, FILE *f)$/;"	f
rikenSrckey	hg/inc/riken.h	/^    struct rikenSrckey *rikenSrckey;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenAnnotation	typeref:struct:rikenAnnotation::rikenSrckey
rikenSrckey	hg/inc/riken.h	/^struct rikenSrckey$/;"	s
rikenSrckeyLoad	hg/lib/riken.c	/^struct rikenSrckey *rikenSrckeyLoad(char *fileName)$/;"	f
rikenSrckeySave	hg/lib/riken.c	/^void rikenSrckeySave(struct rikenSrckey *obj, int indent, FILE *f)$/;"	f
rikenStartHandler	hg/lib/riken.c	/^void *rikenStartHandler(struct xap *xp, char *name, char **atts)$/;"	f
rikenUcscCluster	hg/inc/rikenCluster.h	/^struct rikenUcscCluster$/;"	s
rikenUcscClusterCommaIn	hg/lib/rikenCluster.c	/^struct rikenUcscCluster *rikenUcscClusterCommaIn(char **pS, struct rikenUcscCluster *ret)$/;"	f
rikenUcscClusterCommaOut	hg/inc/rikenCluster.h	57;"	d
rikenUcscClusterFree	hg/lib/rikenCluster.c	/^void rikenUcscClusterFree(struct rikenUcscCluster **pEl)$/;"	f
rikenUcscClusterFreeList	hg/lib/rikenCluster.c	/^void rikenUcscClusterFreeList(struct rikenUcscCluster **pList)$/;"	f
rikenUcscClusterLoad	hg/lib/rikenCluster.c	/^struct rikenUcscCluster *rikenUcscClusterLoad(char **row)$/;"	f
rikenUcscClusterLoadAll	hg/lib/rikenCluster.c	/^struct rikenUcscCluster *rikenUcscClusterLoadAll(char *fileName) $/;"	f
rikenUcscClusterLoadWhere	hg/lib/rikenCluster.c	/^struct rikenUcscCluster *rikenUcscClusterLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
rikenUcscClusterOutput	hg/lib/rikenCluster.c	/^void rikenUcscClusterOutput(struct rikenUcscCluster *el, FILE *f, char sep, char lastSep) $/;"	f
rikenUcscClusterTabOut	hg/inc/rikenCluster.h	54;"	d
rikenVersion	hg/inc/riken.h	/^    struct rikenVersion *rikenVersion;	\/** Optional (may be NULL). **\/$/;"	m	struct:rikenSequence	typeref:struct:rikenSequence::rikenVersion
rikenVersion	hg/inc/riken.h	/^struct rikenVersion$/;"	s
rikenVersionLoad	hg/lib/riken.c	/^struct rikenVersion *rikenVersionLoad(char *fileName)$/;"	f
rikenVersionSave	hg/lib/riken.c	/^void rikenVersionSave(struct rikenVersion *obj, int indent, FILE *f)$/;"	f
rikens	hg/inc/rikenCluster.h	/^    char **rikens;	\/* List of Riken IDs *\/$/;"	m	struct:rikenUcscCluster
rikens	hg/inc/rnaGroup.h	/^    char **rikens;	\/* List of Riken IDs *\/$/;"	m	struct:rnaGroup
riskAlFreq	hg/inc/gwasCatalog.h	/^    char *riskAlFreq;	\/* Risk Allele Frequency *\/$/;"	m	struct:gwasCatalog
riskAllele	hg/inc/gwasCatalog.h	/^    char *riskAllele;	\/* Strongest SNP-Risk Allele *\/$/;"	m	struct:gwasCatalog
rkeyEval	lib/keys.c	/^static boolean rkeyEval(struct kvt *kvt, struct exp *exp)$/;"	f	file:
rleCompress	lib/rle.c	/^int rleCompress(void *vIn, int inSize, signed char *out)$/;"	f
rleUncompress	lib/rle.c	/^void rleUncompress(signed char *in, int inSize, void *vOut, int outSize)$/;"	f
rmskOut	hg/inc/rmskOut.h	/^struct rmskOut$/;"	s
rmskOutCommaIn	hg/lib/rmskOut.c	/^struct rmskOut *rmskOutCommaIn(char **pS, struct rmskOut *ret)$/;"	f
rmskOutCommaOut	hg/inc/rmskOut.h	60;"	d
rmskOutFree	hg/lib/rmskOut.c	/^void rmskOutFree(struct rmskOut **pEl)$/;"	f
rmskOutFreeList	hg/lib/rmskOut.c	/^void rmskOutFreeList(struct rmskOut **pList)$/;"	f
rmskOutLoad	hg/lib/rmskOut.c	/^struct rmskOut *rmskOutLoad(char **row)$/;"	f
rmskOutOpenVerify	hg/lib/rmskOut.c	/^void rmskOutOpenVerify(char *fileName, struct lineFile **retFile, boolean *retEmpty)$/;"	f
rmskOutOutput	hg/lib/rmskOut.c	/^void rmskOutOutput(struct rmskOut *el, FILE *f, char sep, char lastSep) $/;"	f
rmskOutRead	hg/lib/rmskOut.c	/^struct rmskOut *rmskOutRead(char *fileName)$/;"	f
rmskOutReadNext	hg/lib/rmskOut.c	/^struct rmskOut *rmskOutReadNext(struct lineFile *lf)$/;"	f
rmskOutStaticLoad	hg/lib/rmskOut.c	/^void rmskOutStaticLoad(char **row, struct rmskOut *ret)$/;"	f
rmskOutTabOut	hg/inc/rmskOut.h	57;"	d
rmskOutWriteAllOut	hg/lib/rmskOut.c	/^void rmskOutWriteAllOut(char *fileName, struct rmskOut *rmskList)$/;"	f
rmskOutWriteHead	hg/lib/rmskOut.c	/^void rmskOutWriteHead(FILE *f)$/;"	f
rmskOutWriteOneOut	hg/lib/rmskOut.c	/^void rmskOutWriteOneOut(struct rmskOut *rmsk, FILE *f)$/;"	f
rnaDnaGapCosts	lib/gapCalc.c	/^static char *rnaDnaGapCosts = $/;"	v	file:
rnaFold	hg/inc/rnaFold.h	/^struct rnaFold$/;"	s
rnaFoldCommaIn	hg/lib/rnaFold.c	/^struct rnaFold *rnaFoldCommaIn(char **pS, struct rnaFold *ret)$/;"	f
rnaFoldCommaOut	hg/inc/rnaFold.h	58;"	d
rnaFoldFree	hg/lib/rnaFold.c	/^void rnaFoldFree(struct rnaFold **pEl)$/;"	f
rnaFoldFreeList	hg/lib/rnaFold.c	/^void rnaFoldFreeList(struct rnaFold **pList)$/;"	f
rnaFoldLoad	hg/lib/rnaFold.c	/^struct rnaFold *rnaFoldLoad(char **row)$/;"	f
rnaFoldLoadAll	hg/lib/rnaFold.c	/^struct rnaFold *rnaFoldLoadAll(char *fileName) $/;"	f
rnaFoldLoadAllByChar	hg/lib/rnaFold.c	/^struct rnaFold *rnaFoldLoadAllByChar(char *fileName, char chopper) $/;"	f
rnaFoldLoadAllByTab	hg/inc/rnaFold.h	36;"	d
rnaFoldOutput	hg/lib/rnaFold.c	/^void rnaFoldOutput(struct rnaFold *el, FILE *f, char sep, char lastSep) $/;"	f
rnaFoldStaticLoad	hg/lib/rnaFold.c	/^void rnaFoldStaticLoad(char **row, struct rnaFold *ret)$/;"	f
rnaFoldTabOut	hg/inc/rnaFold.h	55;"	d
rnaGene	hg/inc/rnaGene.h	/^struct rnaGene$/;"	s
rnaGeneCommaIn	hg/lib/rnaGene.c	/^struct rnaGene *rnaGeneCommaIn(char **pS, struct rnaGene *ret)$/;"	f
rnaGeneCommaOut	hg/inc/rnaGene.h	50;"	d
rnaGeneFree	hg/lib/rnaGene.c	/^void rnaGeneFree(struct rnaGene **pEl)$/;"	f
rnaGeneFreeList	hg/lib/rnaGene.c	/^void rnaGeneFreeList(struct rnaGene **pList)$/;"	f
rnaGeneLoad	hg/lib/rnaGene.c	/^struct rnaGene *rnaGeneLoad(char **row)$/;"	f
rnaGeneOutput	hg/lib/rnaGene.c	/^void rnaGeneOutput(struct rnaGene *el, FILE *f, char sep, char lastSep) $/;"	f
rnaGeneStaticLoad	hg/lib/rnaGene.c	/^void rnaGeneStaticLoad(char **row, struct rnaGene *ret)$/;"	f
rnaGeneTabOut	hg/inc/rnaGene.h	47;"	d
rnaGenes	hg/inc/rnaGenes.h	/^struct rnaGenes$/;"	s
rnaGenesCommaIn	hg/lib/rnaGenes.c	/^struct rnaGenes *rnaGenesCommaIn(char **pS, struct rnaGenes *ret)$/;"	f
rnaGenesCommaOut	hg/inc/rnaGenes.h	64;"	d
rnaGenesFree	hg/lib/rnaGenes.c	/^void rnaGenesFree(struct rnaGenes **pEl)$/;"	f
rnaGenesFreeList	hg/lib/rnaGenes.c	/^void rnaGenesFreeList(struct rnaGenes **pList)$/;"	f
rnaGenesLoad	hg/lib/rnaGenes.c	/^struct rnaGenes *rnaGenesLoad(char **row)$/;"	f
rnaGenesLoadAll	hg/lib/rnaGenes.c	/^struct rnaGenes *rnaGenesLoadAll(char *fileName) $/;"	f
rnaGenesLoadAllByChar	hg/lib/rnaGenes.c	/^struct rnaGenes *rnaGenesLoadAllByChar(char *fileName, char chopper) $/;"	f
rnaGenesLoadAllByTab	hg/inc/rnaGenes.h	42;"	d
rnaGenesOutput	hg/lib/rnaGenes.c	/^void rnaGenesOutput(struct rnaGenes *el, FILE *f, char sep, char lastSep) $/;"	f
rnaGenesStaticLoad	hg/lib/rnaGenes.c	/^void rnaGenesStaticLoad(char **row, struct rnaGenes *ret)$/;"	f
rnaGenesTabOut	hg/inc/rnaGenes.h	61;"	d
rnaGroup	hg/inc/rnaGroup.h	/^struct rnaGroup$/;"	s
rnaGroupCommaIn	hg/lib/rnaGroup.c	/^struct rnaGroup *rnaGroupCommaIn(char **pS, struct rnaGroup *ret)$/;"	f
rnaGroupCommaOut	hg/inc/rnaGroup.h	57;"	d
rnaGroupFree	hg/lib/rnaGroup.c	/^void rnaGroupFree(struct rnaGroup **pEl)$/;"	f
rnaGroupFreeList	hg/lib/rnaGroup.c	/^void rnaGroupFreeList(struct rnaGroup **pList)$/;"	f
rnaGroupLoad	hg/lib/rnaGroup.c	/^struct rnaGroup *rnaGroupLoad(char **row)$/;"	f
rnaGroupLoadAll	hg/lib/rnaGroup.c	/^struct rnaGroup *rnaGroupLoadAll(char *fileName) $/;"	f
rnaGroupLoadWhere	hg/lib/rnaGroup.c	/^struct rnaGroup *rnaGroupLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
rnaGroupOutput	hg/lib/rnaGroup.c	/^void rnaGroupOutput(struct rnaGroup *el, FILE *f, char sep, char lastSep) $/;"	f
rnaGroupTabOut	hg/inc/rnaGroup.h	54;"	d
rnaHybridization	hg/inc/rnaHybridization.h	/^struct rnaHybridization$/;"	s
rnaHybridizationCommaIn	hg/lib/rnaHybridization.c	/^struct rnaHybridization *rnaHybridizationCommaIn(char **pS, struct rnaHybridization *ret)$/;"	f
rnaHybridizationCommaOut	hg/inc/rnaHybridization.h	103;"	d
rnaHybridizationFree	hg/lib/rnaHybridization.c	/^void rnaHybridizationFree(struct rnaHybridization **pEl)$/;"	f
rnaHybridizationFreeList	hg/lib/rnaHybridization.c	/^void rnaHybridizationFreeList(struct rnaHybridization **pList)$/;"	f
rnaHybridizationLoad	hg/lib/rnaHybridization.c	/^struct rnaHybridization *rnaHybridizationLoad(char **row)$/;"	f
rnaHybridizationLoadAll	hg/lib/rnaHybridization.c	/^struct rnaHybridization *rnaHybridizationLoadAll(char *fileName) $/;"	f
rnaHybridizationLoadAllByChar	hg/lib/rnaHybridization.c	/^struct rnaHybridization *rnaHybridizationLoadAllByChar(char *fileName, char chopper) $/;"	f
rnaHybridizationLoadAllByTab	hg/inc/rnaHybridization.h	56;"	d
rnaHybridizationLoadByQuery	hg/lib/rnaHybridization.c	/^struct rnaHybridization *rnaHybridizationLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
rnaHybridizationOutput	hg/lib/rnaHybridization.c	/^void rnaHybridizationOutput(struct rnaHybridization *el, FILE *f, char sep, char lastSep) $/;"	f
rnaHybridizationSaveToDb	hg/lib/rnaHybridization.c	/^void rnaHybridizationSaveToDb(struct sqlConnection *conn, struct rnaHybridization *el, char *tableName, int updateSize)$/;"	f
rnaHybridizationSaveToDbEscaped	hg/lib/rnaHybridization.c	/^void rnaHybridizationSaveToDbEscaped(struct sqlConnection *conn, struct rnaHybridization *el, char *tableName, int updateSize)$/;"	f
rnaHybridizationStaticLoad	hg/lib/rnaHybridization.c	/^void rnaHybridizationStaticLoad(char **row, struct rnaHybridization *ret)$/;"	f
rnaHybridizationTabOut	hg/inc/rnaHybridization.h	100;"	d
rnaPLFold	hg/inc/rnaPLFold.h	/^struct rnaPLFold$/;"	s
rnaPLFoldCommaIn	hg/lib/rnaPLFold.c	/^struct rnaPLFold *rnaPLFoldCommaIn(char **pS, struct rnaPLFold *ret)$/;"	f
rnaPLFoldCommaOut	hg/inc/rnaPLFold.h	59;"	d
rnaPLFoldFree	hg/lib/rnaPLFold.c	/^void rnaPLFoldFree(struct rnaPLFold **pEl)$/;"	f
rnaPLFoldFreeList	hg/lib/rnaPLFold.c	/^void rnaPLFoldFreeList(struct rnaPLFold **pList)$/;"	f
rnaPLFoldLoad	hg/lib/rnaPLFold.c	/^struct rnaPLFold *rnaPLFoldLoad(char **row)$/;"	f
rnaPLFoldLoadAll	hg/lib/rnaPLFold.c	/^struct rnaPLFold *rnaPLFoldLoadAll(char *fileName) $/;"	f
rnaPLFoldLoadAllByChar	hg/lib/rnaPLFold.c	/^struct rnaPLFold *rnaPLFoldLoadAllByChar(char *fileName, char chopper) $/;"	f
rnaPLFoldLoadAllByTab	hg/inc/rnaPLFold.h	37;"	d
rnaPLFoldOutput	hg/lib/rnaPLFold.c	/^void rnaPLFoldOutput(struct rnaPLFold *el, FILE *f, char sep, char lastSep) $/;"	f
rnaPLFoldStaticLoad	hg/lib/rnaPLFold.c	/^void rnaPLFoldStaticLoad(char **row, struct rnaPLFold *ret)$/;"	f
rnaPLFoldTabOut	hg/inc/rnaPLFold.h	56;"	d
rnaPair	lib/rnautil.c	/^bool rnaPair(char a, char b)$/;"	f
rnaSecStr	hg/inc/rnaSecStr.h	/^struct rnaSecStr$/;"	s
rnaSecStrCommaIn	hg/lib/rnaSecStr.c	/^struct rnaSecStr *rnaSecStrCommaIn(char **pS, struct rnaSecStr *ret)$/;"	f
rnaSecStrCommaOut	hg/inc/rnaSecStr.h	59;"	d
rnaSecStrFree	hg/lib/rnaSecStr.c	/^void rnaSecStrFree(struct rnaSecStr **pEl)$/;"	f
rnaSecStrFreeList	hg/lib/rnaSecStr.c	/^void rnaSecStrFreeList(struct rnaSecStr **pList)$/;"	f
rnaSecStrLoad	hg/lib/rnaSecStr.c	/^struct rnaSecStr *rnaSecStrLoad(char **row)$/;"	f
rnaSecStrLoadAll	hg/lib/rnaSecStr.c	/^struct rnaSecStr *rnaSecStrLoadAll(char *fileName) $/;"	f
rnaSecStrLoadAllByChar	hg/lib/rnaSecStr.c	/^struct rnaSecStr *rnaSecStrLoadAllByChar(char *fileName, char chopper) $/;"	f
rnaSecStrLoadAllByTab	hg/inc/rnaSecStr.h	37;"	d
rnaSecStrOutput	hg/lib/rnaSecStr.c	/^void rnaSecStrOutput(struct rnaSecStr *el, FILE *f, char sep, char lastSep) $/;"	f
rnaSecStrTabOut	hg/inc/rnaSecStr.h	56;"	d
root	inc/rbTree.h	/^    struct rbTreeNode *root;			\/* Root of tree *\/$/;"	m	struct:rbTree	typeref:struct:rbTree::rbTreeNode
root	lib/chainBlock.c	/^    struct kdBranch *root;	\/* Pointer to root of kd-tree. *\/$/;"	m	struct:kdTree	typeref:struct:kdTree::kdBranch	file:
rootExp	inc/keys.h	/^    void *rootExp;       \/* Internally struct exp. *\/$/;"	m	struct:keyExp
rootName	hg/inc/hdb.h	/^    char *rootName;		\/* Name without chrN_. *\/$/;"	m	struct:hTableInfo
rootOffset	inc/bPlusTree.h	/^    bits64 rootOffset;		\/* Offset of root block. *\/$/;"	m	struct:bptFile
rootOffset	inc/cirTree.h	/^    bits64 rootOffset;		\/* Offset of root block. *\/$/;"	m	struct:cirTreeFile
roots	inc/gff3.h	/^    struct gff3AnnRef *roots;  \/* all records without parents. *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::gff3AnnRef
rosettaAll	hg/inc/hui.h	/^    rosettaAll =0,$/;"	e	enum:rosettaOptEnum
rosettaAllEx	hg/inc/hui.h	/^    rosettaAllEx$/;"	e	enum:rosettaExonOptEnum
rosettaConfEx	hg/inc/hui.h	/^    rosettaConfEx,$/;"	e	enum:rosettaExonOptEnum
rosettaDropDown	hg/lib/hui.c	/^void rosettaDropDown(char *var, char *curVal)$/;"	f
rosettaEnumToString	hg/lib/hui.c	/^char *rosettaEnumToString(enum rosettaOptEnum x)$/;"	f
rosettaExonDropDown	hg/lib/hui.c	/^void rosettaExonDropDown(char *var, char *curVal)$/;"	f
rosettaExonEnumToString	hg/lib/hui.c	/^char *rosettaExonEnumToString(enum rosettaExonOptEnum x)$/;"	f
rosettaExonOptEnum	hg/inc/hui.h	/^enum rosettaExonOptEnum {$/;"	g
rosettaExonOptions	hg/lib/hui.c	/^static char *rosettaExonOptions[] = {$/;"	v	file:
rosettaOptEnum	hg/inc/hui.h	/^enum rosettaOptEnum {$/;"	g
rosettaOptions	hg/lib/hui.c	/^static char *rosettaOptions[] = {$/;"	v	file:
rosettaOther	hg/inc/hui.h	/^    rosettaOther=3$/;"	e	enum:rosettaOptEnum
rosettaPool	hg/inc/hui.h	/^    rosettaPool=2,$/;"	e	enum:rosettaOptEnum
rosettaPoolOther	hg/inc/hui.h	/^    rosettaPoolOther=1,$/;"	e	enum:rosettaOptEnum
rosettaPredEx	hg/inc/hui.h	/^    rosettaPredEx,$/;"	e	enum:rosettaExonOptEnum
rosettaStringToEnum	hg/lib/hui.c	/^enum rosettaOptEnum rosettaStringToEnum(char *string)$/;"	f
rosettaStringToExonEnum	hg/lib/hui.c	/^enum rosettaExonOptEnum rosettaStringToExonEnum(char *string)$/;"	f
roughAli	hg/inc/roughAli.h	/^struct roughAli$/;"	s
roughAliCommaIn	hg/lib/roughAli.c	/^struct roughAli *roughAliCommaIn(char **pS, struct roughAli *ret)$/;"	f
roughAliCommaOut	hg/inc/roughAli.h	52;"	d
roughAliFree	hg/lib/roughAli.c	/^void roughAliFree(struct roughAli **pEl)$/;"	f
roughAliFreeList	hg/lib/roughAli.c	/^void roughAliFreeList(struct roughAli **pList)$/;"	f
roughAliLoad	hg/lib/roughAli.c	/^struct roughAli *roughAliLoad(char **row)$/;"	f
roughAliLoadAll	hg/lib/roughAli.c	/^struct roughAli *roughAliLoadAll(char *fileName) $/;"	f
roughAliOutput	hg/lib/roughAli.c	/^void roughAliOutput(struct roughAli *el, FILE *f, char sep, char lastSep) $/;"	f
roughAliStaticLoad	hg/lib/roughAli.c	/^void roughAliStaticLoad(char **row, struct roughAli *ret)$/;"	f
roughAliTabOut	hg/inc/roughAli.h	49;"	d
round	inc/common.h	1170;"	d
roundLinePrefix	lib/blastParse.c	/^static char *roundLinePrefix = "Results from round "; \/\/ start of a round line$/;"	v	file:
roundingScale	lib/common.c	/^int roundingScale(int a, int p, int q)$/;"	f
roundll	inc/common.h	1173;"	d
row	hg/inc/altGraphX.h	/^    int row;                    \/* Row that exon is stored in. *\/$/;"	m	struct:spliceEdge
row	hg/inc/imageClone.h	/^    char *row;	\/* Row *\/$/;"	m	struct:imageClone
row	hg/inc/stanMad.h	/^    int row;	\/* unknown *\/$/;"	m	struct:stanMad
row	inc/spaceSaver.h	/^    int row;			\/* Which row, starting at zero. *\/$/;"	m	struct:spaceNode
row	lib/htmlPage.c	/^    struct htmlTableRow *row;$/;"	m	struct:htmlTable	typeref:struct:htmlTable::htmlTableRow	file:
rowCount	hg/inc/altGraphX.h	/^    int rowCount;$/;"	m	struct:spliceEdge
rowCount	hg/inc/mysqlTableStatus.h	/^    int rowCount;	\/* Number of rows *\/$/;"	m	struct:mysqlTableStatus
rowCount	hg/lib/wigAsciiToBinary.c	/^static unsigned long long rowCount = 0;	\/* to count rows output *\/$/;"	v	file:
rowCount	inc/spaceSaver.h	/^    int rowCount;             \/* Number of rows. *\/$/;"	m	struct:spaceSaver
rowCount	lib/htmlPage.c	/^    int rowCount;$/;"	m	struct:htmlTable	file:
rowEnds	hg/inc/altGraphX.h	/^    int *rowEnds; $/;"	m	struct:spliceEdge
rowFormat	hg/inc/mysqlTableStatus.h	/^    char *rowFormat;	\/* Row storage format: Fixed, Dynamic, Compressed *\/$/;"	m	struct:mysqlTableStatus
rowFormat	hg/inc/tableStatus.h	/^    char *rowFormat;	\/* Seems to be mostly Fixed or Dynamic *\/$/;"	m	struct:tableStatus
rowIsBed	hg/lib/customFactory.c	/^static boolean rowIsBed(char **row, int wordCount, char *db)$/;"	f	file:
rowIsGff	hg/lib/customFactory.c	/^static boolean rowIsGff(char *db, char **row, int wordCount)$/;"	f	file:
rowIsPgSnp	hg/lib/customFactory.c	/^static boolean rowIsPgSnp (char **row, char *db, char *type)$/;"	f	file:
rowIsPsl	hg/lib/customFactory.c	/^static boolean rowIsPsl(char **row, int wordCount)$/;"	f	file:
rowList	inc/spaceSaver.h	/^    struct spaceRowTracker *rowList; \/* List of rows. *\/$/;"	m	struct:spaceSaver	typeref:struct:spaceSaver::spaceRowTracker
rowOffset	hg/lib/genePredReader.c	/^    int rowOffset;          \/* offset if have a bin column *\/$/;"	m	struct:genePredReader	file:
rowOffset	hg/lib/pslReader.c	/^    int rowOffset;          \/* offset if have a bin column *\/$/;"	m	struct:pslReader	file:
rowOpen	hg/inc/hui.h	/^    boolean rowOpen;	\/* True if have opened a row. *\/$/;"	m	struct:controlGrid
rowStarts	hg/inc/altGraphX.h	/^    int *rowStarts;$/;"	m	struct:spliceEdge
rowType	inc/annoStreamer.h	/^    enum annoRowType rowType;$/;"	m	struct:annoStreamer	typeref:enum:annoStreamer::annoRowType
rows	hg/inc/tableStatus.h	/^    unsigned rows;	\/* The number of rows in table *\/$/;"	m	struct:tableStatus
rowsRead	hg/inc/wiggle.h	/^    unsigned long long rowsRead;     \/*	reading stats, SQL rows read *\/$/;"	m	struct:wiggleDataStream
rp	hg/inc/spDb.h	/^    int rp;	\/* Id in rp table. *\/$/;"	m	struct:spCitation
rqlEval	inc/rql.h	/^struct rqlEval$/;"	s
rqlEvalArrayIx	lib/rqlEval.c	/^static struct rqlEval rqlEvalArrayIx(struct rqlParse *p, void *record, RqlEvalLookup lookup,$/;"	f	file:
rqlEvalCoerceToBoolean	lib/rqlEval.c	/^struct rqlEval rqlEvalCoerceToBoolean(struct rqlEval r)$/;"	f
rqlEvalEq	lib/rqlEval.c	/^static struct rqlEval rqlEvalEq(struct rqlParse *p, $/;"	f	file:
rqlEvalGt	lib/rqlEval.c	/^static struct rqlEval rqlEvalGt(struct rqlParse *p, void *record, RqlEvalLookup lookup,$/;"	f	file:
rqlEvalLike	lib/rqlEval.c	/^static struct rqlEval rqlEvalLike(struct rqlParse *p, void *record, RqlEvalLookup lookup,$/;"	f	file:
rqlEvalLt	lib/rqlEval.c	/^static struct rqlEval rqlEvalLt(struct rqlParse *p, void *record, RqlEvalLookup lookup,$/;"	f	file:
rqlEvalOnRecord	lib/rqlEval.c	/^struct rqlEval rqlEvalOnRecord(struct rqlParse *p, void *record, RqlEvalLookup lookup, $/;"	f
rqlLocalEval	lib/rqlEval.c	/^static struct rqlEval rqlLocalEval(struct rqlParse *p, void *record, RqlEvalLookup lookup, $/;"	f	file:
rqlOp	inc/rql.h	/^enum rqlOp$/;"	g
rqlOpAnd	inc/rql.h	/^    rqlOpAnd,     \/* An and *\/$/;"	e	enum:rqlOp
rqlOpArrayIx	inc/rql.h	/^    rqlOpArrayIx,	\/* An array with an index. *\/$/;"	e	enum:rqlOp
rqlOpBooleanToDouble	inc/rql.h	/^    rqlOpBooleanToDouble,$/;"	e	enum:rqlOp
rqlOpBooleanToInt	inc/rql.h	/^    rqlOpBooleanToInt,$/;"	e	enum:rqlOp
rqlOpDoubleToBoolean	inc/rql.h	/^    rqlOpDoubleToBoolean,$/;"	e	enum:rqlOp
rqlOpDoubleToInt	inc/rql.h	/^    rqlOpDoubleToInt,$/;"	e	enum:rqlOp
rqlOpEq	inc/rql.h	/^    rqlOpEq,	\/* An equals comparison *\/$/;"	e	enum:rqlOp
rqlOpGe	inc/rql.h	/^    rqlOpGe,  \/* Greater than or equals comparison. *\/$/;"	e	enum:rqlOp
rqlOpGt	inc/rql.h	/^    rqlOpGt,  \/* Greater than comparison. *\/$/;"	e	enum:rqlOp
rqlOpIntToBoolean	inc/rql.h	/^    rqlOpIntToBoolean,$/;"	e	enum:rqlOp
rqlOpIntToDouble	inc/rql.h	/^    rqlOpIntToDouble,$/;"	e	enum:rqlOp
rqlOpLe	inc/rql.h	/^    rqlOpLe,  \/* Less than or equals comparison. *\/$/;"	e	enum:rqlOp
rqlOpLike	inc/rql.h	/^    rqlOpLike, \/* SQL wildcard compare. *\/$/;"	e	enum:rqlOp
rqlOpLiteral	inc/rql.h	/^    rqlOpLiteral,        \/* Literal string or number. *\/$/;"	e	enum:rqlOp
rqlOpLt	inc/rql.h	/^    rqlOpLt,  \/* Less than comparison. *\/$/;"	e	enum:rqlOp
rqlOpNe	inc/rql.h	/^    rqlOpNe,	\/* A not equals comparison *\/$/;"	e	enum:rqlOp
rqlOpNot	inc/rql.h	/^    rqlOpNot,	  \/* A unary not. *\/$/;"	e	enum:rqlOp
rqlOpOr	inc/rql.h	/^    rqlOpOr,      \/* An or *\/$/;"	e	enum:rqlOp
rqlOpStringToBoolean	inc/rql.h	/^    rqlOpStringToBoolean,	$/;"	e	enum:rqlOp
rqlOpStringToDouble	inc/rql.h	/^    rqlOpStringToDouble,$/;"	e	enum:rqlOp
rqlOpStringToInt	inc/rql.h	/^    rqlOpStringToInt,$/;"	e	enum:rqlOp
rqlOpSymbol	inc/rql.h	/^    rqlOpSymbol,	\/* A symbol name. *\/$/;"	e	enum:rqlOp
rqlOpToString	lib/rqlParse.c	/^char *rqlOpToString(enum rqlOp op)$/;"	f
rqlOpUnaryMinusDouble	inc/rql.h	/^    rqlOpUnaryMinusDouble,$/;"	e	enum:rqlOp
rqlOpUnaryMinusInt	inc/rql.h	/^    rqlOpUnaryMinusInt,$/;"	e	enum:rqlOp
rqlOpUnknown	inc/rql.h	/^    rqlOpUnknown,	\/* Should not occur *\/$/;"	e	enum:rqlOp
rqlParse	inc/rql.h	/^struct rqlParse$/;"	s
rqlParseAnd	lib/rqlParse.c	/^static struct rqlParse *rqlParseAnd(struct tokenizer *tkz)$/;"	f	file:
rqlParseAtom	lib/rqlParse.c	/^static struct rqlParse *rqlParseAtom(struct tokenizer *tkz)$/;"	f	file:
rqlParseCmp	lib/rqlParse.c	/^static struct rqlParse *rqlParseCmp(struct tokenizer *tkz)$/;"	f	file:
rqlParseCoerce	lib/rqlParse.c	/^static struct rqlParse *rqlParseCoerce(struct rqlParse *p, enum rqlType type)$/;"	f	file:
rqlParseDump	lib/rqlParse.c	/^void rqlParseDump(struct rqlParse *p, int depth, FILE *f)$/;"	f
rqlParseExpression	lib/rqlParse.c	/^struct rqlParse *rqlParseExpression(struct tokenizer *tkz)$/;"	f
rqlParseFieldSpec	lib/rqlParse.c	/^static char *rqlParseFieldSpec(struct tokenizer *tkz, struct dyString *buf)$/;"	f	file:
rqlParseFreeRecursive	lib/rqlParse.c	/^static void rqlParseFreeRecursive(struct rqlParse *p)$/;"	f	file:
rqlParseIndex	lib/rqlParse.c	/^static struct rqlParse *rqlParseIndex(struct tokenizer *tkz)$/;"	f	file:
rqlParseNot	lib/rqlParse.c	/^static struct rqlParse *rqlParseNot(struct tokenizer *tkz)$/;"	f	file:
rqlParseOr	lib/rqlParse.c	/^static struct rqlParse *rqlParseOr(struct tokenizer *tkz)$/;"	f	file:
rqlParseUnaryMinus	lib/rqlParse.c	/^static struct rqlParse *rqlParseUnaryMinus(struct tokenizer *tkz)$/;"	f	file:
rqlParseVarsUsed	lib/rqlParse.c	/^void rqlParseVarsUsed(struct rqlParse *p, struct slName **pVarList)$/;"	f
rqlStatement	inc/rql.h	/^struct rqlStatement$/;"	s
rqlStatementDump	lib/rqlParse.c	/^void rqlStatementDump(struct rqlStatement *rql, FILE *f)$/;"	f
rqlStatementFree	lib/rqlParse.c	/^void rqlStatementFree(struct rqlStatement **pRql)$/;"	f
rqlStatementParse	lib/rqlParse.c	/^struct rqlStatement *rqlStatementParse(struct lineFile *lf)$/;"	f
rqlType	inc/rql.h	/^enum rqlType$/;"	g
rqlTypeBoolean	inc/rql.h	/^    rqlTypeBoolean = 1,$/;"	e	enum:rqlType
rqlTypeDouble	inc/rql.h	/^    rqlTypeDouble = 4,$/;"	e	enum:rqlType
rqlTypeInt	inc/rql.h	/^    rqlTypeInt = 3,$/;"	e	enum:rqlType
rqlTypeString	inc/rql.h	/^    rqlTypeString = 2,$/;"	e	enum:rqlType
rqlVal	inc/rql.h	/^union rqlVal$/;"	u
rqlValDump	lib/rqlParse.c	/^void rqlValDump(union rqlVal val, enum rqlType type, FILE *f)$/;"	f
rrmoeDropDown	hg/lib/hui.c	/^void rrmoeDropDown(char *var, char *curVal)$/;"	f
rrmoeEnumToString	hg/lib/hui.c	/^char *rrmoeEnumToString(enum recombRateMouseOptEnum x)$/;"	f
rrmoeMgdAvg	hg/inc/hui.h	/^   rrmoeMgdAvg = 1,$/;"	e	enum:recombRateMouseOptEnum
rrmoeStringToEnum	hg/lib/hui.c	/^enum recombRateMouseOptEnum rrmoeStringToEnum(char *string)$/;"	f
rrmoeWiAvg	hg/inc/hui.h	/^   rrmoeWiAvg = 0,$/;"	e	enum:recombRateMouseOptEnum
rroeDecodeAvg	hg/inc/hui.h	/^   rroeDecodeAvg = 0,$/;"	e	enum:recombRateOptEnum
rroeDecodeFemale	hg/inc/hui.h	/^   rroeDecodeFemale = 1,$/;"	e	enum:recombRateOptEnum
rroeDecodeMale	hg/inc/hui.h	/^   rroeDecodeMale = 2,$/;"	e	enum:recombRateOptEnum
rroeDropDown	hg/lib/hui.c	/^void rroeDropDown(char *var, char *curVal)$/;"	f
rroeEnumToString	hg/lib/hui.c	/^char *rroeEnumToString(enum recombRateOptEnum x)$/;"	f
rroeGenethonAvg	hg/inc/hui.h	/^   rroeGenethonAvg = 6,$/;"	e	enum:recombRateOptEnum
rroeGenethonFemale	hg/inc/hui.h	/^   rroeGenethonFemale = 7,$/;"	e	enum:recombRateOptEnum
rroeGenethonMale	hg/inc/hui.h	/^   rroeGenethonMale = 8,$/;"	e	enum:recombRateOptEnum
rroeMarshfieldAvg	hg/inc/hui.h	/^   rroeMarshfieldAvg = 3,$/;"	e	enum:recombRateOptEnum
rroeMarshfieldFemale	hg/inc/hui.h	/^   rroeMarshfieldFemale = 4,$/;"	e	enum:recombRateOptEnum
rroeMarshfieldMale	hg/inc/hui.h	/^   rroeMarshfieldMale = 5,$/;"	e	enum:recombRateOptEnum
rroeStringToEnum	hg/lib/hui.c	/^enum recombRateOptEnum rroeStringToEnum(char *string)$/;"	f
rrroeDropDown	hg/lib/hui.c	/^void rrroeDropDown(char *var, char *curVal)$/;"	f
rrroeEnumToString	hg/lib/hui.c	/^char *rrroeEnumToString(enum recombRateRatOptEnum x)$/;"	f
rrroeFhhAvg	hg/inc/hui.h	/^   rrroeFhhAvg = 1,$/;"	e	enum:recombRateRatOptEnum
rrroeShrspAvg	hg/inc/hui.h	/^   rrroeShrspAvg = 0,$/;"	e	enum:recombRateRatOptEnum
rrroeStringToEnum	hg/lib/hui.c	/^enum recombRateRatOptEnum rrroeStringToEnum(char *string)$/;"	f
rsId	hg/inc/affy10KDetails.h	/^    char *rsId;	\/* RS identifier (some are null) *\/$/;"	m	struct:affy10KDetails
rsId	hg/inc/affy120KDetails.h	/^    char *rsId;	\/* RS identifier (some are null) *\/$/;"	m	struct:affy120KDetails
rsId	hg/inc/affyGenoDetails.h	/^    unsigned rsId;	\/* RS identifier (some are null) *\/$/;"	m	struct:affyGenoDetails
rsId	hg/inc/alleleFreqs.h	/^    char *rsId;	\/*  rs			rs2104604 *\/$/;"	m	struct:alleleFreqs
rsId	hg/inc/dbSnpRs.h	/^    char *rsId;	\/* dbSnp reference snp (rs) identifier *\/$/;"	m	struct:dbSnpRs
rsId	hg/inc/genotype.h	/^    char *rsId;	\/*  rs#		# rs10 *\/$/;"	m	struct:genotype
rsId	hg/inc/genotypeFreqs.h	/^    char *rsId;	\/* rs		rs2104604 *\/$/;"	m	struct:genotypeFreqs
rsId	hg/inc/snpFasta.h	/^    char *rsId;	\/* Reference SNP identifier *\/$/;"	m	struct:snpFasta
rsquared	hg/inc/hapmapLd.h	/^    char *rsquared;	\/* Encoded lists of r^2 values *\/$/;"	m	struct:hapmapLd
rsquared	hg/inc/ld.h	/^    char *rsquared;	\/* Encoded lists of r^2 values *\/$/;"	m	struct:ld
rsquared	hg/inc/ld2.h	/^    char *rsquared;	\/* Encoded list (length=ldCount) of r^2 values *\/$/;"	m	struct:ld2
rttAve	inc/rudp.h	/^    int rttAve;		\/* Approximate average of recent RTTs. *\/$/;"	m	struct:rudp
rttLast	inc/rudp.h	/^    int rttLast;	\/* Last round trip time (RTT) for a message\/ack in microseconds. *\/$/;"	m	struct:rudp
rttVary	inc/rudp.h	/^    int rttVary;	\/* Approximate variation of recent RTTs. *\/$/;"	m	struct:rudp
rudp	inc/rudp.h	/^struct rudp$/;"	s
rudpAck	inc/rudp.h	/^    rudpAck = 199,	\/* Acknowledge message. *\/$/;"	e	enum:rudpType
rudpAddRoundTripTime	lib/rudp.c	/^static void rudpAddRoundTripTime(struct rudp *ru, int time)$/;"	f	file:
rudpCalcTimeOut	lib/rudp.c	/^static int rudpCalcTimeOut(struct rudp *ru)$/;"	f	file:
rudpClose	lib/rudp.c	/^void rudpClose(struct rudp **pRu)$/;"	f
rudpData	inc/rudp.h	/^    rudpData = 200,	\/* Message with some data. *\/$/;"	e	enum:rudpType
rudpFree	lib/rudp.c	/^void rudpFree(struct rudp **pRu)$/;"	f
rudpHeader	inc/rudp.h	/^struct rudpHeader$/;"	s
rudpHost	inc/rudp.h	/^typedef bits32 rudpHost;  \/* The IP address (in host order) of another computer. *\/$/;"	t
rudpMaxSize	inc/rudp.h	118;"	d
rudpMustOpen	lib/rudp.c	/^struct rudp *rudpMustOpen()$/;"	f
rudpMustOpenBound	lib/rudp.c	/^struct rudp *rudpMustOpenBound(struct sockaddr_in *sai)$/;"	f
rudpNew	lib/rudp.c	/^struct rudp *rudpNew(int socket)$/;"	f
rudpOpen	lib/rudp.c	/^struct rudp *rudpOpen()$/;"	f
rudpOpenBound	lib/rudp.c	/^struct rudp *rudpOpenBound(struct sockaddr_in *sai)$/;"	f
rudpPrintStatus	lib/rudp.c	/^void rudpPrintStatus(struct rudp *ru)$/;"	f
rudpReceive	lib/rudp.c	/^int rudpReceive(struct rudp *ru, void *messageBuf, int bufSize)$/;"	f
rudpReceiveFrom	lib/rudp.c	/^int rudpReceiveFrom(struct rudp *ru, void *messageBuf, int bufSize, $/;"	f
rudpReceiveTimeOut	lib/rudp.c	/^int rudpReceiveTimeOut(struct rudp *ru, void *messageBuf, int bufSize, $/;"	f
rudpSend	lib/rudp.c	/^int rudpSend(struct rudp *ru, struct sockaddr_in *sai, void *message, int size)$/;"	f
rudpTest	lib/rudp.c	/^void rudpTest()$/;"	f
rudpTimedOut	lib/rudp.c	/^static void rudpTimedOut(struct rudp *ru)$/;"	f	file:
rudpType	inc/rudp.h	/^enum rudpType$/;"	g
runTime	inc/apacheLog.h	/^    int runTime;	\/* Overall time (optional) in milliseconds *\/$/;"	m	struct:apacheAccessLog
rwCheckGoodEnough	jkOwnLib/fuzzyFind.c	/^static boolean rwCheckGoodEnough;$/;"	v	file:
rwFindTilesBetween	jkOwnLib/fuzzyFind.c	/^static struct ffAli *rwFindTilesBetween(DNA *ns, DNA *ne, DNA *hs, DNA *he, $/;"	f	file:
rwFreq	jkOwnLib/fuzzyFind.c	/^static double rwFreq[4];$/;"	v	file:
rwIsCdna	jkOwnLib/fuzzyFind.c	/^static boolean rwIsCdna;$/;"	v	file:
s	inc/memgfx.h	/^    unsigned short s, l;$/;"	m	struct:hslColor
s	inc/memgfx.h	/^    unsigned short s, v;$/;"	m	struct:hsvColor
s	inc/rql.h	/^    char *s;$/;"	m	union:rqlVal
sAlloc	inc/tokenizer.h	/^    int sAlloc;          \/* Allocated string size. *\/$/;"	m	struct:tokenizer
sSize	inc/tokenizer.h	/^    int sSize;           \/* Size of string. *\/$/;"	m	struct:tokenizer
safeClose	lib/pipeline.c	/^static void safeClose(int *fdPtr)$/;"	f	file:
safecat	lib/common.c	/^void safecat(char *buf, size_t bufSize, const char *src)$/;"	f
safecpy	lib/common.c	/^void safecpy(char *buf, size_t bufSize, const char *src)$/;"	f
safef	lib/common.c	/^int safef(char* buffer, int bufSize, char *format, ...)$/;"	f
safencat	lib/common.c	/^void safencat(char *buf, size_t bufSize, const char *src, size_t n)$/;"	f
safencpy	lib/common.c	/^void safencpy(char *buf, size_t bufSize, const char *src, size_t n)$/;"	f
sage	hg/inc/sage.h	/^struct sage$/;"	s
sageCommaIn	hg/lib/sage.c	/^struct sage *sageCommaIn(char **pS, struct sage *ret)$/;"	f
sageCommaOut	hg/inc/sage.h	51;"	d
sageCounts	hg/inc/sageCounts.h	/^struct sageCounts$/;"	s
sageCountsCommaIn	hg/lib/sageCounts.c	/^struct sageCounts *sageCountsCommaIn(char **pS, struct sageCounts *ret)$/;"	f
sageCountsCommaOut	hg/inc/sageCounts.h	43;"	d
sageCountsFree	hg/lib/sageCounts.c	/^void sageCountsFree(struct sageCounts **pEl)$/;"	f
sageCountsFreeList	hg/lib/sageCounts.c	/^void sageCountsFreeList(struct sageCounts **pList)$/;"	f
sageCountsLoad	hg/lib/sageCounts.c	/^struct sageCounts *sageCountsLoad(char **row)$/;"	f
sageCountsLoadAll	hg/lib/sageCounts.c	/^struct sageCounts *sageCountsLoadAll(char *fileName) $/;"	f
sageCountsOutput	hg/lib/sageCounts.c	/^void sageCountsOutput(struct sageCounts *el, FILE *f, char sep, char lastSep) $/;"	f
sageCountsTabOut	hg/inc/sageCounts.h	40;"	d
sageExp	hg/inc/sageExp.h	/^struct sageExp$/;"	s
sageExpCommaIn	hg/lib/sageExp.c	/^struct sageExp *sageExpCommaIn(char **pS, struct sageExp *ret)$/;"	f
sageExpCommaOut	hg/inc/sageExp.h	54;"	d
sageExpFree	hg/lib/sageExp.c	/^void sageExpFree(struct sageExp **pEl)$/;"	f
sageExpFreeList	hg/lib/sageExp.c	/^void sageExpFreeList(struct sageExp **pList)$/;"	f
sageExpLoad	hg/lib/sageExp.c	/^struct sageExp *sageExpLoad(char **row)$/;"	f
sageExpLoadAll	hg/lib/sageExp.c	/^struct sageExp *sageExpLoadAll(char *fileName) $/;"	f
sageExpOutput	hg/lib/sageExp.c	/^void sageExpOutput(struct sageExp *el, FILE *f, char sep, char lastSep) $/;"	f
sageExpStaticLoad	hg/lib/sageExp.c	/^void sageExpStaticLoad(char **row, struct sageExp *ret)$/;"	f
sageExpTabOut	hg/inc/sageExp.h	51;"	d
sageFree	hg/lib/sage.c	/^void sageFree(struct sage **pEl)$/;"	f
sageFreeList	hg/lib/sage.c	/^void sageFreeList(struct sage **pList)$/;"	f
sageLoad	hg/lib/sage.c	/^struct sage *sageLoad(char **row)$/;"	f
sageLoadAll	hg/lib/sage.c	/^struct sage *sageLoadAll(char *fileName) $/;"	f
sageOutput	hg/lib/sage.c	/^void sageOutput(struct sage *el, FILE *f, char sep, char lastSep) $/;"	f
sageTabOut	hg/inc/sage.h	48;"	d
samAlignment	hg/inc/samAlignment.h	/^struct samAlignment$/;"	s
samAlignmentAutoSqlString	hg/lib/samAlignment.c	/^static char *samAlignmentAutoSqlString =$/;"	v	file:
samAlignmentCommaIn	hg/lib/samAlignment.c	/^struct samAlignment *samAlignmentCommaIn(char **pS, struct samAlignment *ret)$/;"	f
samAlignmentCommaOut	hg/inc/samAlignment.h	68;"	d
samAlignmentFree	hg/lib/samAlignment.c	/^void samAlignmentFree(struct samAlignment **pEl)$/;"	f
samAlignmentFreeList	hg/lib/samAlignment.c	/^void samAlignmentFreeList(struct samAlignment **pList)$/;"	f
samAlignmentLoad	hg/lib/samAlignment.c	/^struct samAlignment *samAlignmentLoad(char **row)$/;"	f
samAlignmentLoadAll	hg/lib/samAlignment.c	/^struct samAlignment *samAlignmentLoadAll(char *fileName)$/;"	f
samAlignmentLoadAllByChar	hg/lib/samAlignment.c	/^struct samAlignment *samAlignmentLoadAllByChar(char *fileName, char chopper)$/;"	f
samAlignmentLoadAllByTab	hg/inc/samAlignment.h	46;"	d
samAlignmentOutput	hg/lib/samAlignment.c	/^void samAlignmentOutput(struct samAlignment *el, FILE *f, char sep, char lastSep)$/;"	f
samAlignmentStaticLoad	hg/lib/samAlignment.c	/^void samAlignmentStaticLoad(char **row, struct samAlignment *ret)$/;"	f
samAlignmentTabOut	hg/inc/samAlignment.h	65;"	d
samAsObj	hg/lib/samAlignment.c	/^struct asObject *samAsObj()$/;"	f
samFile	hg/lib/hgBam.c	/^    samfile_t *samFile;	\/* Open sam\/bam file header. *\/$/;"	m	struct:bamToSamHelper	file:
samList	hg/lib/hgBam.c	/^    struct samAlignment *samList;	\/* List of alignments. *\/$/;"	m	struct:bamToSamHelper	typeref:struct:bamToSamHelper::samAlignment	file:
sameGifContents	lib/gifLabel.c	/^boolean sameGifContents(struct memGfx *n1, struct memGfx *n2)$/;"	f
sameOk	inc/common.h	736;"	d
sameStickyEnd	hg/lib/cutter.c	/^boolean sameStickyEnd(struct cutter *enz1, struct cutter *enz2)$/;"	f
sameString	inc/common.h	739;"	d
sameStringN	inc/common.h	742;"	d
sameType	hg/lib/customFactory.c	/^static boolean sameType(char *a, char *b)$/;"	f	file:
sameWord	inc/common.h	721;"	d
samfile_t	inc/bamFile.h	/^typedef struct { } samfile_t;$/;"	t	typeref:struct:__anon7
sample	hg/inc/cnpSharpCutoff.h	/^    char *sample;	\/* Sample name *\/$/;"	m	struct:cnpSharpCutoff
sample	hg/inc/cnpSharpSample.h	/^    char *sample;	\/* Sample name *\/$/;"	m	struct:cnpSharpSample
sample	hg/inc/dgv.h	/^    char *sample;	\/* Description of sample population for the study *\/$/;"	m	struct:dgv
sample	hg/inc/sample.h	/^struct sample$/;"	s
sampleCommaIn	hg/lib/sample.c	/^struct sample *sampleCommaIn(char **pS, struct sample *ret)$/;"	f
sampleCommaOut	hg/inc/sample.h	59;"	d
sampleCount	hg/inc/affyTranscriptome.h	/^    unsigned sampleCount;	\/* Number of points in this record *\/$/;"	m	struct:affyTranscriptome
sampleCount	hg/inc/sample.h	/^    unsigned sampleCount;	\/* number of samples total *\/$/;"	m	struct:sample
sampleFree	hg/lib/sample.c	/^void sampleFree(struct sample **pEl)$/;"	f
sampleFreeList	hg/lib/sample.c	/^void sampleFreeList(struct sample **pList)$/;"	f
sampleHeight	hg/inc/affyTranscriptome.h	/^    char *sampleHeight;	\/* Intentisy of hybridization *\/$/;"	m	struct:affyTranscriptome
sampleHeight	hg/inc/sample.h	/^    int *sampleHeight;	\/* the height each pixel is drawn to [0,1000] *\/$/;"	m	struct:sample
sampleLoad	hg/lib/sample.c	/^struct sample *sampleLoad(char **row)$/;"	f
sampleLoadAll	hg/lib/sample.c	/^struct sample *sampleLoadAll(char *fileName) $/;"	f
sampleLoadWhere	hg/lib/sample.c	/^struct sample *sampleLoadWhere(struct sqlConnection *conn, char *table, char *where) $/;"	f
sampleOutput	hg/lib/sample.c	/^void sampleOutput(struct sample *el, FILE *f, char sep, char lastSep) $/;"	f
samplePosition	hg/inc/affyTranscriptome.h	/^    char *samplePosition;	\/* Posititions of the oligos *\/$/;"	m	struct:affyTranscriptome
samplePosition	hg/inc/sample.h	/^    unsigned *samplePosition;	\/* bases relative to chromStart (x-values) *\/$/;"	m	struct:sample
sampleSize	hg/inc/polyGenotype.h	/^    int sampleSize;	\/* number of measurements *\/$/;"	m	struct:polyGenotype
sampleTabOut	hg/inc/sample.h	56;"	d
sampleToRangeList	hg/lib/liftOver.c	/^static struct liftRange *sampleToRangeList(struct sample *sample, int sizeOne)$/;"	f	file:
sanger22extra	hg/inc/sanger22extra.h	/^struct sanger22extra$/;"	s
sanger22extraCommaIn	hg/lib/sanger22extra.c	/^struct sanger22extra *sanger22extraCommaIn(char **pS, struct sanger22extra *ret)$/;"	f
sanger22extraCommaOut	hg/inc/sanger22extra.h	49;"	d
sanger22extraCreate	hg/lib/sanger22extra.c	/^char *sanger22extraCreate = $/;"	v
sanger22extraFree	hg/lib/sanger22extra.c	/^void sanger22extraFree(struct sanger22extra **pEl)$/;"	f
sanger22extraFreeList	hg/lib/sanger22extra.c	/^void sanger22extraFreeList(struct sanger22extra **pList)$/;"	f
sanger22extraLoad	hg/lib/sanger22extra.c	/^struct sanger22extra *sanger22extraLoad(char **row)$/;"	f
sanger22extraLoadAll	hg/lib/sanger22extra.c	/^struct sanger22extra *sanger22extraLoadAll(char *fileName) $/;"	f
sanger22extraOutput	hg/lib/sanger22extra.c	/^void sanger22extraOutput(struct sanger22extra *el, FILE *f, char sep, char lastSep) $/;"	f
sanger22extraStaticLoad	hg/lib/sanger22extra.c	/^void sanger22extraStaticLoad(char **row, struct sanger22extra *ret)$/;"	f
sanger22extraTabOut	hg/inc/sanger22extra.h	46;"	d
sangerDir	lib/wormdna.c	/^static char *sangerDir = NULL;$/;"	v	file:
sangerGene	hg/inc/sangerGene.h	/^struct sangerGene$/;"	s
sangerGene	hg/inc/sangerGeneToWBGeneID.h	/^    char *sangerGene;	\/* sangerGene name *\/$/;"	m	struct:sangerGeneToWBGeneID
sangerGeneCommaIn	hg/lib/sangerGene.c	/^struct sangerGene *sangerGeneCommaIn(char **pS, struct sangerGene *ret)$/;"	f
sangerGeneCommaOut	hg/inc/sangerGene.h	61;"	d
sangerGeneFree	hg/lib/sangerGene.c	/^void sangerGeneFree(struct sangerGene **pEl)$/;"	f
sangerGeneFreeList	hg/lib/sangerGene.c	/^void sangerGeneFreeList(struct sangerGene **pList)$/;"	f
sangerGeneLoad	hg/lib/sangerGene.c	/^struct sangerGene *sangerGeneLoad(char **row)$/;"	f
sangerGeneLoadAll	hg/lib/sangerGene.c	/^struct sangerGene *sangerGeneLoadAll(char *fileName) $/;"	f
sangerGeneLoadAllByChar	hg/lib/sangerGene.c	/^struct sangerGene *sangerGeneLoadAllByChar(char *fileName, char chopper) $/;"	f
sangerGeneLoadAllByTab	hg/inc/sangerGene.h	39;"	d
sangerGeneOutput	hg/lib/sangerGene.c	/^void sangerGeneOutput(struct sangerGene *el, FILE *f, char sep, char lastSep) $/;"	f
sangerGeneTabOut	hg/inc/sangerGene.h	58;"	d
sangerGeneToWBGeneID	hg/inc/sangerGeneToWBGeneID.h	/^struct sangerGeneToWBGeneID$/;"	s
sangerGeneToWBGeneIDCommaIn	hg/lib/sangerGeneToWBGeneID.c	/^struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDCommaIn(char **pS, struct sangerGeneToWBGeneID *ret)$/;"	f
sangerGeneToWBGeneIDCommaOut	hg/inc/sangerGeneToWBGeneID.h	85;"	d
sangerGeneToWBGeneIDFree	hg/lib/sangerGeneToWBGeneID.c	/^void sangerGeneToWBGeneIDFree(struct sangerGeneToWBGeneID **pEl)$/;"	f
sangerGeneToWBGeneIDFreeList	hg/lib/sangerGeneToWBGeneID.c	/^void sangerGeneToWBGeneIDFreeList(struct sangerGeneToWBGeneID **pList)$/;"	f
sangerGeneToWBGeneIDLoad	hg/lib/sangerGeneToWBGeneID.c	/^struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoad(char **row)$/;"	f
sangerGeneToWBGeneIDLoadAll	hg/lib/sangerGeneToWBGeneID.c	/^struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoadAll(char *fileName) $/;"	f
sangerGeneToWBGeneIDLoadAllByChar	hg/lib/sangerGeneToWBGeneID.c	/^struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoadAllByChar(char *fileName, char chopper) $/;"	f
sangerGeneToWBGeneIDLoadAllByTab	hg/inc/sangerGeneToWBGeneID.h	38;"	d
sangerGeneToWBGeneIDLoadByQuery	hg/lib/sangerGeneToWBGeneID.c	/^struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
sangerGeneToWBGeneIDOutput	hg/lib/sangerGeneToWBGeneID.c	/^void sangerGeneToWBGeneIDOutput(struct sangerGeneToWBGeneID *el, FILE *f, char sep, char lastSep) $/;"	f
sangerGeneToWBGeneIDSaveToDb	hg/lib/sangerGeneToWBGeneID.c	/^void sangerGeneToWBGeneIDSaveToDb(struct sqlConnection *conn, struct sangerGeneToWBGeneID *el, char *tableName, int updateSize)$/;"	f
sangerGeneToWBGeneIDSaveToDbEscaped	hg/lib/sangerGeneToWBGeneID.c	/^void sangerGeneToWBGeneIDSaveToDbEscaped(struct sqlConnection *conn, struct sangerGeneToWBGeneID *el, char *tableName, int updateSize)$/;"	f
sangerGeneToWBGeneIDStaticLoad	hg/lib/sangerGeneToWBGeneID.c	/^void sangerGeneToWBGeneIDStaticLoad(char **row, struct sangerGeneToWBGeneID *ret)$/;"	f
sangerGeneToWBGeneIDTabOut	hg/inc/sangerGeneToWBGeneID.h	82;"	d
sangerName	hg/inc/bacCloneAlias.h	/^    char *sangerName;	\/* Sanger STS name *\/$/;"	m	struct:bacCloneAlias
sangerName	hg/inc/bacCloneXRef.h	/^    char *sangerName;	\/* Sanger STS name *\/$/;"	m	struct:bacCloneXRef
sangerName	hg/inc/vegaInfoZfish.h	/^    char *sangerName;	\/* Sanger gene name *\/$/;"	m	struct:vegaInfoZfish
sargassoSeaXra	hg/inc/sargassoSeaXra.h	/^struct sargassoSeaXra$/;"	s
sargassoSeaXraCommaIn	hg/lib/sargassoSeaXra.c	/^struct sargassoSeaXra *sargassoSeaXraCommaIn(char **pS, struct sargassoSeaXra *ret)$/;"	f
sargassoSeaXraCommaOut	hg/inc/sargassoSeaXra.h	67;"	d
sargassoSeaXraFree	hg/lib/sargassoSeaXra.c	/^void sargassoSeaXraFree(struct sargassoSeaXra **pEl)$/;"	f
sargassoSeaXraFreeList	hg/lib/sargassoSeaXra.c	/^void sargassoSeaXraFreeList(struct sargassoSeaXra **pList)$/;"	f
sargassoSeaXraLoad	hg/lib/sargassoSeaXra.c	/^struct sargassoSeaXra *sargassoSeaXraLoad(char **row)$/;"	f
sargassoSeaXraLoadAll	hg/lib/sargassoSeaXra.c	/^struct sargassoSeaXra *sargassoSeaXraLoadAll(char *fileName) $/;"	f
sargassoSeaXraLoadAllByChar	hg/lib/sargassoSeaXra.c	/^struct sargassoSeaXra *sargassoSeaXraLoadAllByChar(char *fileName, char chopper) $/;"	f
sargassoSeaXraLoadAllByTab	hg/inc/sargassoSeaXra.h	45;"	d
sargassoSeaXraOutput	hg/lib/sargassoSeaXra.c	/^void sargassoSeaXraOutput(struct sargassoSeaXra *el, FILE *f, char sep, char lastSep) $/;"	f
sargassoSeaXraStaticLoad	hg/lib/sargassoSeaXra.c	/^void sargassoSeaXraStaticLoad(char **row, struct sargassoSeaXra *ret)$/;"	f
sargassoSeaXraTabOut	hg/inc/sargassoSeaXra.h	64;"	d
saturatedRainbowAtPos	lib/rainbow.c	/^struct rgbColor saturatedRainbowAtPos(double pos)$/;"	f
saturatedRainbowTable	lib/rainbow.c	/^struct rgbColor saturatedRainbowTable[28] = {$/;"	v	typeref:struct:rgbColor
saveAliToPermanentMem	jkOwnLib/fuzzyFind.c	/^static struct ffAli *saveAliToPermanentMem(struct ffAli *volatileAli)$/;"	f	file:
saveAlignments	jkOwnLib/gfBlatLib.c	/^static void saveAlignments(char *chromName, int chromSize, int chromOffset, $/;"	f	file:
saveAxtBundle	jkOwnLib/gfOut.c	/^static void saveAxtBundle(char *chromName, int chromSize, int chromOffset,$/;"	f	file:
saveDefaultGsidLists	hg/lib/cart.c	/^static void saveDefaultGsidLists(char *genomeDb, struct cart *cart)$/;"	f	file:
saveLabeledFileList	hg/lib/chromGraphFactory.c	/^static void saveLabeledFileList(struct labeledFile *fileList)$/;"	f	file:
saveNt4	lib/nt4.c	/^void  saveNt4(char *fileName, DNA *dna, bits32 dnaSize)$/;"	f
savePosInTextBox	hg/lib/wikiTrack.c	/^static void savePosInTextBox(char *chrom, int start, int end)$/;"	f	file:
savePslx	jkOwnLib/gfOut.c	/^static void savePslx(char *chromName, int chromSize, int chromOffset,$/;"	f	file:
saveSeq	jkOwnLib/gfOut.c	/^    boolean saveSeq;		\/* Save sequence too? *\/$/;"	m	struct:pslxData	file:
saveSettings	hg/lib/customTrack.c	/^static void saveSettings(FILE *f, char *settings)$/;"	f	file:
saveState	hg/lib/cart.c	/^static void saveState(struct cart *cart)$/;"	f	file:
saveTdbLine	hg/lib/customTrack.c	/^static void saveTdbLine(FILE *f, char *fileName, struct trackDb *tdb )$/;"	f	file:
saved	inc/cheapcgi.h	/^    boolean saved;		\/* True if saved. *\/$/;"	m	struct:cgiVar
scConnDb	hg/lib/jksql.c	/^static char *scConnDb(struct sqlConnection *sc)$/;"	f	file:
scale	inc/spaceSaver.h	/^    double scale;             \/* What to scale by to get to cell coordinates. *\/$/;"	m	struct:spaceSaver
scaledLog	lib/hmmstats.c	/^int scaledLog(double val)$/;"	f
scaledLogOfFraction	jkOwnLib/xensmall.c	/^static int scaledLogOfFraction(double p, double q)$/;"	f	file:
scan	hg/inc/rnaGenes.h	/^    float scan;	\/* tRNAScanSE score *\/$/;"	m	struct:rnaGenes
scanChromOffsetFile	lib/wormdna.c	/^static struct wormFeature *scanChromOffsetFile(char *dir, char *suffix, $/;"	f	file:
scanExactLeft	jkOwnLib/ffSeedExtend.c	/^static char *scanExactLeft(char *n, int nSize, int hSize, char *hEnd, int resolveLimit)$/;"	f	file:
scanExactRight	jkOwnLib/ffSeedExtend.c	/^static char *scanExactRight(char *n, int nSize, int hSize, char *hStart, int resolveLimit)$/;"	f	file:
scanForSmallerExons	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *scanForSmallerExons( int seedSize, $/;"	f	file:
scanForTinyInternal	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *scanForTinyInternal(struct dnaSeq *qSeq, struct dnaSeq *tSeq,$/;"	f	file:
scanIndexForSmallExons	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *scanIndexForSmallExons(struct genoFind *gf, struct gfSeqSource *target,$/;"	f	file:
scanTinyOne	jkOwnLib/ffSeedExtend.c	/^struct ffAli *scanTinyOne(char *nStart, char *nEnd, char *hStart, char *hEnd, $/;"	f
sccs	hg/inc/scopDes.h	/^    char *sccs;	\/* Dense hierarchy info. *\/$/;"	m	struct:scopDes
scientificName	hg/inc/dbDb.h	/^    char *scientificName;	\/* Genus and species of the organism; e.g. Homo sapiens *\/$/;"	m	struct:dbDb
scizs	hg/inc/cutter.h	/^    char **scizs;	\/* Names of isoschizomers *\/$/;"	m	struct:cutter
scopDes	hg/inc/scopDes.h	/^struct scopDes$/;"	s
scopDesCommaIn	hg/lib/scopDes.c	/^struct scopDes *scopDesCommaIn(char **pS, struct scopDes *ret)$/;"	f
scopDesCommaOut	hg/inc/scopDes.h	59;"	d
scopDesFree	hg/lib/scopDes.c	/^void scopDesFree(struct scopDes **pEl)$/;"	f
scopDesFreeList	hg/lib/scopDes.c	/^void scopDesFreeList(struct scopDes **pList)$/;"	f
scopDesLoad	hg/lib/scopDes.c	/^struct scopDes *scopDesLoad(char **row)$/;"	f
scopDesLoadAll	hg/lib/scopDes.c	/^struct scopDes *scopDesLoadAll(char *fileName) $/;"	f
scopDesLoadAllByChar	hg/lib/scopDes.c	/^struct scopDes *scopDesLoadAllByChar(char *fileName, char chopper) $/;"	f
scopDesLoadAllByTab	hg/inc/scopDes.h	37;"	d
scopDesOutput	hg/lib/scopDes.c	/^void scopDesOutput(struct scopDes *el, FILE *f, char sep, char lastSep) $/;"	f
scopDesStaticLoad	hg/lib/scopDes.c	/^void scopDesStaticLoad(char **row, struct scopDes *ret)$/;"	f
scopDesTabOut	hg/inc/scopDes.h	56;"	d
score	hg/inc/affyTranscriptome.h	/^    unsigned score;	\/* Score *\/$/;"	m	struct:affyTranscriptome
score	hg/inc/alignInfo.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:alignInfo
score	hg/inc/allpredictions.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:allpredictions
score	hg/inc/arCOGs.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:arCOGs
score	hg/inc/bed12Source.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:bed12Source
score	hg/inc/bed12wSeq.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:bed12wSeq
score	hg/inc/bed5FloatScore.h	/^    int score;	\/* 0-1000 score for useScore shading *\/$/;"	m	struct:bed5FloatScore
score	hg/inc/bed5Pval.h	/^    int score;	\/* 0-1000 score for useScore shading *\/$/;"	m	struct:bed5Pval
score	hg/inc/bed6FloatScore.h	/^    float score;	\/* Floating point score. *\/$/;"	m	struct:bed6FloatScore
score	hg/inc/bed8Attrs.h	/^    unsigned score;	\/* Score from 0-1000 (might not be applicable) *\/$/;"	m	struct:bed8Attrs
score	hg/inc/bedDetail.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:bedDetail
score	hg/inc/blastzNet.h	/^    unsigned score;	\/* score always zero *\/$/;"	m	struct:blastzNet
score	hg/inc/borf.h	/^    float score;	\/* A score of 50 or more is decent *\/$/;"	m	struct:borf
score	hg/inc/cddInfo.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:cddInfo
score	hg/inc/cdsEvidence.h	/^    double score;	\/* 0-1000, higher is better *\/$/;"	m	struct:cdsEvidence
score	hg/inc/cdsPick.h	/^    double score;	\/* Higher is better. *\/$/;"	m	struct:cdsPick
score	hg/inc/cgh.h	/^    float score;	\/* hybridization score *\/$/;"	m	struct:cgh
score	hg/inc/chainNet.h	/^    double score;  \/* Score of associated chain. 0 if undefined. *\/$/;"	m	struct:cnFill
score	hg/inc/chainView.h	/^    double score;	  	  \/* Total score for chain. *\/$/;"	m	struct:chainView
score	hg/inc/chr18deletions.h	/^    unsigned score;	\/* Score of a marker = 1000\/(# of placements) *\/$/;"	m	struct:chr18deletions
score	hg/inc/cnpIafrate.h	/^    float score;	\/* Score *\/$/;"	m	struct:cnpIafrate
score	hg/inc/cnpRedon.h	/^    float score;	\/* Score *\/$/;"	m	struct:cnpRedon
score	hg/inc/codeBlast.h	/^    unsigned score;	\/* Score (0-1000) *\/$/;"	m	struct:codeBlast
score	hg/inc/codeBlastScore.h	/^    unsigned score;	\/* score from evalue *\/$/;"	m	struct:codeBlastScore
score	hg/inc/dbRIP.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:dbRIP
score	hg/inc/delConrad2.h	/^    unsigned score;	\/* Always 1000 *\/$/;"	m	struct:delConrad2
score	hg/inc/dgv.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:dgv
score	hg/inc/dless.h	/^    float score;	\/* Log-odds score (bits) *\/$/;"	m	struct:dless
score	hg/inc/easyGene.h	/^    unsigned score;	\/* Score *\/$/;"	m	struct:easyGene
score	hg/inc/ensPhusionBlast.h	/^    unsigned score;	\/* Integer alignment score *\/$/;"	m	struct:ensPhusionBlast
score	hg/inc/exoFish.h	/^    unsigned score;	\/* Score from 0 to 1000 *\/$/;"	m	struct:exoFish
score	hg/inc/exprBed.h	/^    unsigned score;	\/* Score from pslLayout of best score *\/$/;"	m	struct:exprBed
score	hg/inc/fishClones.h	/^    unsigned score;	\/* Always 1000 *\/$/;"	m	struct:fishClones
score	hg/inc/fosEndPairs.h	/^    unsigned score;	\/* Score = 1000\/(# of times fosmid appears in assembly) *\/$/;"	m	struct:fosEndPairs
score	hg/inc/gbRNAs.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:gbRNAs
score	hg/inc/genMapDb.h	/^    unsigned score;	\/* Score - always 1000 *\/$/;"	m	struct:genMapDb
score	hg/inc/genePred.h	/^    int score;                    \/* score *\/$/;"	m	struct:genePred
score	hg/inc/genomicDups.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:genomicDups
score	hg/inc/genomicSuperDups.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:genomicSuperDups
score	hg/inc/hapmapAlleleFreq.h	/^    unsigned score;	\/* Minor allele frequency from 500 to 1000 *\/$/;"	m	struct:hapmapAlleleFreq
score	hg/inc/hapmapAlleles.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:hapmapAlleles
score	hg/inc/hapmapAllelesCombined.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:hapmapAllelesCombined
score	hg/inc/hapmapAllelesOrtho.h	/^    unsigned score;	\/* Quality score *\/$/;"	m	struct:hapmapAllelesOrtho
score	hg/inc/hapmapAllelesSummary.h	/^    unsigned score;	\/* Use for heterozygosity *\/$/;"	m	struct:hapmapAllelesSummary
score	hg/inc/hapmapLd.h	/^    unsigned score;	\/* Number of markers with LD values *\/$/;"	m	struct:hapmapLd
score	hg/inc/hapmapPhaseIIISummary.h	/^    unsigned score;	\/* Average of population heterozygosities in parts per thousand (0-500) *\/$/;"	m	struct:hapmapPhaseIIISummary
score	hg/inc/hapmapPrimateAlleles.h	/^    unsigned score;	\/* 0 *\/$/;"	m	struct:hapmapPrimateAlleles
score	hg/inc/hapmapSnps.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:hapmapSnps
score	hg/inc/hapmapSnpsCombined.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:hapmapSnpsCombined
score	hg/inc/humanParalog.h	/^    unsigned score;	\/* Human mouse aligment score using Blat *\/$/;"	m	struct:humanParalog
score	hg/inc/jaxQTL.h	/^    unsigned score;	\/* Score from 0-1000 (bed6 compat.) *\/$/;"	m	struct:jaxQTL
score	hg/inc/jaxQTL2.h	/^    unsigned score;	\/* Score from 0-1000 (bed6 compat.) *\/$/;"	m	struct:jaxQTL2
score	hg/inc/jaxQTL3.h	/^    unsigned score;	\/* Score from 0-1000 (bed6 compat.) *\/$/;"	m	struct:jaxQTL3
score	hg/inc/jgiGene.h	/^    unsigned score;	\/* 1000 *\/$/;"	m	struct:jgiGene
score	hg/inc/ld.h	/^    unsigned score;	\/* Number of markers with LD values *\/$/;"	m	struct:ld
score	hg/inc/lfs.h	/^    unsigned score;	\/* Score = 1000\/(# of times clone appears in assembly) *\/$/;"	m	struct:lfs
score	hg/inc/lowelabPfamHit.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:lowelabPfamHits
score	hg/inc/mafSummary.h	/^    float score;	\/* Floating point score. *\/$/;"	m	struct:mafSummary
score	hg/inc/makeItemsItem.h	/^    unsigned score;	\/* 0-1000.  Higher numbers are darker. *\/$/;"	m	struct:makeItemsItem
score	hg/inc/mammalPsg.h	/^    unsigned score;	\/* 400 for P<0.05 on any test; 700 fdr significant under any test; 1000 fdr significant under test A *\/$/;"	m	struct:mammalPsg
score	hg/inc/mapSts.h	/^    unsigned score;	\/* Score of a marker - depends on how many contigs it hits *\/$/;"	m	struct:mapSts
score	hg/inc/mcnBreakpoints.h	/^    unsigned score;	\/* Always 1000 for now *\/$/;"	m	struct:mcnBreakpoints
score	hg/inc/megablastInfo.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:megablastInfo
score	hg/inc/mouseOrtho.h	/^    unsigned score;	\/* Human mouse aligment score using Blat *\/$/;"	m	struct:mouseOrtho
score	hg/inc/mouseSynWhd.h	/^    unsigned score;	\/* Unused (bed 6 compatibility) *\/$/;"	m	struct:mouseSynWhd
score	hg/inc/ncRna.h	/^    int score;	\/* score *\/$/;"	m	struct:ncRna
score	hg/inc/netAlign.h	/^    double score;	\/* Score - a number proportional to 100x matching bases *\/$/;"	m	struct:netAlign
score	hg/inc/omicia.h	/^    unsigned score;	\/* confidence score *\/$/;"	m	struct:omiciaAuto
score	hg/inc/omicia.h	/^    unsigned score;	\/* confidence score *\/$/;"	m	struct:omiciaHand
score	hg/inc/orthoAlleles.h	/^    unsigned score;	\/* 0 *\/$/;"	m	struct:orthoAlleles
score	hg/inc/pairedTagAlign.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:pairedTagAlign
score	hg/inc/peptideMapping.h	/^    unsigned score;	\/* Log e-value scaled to a score of 0 (worst) to 1000 (best) *\/$/;"	m	struct:peptideMapping
score	hg/inc/plasEndPairs.h	/^    unsigned score;	\/* Score = 1000\/(# of times clone appears in assembly) *\/$/;"	m	struct:plasEndPairs
score	hg/inc/protFeat.h	/^    double score;	\/* Some sort of score, often an eVal *\/$/;"	m	struct:protFeat
score	hg/inc/pscreen.h	/^    unsigned score;	\/* Score from 0-1000 (placeholder! for bed 6 compat) *\/$/;"	m	struct:pscreen
score	hg/inc/pseudoGeneLink.h	/^    unsigned score;	\/* score of pseudogene with gene *\/$/;"	m	struct:pseudoGeneLink
score	hg/inc/pslWScore.h	/^    float score;	\/* score field *\/$/;"	m	struct:pslWScore
score	hg/inc/putaInfo.h	/^    unsigned score;	\/* aligned score *\/$/;"	m	struct:putaInfo
score	hg/inc/rankProp.h	/^    float score;	\/* rankp score *\/$/;"	m	struct:rankProp
score	hg/inc/retroMrnaInfo.h	/^    unsigned score;	\/* score of pseudogene with gene col5 *\/$/;"	m	struct:retroMrnaInfo
score	hg/inc/rikenCluster.h	/^    unsigned score;	\/* Always 1000 *\/$/;"	m	struct:rikenUcscCluster
score	hg/inc/rnaGene.h	/^    unsigned score;	\/* Score from 0 to 1000 *\/$/;"	m	struct:rnaGene
score	hg/inc/rnaGenes.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:rnaGenes
score	hg/inc/rnaGroup.h	/^    unsigned score;	\/* Always 1000 *\/$/;"	m	struct:rnaGroup
score	hg/inc/rnaSecStr.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:rnaSecStr
score	hg/inc/roughAli.h	/^    unsigned score;	\/* Score from 0 to 1000 *\/$/;"	m	struct:roughAli
score	hg/inc/sample.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:sample
score	hg/inc/sargassoSeaXra.h	/^    unsigned score;	\/* score from evalue *\/$/;"	m	struct:sargassoSeaXra
score	hg/inc/scoredRef.h	/^    float score;	\/* Overall score *\/$/;"	m	struct:scoredRef
score	hg/inc/sgdOther.h	/^    int score;	\/* Always 0 *\/$/;"	m	struct:sgdOther
score	hg/inc/simpleRepeat.h	/^    unsigned score;	\/* Score between  and .  Best is . *\/$/;"	m	struct:simpleRepeat
score	hg/inc/snoRNAs.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:snoRNAs
score	hg/inc/snp.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:snp
score	hg/inc/snp125.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:snp125
score	hg/inc/snp125.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:snp125Extended
score	hg/inc/snp132Ext.h	/^    unsigned score;	\/* Not used *\/$/;"	m	struct:snp132Ext
score	hg/inc/softPromoter.h	/^    unsigned score;	\/* Score from 0 to 1000 *\/$/;"	m	struct:softPromoter
score	hg/inc/stsMap.h	/^    unsigned score;     \/* Score of a marker = 1000\/(#placements) when placed uniquely, else 1500\/(#placements) when placed in multiple locations *\/$/;"	m	struct:stsMap
score	hg/inc/stsMapMouse.h	/^    unsigned score;     \/* Score of a marker = 1000\/(#placements) when placed uniquely, else 1500\/(#placements) when placed in multiple locations *\/$/;"	m	struct:stsMapMouse
score	hg/inc/stsMapMouseNew.h	/^    unsigned score;     \/* Score of a marker = 1000\/(#placements) when placed uniquely, else 1500\/(#placements) when placed in multiple locations *\/$/;"	m	struct:stsMapMouseNew
score	hg/inc/stsMapRat.h	/^    unsigned score;     \/* Score of a marker = 1000\/(#placements) when placed uniquely, else 1500\/(#placements) when placed in multiple locations *\/$/;"	m	struct:stsMapRat
score	hg/inc/stsMarker.h	/^    unsigned score;	\/* Score of a marker - depends on how many contigs it hits *\/$/;"	m	struct:stsMarker
score	hg/inc/switchDbTss.h	/^    unsigned score;	\/* Score *\/$/;"	m	struct:switchDbTss
score	hg/inc/synteny100000.h	/^    unsigned score;	\/* score always zero *\/$/;"	m	struct:synteny100000
score	hg/inc/syntenyBerk.h	/^    unsigned score;	\/* score always zero *\/$/;"	m	struct:syntenyBerk
score	hg/inc/syntenySanger.h	/^    unsigned score;	\/* score always zero *\/$/;"	m	struct:syntenySanger
score	hg/inc/tRNAs.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:tRNAs
score	hg/inc/tagAlign.h	/^    int score;	\/* Indicates mismatches, quality, or other measurement (0-1000) *\/$/;"	m	struct:tagAlign
score	hg/inc/tfbsCons.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:tfbsCons
score	hg/inc/tfbsConsSites.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:tfbsConsSites
score	hg/inc/tigrCmrGene.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:tigrCmrGene
score	hg/inc/transRegCode.h	/^    unsigned score;	\/* Score from 0 to 1000 *\/$/;"	m	struct:transRegCode
score	hg/inc/txCluster.h	/^    int score;	\/* BED score - 0-1000.  0 if not used. *\/$/;"	m	struct:txCluster
score	hg/inc/txEdgeBed.h	/^    int score;	\/* Score - 0-1000 *\/$/;"	m	struct:txEdgeBed
score	hg/inc/txEdgeOrtho.h	/^    int score;	\/* Parts per thousand of edge that align *\/$/;"	m	struct:txEdgeOrtho
score	hg/inc/ucscRetroInfo.h	/^    unsigned score;	\/* score of pseudogene with gene col5 *\/$/;"	m	struct:ucscRetroInfo
score	hg/inc/variome.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:variome
score	hg/inc/wgRna.h	/^    unsigned score;	\/* Score from 0-1000 (bed6 compat.) *\/$/;"	m	struct:wgRna
score	hg/inc/wikiTrack.h	/^    unsigned score;	\/* Score from 0-1000 *\/$/;"	m	struct:wikiTrack
score	hg/inc/zdobnovSynt.h	/^    unsigned score;	\/* Score placeholder *\/$/;"	m	struct:zdobnovSynt
score	hg/lib/lowelabPfamHit.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:lowelabPfamHits
score	hg/lib/snoRNAs.h	/^    unsigned score;	\/* Score from 900-1000.  1000 is best *\/$/;"	m	struct:snoRNAs
score	inc/axt.h	/^    int score;	                \/* Score.  Zero for unknown.  Units arbitrary. *\/$/;"	m	struct:axt
score	inc/basicBed.h	/^    int score; \/* Score - 0-1000 *\/  \/* Should be uint but there are still some ct users with neg values, .as DOES say uint *\/$/;"	m	struct:bed
score	inc/chain.h	/^    double score;	  	  \/* Total score for chain. *\/$/;"	m	struct:chain
score	inc/chain.h	/^    int score;	 	 	\/* Score of block. *\/$/;"	m	struct:cBlock
score	inc/crudeali.h	/^    int score;$/;"	m	struct:crudeAli
score	inc/ens.h	/^    int score;                     \/* Score (I don't know units) *\/$/;"	m	struct:ensFeature
score	inc/gff.h	/^    double score;   \/* Score. *\/$/;"	m	struct:gffLine
score	inc/gff3.h	/^    float score; \/* The score of the feature, a floating point number.  As in$/;"	m	struct:gff3Ann
score	inc/hmmPfamParse.h	/^    double score;	\/* Some sort of bit score. *\/$/;"	m	struct:hpfDomain
score	inc/hmmPfamParse.h	/^    double score;	\/* Some sort of bit score. *\/$/;"	m	struct:hpfModel
score	inc/maDbRep.h	/^    int score;	\/* Score in something like log-odds form *\/$/;"	m	struct:mrnaAli
score	inc/maf.h	/^    double score;        \/* Score.  Meaning depends on mafFile.scoring.  0.0 if no scoring. *\/$/;"	m	struct:mafAli
score	inc/peakCluster.h	/^    double score;		\/* Ideally something like -log(p). *\/$/;"	m	struct:peakItem
score	inc/peakCluster.h	/^    double score;		\/* Sum of component scores. *\/$/;"	m	struct:peakCluster
score	inc/repMask.h	/^    unsigned score;	\/* Smith-Waterman score. *\/$/;"	m	struct:repeatMaskOut
score	inc/splatAli.h	/^    int score;	\/* Mapping score. 1000\/placesMapped *\/$/;"	m	struct:splatAli
score	jkOwnLib/bandExt.c	/^struct score$/;"	s	file:
score	jkOwnLib/crudeali.c	/^    int score;$/;"	m	struct:crudeGene	file:
score	jkOwnLib/fuzzyFind.c	/^    int score;$/;"	m	struct:protoGene	file:
score	jkOwnLib/supStitch.c	/^    int score;                   \/* Score you get taking this edge. *\/$/;"	m	struct:ssEdge	file:
score	jkOwnLib/xenbig.c	/^    int score;$/;"	m	struct:cluster	file:
score	jkOwnLib/xenbig.c	/^    int score;$/;"	m	struct:contig	file:
score	lib/blastOut.c	/^    int score;		    \/* Score of best element *\/$/;"	m	struct:targetHits	file:
score	lib/chainBlock.c	/^    double score;		\/* Score of us plus predecessor. *\/$/;"	m	struct:predScore	file:
score	lib/oldGff.c	/^    char score[62];	\/* A number between 0 and 1 *\/$/;"	m	struct:gffSegLine	file:
scoreAli	jkOwnLib/gfBlatLib.c	/^static int scoreAli(struct ffAli *ali, boolean isProt, $/;"	f	file:
scoreBlocks	lib/chainBlock.c	/^static double scoreBlocks(struct cBlock *blockList, ConnectCost connectCost,$/;"	f	file:
scoreCfgUi	hg/lib/hui.c	/^void scoreCfgUi(char *db, struct cart *cart, struct trackDb *tdb, char *name, char *title,  int maxScore, boolean boxed)$/;"	f
scoreColIx	inc/peakCluster.h	/^    int scoreColIx;		\/* Index for score column. *\/$/;"	m	struct:peakSource
scoreField	hg/inc/hdb.h	/^    char scoreField[HDB_MAX_FIELD_STRING];	\/* Name of score field. *\/$/;"	m	struct:hTableInfo
scoreFieldSql	hg/lib/genePred.c	/^static char *scoreFieldSql = $/;"	v	file:
scoreFilter	hg/inc/bed.h	/^    enum numericFilterType scoreFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
scoreGrayLevelCfgUi	hg/lib/hui.c	/^void scoreGrayLevelCfgUi(struct cart *cart, struct trackDb *tdb, char *prefix, int scoreMax)$/;"	f
scoreNoninsertingExtensions	jkOwnLib/crudeali.c	/^void scoreNoninsertingExtensions(struct crudeGene *crudeGene, DNA *probe, int probeSize)$/;"	f
scoreQualifier	hg/lib/featureBits.c	/^static boolean scoreQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
scoreVals	hg/inc/bed.h	/^    int *scoreVals;$/;"	m	struct:bedFilter
scoreWindow	lib/scoreWindow.c	/^int scoreWindow(char c, char *s, int size, int *score, int *start, int *end, int match, int misMatch)$/;"	f
scoredRef	hg/inc/scoredRef.h	/^struct scoredRef$/;"	s
scoredRefCommaIn	hg/lib/scoredRef.c	/^struct scoredRef *scoredRefCommaIn(char **pS, struct scoredRef *ret)$/;"	f
scoredRefCommaOut	hg/inc/scoredRef.h	52;"	d
scoredRefFree	hg/lib/scoredRef.c	/^void scoredRefFree(struct scoredRef **pEl)$/;"	f
scoredRefFreeList	hg/lib/scoredRef.c	/^void scoredRefFreeList(struct scoredRef **pList)$/;"	f
scoredRefLoad	hg/lib/scoredRef.c	/^struct scoredRef *scoredRefLoad(char **row)$/;"	f
scoredRefLoadAll	hg/lib/scoredRef.c	/^struct scoredRef *scoredRefLoadAll(char *fileName) $/;"	f
scoredRefOutput	hg/lib/scoredRef.c	/^void scoredRefOutput(struct scoredRef *el, FILE *f, char sep, char lastSep) $/;"	f
scoredRefStaticLoad	hg/lib/scoredRef.c	/^void scoredRefStaticLoad(char **row, struct scoredRef *ret)$/;"	f
scoredRefTabOut	hg/inc/scoredRef.h	49;"	d
scoredRefTableCreate	hg/lib/scoredRef.c	/^void scoredRefTableCreate(struct sqlConnection *conn, char *tableName, int indexSize)$/;"	f
scores	hg/inc/exprBed.h	/^    float *scores;	\/* log of ratio of feature for particular hybridization *\/$/;"	m	struct:exprBed
scores	inc/pairHmm.h	/^    int *scores;		\/* Scores for the current row. *\/$/;"	m	struct:phmmState
scoring	inc/maf.h	/^    char *scoring;	 \/* Optional (may be NULL). Name of  scoring scheme. *\/$/;"	m	struct:mafFile
sd	lib/net.c	/^    int sd;                     \/* socket descriptor *\/$/;"	m	struct:parallelConn	file:
sd	lib/net.c	/^int sd;$/;"	m	struct:netConnectFtpParams	file:
sdata	lib/net.c	/^int sdata; $/;"	m	struct:netConnectFtpParams	file:
seCount	hg/inc/chr18deletions.h	/^    unsigned seCount;	\/* Number of small blocks *\/$/;"	m	struct:chr18deletions
searchDescription	hg/inc/hgFindSpec.h	/^    char *searchDescription;	\/* Description of table\/search (default: trackDb.{longLabel,tableName}) *\/$/;"	m	struct:hgFindSpec
searchDescriptionMatches	hg/lib/search.c	/^boolean searchDescriptionMatches(struct trackDb *tdb, struct slName *wordList)$/;"	f
searchKnownCanonical	hg/lib/hgFind.c	/^static boolean searchKnownCanonical(char *db, char *term, struct hgPositions *hgp)$/;"	f	file:
searchMatchToken	hg/lib/search.c	/^static boolean searchMatchToken(char *string, char *token)$/;"	f	file:
searchMethod	hg/inc/hgFindSpec.h	/^    char *searchMethod;	\/* Type of search (exact, prefix, fuzzy). *\/$/;"	m	struct:hgFindSpec
searchName	hg/inc/hgFindSpec.h	/^    char *searchName;	\/* Unique name for this search.  Defaults to searchTable if not specified in .ra. *\/$/;"	m	struct:hgFindSpec
searchNameMatches	hg/lib/search.c	/^boolean searchNameMatches(struct trackDb *tdb, struct slName *wordList)$/;"	f
searchPriority	hg/inc/hgFindSpec.h	/^    float searchPriority;	\/* 0-1000 - relative order\/importance of this search.  0 is top. *\/$/;"	m	struct:hgFindSpec
searchSettings	hg/inc/hgFindSpec.h	/^    char *searchSettings;	\/* Name\/value pairs for searchType-specific stuff. *\/$/;"	m	struct:hgFindSpec
searchSpecial	hg/lib/hgFind.c	/^static boolean searchSpecial(char *db, struct hgFindSpec *hfs, char *term,$/;"	f	file:
searchStrand	hg/lib/cutter.c	/^struct bed *searchStrand(struct hash *sixers, struct cutter *ACGTo[], struct dnaSeq *seq, int startOffset, char strand)$/;"	f
searchTab	hg/inc/search.h	/^enum searchTab {$/;"	g
searchTable	hg/inc/hgFindSpec.h	/^    char *searchTable;	\/* (Non-unique!) Table to be searched.  (Like trackDb.tableName: if split, omit chr*_ prefix.) *\/$/;"	m	struct:hgFindSpec
searchType	hg/inc/hgFindSpec.h	/^    char *searchType;	\/* Type of search (bed, genePred, knownGene etc). *\/$/;"	m	struct:hgFindSpec
secStr	hg/inc/rnaSecStr.h	/^    char *secStr;	\/* Parentheses and '.'s which define the secondary structure *\/$/;"	m	struct:rnaSecStr
secStruct	hg/inc/dnaProbe.h	/^    float secStruct;	\/* gibbs free energy of secondary structure, higher is better *\/$/;"	m	struct:dnaProbe
secondaryId	hg/inc/hgnc.h	/^    char *secondaryId;	\/* Secondary ID *\/$/;"	m	struct:hgnc
section	hg/inc/ispyTables.h	/^    char *section;	\/* Section *\/$/;"	m	struct:labTrack
sectionList	inc/metaWig.h	/^    struct bwgSection *sectionList;	\/* List of all sections. *\/$/;"	m	struct:metaWig	typeref:struct:metaWig::bwgSection
secure	inc/htmlPage.h	/^    boolean secure;		\/* Is it a secure cookie? *\/$/;"	m	struct:htmlCookie
seedResolvePower	jkOwnLib/ffSeedExtend.c	/^static int seedResolvePower(int seedSize, int resolveLimit)$/;"	f	file:
seedSize	jkOwnLib/patSpace.c	/^    int seedSize;			 \/* Size of alignment seed. *\/$/;"	m	struct:patSpace	file:
seedSpaceSize	jkOwnLib/patSpace.c	/^    int seedSpaceSize;                    \/* Number of possible seed values. *\/$/;"	m	struct:patSpace	file:
seekAllPastId	lib/trix.c	/^static void seekAllPastId(struct trixWordResult *twrList, char *itemId)$/;"	f	file:
seekAllToId	lib/trix.c	/^static boolean seekAllToId(struct trixWordResult *twrList, char *itemId)$/;"	f	file:
seekOneToId	lib/trix.c	/^static boolean seekOneToId(struct trixWordResult *twr, char *itemId)$/;"	f	file:
segBlock	inc/seg.h	/^struct segBlock$/;"	s
segBlockFree	lib/seg.c	/^void segBlockFree(struct segBlock **pObj)$/;"	f
segBlockFreeList	lib/seg.c	/^void segBlockFreeList(struct segBlock **pList)$/;"	f
segComp	inc/seg.h	/^struct segComp$/;"	s
segCompFree	lib/seg.c	/^void segCompFree(struct segComp **pObj)$/;"	f
segCompFreeList	lib/seg.c	/^void segCompFreeList(struct segComp **pList)$/;"	f
segFile	inc/seg.h	/^struct segFile$/;"	s
segFileFree	lib/seg.c	/^void segFileFree(struct segFile **pObj)$/;"	f
segFileFreeList	lib/seg.c	/^void segFileFreeList(struct segFile **pList)$/;"	f
segFindCompSpecies	lib/seg.c	/^struct segComp *segFindCompSpecies(struct segBlock *sb, char *src,$/;"	f
segFirstCompSpecies	lib/seg.c	/^char *segFirstCompSpecies(struct segBlock *sb, char sepChar)$/;"	f
segLabel	hg/inc/mouseSynWhd.h	/^    char *segLabel;	\/* Whitehead segment label *\/$/;"	m	struct:mouseSynWhd
segMayFindCompSpecies	lib/seg.c	/^struct segComp *segMayFindCompSpecies(struct segBlock *sb, char *src,$/;"	f
segMayOpen	lib/seg.c	/^struct segFile *segMayOpen(char *fileName)$/;"	f
segNext	lib/seg.c	/^struct segBlock *segNext(struct segFile *sf)$/;"	f
segNextWithPos	lib/seg.c	/^struct segBlock *segNextWithPos(struct segFile *sf, off_t *retOffset)$/;"	f
segOpen	lib/seg.c	/^struct segFile *segOpen(char *fileName)$/;"	f
segReadAll	lib/seg.c	/^struct segFile *segReadAll(char *fileName)$/;"	f
segRewind	lib/seg.c	/^void segRewind(struct segFile *sf)$/;"	f
segSecSpeciesList	lib/seg.c	/^struct slName *segSecSpeciesList(struct segBlock *sb, struct segComp *refComp,$/;"	f
segSize	inc/genoFind.h	/^    int segSize;			 \/* Index is segmented if non-zero. *\/$/;"	m	struct:genoFind
segWrite	lib/seg.c	/^void segWrite(FILE *f, struct segBlock *block)$/;"	f
segWriteEnd	lib/seg.c	/^void segWriteEnd(FILE *f)$/;"	f
segWriteStart	lib/seg.c	/^void segWriteStart(FILE *f)$/;"	f
segment	hg/inc/mouseSyn.h	/^    int segment;	\/* Number of segment *\/$/;"	m	struct:mouseSyn
selected	hg/lib/hui.c	/^    boolean *selected;$/;"	m	struct:_members	file:
selenocysteine	hg/inc/txInfo.h	/^    unsigned char selenocysteine;	\/* If true TGA codes for selenocysteine *\/$/;"	m	struct:txInfo
semiUniqName	lib/osunix.c	/^char *semiUniqName(char *base)$/;"	f
semicolon	hg/inc/cutter.h	/^    unsigned char semicolon;	\/* REBASE record: 0 if primary isomer, 1 if not. *\/$/;"	m	struct:cutter
sendCount	inc/rudp.h	/^    int sendCount;	\/* Number of packets attempted to send. *\/$/;"	m	struct:rudp
sendFtpCommand	lib/net.c	/^static boolean sendFtpCommand(int sd, char *cmd, struct dyString **retReply, int *retCode)$/;"	f	file:
sendFtpCommandOnly	lib/net.c	/^static void sendFtpCommandOnly(int sd, char *cmd)$/;"	f	file:
sendFtpDataToPipeThread	lib/net.c	/^static void *sendFtpDataToPipeThread(void *threadParams)$/;"	f	file:
sendMicro	inc/rudp.h	/^    bits32 sendMicro;	\/* Time sent microseconds. Returned with ack. *\/$/;"	m	struct:rudpHeader
sendSec	inc/rudp.h	/^    bits32 sendSec;	\/* Time sent in seconds.  Returned with ack. *\/$/;"	m	struct:rudpHeader
separateSexChroms	hg/lib/genoLay.c	/^static void separateSexChroms(struct slRef *in,$/;"	f	file:
separator	hg/inc/joiner.h	/^    char *separator;		\/* Separators for lists or NULL if not list. *\/$/;"	m	struct:joinerField
seq	hg/inc/cutter.h	/^    char *seq;	\/* Recognition sequence *\/$/;"	m	struct:cutter
seq	hg/inc/pepPred.h	/^    char *seq;	\/* Peptide sequence *\/$/;"	m	struct:pepPred
seq	hg/inc/pgSnp.h	/^    char *seq;$/;"	m	struct:pgCodon
seq	hg/inc/rnaFold.h	/^    char *seq;	\/* mRNA sequence (U's instead of T's) *\/$/;"	m	struct:rnaFold
seq	hg/inc/samAlignment.h	/^    char *seq;	\/* Query template sequence *\/$/;"	m	struct:samAlignment
seq	inc/ace.h	/^    struct dnaSeq *seq;$/;"	m	struct:aceCO	typeref:struct:aceCO::dnaSeq
seq	inc/ace.h	/^    struct dnaSeq *seq;$/;"	m	struct:aceRD	typeref:struct:aceRD::dnaSeq
seq	inc/genoFind.h	/^    bioSeq *seq;	\/* Sequences.  Usually either this or fileName is NULL. *\/$/;"	m	struct:gfSeqSource
seq	inc/gff.h	/^    char *seq;      \/* Name of sequence. *\/$/;"	m	struct:gffLine
seq	inc/gff.h	/^    char *seq;      \/* Name of sequence. Not allocated here. *\/$/;"	m	struct:gffGroup
seq	inc/patSpace.h	/^    struct dnaSeq *seq;        \/* Sequence in which hit occurs. *\/$/;"	m	struct:patClump	typeref:struct:patClump::dnaSeq
seq	inc/trans3.h	/^     struct dnaSeq *seq;		\/* Untranslated sequence.  Not allocated here. *\/$/;"	m	struct:trans3	typeref:struct:trans3::dnaSeq
seq	jkOwnLib/ffSeedExtend.c	/^    char *seq;$/;"	m	struct:seqHashEl	file:
seq	jkOwnLib/patSpace.c	/^    struct dnaSeq *seq; \/* Pointer to subsequence. *\/$/;"	m	struct:blockPos	typeref:struct:blockPos::dnaSeq	file:
seq1	hg/inc/bed12wSeq.h	/^    char *seq1;	\/* sequence 1, normally left paired end *\/$/;"	m	struct:bed12wSeq
seq1	hg/inc/pairedTagAlign.h	/^    char *seq1;	\/* Sequence of first read *\/$/;"	m	struct:pairedTagAlign
seq2	hg/inc/bed12wSeq.h	/^    char *seq2;	\/* sequence 2, normally right paired end *\/$/;"	m	struct:bed12wSeq
seq2	hg/inc/pairedTagAlign.h	/^    char *seq2;	\/* Sequence of second read *\/$/;"	m	struct:pairedTagAlign
seqClumpToRangeList	jkOwnLib/gfBlatLib.c	/^static struct gfRange *seqClumpToRangeList(struct gfClump *clumpList, int frame)$/;"	f	file:
seqCount	inc/twoBit.h	/^    bits32 seqCount;	\/* Number of sequences. *\/$/;"	m	struct:twoBitFile
seqDir	inc/gfWebLib.h	/^    char *seqDir;	\/* Where associated sequence lives. *\/$/;"	m	struct:gfServerAt
seqEnd	inc/ens.h	/^    int seqEnd;				\/* End position. *\/$/;"	m	struct:ensExon
seqFile	hg/inc/targetDb.h	/^    char *seqFile;	\/* Target sequence file path (typically \/gbdb\/$db\/targetDb\/$name.2bit) *\/$/;"	m	struct:targetDb
seqGet	hg/lib/hdb.c	/^static bioSeq *seqGet(char *db, char *acc, boolean isDna, char *seqTbl, char *extFileTbl)$/;"	f	file:
seqHash	inc/gff.h	/^    struct hash *seqHash;	\/* A name only hash of the sequence. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::hash
seqHashEl	jkOwnLib/ffSeedExtend.c	/^struct seqHashEl$/;"	s	file:
seqIsDna	lib/dnaseq.c	/^boolean seqIsDna(bioSeq *seq)$/;"	f
seqIsLower	lib/dnaseq.c	/^boolean seqIsLower(bioSeq *seq)$/;"	f
seqIx	hg/inc/ggPrivate.h	/^    int seqIx;                \/* Chromosome (or contig) index. *\/$/;"	m	struct:clonePair
seqIx	inc/patSpace.h	/^    int seqIx;                 \/* Index of contig where hit occurs. *\/$/;"	m	struct:patClump
seqIx	jkOwnLib/patSpace.c	/^    bits16 seqIx;          \/* Which subsequence in bac. *\/$/;"	m	struct:blockPos	file:
seqList	inc/gff.h	/^    struct gffSeqName *seqList; \/* List of sequences in file. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::gffSeqName
seqMap	inc/gff3.h	/^    struct hash *seqMap;                 \/* map of sequence ids to sequence$/;"	m	struct:gff3File	typeref:struct:gff3File::hash
seqMustGet	hg/lib/hdb.c	/^static bioSeq *seqMustGet(char *db, char *acc, boolean isDna, char *seqTbl, char *extFileTbl)$/;"	f	file:
seqName	inc/gfPcrLib.h	/^    char *seqName;	\/* Name of sequence (chromosome maybe) that gets amplified. *\/$/;"	m	struct:gfPcrOutput
seqOutColor	inc/seqOut.h	/^enum seqOutColor$/;"	g
seqOutColorLookup	lib/seqOut.c	/^int seqOutColorLookup[] =$/;"	v
seqRegion	inc/gff3.h	/^    struct gff3SeqRegion *seqRegion;  \/* start\/end of sequence region, taken$/;"	m	struct:gff3Ann	typeref:struct:gff3Ann::gff3SeqRegion
seqRegionMap	inc/gff3.h	/^    struct hash *seqRegionMap;  \/* map of seqId to gff3SeqRegion objects. NULL$/;"	m	struct:gff3File	typeref:struct:gff3File::hash
seqRegions	inc/gff3.h	/^    struct gff3SeqRegion *seqRegions;  \/* list of gff3SeqRegion objects. *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::gff3SeqRegion
seqSize	hg/inc/clonePos.h	/^    unsigned seqSize;	\/* base count not including gaps *\/$/;"	m	struct:clonePos
seqSize	hg/inc/coordConv.h	/^    int seqSize; \/** Size of sequence being aligned to genome. *\/$/;"	m	struct:coordConvRep
seqSize	inc/gfPcrLib.h	/^    int seqSize;	\/* Size of sequence (chromosome maybe) *\/$/;"	m	struct:gfPcrOutput
seqStart	inc/ens.h	/^    int seqStart;			\/* Start position. *\/$/;"	m	struct:ensExon
seqTable	hg/inc/targetDb.h	/^    char *seqTable;	\/* Table in db that has extFileTable indices of target sequences *\/$/;"	m	struct:targetDb
seqTm	lib/oligoTm.c	/^double seqTm(char *seq, double dna_conc, double salt_conc)$/;"	f
seqend	hg/inc/codeBlastScore.h	/^    unsigned seqend;	\/* Where alignment ends *\/$/;"	m	struct:codeBlastScore
seqid	inc/gff3.h	/^    char *seqid;    \/* sequence if of region *\/$/;"	m	struct:gff3SeqRegion
seqid	inc/gff3.h	/^    char *seqid;   \/* The ID of the landmark used to establish the coordinate$/;"	m	struct:gff3Ann
seqname	lib/oldGff.c	/^    char seqname[64];   \/* Name of DNA sequence this refers to. *\/$/;"	m	struct:gffSegLine	file:
seqs	inc/gff3.h	/^    struct dnaSeq *seqs;                 \/* list of sequences *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::dnaSeq
seqs	inc/twoBit.h	/^    struct twoBitSeqSpec *seqs;     \/* list of sequences and subsequences *\/$/;"	m	struct:twoBitSpec	typeref:struct:twoBitSpec::twoBitSeqSpec
seqstart	hg/inc/codeBlastScore.h	/^    unsigned seqstart;	\/* Where alignment begins *\/$/;"	m	struct:codeBlastScore
sequence	hg/inc/simpleRepeat.h	/^    char *sequence;	\/* Sequence of repeat unit element *\/$/;"	m	struct:simpleRepeat
sequence	hg/inc/stsInfo.h	/^    unsigned sequence;	\/* Whether the full sequence is available (1) or not (0) for STS *\/$/;"	m	struct:stsInfo
sequence	hg/inc/stsInfo2.h	/^    unsigned sequence;	\/* Whether the full sequence is available (1) or not (0) for STS *\/$/;"	m	struct:stsInfo2
sequence	hg/inc/stsInfoMouse.h	/^    unsigned sequence;	\/* Whether the full sequence is available (1) or not (0) for STS *\/$/;"	m	struct:stsInfoMouse
sequence	hg/inc/stsInfoMouseNew.h	/^    unsigned sequence;	\/* Whether the full sequence is available (1) or not (0) for STS *\/$/;"	m	struct:stsInfoMouseNew
sequence	hg/inc/stsInfoRat.h	/^    unsigned sequence;	\/* Whether the full sequence is available (1) or not (0) for STS *\/$/;"	m	struct:stsInfoRat
sequence	hg/inc/tagAlign.h	/^    char *sequence;	\/* Sequence of this read *\/$/;"	m	struct:tagAlign
sequence	hg/inc/variant.h	/^    char *sequence;$/;"	m	struct:allele
sequenceA	hg/inc/affy10KDetails.h	/^    char sequenceA[35];	\/* The A allele with flanking sequence *\/$/;"	m	struct:affy10KDetails
sequenceA	hg/inc/affy120KDetails.h	/^    char sequenceA[35];	\/* The A allele with flanking sequence *\/$/;"	m	struct:affy120KDetails
sequenceA	hg/inc/affyGenoDetails.h	/^    char sequenceA[35];	\/* The A allele with flanking sequence *\/$/;"	m	struct:affyGenoDetails
sequenceB	hg/inc/affy10KDetails.h	/^    char sequenceB[35];	\/* The B allele with flanking sequence *\/$/;"	m	struct:affy10KDetails
sequenceB	hg/inc/affy120KDetails.h	/^    char sequenceB[35];	\/* The B allele with flanking sequence *\/$/;"	m	struct:affy120KDetails
sequenceB	hg/inc/affyGenoDetails.h	/^    char sequenceB[35];	\/* The B allele with flanking sequence *\/$/;"	m	struct:affyGenoDetails
serverList	inc/gfWebLib.h	/^    struct gfServerAt *serverList;  \/* List of servers. *\/$/;"	m	struct:gfWebConfig	typeref:struct:gfWebConfig::gfServerAt
sessionId	hg/inc/cart.h	/^   unsigned int sessionId;	\/* Session ID in database. *\/$/;"	m	struct:cart
sessionInfo	hg/inc/cart.h	/^   struct cartDb *sessionInfo;	\/* Info on session. *\/$/;"	m	struct:cart	typeref:struct:cart::cartDb
sessionTouchLastUse	hg/lib/cart.c	/^void sessionTouchLastUse(struct sqlConnection *conn, char *encUserName,$/;"	f
sessionVar	hg/lib/cart.c	/^static char *sessionVar = "hgsid";	\/* Name of cgi variable session is stored in. *\/$/;"	v	file:
setAuthorization	lib/net.c	/^void setAuthorization(struct netParsedUrl npu, char *authHeader, struct dyString *dy)$/;"	f
setBbiViewLimits	hg/lib/customFactory.c	/^void setBbiViewLimits(struct customTrack *track)$/;"	f
setBits	hg/lib/altGraphX.c	/^static void setBits(struct spaceSaver *ss, struct spliceEdge *eg, int pos, double scale)$/;"	f	file:
setBoundaryMB	lib/mime.c	/^static void setBoundaryMB(struct mimeBuf *b, char *boundary)$/;"	f	file:
setChainBounds	lib/chainConnect.c	/^void setChainBounds(struct chain *chain)$/;"	f
setChromConstraint	hg/inc/wiggle.h	/^    void (*setChromConstraint)(struct wiggleDataStream *wds, char *chr);$/;"	m	struct:wiggleDataStream
setChromConstraint	hg/lib/wigDataStream.c	/^static void setChromConstraint(struct wiggleDataStream *wds, char *chr)$/;"	f	file:
setChromName	hg/lib/wigAsciiToBinary.c	/^static void setChromName(char *spec)$/;"	f	file:
setClip	inc/vGfx.h	/^    void (*setClip)(void *v, int x, int y, int width, int height);$/;"	m	struct:vGfx
setColumns	inc/annoStreamer.h	/^    void (*setColumns)(struct annoStreamer *self, struct annoColumn *newColumns);$/;"	m	struct:annoStreamer
setCompareByte	hg/lib/wigDataStream.c	/^static void setCompareByte(struct wiggleDataStream *wds,$/;"	f	file:
setCurrentDir	lib/osunix.c	/^void setCurrentDir(char *newDir)$/;"	f
setCurrentDir	lib/oswin9x.c	/^void setCurrentDir(char *newDir)$/;"	f
setDataConstraint	hg/inc/wiggle.h	/^    void (*setDataConstraint)(struct wiggleDataStream *wds,$/;"	m	struct:wiggleDataStream
setDataConstraint	hg/lib/wigDataStream.c	/^static void setDataConstraint(struct wiggleDataStream *wds,$/;"	f	file:
setDataSpan	hg/lib/wigAsciiToBinary.c	/^static void setDataSpan(char *spec)$/;"	f	file:
setDataValue	hg/lib/wigAsciiToBinary.c	/^static void setDataValue(double val)$/;"	f	file:
setDbTable	hg/lib/wigDataStream.c	/^static void setDbTable(struct wiggleDataStream *wds, char * db, char *table)$/;"	f	file:
setDefaultMemHandler	lib/memalloc.c	/^void setDefaultMemHandler()$/;"	f
setEodMB	lib/mime.c	/^static void setEodMB(struct mimeBuf *b)$/;"	f	file:
setEopMB	lib/mime.c	/^static void setEopMB(struct mimeBuf *b)$/;"	f	file:
setFfExtendThroughN	jkOwnLib/fuzzyFind.c	/^void setFfExtendThroughN(boolean val)$/;"	f
setFfIntronMax	lib/ffScore.c	/^void setFfIntronMax(int value)$/;"	f
setFilters	inc/annoStreamer.h	/^    void (*setFilters)(struct annoStreamer *self, struct annoFilter *newFilters);$/;"	m	struct:annoStreamer
setFixedStart	hg/lib/wigAsciiToBinary.c	/^static void setFixedStart(char *spec)$/;"	f	file:
setHint	inc/vGfx.h	/^    void (*setHint)(void *v, char *hint, char *value);$/;"	m	struct:vGfx
setInitialCachedDataBounds	lib/udc.c	/^static void setInitialCachedDataBounds(struct udcFile *file, boolean useCacheInfo)$/;"	f	file:
setMaxAlloc	lib/memalloc.c	/^void setMaxAlloc(size_t s)$/;"	f
setMaxOutput	hg/inc/wiggle.h	/^    void (*setMaxOutput)(struct wiggleDataStream *wds,$/;"	m	struct:wiggleDataStream
setMaxOutput	hg/lib/wigDataStream.c	/^static void setMaxOutput(struct wiggleDataStream *wds,$/;"	f	file:
setName	inc/pslTbl.h	/^    char *setName;                     \/* name identifying the set of psl.$/;"	m	struct:pslTbl
setOptions	inc/annoFormatter.h	/^    void (*setOptions)(struct annoFormatter *self, struct annoFormatterOption *options);$/;"	m	struct:annoFormatter
setOptions	lib/options.c	/^static void setOptions(struct hash *hash)$/;"	f	file:
setPositionConstraint	hg/inc/wiggle.h	/^    void (*setPositionConstraint)(struct wiggleDataStream *wds,$/;"	m	struct:wiggleDataStream
setPositionConstraint	hg/lib/wigDataStream.c	/^static void setPositionConstraint(struct wiggleDataStream *wds,$/;"	f	file:
setProgram	lib/log.c	/^static void setProgram(char* program)$/;"	f	file:
setPslBounds	lib/pslTransMap.c	/^static void setPslBounds(struct psl* mappedPsl)$/;"	f	file:
setPtIfNotNull	hg/lib/pcrResult.c	20;"	d	file:
setQuery	inc/annoStreamer.h	/^    void (*setQuery)(struct annoStreamer *self, struct annoGratorQuery *query);$/;"	m	struct:annoStreamer
setRangePlusExtra	hg/lib/featureBits.c	/^static void setRangePlusExtra(char *db, struct featureBits **pList, $/;"	f	file:
setRegion	inc/annoStreamer.h	/^    void (*setRegion)(struct annoStreamer *self, char *chrom, uint rStart, uint rEnd);$/;"	m	struct:annoStreamer
setSpanConstraint	hg/inc/wiggle.h	/^    void (*setSpanConstraint)(struct wiggleDataStream *wds, unsigned span);$/;"	m	struct:wiggleDataStream
setSpanConstraint	hg/lib/wigDataStream.c	/^static void setSpanConstraint(struct wiggleDataStream *wds, unsigned span)$/;"	f	file:
setStepSize	hg/lib/wigAsciiToBinary.c	/^static void setStepSize(char *spec)$/;"	f	file:
setThemeFromCart	hg/lib/cart.c	/^void setThemeFromCart(struct cart *cart) $/;"	f
setUdcCacheDir	hg/lib/hui.c	/^void setUdcCacheDir()$/;"	f
setWriteMode	inc/vGfx.h	/^    void (*setWriteMode)(void *v, unsigned int writeMode);$/;"	m	struct:vGfx
setting	hg/inc/hui.h	/^    char *setting;$/;"	m	struct:_sortOrder
setting	hg/lib/hui.c	/^    char * setting;$/;"	m	struct:_members	file:
setting	hg/lib/hui.c	/^    char * setting;$/;"	m	struct:_membership	file:
setting	hg/lib/hui.c	/^    char* setting;$/;"	m	struct:_dimensions	file:
setting	hg/lib/hui.c	/^    char* setting;$/;"	m	struct:_dividers	file:
setting	hg/lib/hui.c	/^    char* setting;$/;"	m	struct:_hierarchy	file:
settings	hg/inc/targetDb.h	/^    char *settings;	\/* .ra-formatted metadata *\/$/;"	m	struct:targetDb
settings	hg/inc/trackDb.h	/^    char *settings;	\/* Name\/value pairs for track-specific stuff *\/$/;"	m	struct:trackDb
settings	hg/inc/trackHub.h	/^    struct hash *settings;	\/* Settings from hub.ra file. *\/$/;"	m	struct:trackHub	typeref:struct:trackHub::hash
settingsHash	hg/inc/hgFindSpec.h	/^    struct hash *settingsHash;  \/* Hash for settings. Not saved in database.$/;"	m	struct:hgFindSpec	typeref:struct:hgFindSpec::hash
settingsHash	hg/inc/targetDb.h	/^    struct hash *settingsHash;  \/* Hash for settings. Not saved in database.$/;"	m	struct:targetDb	typeref:struct:targetDb::hash
settingsHash	hg/inc/trackDb.h	/^    struct hash *settingsHash;  \/* Hash for settings. Not saved in database.$/;"	m	struct:trackDb	typeref:struct:trackDb::hash
setupWss	lib/portimpl.c	/^static void setupWss()$/;"	f	file:
sevenStateIx	jkOwnLib/xensmall.c	/^enum sevenStateIx$/;"	g	file:
sftIgnore	hg/inc/bed.h	/^    sftIgnore = 0,$/;"	e	enum:stringFilterType
sftMultiLiteral	hg/inc/bed.h	/^    sftMultiLiteral = 2,$/;"	e	enum:stringFilterType
sftMultiRegexp	hg/inc/bed.h	/^    sftMultiRegexp = 4,$/;"	e	enum:stringFilterType
sftSingleLiteral	hg/inc/bed.h	/^    sftSingleLiteral = 1,$/;"	e	enum:stringFilterType
sftSingleRegexp	hg/inc/bed.h	/^    sftSingleRegexp = 3,$/;"	e	enum:stringFilterType
sgdAbundance	hg/inc/sgdAbundance.h	/^struct sgdAbundance$/;"	s
sgdAbundanceCommaIn	hg/lib/sgdAbundance.c	/^struct sgdAbundance *sgdAbundanceCommaIn(char **pS, struct sgdAbundance *ret)$/;"	f
sgdAbundanceCommaOut	hg/inc/sgdAbundance.h	57;"	d
sgdAbundanceFree	hg/lib/sgdAbundance.c	/^void sgdAbundanceFree(struct sgdAbundance **pEl)$/;"	f
sgdAbundanceFreeList	hg/lib/sgdAbundance.c	/^void sgdAbundanceFreeList(struct sgdAbundance **pList)$/;"	f
sgdAbundanceLoad	hg/lib/sgdAbundance.c	/^struct sgdAbundance *sgdAbundanceLoad(char **row)$/;"	f
sgdAbundanceLoadAll	hg/lib/sgdAbundance.c	/^struct sgdAbundance *sgdAbundanceLoadAll(char *fileName) $/;"	f
sgdAbundanceLoadAllByChar	hg/lib/sgdAbundance.c	/^struct sgdAbundance *sgdAbundanceLoadAllByChar(char *fileName, char chopper) $/;"	f
sgdAbundanceLoadAllByTab	hg/inc/sgdAbundance.h	35;"	d
sgdAbundanceOutput	hg/lib/sgdAbundance.c	/^void sgdAbundanceOutput(struct sgdAbundance *el, FILE *f, char sep, char lastSep) $/;"	f
sgdAbundanceStaticLoad	hg/lib/sgdAbundance.c	/^void sgdAbundanceStaticLoad(char **row, struct sgdAbundance *ret)$/;"	f
sgdAbundanceTabOut	hg/inc/sgdAbundance.h	54;"	d
sgdClone	hg/inc/sgdClone.h	/^struct sgdClone$/;"	s
sgdCloneCommaIn	hg/lib/sgdClone.c	/^struct sgdClone *sgdCloneCommaIn(char **pS, struct sgdClone *ret)$/;"	f
sgdCloneCommaOut	hg/inc/sgdClone.h	59;"	d
sgdCloneFree	hg/lib/sgdClone.c	/^void sgdCloneFree(struct sgdClone **pEl)$/;"	f
sgdCloneFreeList	hg/lib/sgdClone.c	/^void sgdCloneFreeList(struct sgdClone **pList)$/;"	f
sgdCloneLoad	hg/lib/sgdClone.c	/^struct sgdClone *sgdCloneLoad(char **row)$/;"	f
sgdCloneLoadAll	hg/lib/sgdClone.c	/^struct sgdClone *sgdCloneLoadAll(char *fileName) $/;"	f
sgdCloneLoadAllByChar	hg/lib/sgdClone.c	/^struct sgdClone *sgdCloneLoadAllByChar(char *fileName, char chopper) $/;"	f
sgdCloneLoadAllByTab	hg/inc/sgdClone.h	37;"	d
sgdCloneOutput	hg/lib/sgdClone.c	/^void sgdCloneOutput(struct sgdClone *el, FILE *f, char sep, char lastSep) $/;"	f
sgdCloneStaticLoad	hg/lib/sgdClone.c	/^void sgdCloneStaticLoad(char **row, struct sgdClone *ret)$/;"	f
sgdCloneTabOut	hg/inc/sgdClone.h	56;"	d
sgdDescription	hg/inc/sgdDescription.h	/^struct sgdDescription$/;"	s
sgdDescriptionCommaIn	hg/lib/sgdDescription.c	/^struct sgdDescription *sgdDescriptionCommaIn(char **pS, struct sgdDescription *ret)$/;"	f
sgdDescriptionCommaOut	hg/inc/sgdDescription.h	57;"	d
sgdDescriptionFree	hg/lib/sgdDescription.c	/^void sgdDescriptionFree(struct sgdDescription **pEl)$/;"	f
sgdDescriptionFreeList	hg/lib/sgdDescription.c	/^void sgdDescriptionFreeList(struct sgdDescription **pList)$/;"	f
sgdDescriptionLoad	hg/lib/sgdDescription.c	/^struct sgdDescription *sgdDescriptionLoad(char **row)$/;"	f
sgdDescriptionLoadAll	hg/lib/sgdDescription.c	/^struct sgdDescription *sgdDescriptionLoadAll(char *fileName) $/;"	f
sgdDescriptionLoadAllByChar	hg/lib/sgdDescription.c	/^struct sgdDescription *sgdDescriptionLoadAllByChar(char *fileName, char chopper) $/;"	f
sgdDescriptionLoadAllByTab	hg/inc/sgdDescription.h	35;"	d
sgdDescriptionOutput	hg/lib/sgdDescription.c	/^void sgdDescriptionOutput(struct sgdDescription *el, FILE *f, char sep, char lastSep) $/;"	f
sgdDescriptionStaticLoad	hg/lib/sgdDescription.c	/^void sgdDescriptionStaticLoad(char **row, struct sgdDescription *ret)$/;"	f
sgdDescriptionTabOut	hg/inc/sgdDescription.h	54;"	d
sgdOther	hg/inc/sgdOther.h	/^struct sgdOther$/;"	s
sgdOtherCommaIn	hg/lib/sgdOther.c	/^struct sgdOther *sgdOtherCommaIn(char **pS, struct sgdOther *ret)$/;"	f
sgdOtherCommaOut	hg/inc/sgdOther.h	61;"	d
sgdOtherFree	hg/lib/sgdOther.c	/^void sgdOtherFree(struct sgdOther **pEl)$/;"	f
sgdOtherFreeList	hg/lib/sgdOther.c	/^void sgdOtherFreeList(struct sgdOther **pList)$/;"	f
sgdOtherLoad	hg/lib/sgdOther.c	/^struct sgdOther *sgdOtherLoad(char **row)$/;"	f
sgdOtherLoadAll	hg/lib/sgdOther.c	/^struct sgdOther *sgdOtherLoadAll(char *fileName) $/;"	f
sgdOtherLoadAllByChar	hg/lib/sgdOther.c	/^struct sgdOther *sgdOtherLoadAllByChar(char *fileName, char chopper) $/;"	f
sgdOtherLoadAllByTab	hg/inc/sgdOther.h	39;"	d
sgdOtherOutput	hg/lib/sgdOther.c	/^void sgdOtherOutput(struct sgdOther *el, FILE *f, char sep, char lastSep) $/;"	f
sgdOtherStaticLoad	hg/lib/sgdOther.c	/^void sgdOtherStaticLoad(char **row, struct sgdOther *ret)$/;"	f
sgdOtherTabOut	hg/inc/sgdOther.h	58;"	d
shaCleanup	lib/shaRes.c	/^void shaCleanup(struct shaResList *list)$/;"	f
shaFreeNode	lib/shaRes.c	/^static void shaFreeNode(struct shaResNode *node)$/;"	f	file:
shaInit	lib/shaRes.c	/^void shaInit(struct shaResList *list, void (*freeData)(void *pData))$/;"	f
shaLink	lib/shaRes.c	/^void shaLink(struct shaResNode *node)$/;"	f
shaNewNode	lib/shaRes.c	/^struct shaResNode *shaNewNode(struct shaResList *list, char *name, void *data)$/;"	f
shaResList	inc/shaRes.h	/^struct shaResList$/;"	s
shaResNode	inc/shaRes.h	/^struct shaResNode$/;"	s
shaUnlink	lib/shaRes.c	/^void shaUnlink(struct shaResNode *node)$/;"	f
shgcG3Chrom	hg/inc/stsMap.h	/^    char *shgcG3Chrom;	\/* Chromosome (no chr) from Stanford G3 map or 0 if none *\/$/;"	m	struct:stsMap
shgcG3Chrom	hg/inc/stsMarker.h	/^    char *shgcG3Chrom;	\/* Chromosome (no chr) from shgc_g3 map or 0 if none *\/$/;"	m	struct:stsMarker
shgcG3Pos	hg/inc/stsMap.h	/^    float shgcG3Pos;	\/* Position on shgc_g3 map *\/$/;"	m	struct:stsMap
shgcG3Pos	hg/inc/stsMarker.h	/^    float shgcG3Pos;	\/* Position on shgc_g3 map *\/$/;"	m	struct:stsMarker
shgcTngChrom	hg/inc/stsMap.h	/^    char *shgcTngChrom;	\/* Chromosome (no chr) from shgc_tng map or 0 if none *\/$/;"	m	struct:stsMap
shgcTngChrom	hg/inc/stsMarker.h	/^    char *shgcTngChrom;	\/* Chromosome (no chr) from shgc_tng map or 0 if none *\/$/;"	m	struct:stsMarker
shgcTngPos	hg/inc/stsMap.h	/^    float shgcTngPos;	\/* Position on shgc_tng map *\/$/;"	m	struct:stsMap
shgcTngPos	hg/inc/stsMarker.h	/^    float shgcTngPos;	\/* Position on shgc_tng map *\/$/;"	m	struct:stsMarker
shortCircuit	hg/inc/hgFindSpec.h	/^    unsigned char shortCircuit;	\/* If nonzero, and there is a result from this search, jump to the result instead of performing other searches. *\/$/;"	m	struct:hgFindSpec
shortEndState	jkOwnLib/xensmall.c	320;"	d	file:
shortEndState	jkOwnLib/xensmall.c	468;"	d	file:
shortEndState	lib/axtAffine.c	116;"	d	file:
shortEndState	lib/axtAffine.c	188;"	d	file:
shortGffLine	hg/lib/liftOver.c	/^static void shortGffLine(struct lineFile *lf)$/;"	f	file:
shortLabel	hg/inc/growthCondition.h	/^    char *shortLabel;	\/* Short description of growth condition *\/$/;"	m	struct:growthCondition
shortLabel	hg/inc/trackDb.h	/^    char *shortLabel;	\/* Short label displayed on left *\/$/;"	m	struct:trackDb
shortLabel	hg/inc/trackHub.h	/^    char *shortLabel;	\/* Hub short label. Not allocated here. *\/$/;"	m	struct:trackHub
shortLabel	hg/inc/trackTable.h	/^    char *shortLabel;	\/* Short label displayed on left *\/$/;"	m	struct:trackTable
shortLine	lib/apacheLog.c	/^static void shortLine(struct apacheAccessLog **pLl, char *line, $/;"	f	file:
shortName	hg/inc/genoLay.h	/^     char *shortName;	\/* Name w\/out chr prefix. Set before genoLayNew. *\/$/;"	m	struct:genoLayChrom
shortName	inc/ens.h	/^    char *shortName;		\/* 15 letter summary. *\/$/;"	m	struct:ensAnalysis
shortScoreScheme	lib/axt.c	/^static void shortScoreScheme(struct lineFile *lf)$/;"	f	file:
shouldMergeBlocks	hg/lib/genePred.c	/^static boolean shouldMergeBlocks(struct genePred *gene, int iExon,$/;"	f	file:
showConstraints	hg/lib/wigDataStream.c	/^static void showConstraints(struct wiggleDataStream *wds, FILE *fh)$/;"	f	file:
showResolution	hg/lib/wigDataStream.c	/^static void showResolution(double resolution, FILE *fh)$/;"	f	file:
showResolutionNoDownloads	hg/lib/wigDataStream.c	/^static void showResolutionNoDownloads(double resolution, FILE *fh)$/;"	f	file:
showScoreFilter	hg/lib/hui.c	/^static boolean showScoreFilter(struct cart *cart, struct trackDb *tdb, boolean *opened, boolean boxed,$/;"	f	file:
shrspAvg	hg/inc/recombRateRat.h	/^    float shrspAvg;	\/* Calculated SHRSPxBN recombination rate *\/$/;"	m	struct:recombRateRat
shrspChr	hg/inc/stsInfoRat.h	/^    char *shrspChr;	\/* Chromosome in Genetic map *\/$/;"	m	struct:stsInfoRat
shrspChrom	hg/inc/stsMapRat.h	/^    char *shrspChrom;	\/* Chromosome (no chr) from SHRSPxBN geneticmap or 0 if none *\/$/;"	m	struct:stsMapRat
shrspGeneticPos	hg/inc/stsInfoRat.h	/^    float shrspGeneticPos;	\/* Position in Genetic map *\/$/;"	m	struct:stsInfoRat
shrspName	hg/inc/stsInfoRat.h	/^    char *shrspName;	\/* Name in SHRSP_x_BN *\/$/;"	m	struct:stsInfoRat
shrspPos	hg/inc/stsMapRat.h	/^    float shrspPos;	\/* Position on SHRSPxBN genetic map *\/$/;"	m	struct:stsMapRat
shuffleArrayOfPointers	lib/obscure.c	/^void shuffleArrayOfPointers(void *pointerArray, int arraySize, int shuffleCount)$/;"	f
shuffleList	lib/obscure.c	/^void shuffleList(void *pList, int shuffleCount)$/;"	f
siText	hg/lib/mafGene.c	/^char *siText[MAX_COMPS]; $/;"	v
sid	hg/inc/scopDes.h	/^    char *sid;	\/* Older ID. *\/$/;"	m	struct:scopDes
siftComment	hg/inc/bgiGeneSnp.h	/^    char *siftComment;	\/* Comment from SIFT (if applicable) *\/$/;"	m	struct:bgiGeneSnp
sig	hg/inc/genomeRangeTreeFile.h	/^    bits32 sig;$/;"	m	struct:genomeRangeTreeFile
signal	hg/inc/affyAtlas.h	/^    float signal;	\/* signal of probeset detected *\/$/;"	m	struct:affyAtlas
signalPos	hg/inc/estOrientInfo.h	/^    short signalPos;	\/* Position of start of polyA signal relative to end of EST or 0 if no signal *\/$/;"	m	struct:estOrientInfo
signed32	inc/common.h	114;"	d
silentVaWarn	lib/errabort.c	/^static void silentVaWarn(char *format, va_list args)$/;"	f	file:
sim	hg/inc/geneSimilarities.h	/^    float sim;               \/\/ similarity score (fraction)$/;"	m	struct:geneSim
sim4QueryOut	jkOwnLib/gfOut.c	/^static void sim4QueryOut(struct gfOutput *out, FILE *f)$/;"	f	file:
simpleGaussean	lib/hmmstats.c	/^double simpleGaussean(double x)$/;"	f
simpleNucDiff	hg/inc/simpleNucDiff.h	/^struct simpleNucDiff$/;"	s
simpleNucDiffCommaIn	hg/lib/simpleNucDiff.c	/^struct simpleNucDiff *simpleNucDiffCommaIn(char **pS, struct simpleNucDiff *ret)$/;"	f
simpleNucDiffCommaOut	hg/inc/simpleNucDiff.h	59;"	d
simpleNucDiffFree	hg/lib/simpleNucDiff.c	/^void simpleNucDiffFree(struct simpleNucDiff **pEl)$/;"	f
simpleNucDiffFreeList	hg/lib/simpleNucDiff.c	/^void simpleNucDiffFreeList(struct simpleNucDiff **pList)$/;"	f
simpleNucDiffLoad	hg/lib/simpleNucDiff.c	/^struct simpleNucDiff *simpleNucDiffLoad(char **row)$/;"	f
simpleNucDiffLoadAll	hg/lib/simpleNucDiff.c	/^struct simpleNucDiff *simpleNucDiffLoadAll(char *fileName) $/;"	f
simpleNucDiffLoadAllByChar	hg/lib/simpleNucDiff.c	/^struct simpleNucDiff *simpleNucDiffLoadAllByChar(char *fileName, char chopper) $/;"	f
simpleNucDiffLoadAllByTab	hg/inc/simpleNucDiff.h	37;"	d
simpleNucDiffOutput	hg/lib/simpleNucDiff.c	/^void simpleNucDiffOutput(struct simpleNucDiff *el, FILE *f, char sep, char lastSep) $/;"	f
simpleNucDiffStaticLoad	hg/lib/simpleNucDiff.c	/^void simpleNucDiffStaticLoad(char **row, struct simpleNucDiff *ret)$/;"	f
simpleNucDiffTabOut	hg/inc/simpleNucDiff.h	56;"	d
simpleRepeat	hg/inc/simpleRepeat.h	/^struct simpleRepeat$/;"	s
simpleRepeatCommaIn	hg/lib/simpleRepeat.c	/^struct simpleRepeat *simpleRepeatCommaIn(char **pS, struct simpleRepeat *ret)$/;"	f
simpleRepeatCommaOut	hg/inc/simpleRepeat.h	65;"	d
simpleRepeatFree	hg/lib/simpleRepeat.c	/^void simpleRepeatFree(struct simpleRepeat **pEl)$/;"	f
simpleRepeatFreeList	hg/lib/simpleRepeat.c	/^void simpleRepeatFreeList(struct simpleRepeat **pList)$/;"	f
simpleRepeatLoad	hg/lib/simpleRepeat.c	/^struct simpleRepeat *simpleRepeatLoad(char **row)$/;"	f
simpleRepeatLoadAll	hg/lib/simpleRepeat.c	/^struct simpleRepeat *simpleRepeatLoadAll(char *fileName) $/;"	f
simpleRepeatLoadWhere	hg/lib/simpleRepeat.c	/^struct simpleRepeat *simpleRepeatLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
simpleRepeatOutput	hg/lib/simpleRepeat.c	/^void simpleRepeatOutput(struct simpleRepeat *el, FILE *f, char sep, char lastSep) $/;"	f
simpleRepeatStaticLoad	hg/lib/simpleRepeat.c	/^void simpleRepeatStaticLoad(char **row, struct simpleRepeat *ret)$/;"	f
simpleRepeatTabOut	hg/inc/simpleRepeat.h	62;"	d
simpleTab	hg/inc/search.h	/^    simpleTab   = 0,$/;"	e	enum:searchTab
simplifyPathToDir	lib/osunix.c	/^char *simplifyPathToDir(char *path)$/;"	f
simplifyPathToDirSelfTest	lib/osunix.c	/^void simplifyPathToDirSelfTest()$/;"	f
singleBaseExp	hg/lib/hgFind.c	/^char *singleBaseExp = $/;"	v
singleFilter	lib/annoFilter.c	/^static boolean singleFilter(struct annoFilter *filter, char *word)$/;"	f	file:
singlePos	hg/inc/hgFind.h	/^    struct hgPos *singlePos;      \/* If resolves to a single position, reference to that here. *\/$/;"	m	struct:hgPositions	typeref:struct:hgPositions::hgPos
singlePos	hg/lib/hgFind.c	/^static void singlePos(struct hgPositions *hgp, char *tableDescription,$/;"	f	file:
singleSearch	hg/lib/hgFind.c	/^static boolean singleSearch(char *db, char *term, struct cart *cart, struct hgPositions *hgp)$/;"	f	file:
size	hg/inc/agpGap.h	/^    unsigned size;	\/* size of gap *\/$/;"	m	struct:agpGap
size	hg/inc/borf.h	/^    int size;	\/* Size of mRNA *\/$/;"	m	struct:borf
size	hg/inc/chainNet.h	/^    int size;			\/* Chromosome size. *\/$/;"	m	struct:chainNet
size	hg/inc/chromInfo.h	/^    unsigned size;	\/* Chromosome size *\/$/;"	m	struct:chromInfo
size	hg/inc/chromInserts.h	/^    int size;                   \/* Insert size in bases. *\/$/;"	m	struct:bigInsert
size	hg/inc/ctgPos.h	/^    unsigned size;	\/* Size of contig *\/$/;"	m	struct:ctgPos
size	hg/inc/ctgPos2.h	/^    unsigned size;	\/* Size of contig *\/$/;"	m	struct:ctgPos2
size	hg/inc/cutter.h	/^    unsigned size;	\/* Size of recognition sequence *\/$/;"	m	struct:cutter
size	hg/inc/dnaProbe.h	/^    int size;	\/* size of sequence *\/$/;"	m	struct:dnaProbe
size	hg/inc/exprBed.h	/^    unsigned size;	\/* Size of the feature, may be useful if we cannot place it *\/$/;"	m	struct:exprBed
size	hg/inc/gbExtFile.h	/^    unsigned size;	\/* size *\/$/;"	m	struct:gbExtFile
size	hg/inc/gbSeq.h	/^    unsigned size;	\/* Size of sequence (number of bases) *\/$/;"	m	struct:gbSeq
size	hg/inc/genoLay.h	/^     int size;		\/* Size in bases. Set before genoLayNew. *\/$/;"	m	struct:genoLayChrom
size	hg/inc/microarray.h	/^    int size;$/;"	m	struct:maGrouping
size	hg/inc/qaSeq.h	/^    int size;             \/* Size of sequence. *\/$/;"	m	struct:qaSeq
size	hg/inc/rangeTreeFile.h	/^    bits32 size;$/;"	m	struct:rangeStartSize
size	hg/inc/rnaSecStr.h	/^    unsigned size;	\/* Size of element. *\/$/;"	m	struct:rnaSecStr
size	hg/inc/snpExtFile.h	/^    int size;	\/* byte size of file *\/$/;"	m	struct:snpExtFile
size	hg/inc/tigrOperon.h	/^    unsigned size;	\/* size of operon *\/$/;"	m	struct:tigrOperon
size	hg/inc/traceInfo.h	/^    unsigned size;	\/* Size of read *\/$/;"	m	struct:traceInfo
size	hg/lib/mafGene.c	/^    int size;$/;"	m	struct:speciesInfo	file:
size	inc/bamFile.h	/^    bits32 size;	\/* Chromosome size in bases *\/$/;"	m	struct:bamChromInfo
size	inc/bbiFile.h	/^    bits32 size;	\/* Chromosome size in bases *\/$/;"	m	struct:bbiChromInfo
size	inc/bbiFile.h	/^    bits32 size;	\/* Size of chromosome. *\/$/;"	m	struct:bbiChromUsage
size	inc/common.h	/^   bits64	size;		\/* Size of block. *\/$/;"	m	struct:fileOffsetSize
size	inc/dnaseq.h	/^    int size;             \/* Size of sequence. *\/$/;"	m	struct:dnaSeq
size	inc/fof.h	/^    bits32 size;            \/* Size in file - filled in by server. *\/$/;"	m	struct:fofBatch
size	inc/fof.h	/^    bits32 size;          \/* Size within file. *\/$/;"	m	struct:fofPos
size	inc/hash.h	/^    int size;			\/* Size of table. *\/$/;"	m	struct:hash
size	inc/hgap.h	/^    int size;                   \/* Size in bases. *\/$/;"	m	struct:hgNest
size	inc/hgap.h	/^    int size;                 \/* Size in bases. *\/$/;"	m	struct:hgContig
size	inc/itsa.h	/^    bits64 size;	 \/* Total size to memmap, including header. *\/$/;"	m	struct:itsaFileHeader
size	inc/maf.h	/^    int size;	 \/* Size in sequence (does not include dashes).  *\/$/;"	m	struct:mafComp
size	inc/maf.h	/^    int size;     \/\/ region size$/;"	m	struct:mafRegDef
size	inc/mime.h	/^    off_t size;     \/* determines if local mem or saved to tempfile *\/$/;"	m	struct:mimePart
size	inc/nib.h	/^    int size;		\/* Number of bases in nib. *\/$/;"	m	struct:nibInfo
size	inc/patSpace.h	/^    int size;                  \/* Size of block within sequence. *\/$/;"	m	struct:patClump
size	inc/portable.h	/^    off_t size;		\/* Size in bytes. *\/$/;"	m	struct:fileInfo
size	inc/seg.h	/^	int size;		\/* Size of segment. *\/$/;"	m	struct:segComp
size	inc/spacedColumn.h	/^    int size;	\/* Size of column. *\/$/;"	m	struct:spacedColumn
size	inc/splix.h	/^    bits64 size;	\/* Total size to memmap, including header. *\/$/;"	m	struct:splixFileHeader
size	inc/sufa.h	/^    bits64 size;	\/* Total size to memmap, including header. *\/$/;"	m	struct:sufaFileHeader
size	inc/sufx.h	/^    bits64 size;	 \/* Total size to memmap, including header. *\/$/;"	m	struct:sufxFileHeader
size	inc/twoBit.h	/^    bits32 size;		\/* Size of this sequence. *\/$/;"	m	struct:twoBit
size	jkOwnLib/patSpace.c	/^    int size;           \/* Size of block within subsequence. *\/$/;"	m	struct:blockPos	file:
size	lib/blastOut.c	/^    int size;		    \/* Target size *\/$/;"	m	struct:targetHits	file:
size	lib/bwgCreate.c	/^    bits32 size;		\/* Chromosome size. *\/$/;"	m	struct:bedGraphChrom	file:
size	lib/fof.c	/^    bits32 size;    \/* Sizer within file. *\/$/;"	m	struct:fofRecord	file:
size	lib/gemfont.h	/^WORD	size;		\/* Size in points.  Somehow related to pixel height. *\/$/;"	m	struct:font_hdr
size	lib/memalloc.c	/^    int size;$/;"	m	struct:carefulMemBlock	file:
size	lib/nib.c	/^    bits32 size;	\/* Current size. *\/$/;"	m	struct:nibStream	file:
size	lib/udc.c	/^    bits64 size;		\/* Size of file. *\/$/;"	m	struct:udcFile	file:
size	lib/udc.c	/^    bits64 size;	\/* Remote file size *\/$/;"	m	struct:udcRemoteFileInfo	file:
sizePolyA	hg/inc/estOrientInfo.h	/^    short sizePolyA;	\/* Number of trailing A's *\/$/;"	m	struct:estOrientInfo
sizetToPt	lib/obscure.c	/^void *sizetToPt(size_t i)$/;"	f
skewng_m	lib/gemfont.h	/^WORD	skewng_m;	\/* Skewing mask for italics. If 1 bit rotate this line. 0xaaaa*\/$/;"	m	struct:font_hdr
skipBeyondDelimit	lib/common.c	/^char *skipBeyondDelimit(char *s,char delimit)$/;"	f
skipChr	hg/lib/hCommon.c	/^char *skipChr(char *s)$/;"	f
skipDepth	inc/xap.h	/^   int skipDepth;				\/* Depth beneath which we skip. *\/$/;"	m	struct:xap
skipIgnoringDash	lib/dnautil.c	/^char *skipIgnoringDash(char *a, int size, bool skipTrailingDash)$/;"	f
skipLeadingSpaces	lib/common.c	/^char *skipLeadingSpaces(char *s)$/;"	f
skipLeadingSpacesWithPos	hg/lib/jsHelper.c	/^static void skipLeadingSpacesWithPos(char *s, int *posPtr)$/;"	f	file:
skipNumeric	lib/common.c	/^char *skipNumeric(char *s)$/;"	f
skipOverRequired	lib/rqlParse.c	/^static void skipOverRequired(struct tokenizer *tkz, char *expecting)$/;"	f	file:
skipToNumeric	lib/common.c	/^char *skipToNumeric(char *s)$/;"	f
skipToSpaces	lib/common.c	/^char *skipToSpaces(char *s)$/;"	f
slAddHead	inc/common.h	/^INLINE void slAddHead(void *listPt, void *node)$/;"	f
slAddTail	lib/common.c	/^void slAddTail(void *listPt, void *node)$/;"	f
slCat	lib/common.c	/^void *slCat(void *va, void *vb)$/;"	f
slChoices	hg/inc/hui.h	/^    struct slName *slChoices; \/\/ Values that have been chosen$/;"	m	struct:_filterBy	typeref:struct:_filterBy::slName
slCommentTypes	hg/lib/spDb.c	/^struct slName *slCommentTypes(struct sqlConnection *conn)$/;"	f
slComments	hg/lib/spDb.c	/^struct slName *slComments(struct sqlConnection *conn,$/;"	f
slCount	lib/common.c	/^int slCount(const void *list)$/;"	f
slDouble	inc/common.h	/^struct slDouble$/;"	s
slDoubleBoxWhiskerCalc	lib/common.c	/^void slDoubleBoxWhiskerCalc(struct slDouble *list, double *retMin,$/;"	f
slDoubleCmp	lib/common.c	/^int slDoubleCmp(const void *va, const void *vb)$/;"	f
slDoubleMedian	lib/common.c	/^double slDoubleMedian(struct slDouble *list)$/;"	f
slDoubleNew	lib/common.c	/^struct slDouble *slDoubleNew(double x)$/;"	f
slElementFromIx	lib/common.c	/^void *slElementFromIx(void *list, int ix)$/;"	f
slFreeList	lib/common.c	/^void slFreeList(void *listPt)$/;"	f
slInt	inc/common.h	/^struct slInt$/;"	s
slIntCmp	lib/common.c	/^int slIntCmp(const void *va, const void *vb)$/;"	f
slIntCmpRev	lib/common.c	/^int slIntCmpRev(const void *va, const void *vb)$/;"	f
slIntFind	lib/common.c	/^struct slInt * slIntFind(struct slInt *list, int target)$/;"	f
slIntNew	lib/common.c	/^struct slInt *slIntNew(int x)$/;"	f
slIxFromElement	lib/common.c	/^int slIxFromElement(void *list, void *el)$/;"	f
slLastEl	lib/common.c	/^void *slLastEl(void *list)$/;"	f
slList	inc/common.h	/^struct slList$/;"	s
slName	inc/common.h	/^struct slName$/;"	s
slNameAddHead	lib/common.c	/^struct slName *slNameAddHead(struct slName **pList, char *name)$/;"	f
slNameAddTail	lib/common.c	/^struct slName *slNameAddTail(struct slName **pList, char *name)$/;"	f
slNameCloneList	lib/common.c	/^struct slName *slNameCloneList(struct slName *list)$/;"	f
slNameCmp	lib/common.c	/^int slNameCmp(const void *va, const void *vb)$/;"	f
slNameCmpCase	lib/common.c	/^int slNameCmpCase(const void *va, const void *vb)$/;"	f
slNameCmpStringsWithEmbeddedNumbers	lib/common.c	/^int slNameCmpStringsWithEmbeddedNumbers(const void *va, const void *vb)$/;"	f
slNameFind	lib/common.c	/^void *slNameFind(void *list, char *string)$/;"	f
slNameFindIx	lib/common.c	/^int slNameFindIx(struct slName *list, char *string)$/;"	f
slNameFree	inc/common.h	515;"	d
slNameFreeList	inc/common.h	518;"	d
slNameInList	lib/common.c	/^boolean slNameInList(struct slName *list, char *string)$/;"	f
slNameInListUseCase	lib/common.c	/^boolean slNameInListUseCase(struct slName *list, char *string)$/;"	f
slNameIntersection	lib/common.c	/^struct slName *slNameIntersection(struct slName *a, struct slName *b)$/;"	f
slNameListFromComma	inc/common.h	574;"	d
slNameListFromString	lib/common.c	/^struct slName *slNameListFromString(char *s, char delimiter)$/;"	f
slNameListFromStringArray	lib/common.c	/^struct slName *slNameListFromStringArray(char *stringArray[], int arraySize)$/;"	f
slNameListOfUniqueWords	lib/common.c	/^struct slName *slNameListOfUniqueWords(char *text,boolean respectQuotes)$/;"	f
slNameListToString	lib/common.c	/^char *slNameListToString(struct slName *list, char delimiter)$/;"	f
slNameLoadReal	lib/common.c	/^struct slName *slNameLoadReal(char *fileName)$/;"	f
slNameNew	inc/common.h	512;"	d
slNameNewN	lib/common.c	/^struct slName *slNameNewN(char *name, int size)$/;"	f
slNameSort	lib/common.c	/^void slNameSort(struct slName **pList)$/;"	f
slNameSortCase	lib/common.c	/^void slNameSortCase(struct slName **pList)$/;"	f
slNameStore	lib/common.c	/^char *slNameStore(struct slName **pList, char *string)$/;"	f
slPair	inc/common.h	/^struct slPair$/;"	s
slPairAdd	lib/common.c	/^void slPairAdd(struct slPair **pList, char *name, void *val)$/;"	f
slPairAtoiCmp	lib/common.c	/^int slPairAtoiCmp(const void *va, const void *vb)$/;"	f
slPairCmp	lib/common.c	/^int slPairCmp(const void *va, const void *vb)$/;"	f
slPairCmpCase	lib/common.c	/^int slPairCmpCase(const void *va, const void *vb)$/;"	f
slPairFind	lib/common.c	/^struct slPair *slPairFind(struct slPair *list, char *name)$/;"	f
slPairFindVal	lib/common.c	/^void *slPairFindVal(struct slPair *list, char *name)$/;"	f
slPairFree	lib/common.c	/^void slPairFree(struct slPair **pEl)$/;"	f
slPairFreeList	lib/common.c	/^void slPairFreeList(struct slPair **pList)$/;"	f
slPairFreeVals	lib/common.c	/^void slPairFreeVals(struct slPair *list)$/;"	f
slPairFreeValsAndList	lib/common.c	/^void slPairFreeValsAndList(struct slPair **pList)$/;"	f
slPairFromString	inc/common.h	655;"	d
slPairIntCmp	lib/common.c	/^int slPairIntCmp(const void *va, const void *vb)$/;"	f
slPairIntSort	lib/common.c	/^void slPairIntSort(struct slPair **pList)$/;"	f
slPairListFromString	lib/common.c	/^struct slPair *slPairListFromString(char *str,boolean respectQuotes)$/;"	f
slPairListToString	lib/common.c	/^char *slPairListToString(struct slPair *list,boolean quoteIfSpaces)$/;"	f
slPairNameToString	lib/common.c	/^char *slPairNameToString(struct slPair *list, char delimiter,boolean quoteIfSpaces)$/;"	f
slPairNew	lib/common.c	/^struct slPair *slPairNew(char *name, void *val)$/;"	f
slPairSortCase	lib/common.c	/^void slPairSortCase(struct slPair **pList)$/;"	f
slPairValAtoiSort	lib/common.c	/^void slPairValAtoiSort(struct slPair **pList)$/;"	f
slPairValCmp	lib/common.c	/^int slPairValCmp(const void *va, const void *vb)$/;"	f
slPairValCmpCase	lib/common.c	/^int slPairValCmpCase(const void *va, const void *vb)$/;"	f
slPairValSort	lib/common.c	/^void slPairValSort(struct slPair **pList)$/;"	f
slPairValSortCase	lib/common.c	/^void slPairValSortCase(struct slPair **pList)$/;"	f
slPopHead	lib/common.c	/^void *slPopHead(void *vListPt)$/;"	f
slPopTail	lib/common.c	/^void *slPopTail(void *vListPt)$/;"	f
slRef	inc/common.h	/^struct slRef$/;"	s
slRefNew	lib/common.c	/^struct slRef *slRefNew(void *val)$/;"	f
slRemoveEl	lib/common.c	/^boolean slRemoveEl(void *vpList, void *vToRemove)$/;"	f
slReverse	lib/common.c	/^void slReverse(void *listPt)$/;"	f
slSafeAddHead	inc/common.h	/^INLINE void slSafeAddHead(void *listPt, void *node)$/;"	f
slSort	lib/common.c	/^void slSort(void *pList, int (*compare )(const void *elem1,  const void *elem2))$/;"	f
slUniqify	lib/common.c	/^void slUniqify(void *pList, int (*compare )(const void *elem1,  const void *elem2), void (*free)())$/;"	f
slValues	hg/inc/hui.h	/^    struct slName *slValues;  \/\/ Values that can be filtered on (All is always implied)$/;"	m	struct:_filterBy	typeref:struct:_filterBy::slName
sleep1000	lib/osunix.c	/^void sleep1000(int milli)$/;"	f
slideIntron	jkOwnLib/ffAliHelp.c	/^static int slideIntron(struct ffAli *left, struct ffAli *right, int orientation)$/;"	f	file:
slog	lib/slog.c	/^int slog(double val)$/;"	f
slot	lib/gifdecomp.c	/^static WORD slot;                          \/* Last read code *\/$/;"	v	file:
slotSizes	inc/splix.h	/^    bits32 *slotSizes;	\/* 4^^12 array of slot sizes.  No deallocation required (in memmap) *\/$/;"	m	struct:splix
slots	inc/splix.h	/^    char **slots;  	\/* 16 M slots corresponding to 12 bases. Actual format of slot is$/;"	m	struct:splix
smallEnds	hg/inc/chr18deletions.h	/^    unsigned *smallEnds;	\/* Small end positions *\/$/;"	m	struct:chr18deletions
smallMiddleExons	jkOwnLib/supStitch.c	/^struct ffAli *smallMiddleExons(struct ffAli *aliList, $/;"	f
smallSize	lib/gapCalc.c	/^    int smallSize; \/* Size of tables for doing quick lookup of small gaps. *\/$/;"	m	struct:gapCalc	file:
smallStarts	hg/inc/chr18deletions.h	/^    unsigned *smallStarts;	\/* Small start positions *\/$/;"	m	struct:chr18deletions
smmoeDropDown	hg/lib/hui.c	/^void smmoeDropDown(char *var, char *curVal)$/;"	f
smmoeEnumToString	hg/lib/hui.c	/^char *smmoeEnumToString(enum stsMapMouseOptEnum x)$/;"	f
smmoeGenetic	hg/inc/hui.h	/^   smmoeGenetic = 0,$/;"	e	enum:stsMapMouseOptEnum
smmoeMgi	hg/inc/hui.h	/^   smmoeMgi = 2,$/;"	e	enum:stsMapMouseOptEnum
smmoeRh	hg/inc/hui.h	/^   smmoeRh = 3,$/;"	e	enum:stsMapMouseOptEnum
smmoeStringToEnum	hg/lib/hui.c	/^enum stsMapMouseOptEnum smmoeStringToEnum(char *string)$/;"	f
smmoeWig	hg/inc/hui.h	/^   smmoeWig = 1,$/;"	e	enum:stsMapMouseOptEnum
smoeDecode	hg/inc/hui.h	/^   smoeDecode = 3,$/;"	e	enum:stsMapOptEnum
smoeDropDown	hg/lib/hui.c	/^void smoeDropDown(char *var, char *curVal)$/;"	f
smoeEnumToString	hg/lib/hui.c	/^char *smoeEnumToString(enum stsMapOptEnum x)$/;"	f
smoeGenethon	hg/inc/hui.h	/^   smoeGenethon = 1,$/;"	e	enum:stsMapOptEnum
smoeGenetic	hg/inc/hui.h	/^   smoeGenetic = 0,$/;"	e	enum:stsMapOptEnum
smoeGm99	hg/inc/hui.h	/^   smoeGm99 = 4,$/;"	e	enum:stsMapOptEnum
smoeMarshfield	hg/inc/hui.h	/^   smoeMarshfield = 2,$/;"	e	enum:stsMapOptEnum
smoeStringToEnum	hg/lib/hui.c	/^enum stsMapOptEnum smoeStringToEnum(char *string)$/;"	f
smoeTng	hg/inc/hui.h	/^   smoeTng = 7,$/;"	e	enum:stsMapOptEnum
smoeWiRh	hg/inc/hui.h	/^   smoeWiRh = 6,$/;"	e	enum:stsMapOptEnum
smoeWiYac	hg/inc/hui.h	/^   smoeWiYac = 5,$/;"	e	enum:stsMapOptEnum
smoothOneGap	jkOwnLib/ffSeedExtend.c	/^static boolean smoothOneGap(struct ffAli *left, struct ffAli *right, struct ffAli *ffList)$/;"	f	file:
smoothSmallGaps	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *smoothSmallGaps(struct dnaSeq *qSeq, struct dnaSeq *tSeq,$/;"	f	file:
smroeDropDown	hg/lib/hui.c	/^void smroeDropDown(char *var, char *curVal)$/;"	f
smroeEnumToString	hg/lib/hui.c	/^char *smroeEnumToString(enum stsMapRatOptEnum x)$/;"	f
smroeFhh	hg/inc/hui.h	/^   smroeFhh = 1,$/;"	e	enum:stsMapRatOptEnum
smroeGenetic	hg/inc/hui.h	/^   smroeGenetic = 0,$/;"	e	enum:stsMapRatOptEnum
smroeRh	hg/inc/hui.h	/^   smroeRh = 3,$/;"	e	enum:stsMapRatOptEnum
smroeShrsp	hg/inc/hui.h	/^   smroeShrsp = 2,$/;"	e	enum:stsMapRatOptEnum
smroeStringToEnum	hg/lib/hui.c	/^enum stsMapRatOptEnum smroeStringToEnum(char *string)$/;"	f
snOnes	hg/lib/qaSeq.c	/^static int snOnes[256], snTens[256];$/;"	v	file:
snTens	hg/lib/qaSeq.c	/^static int snOnes[256], snTens[256];$/;"	v	file:
snoRNAs	hg/inc/snoRNAs.h	/^struct snoRNAs$/;"	s
snoRNAs	hg/lib/snoRNAs.h	/^struct snoRNAs$/;"	s
snoRNAsCommaIn	hg/lib/snoRNAs.c	/^struct snoRNAs *snoRNAsCommaIn(char **pS, struct snoRNAs *ret)$/;"	f
snoRNAsCommaOut	hg/inc/snoRNAs.h	72;"	d
snoRNAsCommaOut	hg/lib/snoRNAs.h	72;"	d
snoRNAsFree	hg/lib/snoRNAs.c	/^void snoRNAsFree(struct snoRNAs **pEl)$/;"	f
snoRNAsFreeList	hg/lib/snoRNAs.c	/^void snoRNAsFreeList(struct snoRNAs **pList)$/;"	f
snoRNAsLoad	hg/lib/snoRNAs.c	/^struct snoRNAs *snoRNAsLoad(char **row)$/;"	f
snoRNAsLoadAll	hg/lib/snoRNAs.c	/^struct snoRNAs *snoRNAsLoadAll(char *fileName) $/;"	f
snoRNAsLoadAllByChar	hg/lib/snoRNAs.c	/^struct snoRNAs *snoRNAsLoadAllByChar(char *fileName, char chopper) $/;"	f
snoRNAsLoadAllByTab	hg/inc/snoRNAs.h	50;"	d
snoRNAsLoadAllByTab	hg/lib/snoRNAs.h	50;"	d
snoRNAsOutput	hg/lib/snoRNAs.c	/^void snoRNAsOutput(struct snoRNAs *el, FILE *f, char sep, char lastSep) $/;"	f
snoRNAsStaticLoad	hg/lib/snoRNAs.c	/^void snoRNAsStaticLoad(char **row, struct snoRNAs *ret)$/;"	f
snoRNAsTabOut	hg/inc/snoRNAs.h	69;"	d
snoRNAsTabOut	hg/lib/snoRNAs.h	69;"	d
snoScore	hg/inc/snoRNAs.h	/^    float snoScore;	\/* snoscan score *\/$/;"	m	struct:snoRNAs
snoScore	hg/lib/snoRNAs.h	/^    float snoScore;	\/* snoscan score *\/$/;"	m	struct:snoRNAs
snof	inc/snof.h	/^struct snof$/;"	s
snof	inc/wormdna.h	/^    struct snof *snof;$/;"	m	struct:wormGdfCache	typeref:struct:wormGdfCache::snof
snofClose	lib/snof.c	/^void snofClose(struct snof **pSnof)$/;"	f
snofCmp	lib/snof.c	/^static int snofCmp(char *prefix, char *name, int maxSize, boolean isPrefix)$/;"	f	file:
snofDupeOkIndex	lib/snofmake.c	/^boolean snofDupeOkIndex(FILE *inFile, char *outName, $/;"	f
snofElementCount	lib/snof.c	/^int snofElementCount(struct snof *snof)$/;"	f
snofFindFirstStartingWith	lib/snof.c	/^boolean snofFindFirstStartingWith(struct snof *snof, char *prefix, int prefixSize,$/;"	f
snofFindOffset	lib/snof.c	/^boolean snofFindOffset(struct snof *snof, char *name, long *pOffset)$/;"	f
snofMakeIndex	lib/snofmake.c	/^boolean snofMakeIndex(FILE *inFile, char *outName, $/;"	f
snofMustOpen	lib/snof.c	/^struct snof *snofMustOpen(char *indexName)$/;"	f
snofNameAtIx	lib/snof.c	/^char *snofNameAtIx(struct snof *snof, int ix)$/;"	f
snofNameOffsetAtIx	lib/snof.c	/^void snofNameOffsetAtIx(struct snof *snof, int ix, char **pName, long *pOffset)$/;"	f
snofOffsetAtIx	lib/snof.c	/^long snofOffsetAtIx(struct snof *snof, int ix)$/;"	f
snofOpen	lib/snof.c	/^struct snof *snofOpen(char *indexName)$/;"	f
snofSearch	lib/snof.c	/^static boolean snofSearch(struct snof *snof, char *name, int nameSize, $/;"	f	file:
snofSignature	lib/snofsig.c	/^void snofSignature(char **rSig, int *rSigSize)$/;"	f
snoscanOutput	hg/inc/snoRNAs.h	/^    char *snoscanOutput;	\/* Full snoscan output for snoRNA *\/$/;"	m	struct:snoRNAs
snoscanOutput	hg/lib/snoRNAs.h	/^    char *snoscanOutput;	\/* Full snoscan output for snoRNA *\/$/;"	m	struct:snoRNAs
snp	hg/inc/snp.h	/^struct snp$/;"	s
snp125	hg/inc/snp125.h	/^struct snp125$/;"	s
snp125ClassArraySize	hg/lib/snp125Ui.c	/^int snp125ClassArraySize   = ArraySize(snp125ClassLabels);$/;"	v
snp125ClassDataName	hg/lib/snp125Ui.c	/^char *snp125ClassDataName[] = {$/;"	v
snp125ClassDefault	hg/lib/snp125Ui.c	/^char *snp125ClassDefault[] = {$/;"	v
snp125ClassLabels	hg/lib/snp125Ui.c	/^char *snp125ClassLabels[] = {$/;"	v
snp125ClassOldColorVars	hg/lib/snp125Ui.c	/^char *snp125ClassOldColorVars[] = {$/;"	v
snp125ClassOldIncludeVars	hg/lib/snp125Ui.c	/^static char *snp125ClassOldIncludeVars[] = {$/;"	v	file:
snp125Cmp	hg/lib/snp125.c	/^int snp125Cmp(const void *va, const void *vb)$/;"	f
snp125CodingCoordless	hg/inc/snp125CodingCoordless.h	/^struct snp125CodingCoordless$/;"	s
snp125CodingCoordless1	hg/inc/snp125CodingCoordless.h	/^    snp125CodingCoordless1 = 0,$/;"	e	enum:snp125CodingCoordlessFrame
snp125CodingCoordless2	hg/inc/snp125CodingCoordless.h	/^    snp125CodingCoordless2 = 1,$/;"	e	enum:snp125CodingCoordlessFrame
snp125CodingCoordless3	hg/inc/snp125CodingCoordless.h	/^    snp125CodingCoordless3 = 2,$/;"	e	enum:snp125CodingCoordlessFrame
snp125CodingCoordlessCommaIn	hg/lib/snp125CodingCoordless.c	/^struct snp125CodingCoordless *snp125CodingCoordlessCommaIn(char **pS, struct snp125CodingCoordless *ret)$/;"	f
snp125CodingCoordlessCommaOut	hg/inc/snp125CodingCoordless.h	64;"	d
snp125CodingCoordlessFrame	hg/inc/snp125CodingCoordless.h	/^enum snp125CodingCoordlessFrame$/;"	g
snp125CodingCoordlessFree	hg/lib/snp125CodingCoordless.c	/^void snp125CodingCoordlessFree(struct snp125CodingCoordless **pEl)$/;"	f
snp125CodingCoordlessFreeList	hg/lib/snp125CodingCoordless.c	/^void snp125CodingCoordlessFreeList(struct snp125CodingCoordless **pList)$/;"	f
snp125CodingCoordlessLoad	hg/lib/snp125CodingCoordless.c	/^struct snp125CodingCoordless *snp125CodingCoordlessLoad(char **row)$/;"	f
snp125CodingCoordlessLoadAll	hg/lib/snp125CodingCoordless.c	/^struct snp125CodingCoordless *snp125CodingCoordlessLoadAll(char *fileName) $/;"	f
snp125CodingCoordlessLoadAllByChar	hg/lib/snp125CodingCoordless.c	/^struct snp125CodingCoordless *snp125CodingCoordlessLoadAllByChar(char *fileName, char chopper) $/;"	f
snp125CodingCoordlessLoadAllByTab	hg/inc/snp125CodingCoordless.h	42;"	d
snp125CodingCoordlessOutput	hg/lib/snp125CodingCoordless.c	/^void snp125CodingCoordlessOutput(struct snp125CodingCoordless *el, FILE *f, char sep, char lastSep) $/;"	f
snp125CodingCoordlessTabOut	hg/inc/snp125CodingCoordless.h	61;"	d
snp125Color	hg/inc/snp125Ui.h	/^enum snp125Color {$/;"	g
snp125ColorArraySize	hg/lib/snp125Ui.c	/^int snp125ColorArraySize = ArraySize(snp125ColorLabel);$/;"	v
snp125ColorBlack	hg/inc/snp125Ui.h	/^    snp125ColorBlack,$/;"	e	enum:snp125Color
snp125ColorBlue	hg/inc/snp125Ui.h	/^    snp125ColorBlue,$/;"	e	enum:snp125Color
snp125ColorGray	hg/inc/snp125Ui.h	/^    snp125ColorGray,$/;"	e	enum:snp125Color
snp125ColorGreen	hg/inc/snp125Ui.h	/^    snp125ColorGreen,$/;"	e	enum:snp125Color
snp125ColorLabel	hg/lib/snp125Ui.c	/^char *snp125ColorLabel[] = {$/;"	v
snp125ColorRed	hg/inc/snp125Ui.h	/^    snp125ColorRed,$/;"	e	enum:snp125Color
snp125ColorSource	hg/inc/snp125Ui.h	/^enum snp125ColorSource {$/;"	g
snp125ColorSourceAlleleFreq	hg/inc/snp125Ui.h	/^    snp125ColorSourceAlleleFreq,$/;"	e	enum:snp125ColorSource
snp125ColorSourceArraySize	hg/lib/snp125Ui.c	/^int snp125ColorSourceArraySize   = ArraySize(snp125ColorSourceLabels);$/;"	v
snp125ColorSourceBitfields	hg/inc/snp125Ui.h	/^    snp125ColorSourceBitfields,$/;"	e	enum:snp125ColorSource
snp125ColorSourceClass	hg/inc/snp125Ui.h	/^    snp125ColorSourceClass,$/;"	e	enum:snp125ColorSource
snp125ColorSourceExceptions	hg/inc/snp125Ui.h	/^    snp125ColorSourceExceptions,$/;"	e	enum:snp125ColorSource
snp125ColorSourceFromCart	hg/lib/snp125Ui.c	/^enum snp125ColorSource snp125ColorSourceFromCart(struct cart *cart, struct trackDb *tdb)$/;"	f
snp125ColorSourceFunc	hg/inc/snp125Ui.h	/^    snp125ColorSourceFunc,$/;"	e	enum:snp125ColorSource
snp125ColorSourceLabels	hg/lib/snp125Ui.c	/^char *snp125ColorSourceLabels[] = {$/;"	v
snp125ColorSourceLocType	hg/inc/snp125Ui.h	/^    snp125ColorSourceLocType,$/;"	e	enum:snp125ColorSource
snp125ColorSourceMolType	hg/inc/snp125Ui.h	/^    snp125ColorSourceMolType,$/;"	e	enum:snp125ColorSource
snp125ColorSourceOldVar	hg/lib/snp125Ui.c	/^char *snp125ColorSourceOldVar = "snp125ColorSource";$/;"	v
snp125ColorSourceToLabel	hg/lib/snp125Ui.c	/^char *snp125ColorSourceToLabel(struct trackDb *tdb, enum snp125ColorSource cs)$/;"	f
snp125ColorSourceValid	hg/inc/snp125Ui.h	/^    snp125ColorSourceValid,$/;"	e	enum:snp125ColorSource
snp125CommaIn	hg/lib/snp125.c	/^struct snp125 *snp125CommaIn(char **pS, struct snp125 *ret)$/;"	f
snp125CommaOut	hg/inc/snp125.h	72;"	d
snp125Exceptions	hg/inc/snp125Exceptions.h	/^struct snp125Exceptions$/;"	s
snp125ExceptionsCommaIn	hg/lib/snp125Exceptions.c	/^struct snp125Exceptions *snp125ExceptionsCommaIn(char **pS, struct snp125Exceptions *ret)$/;"	f
snp125ExceptionsCommaOut	hg/inc/snp125Exceptions.h	59;"	d
snp125ExceptionsFree	hg/lib/snp125Exceptions.c	/^void snp125ExceptionsFree(struct snp125Exceptions **pEl)$/;"	f
snp125ExceptionsFreeList	hg/lib/snp125Exceptions.c	/^void snp125ExceptionsFreeList(struct snp125Exceptions **pList)$/;"	f
snp125ExceptionsLoad	hg/lib/snp125Exceptions.c	/^struct snp125Exceptions *snp125ExceptionsLoad(char **row)$/;"	f
snp125ExceptionsLoadAll	hg/lib/snp125Exceptions.c	/^struct snp125Exceptions *snp125ExceptionsLoadAll(char *fileName) $/;"	f
snp125ExceptionsLoadAllByChar	hg/lib/snp125Exceptions.c	/^struct snp125Exceptions *snp125ExceptionsLoadAllByChar(char *fileName, char chopper) $/;"	f
snp125ExceptionsLoadAllByTab	hg/inc/snp125Exceptions.h	37;"	d
snp125ExceptionsOutput	hg/lib/snp125Exceptions.c	/^void snp125ExceptionsOutput(struct snp125Exceptions *el, FILE *f, char sep, char lastSep) $/;"	f
snp125ExceptionsStaticLoad	hg/lib/snp125Exceptions.c	/^void snp125ExceptionsStaticLoad(char **row, struct snp125Exceptions *ret)$/;"	f
snp125ExceptionsTabOut	hg/inc/snp125Exceptions.h	56;"	d
snp125ExceptionsTableCreate	hg/lib/snp125Exceptions.c	/^void snp125ExceptionsTableCreate(struct sqlConnection *conn)$/;"	f
snp125Extended	hg/inc/snp125.h	/^struct snp125Extended$/;"	s
snp125ExtendedNames	hg/lib/snp125Ui.c	/^boolean snp125ExtendedNames = TRUE;$/;"	v
snp125FilterFromCart	hg/lib/snp125Ui.c	/^struct slName *snp125FilterFromCart(struct cart *cart, char *track, char *attribute,$/;"	f
snp125Free	hg/lib/snp125.c	/^void snp125Free(struct snp125 **pEl)$/;"	f
snp125FreeList	hg/lib/snp125.c	/^void snp125FreeList(struct snp125 **pList)$/;"	f
snp125FuncArraySize	hg/lib/snp125Ui.c	/^int snp125FuncArraySize   = ArraySize(snp125FuncLabels);$/;"	v
snp125FuncDataName	hg/lib/snp125Ui.c	/^char *snp125FuncDataName[] = {$/;"	v
snp125FuncDataSynonyms	hg/lib/snp125Ui.c	/^char **snp125FuncDataSynonyms[] = {$/;"	v
snp125FuncDefault	hg/lib/snp125Ui.c	/^char *snp125FuncDefault[] = {$/;"	v
snp125FuncLabels	hg/lib/snp125Ui.c	/^char *snp125FuncLabels[] = {$/;"	v
snp125FuncOldColorVars	hg/lib/snp125Ui.c	/^char *snp125FuncOldColorVars[] = {$/;"	v
snp125FuncOldIncludeVars	hg/lib/snp125Ui.c	/^static char *snp125FuncOldIncludeVars[] = {$/;"	v	file:
snp125Load	hg/lib/snp125.c	/^struct snp125 *snp125Load(char **row)$/;"	f
snp125LoadAll	hg/lib/snp125.c	/^struct snp125 *snp125LoadAll(char *fileName) $/;"	f
snp125LoadAllByChar	hg/lib/snp125.c	/^struct snp125 *snp125LoadAllByChar(char *fileName, char chopper) $/;"	f
snp125LoadAllByTab	hg/inc/snp125.h	50;"	d
snp125LocTypeArraySize	hg/lib/snp125Ui.c	/^int snp125LocTypeArraySize   = ArraySize(snp125LocTypeLabels);$/;"	v
snp125LocTypeDataName	hg/lib/snp125Ui.c	/^char *snp125LocTypeDataName[] = {$/;"	v
snp125LocTypeDefault	hg/lib/snp125Ui.c	/^char *snp125LocTypeDefault[] = {$/;"	v
snp125LocTypeLabels	hg/lib/snp125Ui.c	/^char *snp125LocTypeLabels[] = {$/;"	v
snp125LocTypeOldColorVars	hg/lib/snp125Ui.c	/^char *snp125LocTypeOldColorVars[] = {$/;"	v
snp125LocTypeOldIncludeVars	hg/lib/snp125Ui.c	/^static char *snp125LocTypeOldIncludeVars[] = {$/;"	v	file:
snp125MolTypeArraySize	hg/lib/snp125Ui.c	/^int snp125MolTypeArraySize   = ArraySize(snp125MolTypeLabels);$/;"	v
snp125MolTypeDataName	hg/lib/snp125Ui.c	/^char *snp125MolTypeDataName[] = {$/;"	v
snp125MolTypeDefault	hg/lib/snp125Ui.c	/^char *snp125MolTypeDefault[] = {$/;"	v
snp125MolTypeLabels	hg/lib/snp125Ui.c	/^char *snp125MolTypeLabels[] = {$/;"	v
snp125MolTypeOldColorVars	hg/lib/snp125Ui.c	/^char *snp125MolTypeOldColorVars[] = {$/;"	v
snp125MolTypeOldIncludeVars	hg/lib/snp125Ui.c	/^static char *snp125MolTypeOldIncludeVars[] = {$/;"	v	file:
snp125OldColorVarToNew	hg/lib/snp125Ui.c	/^char *snp125OldColorVarToNew(char *oldVar, char *attribute)$/;"	f
snp125OrthoTable	hg/lib/snp125Ui.c	/^char *snp125OrthoTable(struct trackDb *tdb, int *retSpeciesCount)$/;"	f
snp125Output	hg/lib/snp125.c	/^void snp125Output(struct snp125 *el, FILE *f, char sep, char lastSep) $/;"	f
snp125StaticLoad	hg/lib/snp125.c	/^void snp125StaticLoad(char **row, struct snp125 *ret)$/;"	f
snp125TabOut	hg/inc/snp125.h	69;"	d
snp125TableCreate	hg/lib/snp125.c	/^void snp125TableCreate(struct sqlConnection *conn, char *tableName)$/;"	f
snp125ValidArraySize	hg/lib/snp125Ui.c	/^int snp125ValidArraySize   = ArraySize(snp125ValidLabels);$/;"	v
snp125ValidDataName	hg/lib/snp125Ui.c	/^char *snp125ValidDataName[] = {$/;"	v
snp125ValidDefault	hg/lib/snp125Ui.c	/^char *snp125ValidDefault[] = {$/;"	v
snp125ValidLabels	hg/lib/snp125Ui.c	/^char *snp125ValidLabels[] = {$/;"	v
snp125ValidOldColorVars	hg/lib/snp125Ui.c	/^char *snp125ValidOldColorVars[] = {$/;"	v
snp125ValidOldIncludeVars	hg/lib/snp125Ui.c	/^static char *snp125ValidOldIncludeVars[] = {$/;"	v	file:
snp128ColorSourceArraySize	hg/lib/snp125Ui.c	/^int snp128ColorSourceArraySize   = ArraySize(snp128ColorSourceLabels);$/;"	v
snp128ColorSourceLabels	hg/lib/snp125Ui.c	/^char *snp128ColorSourceLabels[] = {$/;"	v
snp132BitfieldArraySize	hg/lib/snp125Ui.c	/^int snp132BitfieldArraySize = ArraySize(snp132BitfieldLabels);$/;"	v
snp132BitfieldDataName	hg/lib/snp125Ui.c	/^char *snp132BitfieldDataName[] = {$/;"	v
snp132BitfieldDefault	hg/lib/snp125Ui.c	/^char *snp132BitfieldDefault[] = {$/;"	v
snp132BitfieldLabels	hg/lib/snp125Ui.c	/^char *snp132BitfieldLabels[] = {$/;"	v
snp132BitfieldVarName	hg/lib/snp125Ui.c	/^char *snp132BitfieldVarName[] = {$/;"	v
snp132ColorSourceArraySize	hg/lib/snp125Ui.c	/^int snp132ColorSourceArraySize   = ArraySize(snp132ColorSourceLabels);$/;"	v
snp132ColorSourceLabels	hg/lib/snp125Ui.c	/^char *snp132ColorSourceLabels[] = {$/;"	v
snp132ExceptionArraySize	hg/lib/snp125Ui.c	/^int snp132ExceptionArraySize = ArraySize(snp132ExceptionLabels);$/;"	v
snp132ExceptionDefault	hg/lib/snp125Ui.c	/^char *snp132ExceptionDefault[] = {$/;"	v
snp132ExceptionLabels	hg/lib/snp125Ui.c	/^char *snp132ExceptionLabels[] = {$/;"	v
snp132ExceptionVarName	hg/lib/snp125Ui.c	/^char *snp132ExceptionVarName[] = {$/;"	v
snp132Ext	hg/inc/snp132Ext.h	/^struct snp132Ext$/;"	s
snp132ExtCommaIn	hg/lib/snp132Ext.c	/^struct snp132Ext *snp132ExtCommaIn(char **pS, struct snp132Ext *ret)$/;"	f
snp132ExtCommaOut	hg/inc/snp132Ext.h	75;"	d
snp132ExtFree	hg/lib/snp132Ext.c	/^void snp132ExtFree(struct snp132Ext **pEl)$/;"	f
snp132ExtFreeList	hg/lib/snp132Ext.c	/^void snp132ExtFreeList(struct snp132Ext **pList)$/;"	f
snp132ExtLoad	hg/lib/snp132Ext.c	/^struct snp132Ext *snp132ExtLoad(char **row)$/;"	f
snp132ExtLoadAll	hg/lib/snp132Ext.c	/^struct snp132Ext *snp132ExtLoadAll(char *fileName) $/;"	f
snp132ExtLoadAllByChar	hg/lib/snp132Ext.c	/^struct snp132Ext *snp132ExtLoadAllByChar(char *fileName, char chopper) $/;"	f
snp132ExtLoadAllByTab	hg/inc/snp132Ext.h	53;"	d
snp132ExtOutput	hg/lib/snp132Ext.c	/^void snp132ExtOutput(struct snp132Ext *el, FILE *f, char sep, char lastSep) $/;"	f
snp132ExtTabOut	hg/inc/snp132Ext.h	72;"	d
snpAvHetCutoff	hg/lib/snpUi.c	/^float snpAvHetCutoff = 0.0;$/;"	v
snpClassCart	hg/lib/snpUi.c	/^char *snpClassCart[] = {$/;"	v
snpClassCartSize	hg/lib/snpUi.c	/^int snpClassCartSize     = ArraySize(snpClassCart);$/;"	v
snpClassDataName	hg/lib/snpUi.c	/^char *snpClassDataName[] = {$/;"	v
snpClassDataNameSize	hg/lib/snpUi.c	/^int snpClassDataNameSize = ArraySize(snpClassDataName);$/;"	v
snpClassDefault	hg/lib/snpUi.c	/^char *snpClassDefault[] = {$/;"	v
snpClassDefaultSize	hg/lib/snpUi.c	/^int snpClassDefaultSize  = ArraySize(snpClassDefault);$/;"	v
snpClassLabels	hg/lib/snpUi.c	/^char *snpClassLabels[] = {$/;"	v
snpClassLabelsSize	hg/lib/snpUi.c	/^int snpClassLabelsSize   = ArraySize(snpClassLabels);$/;"	v
snpClassStrings	hg/lib/snpUi.c	/^char *snpClassStrings[] = {$/;"	v
snpClassStringsSize	hg/lib/snpUi.c	/^int snpClassStringsSize  = ArraySize(snpClassStrings);$/;"	v
snpColorBlack	hg/inc/snpUi.h	/^    snpColorBlack,$/;"	e	enum:snpColorEnum
snpColorBlue	hg/inc/snpUi.h	/^    snpColorBlue,$/;"	e	enum:snpColorEnum
snpColorEnum	hg/inc/snpUi.h	/^enum snpColorEnum {$/;"	g
snpColorExclude	hg/inc/snpUi.h	/^    snpColorExclude$/;"	e	enum:snpColorEnum
snpColorGreen	hg/inc/snpUi.h	/^    snpColorGreen,$/;"	e	enum:snpColorEnum
snpColorLabel	hg/lib/snpUi.c	/^char *snpColorLabel[] = {$/;"	v
snpColorLabelSize	hg/lib/snpUi.c	/^int snpColorLabelSize = ArraySize(snpColorLabel);$/;"	v
snpColorRed	hg/inc/snpUi.h	/^    snpColorRed,$/;"	e	enum:snpColorEnum
snpColorSourceBlack	hg/inc/snpUi.h	/^    snpColorSourceBlack$/;"	e	enum:snpColorSourceEnum
snpColorSourceCart	hg/lib/snpUi.c	/^char *snpColorSourceCart[] = {$/;"	v
snpColorSourceCartSize	hg/lib/snpUi.c	/^int snpColorSourceCartSize     = ArraySize(snpColorSourceCart);$/;"	v
snpColorSourceClass	hg/inc/snpUi.h	/^    snpColorSourceClass,$/;"	e	enum:snpColorSourceEnum
snpColorSourceDataName	hg/lib/snpUi.c	/^char *snpColorSourceDataName[] = {$/;"	v
snpColorSourceDataNameSize	hg/lib/snpUi.c	/^int snpColorSourceDataNameSize = ArraySize(snpColorSourceDataName);$/;"	v
snpColorSourceDefault	hg/lib/snpUi.c	/^char *snpColorSourceDefault[] = {$/;"	v
snpColorSourceDefaultSize	hg/lib/snpUi.c	/^int snpColorSourceDefaultSize  = ArraySize(snpColorSourceDefault);$/;"	v
snpColorSourceEnum	hg/inc/snpUi.h	/^enum snpColorSourceEnum {$/;"	g
snpColorSourceFunc	hg/inc/snpUi.h	/^    snpColorSourceFunc,$/;"	e	enum:snpColorSourceEnum
snpColorSourceLabels	hg/lib/snpUi.c	/^char *snpColorSourceLabels[] = {$/;"	v
snpColorSourceLabelsSize	hg/lib/snpUi.c	/^int snpColorSourceLabelsSize   = ArraySize(snpColorSourceLabels);$/;"	v
snpColorSourceLocType	hg/inc/snpUi.h	/^    snpColorSourceLocType,$/;"	e	enum:snpColorSourceEnum
snpColorSourceMolType	hg/inc/snpUi.h	/^    snpColorSourceMolType,$/;"	e	enum:snpColorSourceEnum
snpColorSourceSource	hg/inc/snpUi.h	/^    snpColorSourceSource,$/;"	e	enum:snpColorSourceEnum
snpColorSourceStrings	hg/lib/snpUi.c	/^char *snpColorSourceStrings[] = {$/;"	v
snpColorSourceStringsSize	hg/lib/snpUi.c	/^int snpColorSourceStringsSize  = ArraySize(snpColorSourceStrings);$/;"	v
snpColorSourceValid	hg/inc/snpUi.h	/^    snpColorSourceValid,$/;"	e	enum:snpColorSourceEnum
snpCommaIn	hg/lib/snp.c	/^struct snp *snpCommaIn(char **pS, struct snp *ret)$/;"	f
snpCommaOut	hg/inc/snp.h	99;"	d
snpCount	hg/inc/mrnaMisMatch.h	/^    int snpCount;	\/* number of snps in this position *\/$/;"	m	struct:mrnaMisMatch
snpExceptions	hg/inc/snpExceptions.h	/^struct snpExceptions$/;"	s
snpExceptionsCommaIn	hg/lib/snpExceptions.c	/^struct snpExceptions *snpExceptionsCommaIn(char **pS, struct snpExceptions *ret)$/;"	f
snpExceptionsCommaOut	hg/inc/snpExceptions.h	88;"	d
snpExceptionsFree	hg/lib/snpExceptions.c	/^void snpExceptionsFree(struct snpExceptions **pEl)$/;"	f
snpExceptionsFreeList	hg/lib/snpExceptions.c	/^void snpExceptionsFreeList(struct snpExceptions **pList)$/;"	f
snpExceptionsLoad	hg/lib/snpExceptions.c	/^struct snpExceptions *snpExceptionsLoad(char **row)$/;"	f
snpExceptionsLoadAll	hg/lib/snpExceptions.c	/^struct snpExceptions *snpExceptionsLoadAll(char *fileName) $/;"	f
snpExceptionsLoadAllByChar	hg/lib/snpExceptions.c	/^struct snpExceptions *snpExceptionsLoadAllByChar(char *fileName, char chopper) $/;"	f
snpExceptionsLoadAllByTab	hg/inc/snpExceptions.h	41;"	d
snpExceptionsLoadByQuery	hg/lib/snpExceptions.c	/^struct snpExceptions *snpExceptionsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
snpExceptionsOutput	hg/lib/snpExceptions.c	/^void snpExceptionsOutput(struct snpExceptions *el, FILE *f, char sep, char lastSep) $/;"	f
snpExceptionsSaveToDb	hg/lib/snpExceptions.c	/^void snpExceptionsSaveToDb(struct sqlConnection *conn, struct snpExceptions *el, char *tableName, int updateSize)$/;"	f
snpExceptionsSaveToDbEscaped	hg/lib/snpExceptions.c	/^void snpExceptionsSaveToDbEscaped(struct sqlConnection *conn, struct snpExceptions *el, char *tableName, int updateSize)$/;"	f
snpExceptionsStaticLoad	hg/lib/snpExceptions.c	/^void snpExceptionsStaticLoad(char **row, struct snpExceptions *ret)$/;"	f
snpExceptionsTabOut	hg/inc/snpExceptions.h	85;"	d
snpExtFile	hg/inc/snpExtFile.h	/^struct snpExtFile$/;"	s
snpExtFileCommaIn	hg/lib/snpExtFile.c	/^struct snpExtFile *snpExtFileCommaIn(char **pS, struct snpExtFile *ret)$/;"	f
snpExtFileCommaOut	hg/inc/snpExtFile.h	57;"	d
snpExtFileFree	hg/lib/snpExtFile.c	/^void snpExtFileFree(struct snpExtFile **pEl)$/;"	f
snpExtFileFreeList	hg/lib/snpExtFile.c	/^void snpExtFileFreeList(struct snpExtFile **pList)$/;"	f
snpExtFileLoad	hg/lib/snpExtFile.c	/^struct snpExtFile *snpExtFileLoad(char **row)$/;"	f
snpExtFileLoadAll	hg/lib/snpExtFile.c	/^struct snpExtFile *snpExtFileLoadAll(char *fileName) $/;"	f
snpExtFileLoadAllByChar	hg/lib/snpExtFile.c	/^struct snpExtFile *snpExtFileLoadAllByChar(char *fileName, char chopper) $/;"	f
snpExtFileLoadAllByTab	hg/inc/snpExtFile.h	35;"	d
snpExtFileOutput	hg/lib/snpExtFile.c	/^void snpExtFileOutput(struct snpExtFile *el, FILE *f, char sep, char lastSep) $/;"	f
snpExtFileStaticLoad	hg/lib/snpExtFile.c	/^void snpExtFileStaticLoad(char **row, struct snpExtFile *ret)$/;"	f
snpExtFileTabOut	hg/inc/snpExtFile.h	54;"	d
snpExtendedLoad	hg/lib/snp125.c	/^struct snp125Extended *snpExtendedLoad(char **row)$/;"	f
snpFasta	hg/inc/snpFasta.h	/^struct snpFasta$/;"	s
snpFastaCommaIn	hg/lib/snpFasta.c	/^struct snpFasta *snpFastaCommaIn(char **pS, struct snpFasta *ret)$/;"	f
snpFastaCommaOut	hg/inc/snpFasta.h	61;"	d
snpFastaFree	hg/lib/snpFasta.c	/^void snpFastaFree(struct snpFasta **pEl)$/;"	f
snpFastaFreeList	hg/lib/snpFasta.c	/^void snpFastaFreeList(struct snpFasta **pList)$/;"	f
snpFastaLoad	hg/lib/snpFasta.c	/^struct snpFasta *snpFastaLoad(char **row)$/;"	f
snpFastaLoadAll	hg/lib/snpFasta.c	/^struct snpFasta *snpFastaLoadAll(char *fileName) $/;"	f
snpFastaLoadAllByChar	hg/lib/snpFasta.c	/^struct snpFasta *snpFastaLoadAllByChar(char *fileName, char chopper) $/;"	f
snpFastaLoadAllByTab	hg/inc/snpFasta.h	39;"	d
snpFastaOutput	hg/lib/snpFasta.c	/^void snpFastaOutput(struct snpFasta *el, FILE *f, char sep, char lastSep) $/;"	f
snpFastaStaticLoad	hg/lib/snpFasta.c	/^void snpFastaStaticLoad(char **row, struct snpFasta *ret)$/;"	f
snpFastaTabOut	hg/inc/snpFasta.h	58;"	d
snpFastaTableCreate	hg/lib/snpFasta.c	/^void snpFastaTableCreate(struct sqlConnection *conn)$/;"	f
snpFree	hg/lib/snp.c	/^void snpFree(struct snp **pEl)$/;"	f
snpFreeList	hg/lib/snp.c	/^void snpFreeList(struct snp **pList)$/;"	f
snpFuncCart	hg/lib/snpUi.c	/^char *snpFuncCart[] = {$/;"	v
snpFuncCartSize	hg/lib/snpUi.c	/^int snpFuncCartSize     = ArraySize(snpFuncCart);$/;"	v
snpFuncDataName	hg/lib/snpUi.c	/^char *snpFuncDataName[] = {$/;"	v
snpFuncDataNameSize	hg/lib/snpUi.c	/^int snpFuncDataNameSize = ArraySize(snpFuncDataName);$/;"	v
snpFuncDefault	hg/lib/snpUi.c	/^char *snpFuncDefault[] = {$/;"	v
snpFuncDefaultSize	hg/lib/snpUi.c	/^int snpFuncDefaultSize  = ArraySize(snpFuncDefault);$/;"	v
snpFuncLabels	hg/lib/snpUi.c	/^char *snpFuncLabels[] = {$/;"	v
snpFuncLabelsSize	hg/lib/snpUi.c	/^int snpFuncLabelsSize   = ArraySize(snpFuncLabels);$/;"	v
snpFuncStrings	hg/lib/snpUi.c	/^char *snpFuncStrings[] = {$/;"	v
snpFuncStringsSize	hg/lib/snpUi.c	/^int snpFuncStringsSize  = ArraySize(snpFuncStrings);$/;"	v
snpId	hg/inc/lsSnpPdb.h	/^    char *snpId;	\/* dbSNP id *\/$/;"	m	struct:lsSnpPdb
snpLoad	hg/lib/snp.c	/^struct snp *snpLoad(char **row)$/;"	f
snpLoadAll	hg/lib/snp.c	/^struct snp *snpLoadAll(char *fileName) $/;"	f
snpLoadAllByChar	hg/lib/snp.c	/^struct snp *snpLoadAllByChar(char *fileName, char chopper) $/;"	f
snpLoadAllByTab	hg/inc/snp.h	52;"	d
snpLoadByQuery	hg/lib/snp.c	/^struct snp *snpLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
snpLocTypeCart	hg/lib/snpUi.c	/^char *snpLocTypeCart[] = {$/;"	v
snpLocTypeCartSize	hg/lib/snpUi.c	/^int snpLocTypeCartSize     = ArraySize(snpLocTypeCart);$/;"	v
snpLocTypeDataName	hg/lib/snpUi.c	/^char *snpLocTypeDataName[] = {$/;"	v
snpLocTypeDataNameSize	hg/lib/snpUi.c	/^int snpLocTypeDataNameSize = ArraySize(snpLocTypeDataName);$/;"	v
snpLocTypeDefault	hg/lib/snpUi.c	/^char *snpLocTypeDefault[] = {$/;"	v
snpLocTypeDefaultSize	hg/lib/snpUi.c	/^int snpLocTypeDefaultSize  = ArraySize(snpLocTypeDefault);$/;"	v
snpLocTypeLabels	hg/lib/snpUi.c	/^char *snpLocTypeLabels[] = {$/;"	v
snpLocTypeLabelsSize	hg/lib/snpUi.c	/^int snpLocTypeLabelsSize   = ArraySize(snpLocTypeLabels);$/;"	v
snpLocTypeStrings	hg/lib/snpUi.c	/^char *snpLocTypeStrings[] = {$/;"	v
snpLocTypeStringsSize	hg/lib/snpUi.c	/^int snpLocTypeStringsSize  = ArraySize(snpLocTypeStrings);$/;"	v
snpMap	hg/inc/snpMap.h	/^struct snpMap$/;"	s
snpMapCommaIn	hg/lib/snpMap.c	/^struct snpMap *snpMapCommaIn(char **pS, struct snpMap *ret)$/;"	f
snpMapCommaOut	hg/inc/snpMap.h	89;"	d
snpMapFree	hg/lib/snpMap.c	/^void snpMapFree(struct snpMap **pEl)$/;"	f
snpMapFreeList	hg/lib/snpMap.c	/^void snpMapFreeList(struct snpMap **pList)$/;"	f
snpMapLoad	hg/lib/snpMap.c	/^struct snpMap *snpMapLoad(char **row)$/;"	f
snpMapLoadAll	hg/lib/snpMap.c	/^struct snpMap *snpMapLoadAll(char *fileName) $/;"	f
snpMapLoadAllByChar	hg/lib/snpMap.c	/^struct snpMap *snpMapLoadAllByChar(char *fileName, char chopper) $/;"	f
snpMapLoadAllByTab	hg/inc/snpMap.h	42;"	d
snpMapLoadByQuery	hg/lib/snpMap.c	/^struct snpMap *snpMapLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
snpMapOutput	hg/lib/snpMap.c	/^void snpMapOutput(struct snpMap *el, FILE *f, char sep, char lastSep) $/;"	f
snpMapSaveToDb	hg/lib/snpMap.c	/^void snpMapSaveToDb(struct sqlConnection *conn, struct snpMap *el, char *tableName, int updateSize)$/;"	f
snpMapSaveToDbEscaped	hg/lib/snpMap.c	/^void snpMapSaveToDbEscaped(struct sqlConnection *conn, struct snpMap *el, char *tableName, int updateSize)$/;"	f
snpMapSourceCart	hg/lib/snpUi.c	/^char *snpMapSourceCart[] = {$/;"	v
snpMapSourceCartSize	hg/lib/snpUi.c	/^int snpMapSourceCartSize     = ArraySize(snpMapSourceCart);$/;"	v
snpMapSourceDataName	hg/lib/snpUi.c	/^char *snpMapSourceDataName[] = {$/;"	v
snpMapSourceDataNameSize	hg/lib/snpUi.c	/^int snpMapSourceDataNameSize = ArraySize(snpMapSourceDataName);$/;"	v
snpMapSourceDefault	hg/lib/snpUi.c	/^char *snpMapSourceDefault[] = {$/;"	v
snpMapSourceDefaultSize	hg/lib/snpUi.c	/^int snpMapSourceDefaultSize  = ArraySize(snpMapSourceDefault);$/;"	v
snpMapSourceLabels	hg/lib/snpUi.c	/^char *snpMapSourceLabels[] = {$/;"	v
snpMapSourceLabelsSize	hg/lib/snpUi.c	/^int snpMapSourceLabelsSize   = ArraySize(snpMapSourceLabels);$/;"	v
snpMapSourceStrings	hg/lib/snpUi.c	/^char *snpMapSourceStrings[] = {$/;"	v
snpMapSourceStringsSize	hg/lib/snpUi.c	/^int snpMapSourceStringsSize  = ArraySize(snpMapSourceStrings);$/;"	v
snpMapStaticLoad	hg/lib/snpMap.c	/^void snpMapStaticLoad(char **row, struct snpMap *ret)$/;"	f
snpMapTabOut	hg/inc/snpMap.h	86;"	d
snpMapTypeCart	hg/lib/snpUi.c	/^char *snpMapTypeCart[] = {$/;"	v
snpMapTypeCartSize	hg/lib/snpUi.c	/^int snpMapTypeCartSize     = ArraySize(snpMapTypeCart);$/;"	v
snpMapTypeDataName	hg/lib/snpUi.c	/^char *snpMapTypeDataName[] = {$/;"	v
snpMapTypeDataNameSize	hg/lib/snpUi.c	/^int snpMapTypeDataNameSize = ArraySize(snpMapTypeDataName);$/;"	v
snpMapTypeDefault	hg/lib/snpUi.c	/^char *snpMapTypeDefault[] = {$/;"	v
snpMapTypeDefaultSize	hg/lib/snpUi.c	/^int snpMapTypeDefaultSize  = ArraySize(snpMapTypeDefault);$/;"	v
snpMapTypeEnum	hg/inc/snpUi.h	/^enum snpMapTypeEnum {$/;"	g
snpMapTypeExclude	hg/inc/snpUi.h	/^    snpMapTypeExclude$/;"	e	enum:snpMapTypeEnum
snpMapTypeInclude	hg/inc/snpUi.h	/^    snpMapTypeInclude,$/;"	e	enum:snpMapTypeEnum
snpMapTypeLabel	hg/lib/snpUi.c	/^char *snpMapTypeLabel[] = {$/;"	v
snpMapTypeLabelSize	hg/lib/snpUi.c	/^int snpMapTypeLabelSize    = ArraySize(snpMapTypeLabel);$/;"	v
snpMapTypeLabels	hg/lib/snpUi.c	/^char *snpMapTypeLabels[] = {$/;"	v
snpMapTypeLabelsSize	hg/lib/snpUi.c	/^int snpMapTypeLabelsSize   = ArraySize(snpMapTypeLabels);$/;"	v
snpMapTypeStrings	hg/lib/snpUi.c	/^char *snpMapTypeStrings[] = {$/;"	v
snpMapTypeStringsSize	hg/lib/snpUi.c	/^int snpMapTypeStringsSize  = ArraySize(snpMapTypeStrings);$/;"	v
snpMolTypeCart	hg/lib/snpUi.c	/^char *snpMolTypeCart[] = {$/;"	v
snpMolTypeCartSize	hg/lib/snpUi.c	/^int snpMolTypeCartSize     = ArraySize(snpMolTypeCart);$/;"	v
snpMolTypeDataName	hg/lib/snpUi.c	/^char *snpMolTypeDataName[] = {$/;"	v
snpMolTypeDataNameSize	hg/lib/snpUi.c	/^int snpMolTypeDataNameSize = ArraySize(snpMolTypeDataName);$/;"	v
snpMolTypeDefault	hg/lib/snpUi.c	/^char *snpMolTypeDefault[] = {$/;"	v
snpMolTypeDefaultSize	hg/lib/snpUi.c	/^int snpMolTypeDefaultSize  = ArraySize(snpMolTypeDefault);$/;"	v
snpMolTypeLabels	hg/lib/snpUi.c	/^char *snpMolTypeLabels[] = {$/;"	v
snpMolTypeLabelsSize	hg/lib/snpUi.c	/^int snpMolTypeLabelsSize   = ArraySize(snpMolTypeLabels);$/;"	v
snpMolTypeStrings	hg/lib/snpUi.c	/^char *snpMolTypeStrings[] = {$/;"	v
snpMolTypeStringsSize	hg/lib/snpUi.c	/^int snpMolTypeStringsSize  = ArraySize(snpMolTypeStrings);$/;"	v
snpName	hg/inc/bgiGeneSnp.h	/^    char *snpName;	\/* Name of BGI SNP *\/$/;"	m	struct:bgiGeneSnp
snpOutput	hg/lib/snp.c	/^void snpOutput(struct snp *el, FILE *f, char sep, char lastSep) $/;"	f
snpPdbLoc	hg/inc/lsSnpPdb.h	/^    int snpPdbLoc;	\/* location of SNP in PDB chain (1-based AA index) *\/$/;"	m	struct:lsSnpPdb
snpSaveToDb	hg/lib/snp.c	/^void snpSaveToDb(struct sqlConnection *conn, struct snp *el, char *tableName, int updateSize)$/;"	f
snpSaveToDbEscaped	hg/lib/snp.c	/^void snpSaveToDbEscaped(struct sqlConnection *conn, struct snp *el, char *tableName, int updateSize)$/;"	f
snpSeq	hg/inc/bgiSnp.h	/^    char *snpSeq;	\/* 'X->Y' or indel sequence *\/$/;"	m	struct:bgiSnp
snpSeq	hg/inc/snpSeq.h	/^struct snpSeq$/;"	s
snpSeqCommaIn	hg/lib/snpSeq.c	/^struct snpSeq *snpSeqCommaIn(char **pS, struct snpSeq *ret)$/;"	f
snpSeqCommaOut	hg/inc/snpSeq.h	56;"	d
snpSeqFree	hg/lib/snpSeq.c	/^void snpSeqFree(struct snpSeq **pEl)$/;"	f
snpSeqFreeList	hg/lib/snpSeq.c	/^void snpSeqFreeList(struct snpSeq **pList)$/;"	f
snpSeqLoad	hg/lib/snpSeq.c	/^struct snpSeq *snpSeqLoad(char **row)$/;"	f
snpSeqLoadAll	hg/lib/snpSeq.c	/^struct snpSeq *snpSeqLoadAll(char *fileName) $/;"	f
snpSeqLoadAllByChar	hg/lib/snpSeq.c	/^struct snpSeq *snpSeqLoadAllByChar(char *fileName, char chopper) $/;"	f
snpSeqLoadAllByTab	hg/inc/snpSeq.h	34;"	d
snpSeqOutput	hg/lib/snpSeq.c	/^void snpSeqOutput(struct snpSeq *el, FILE *f, char sep, char lastSep) $/;"	f
snpSeqStaticLoad	hg/lib/snpSeq.c	/^void snpSeqStaticLoad(char **row, struct snpSeq *ret)$/;"	f
snpSeqTabOut	hg/inc/snpSeq.h	53;"	d
snpSourceCart	hg/lib/snpUi.c	/^char *snpSourceCart[] = {$/;"	v
snpSourceCartSize	hg/lib/snpUi.c	/^int snpSourceCartSize     = ArraySize(snpSourceCart);$/;"	v
snpSourceDataName	hg/lib/snpUi.c	/^char *snpSourceDataName[] = {$/;"	v
snpSourceDataNameSize	hg/lib/snpUi.c	/^int snpSourceDataNameSize = ArraySize(snpSourceDataName);$/;"	v
snpSourceDefault	hg/lib/snpUi.c	/^char *snpSourceDefault[] = {$/;"	v
snpSourceDefaultSize	hg/lib/snpUi.c	/^int snpSourceDefaultSize  = ArraySize(snpSourceDefault);$/;"	v
snpSourceLabels	hg/lib/snpUi.c	/^char *snpSourceLabels[] = {$/;"	v
snpSourceLabelsSize	hg/lib/snpUi.c	/^int snpSourceLabelsSize   = ArraySize(snpSourceLabels);$/;"	v
snpSourceStrings	hg/lib/snpUi.c	/^char *snpSourceStrings[] = {$/;"	v
snpSourceStringsSize	hg/lib/snpUi.c	/^int snpSourceStringsSize  = ArraySize(snpSourceStrings);$/;"	v
snpStaticLoad	hg/lib/snp.c	/^void snpStaticLoad(char **row, struct snp *ret)$/;"	f
snpTabOut	hg/inc/snp.h	96;"	d
snpTmp	hg/inc/snpTmp.h	/^struct snpTmp$/;"	s
snpTmpCmp	hg/lib/snpTmp.c	/^int snpTmpCmp(const void *va, const void *vb)$/;"	f
snpTmpCommaIn	hg/lib/snpTmp.c	/^struct snpTmp *snpTmpCommaIn(char **pS, struct snpTmp *ret)$/;"	f
snpTmpCommaOut	hg/inc/snpTmp.h	63;"	d
snpTmpFree	hg/lib/snpTmp.c	/^void snpTmpFree(struct snpTmp **pEl)$/;"	f
snpTmpFreeList	hg/lib/snpTmp.c	/^void snpTmpFreeList(struct snpTmp **pList)$/;"	f
snpTmpLoad	hg/lib/snpTmp.c	/^struct snpTmp *snpTmpLoad(char **row)$/;"	f
snpTmpLoadAll	hg/lib/snpTmp.c	/^struct snpTmp *snpTmpLoadAll(char *fileName) $/;"	f
snpTmpLoadAllByChar	hg/lib/snpTmp.c	/^struct snpTmp *snpTmpLoadAllByChar(char *fileName, char chopper) $/;"	f
snpTmpLoadAllByTab	hg/inc/snpTmp.h	41;"	d
snpTmpOutput	hg/lib/snpTmp.c	/^void snpTmpOutput(struct snpTmp *el, FILE *f, char sep, char lastSep) $/;"	f
snpTmpStaticLoad	hg/lib/snpTmp.c	/^void snpTmpStaticLoad(char **row, struct snpTmp *ret)$/;"	f
snpTmpTabOut	hg/inc/snpTmp.h	60;"	d
snpTmpTableCreate	hg/lib/snpTmp.c	/^void snpTmpTableCreate(struct sqlConnection *conn, char *tableName)$/;"	f
snpType	hg/inc/bgiSnp.h	/^    char snpType[2];	\/* S (substitution), I (insertion), or D (deletion) *\/$/;"	m	struct:bgiSnp
snpValidCart	hg/lib/snpUi.c	/^char *snpValidCart[] = {$/;"	v
snpValidCartSize	hg/lib/snpUi.c	/^int snpValidCartSize     = ArraySize(snpValidCart);$/;"	v
snpValidDataName	hg/lib/snpUi.c	/^char *snpValidDataName[] = {$/;"	v
snpValidDataNameSize	hg/lib/snpUi.c	/^int snpValidDataNameSize = ArraySize(snpValidDataName);$/;"	v
snpValidDefault	hg/lib/snpUi.c	/^char *snpValidDefault[] = {$/;"	v
snpValidDefaultSize	hg/lib/snpUi.c	/^int snpValidDefaultSize  = ArraySize(snpValidDefault);$/;"	v
snpValidLabels	hg/lib/snpUi.c	/^char *snpValidLabels[] = {$/;"	v
snpValidLabelsSize	hg/lib/snpUi.c	/^int snpValidLabelsSize   = ArraySize(snpValidLabels);$/;"	v
snpValidStrings	hg/lib/snpUi.c	/^char *snpValidStrings[] = {$/;"	v
snpValidStringsSize	hg/lib/snpUi.c	/^int snpValidStringsSize  = ArraySize(snpValidStrings);$/;"	v
snpVersion	hg/lib/snp125.c	/^int snpVersion(char *track)$/;"	f
snps	hg/inc/mrnaMisMatch.h	/^    char **snps;	\/* list of dbSNP ids *\/$/;"	m	struct:mrnaMisMatch
so	hg/inc/gpFx.h	/^struct soCall so;$/;"	m	struct:gpFx	typeref:struct:gpFx::soCall
soCall	hg/inc/soterm.h	/^struct soCall  \/\/ a single variant effect call$/;"	s
soNumber	hg/inc/soterm.h	/^    uint    soNumber;           \/\/ Sequence Ontology Number$/;"	m	struct:soCall
soOther0	hg/inc/soterm.h	/^	    char    *soOther0;           \/\/ Ancillary detail 0$/;"	m	struct:soCall::__anon12::__anon14
soOther1	hg/inc/soterm.h	/^	    char    *soOther1;           \/\/ Ancillary detail 1$/;"	m	struct:soCall::__anon12::__anon14
soOther2	hg/inc/soterm.h	/^	    char    *soOther2;           \/\/ Ancillary detail 2$/;"	m	struct:soCall::__anon12::__anon14
soOther3	hg/inc/soterm.h	/^	    char    *soOther3;           \/\/ Ancillary detail 3$/;"	m	struct:soCall::__anon12::__anon14
soOther4	hg/inc/soterm.h	/^	    char    *soOther4;           \/\/ Ancillary detail 4$/;"	m	struct:soCall::__anon12::__anon14
soOther5	hg/inc/soterm.h	/^	    char    *soOther5;           \/\/ Ancillary detail 5$/;"	m	struct:soCall::__anon12::__anon14
soOther6	hg/inc/soterm.h	/^	    char    *soOther6;           \/\/ Ancillary detail 6$/;"	m	struct:soCall::__anon12::__anon14
soTerm	hg/inc/soterm.h	/^    } soTerm;$/;"	v	typeref:enum:__anon11
socBlack	inc/seqOut.h	/^    socBlack = 0,		\/* Not aligning. *\/$/;"	e	enum:seqOutColor
socBlue	inc/seqOut.h	/^    socBlue = 1,		\/* Aligning. *\/$/;"	e	enum:seqOutColor
socBrightBlue	inc/seqOut.h	/^    socBrightBlue = 2,		\/* End of an aligning block. *\/$/;"	e	enum:seqOutColor
socOrange	inc/seqOut.h	/^    socOrange = 4,		\/* End of an aligning UTR block. *\/$/;"	e	enum:seqOutColor
socRed	inc/seqOut.h	/^    socRed = 3, 		\/* Aligning UTR. *\/$/;"	e	enum:seqOutColor
socket	hg/lib/jksql.c	/^    char *socket;       \/\/ unix-domain socket path for database server$/;"	m	struct:sqlProfile	file:
socket	inc/rudp.h	/^    int socket;		\/* The associated UDP socket. *\/$/;"	m	struct:rudp
socket	lib/udc.c	/^    int socket;                 \/* Socket descriptor for data connection (or 0). *\/$/;"	m	struct:connInfo	file:
softAbort	hg/lib/web.c	/^void softAbort()$/;"	f
softCount	inc/qa.h	/^    int softCount;	\/* Soft error count. *\/$/;"	m	struct:qaStatistics
softEndArcs	hg/lib/ggGraph.c	/^static boolean softEndArcs(struct geneGraph *gg, int softEndIx)$/;"	f	file:
softEndBits	hg/inc/spDb.h	/^    char softEndBits;\/* 1 for start <, 2 for start ?, 4 for end >, 8 for end ? *\/$/;"	m	struct:spFeature
softEndBleedLimit	hg/lib/ggGraph.c	/^enum{ softEndBleedLimit = 5};  \/* For soft ends allow some bleeding into next intron *\/$/;"	e	enum:__anon2	file:
softEndOverlapConsensusArcs	hg/lib/ggGraph.c	/^static boolean softEndOverlapConsensusArcs(struct geneGraph *gg, struct hash *aliHash, $/;"	f	file:
softPromoter	hg/inc/softPromoter.h	/^struct softPromoter$/;"	s
softPromoterCommaIn	hg/lib/softPromoter.c	/^struct softPromoter *softPromoterCommaIn(char **pS, struct softPromoter *ret)$/;"	f
softPromoterCommaOut	hg/inc/softPromoter.h	53;"	d
softPromoterFree	hg/lib/softPromoter.c	/^void softPromoterFree(struct softPromoter **pEl)$/;"	f
softPromoterFreeList	hg/lib/softPromoter.c	/^void softPromoterFreeList(struct softPromoter **pList)$/;"	f
softPromoterLoad	hg/lib/softPromoter.c	/^struct softPromoter *softPromoterLoad(char **row)$/;"	f
softPromoterLoadAll	hg/lib/softPromoter.c	/^struct softPromoter *softPromoterLoadAll(char *fileName) $/;"	f
softPromoterOutput	hg/lib/softPromoter.c	/^void softPromoterOutput(struct softPromoter *el, FILE *f, char sep, char lastSep) $/;"	f
softPromoterStaticLoad	hg/lib/softPromoter.c	/^void softPromoterStaticLoad(char **row, struct softPromoter *ret)$/;"	f
softPromoterTabOut	hg/inc/softPromoter.h	50;"	d
softStartArcs	hg/lib/ggGraph.c	/^static boolean softStartArcs(struct geneGraph *gg, int softStartIx)$/;"	f	file:
softStartOverlapConsensusArcs	hg/lib/ggGraph.c	/^static boolean softStartOverlapConsensusArcs(struct geneGraph *gg, struct hash *aliHash, $/;"	f	file:
softberryHom	hg/inc/softberryHom.h	/^struct softberryHom$/;"	s
softberryHomCommaIn	hg/lib/softberryHom.c	/^struct softberryHom *softberryHomCommaIn(char **pS, struct softberryHom *ret)$/;"	f
softberryHomCommaOut	hg/inc/softberryHom.h	43;"	d
softberryHomFree	hg/lib/softberryHom.c	/^void softberryHomFree(struct softberryHom **pEl)$/;"	f
softberryHomFreeList	hg/lib/softberryHom.c	/^void softberryHomFreeList(struct softberryHom **pList)$/;"	f
softberryHomLoad	hg/lib/softberryHom.c	/^struct softberryHom *softberryHomLoad(char **row)$/;"	f
softberryHomOutput	hg/lib/softberryHom.c	/^void softberryHomOutput(struct softberryHom *el, FILE *f, char sep, char lastSep) $/;"	f
softberryHomStaticLoad	hg/lib/softberryHom.c	/^void softberryHomStaticLoad(char **row, struct softberryHom *ret)$/;"	f
softberryHomTabOut	hg/inc/softberryHom.h	40;"	d
softlyTrim	hg/lib/ggGraph.c	/^static boolean softlyTrim(struct geneGraph *gg)$/;"	f	file:
softlyTrimConsensus	hg/lib/ggGraph.c	/^boolean softlyTrimConsensus(struct geneGraph *gg, struct hash *aliHash)$/;"	f
softlyTrimEnd	hg/lib/ggGraph.c	/^static boolean softlyTrimEnd(struct geneGraph *gg, int softIx)$/;"	f	file:
softlyTrimStart	hg/lib/ggGraph.c	/^static boolean softlyTrimStart(struct geneGraph *gg, int softIx)$/;"	f	file:
somePath	hg/lib/bioImage.c	/^static char *somePath(struct sqlConnection *conn, int id, char *locationField)$/;"	f	file:
somePath	hg/lib/genePix.c	/^static char *somePath(struct sqlConnection *conn, int id, char *locationField)$/;"	f	file:
somePath	hg/lib/visiGene.c	/^static char *somePath(struct sqlConnection *conn, int id, char *locationField)$/;"	f	file:
sortAndPreCluster	lib/hacTree.c	/^static struct hacTree *sortAndPreCluster(struct hacTree *leafNodes, int *retItemCount,$/;"	f	file:
sortColumn	hg/inc/hui.h	/^} sortColumn;$/;"	t	typeref:struct:_sortColumn
sortFields	hg/inc/fileUi.h	/^    char **sortFields;       \/\/ Array of strings to sort on in sort Order$/;"	m	struct:fileDb
sortOrder	hg/inc/hui.h	/^    char*sortOrder;      \/\/ from cart (eg: CEL=+ FAC=- view=-)$/;"	m	struct:_sortOrder
sortOrderFree	hg/lib/hui.c	/^void sortOrderFree(sortOrder_t **sortOrder)$/;"	f
sortOrderGet	hg/lib/hui.c	/^sortOrder_t *sortOrderGet(struct cart *cart,struct trackDb *parentTdb)$/;"	f
sortOrder_t	hg/inc/hui.h	/^} sortOrder_t;$/;"	t	typeref:struct:_sortOrder
sortResults	hg/inc/wiggle.h	/^    void (*sortResults)(struct wiggleDataStream *wds);$/;"	m	struct:wiggleDataStream
sortResults	hg/lib/wigDataStream.c	/^static void sortResults(struct wiggleDataStream *wds)$/;"	f	file:
sortTdbItemsAndUpdatePriorities	hg/lib/hui.c	/^void sortTdbItemsAndUpdatePriorities(sortableTdbItem **items)$/;"	f
sortWrapCmp	lib/hacTree.c	/^static int sortWrapCmp(const void *v1, const void *v2)$/;"	f	file:
sortWrapper	lib/hacTree.c	/^struct sortWrapper$/;"	s	file:
sortableTdbItem	hg/inc/hui.h	/^} sortableTdbItem;$/;"	t	typeref:struct:_sortableTdbItem
sortableTdbItemCreate	hg/lib/hui.c	/^sortableTdbItem *sortableTdbItemCreate(struct trackDb *tdbChild,sortOrder_t *sortOrder)$/;"	f
sortableTdbItemsCmp	hg/lib/hui.c	/^static int sortableTdbItemsCmp(const void *va, const void *vb)$/;"	f	file:
sortableTdbItemsFree	hg/lib/hui.c	/^void sortableTdbItemsFree(sortableTdbItem **items)$/;"	f
source	hg/inc/allpredictions.h	/^    char *source;	\/* Gene Prediction Source *\/$/;"	m	struct:allpredictions
source	hg/inc/bed12Source.h	/^    char *source;	\/* Source of this item *\/$/;"	m	struct:bed12Source
source	hg/inc/bgiGeneInfo.h	/^    char *source;	\/* Source of gene annotation *\/$/;"	m	struct:bgiGeneInfo
source	hg/inc/cdsEvidence.h	/^    char *source;	\/* Source of evidence *\/$/;"	m	struct:cdsEvidence
source	hg/inc/cdsPick.h	/^    char *source;	\/* Source of best evidence *\/$/;"	m	struct:cdsPick
source	hg/inc/chicken13kInfo.h	/^    char *source;	\/* Source of the probe *\/$/;"	m	struct:chicken13kInfo
source	hg/inc/rhMapInfo.h	/^    char *source;	\/* Source of marker *\/$/;"	m	struct:rhMapInfo
source	hg/inc/rhMapZfishInfo.h	/^    char *source;	\/* Source of marker *\/$/;"	m	struct:rhMapZfishInfo
source	hg/inc/rnaGene.h	/^    char *source;	\/* Source as in Sean Eddy's files. *\/$/;"	m	struct:rnaGene
source	hg/inc/snp.h	/^    char *source;	\/* Source of the data - dbSnp, Affymetrix, ... *\/$/;"	m	struct:snp
source	hg/inc/snpMap.h	/^    char *source;	\/* BAC_OVERLAP | MIXED | RANDOM | OTHER | Affy10K | Affy120K *\/$/;"	m	struct:snpMap
source	hg/inc/trackVersion.h	/^    char *source;	\/* perhaps a URL for the data source *\/$/;"	m	struct:trackVersion
source	inc/gff.h	/^    char *source;      \/* Name of source program. Not allocated here. *\/$/;"	m	struct:gffGroup
source	inc/gff.h	/^    char *source;   \/* Program that made this line.  Not allocated here. *\/$/;"	m	struct:gffLine
source	inc/gff3.h	/^    char *source;  \/* The source is a free text qualifier intended to describe$/;"	m	struct:gff3Ann
source	inc/peakCluster.h	/^    struct peakSource *source;   \/* Source track\/file for item. *\/$/;"	m	struct:peakItem	typeref:struct:peakItem::peakSource
source	lib/oldGff.c	/^    char source[64];	\/* Who put this segment here... *\/$/;"	m	struct:gffSegLine	file:
sourceAcc	hg/inc/txInfo.h	/^    char *sourceAcc;	\/* Accession of genbank transcript patterned on (may be refSeq) *\/$/;"	m	struct:txInfo
sourceAnnot	hg/inc/chicken13kInfo.h	/^    char *sourceAnnot;	\/* Source assigned annotation *\/$/;"	m	struct:chicken13kInfo
sourceCount	hg/inc/txGraph.h	/^    int sourceCount;	\/* Number of sources of evidence. *\/$/;"	m	struct:txGraph
sourceCount	inc/genoFind.h	/^    int sourceCount;			 \/* Count of source files. *\/$/;"	m	struct:genoFind
sourceHash	inc/gff.h	/^    struct hash *sourceHash;	\/* A name only hash of gff sources. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::hash
sourceId	hg/inc/txGraph.h	/^    int sourceId;	\/* Id (index) in sources list *\/$/;"	m	struct:txEvidence
sourceList	inc/gff.h	/^    struct gffSource *sourceList; \/* List of all sources in file. *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::gffSource
sourceName	hg/inc/dbDb.h	/^    char *sourceName;	\/* Source build\/release\/version of the assembly *\/$/;"	m	struct:dbDb
sourceOntologies	inc/gff3.h	/^    struct slName *sourceOntologies;     \/* source ontology URIs *\/$/;"	m	struct:gff3File	typeref:struct:gff3File::slName
sourceSize	hg/inc/txInfo.h	/^    int sourceSize;	\/* Number of bases in source, excluding poly-A tail. *\/$/;"	m	struct:txInfo
sourceType	hg/inc/ggMrnaAli.h	/^    char *sourceType;	\/* Not allocated here.  Typically "refSeq", "mrna" etc. *\/$/;"	m	struct:ggMrnaAli
sources	hg/inc/txGraph.h	/^    struct txSource *sources;	\/* Sources of evidence. *\/$/;"	m	struct:txGraph	typeref:struct:txGraph::txSource
sources	inc/genoFind.h	/^    struct gfSeqSource *sources;         \/* List of sequence sources. *\/$/;"	m	struct:genoFind	typeref:struct:genoFind::gfSeqSource
spAaSize	hg/lib/spDb.c	/^int spAaSize(struct sqlConnection *conn, char *acc)$/;"	f
spAccFromEmbl	hg/lib/spDb.c	/^char *spAccFromEmbl(struct sqlConnection *conn, char *acc)$/;"	f
spAccToId	hg/lib/spDb.c	/^char *spAccToId(struct sqlConnection *conn, char *acc)$/;"	f
spAnnDate	hg/lib/spDb.c	/^char *spAnnDate(struct sqlConnection *conn, char *acc)$/;"	f
spAnyAccToId	hg/lib/spDb.c	/^char *spAnyAccToId(struct sqlConnection *conn, char *acc)$/;"	f
spBinomialNames	hg/lib/spDb.c	/^struct slName *spBinomialNames(struct sqlConnection *conn, char *acc)$/;"	f
spBinomialToTaxon	hg/lib/spDb.c	/^int spBinomialToTaxon(struct sqlConnection *conn, char *name)$/;"	f
spCitation	hg/inc/spDb.h	/^struct spCitation$/;"	s
spCitations	hg/lib/spDb.c	/^struct spCitation *spCitations(struct sqlConnection *conn, char *acc)$/;"	f
spCommentType	hg/lib/spDb.c	/^char *spCommentType(struct sqlConnection *conn, int typeId)$/;"	f
spCommentVal	hg/lib/spDb.c	/^char *spCommentVal(struct sqlConnection *conn, int valId)$/;"	f
spCommonToTaxon	hg/lib/spDb.c	/^int spCommonToTaxon(struct sqlConnection *conn, char *commonName)$/;"	f
spCreateDate	hg/lib/spDb.c	/^char *spCreateDate(struct sqlConnection *conn, char *acc)$/;"	f
spDescription	hg/lib/spDb.c	/^char *spDescription(struct sqlConnection *conn, char *acc)$/;"	f
spDisplayID	hg/inc/kgXref.h	/^    char *spDisplayID;	\/* UniProt display ID *\/$/;"	m	struct:kgXref
spDisplayId	hg/inc/ensXRefZfish.h	/^    char *spDisplayId;	\/* UniProt Display ID *\/$/;"	m	struct:ensXRefZfish
spEmblAccs	hg/lib/spDb.c	/^struct slName *spEmblAccs(struct sqlConnection *conn, char *acc)$/;"	f
spExtDbAcc1List	hg/lib/spDb.c	/^struct slName *spExtDbAcc1List(struct sqlConnection *conn, char *acc,$/;"	f
spFeature	hg/inc/spDb.h	/^struct spFeature$/;"	s
spFeatureClassId	hg/lib/spDb.c	/^int spFeatureClassId(struct sqlConnection *conn, char *name)$/;"	f
spFeatureClassName	hg/lib/spDb.c	/^char *spFeatureClassName(struct sqlConnection *conn, int featureClass)$/;"	f
spFeatureEndFuzzy	hg/inc/spDb.h	40;"	d
spFeatureEndGreater	hg/inc/spDb.h	39;"	d
spFeatureStartFuzzy	hg/inc/spDb.h	38;"	d
spFeatureStartLess	hg/inc/spDb.h	37;"	d
spFeatureTypeId	hg/lib/spDb.c	/^int spFeatureTypeId(struct sqlConnection *conn, char *name)$/;"	f
spFeatureTypeName	hg/lib/spDb.c	/^char *spFeatureTypeName(struct sqlConnection *conn, int featureType)$/;"	f
spFeatures	hg/lib/spDb.c	/^struct spFeature *spFeatures(struct sqlConnection *conn, char *acc,$/;"	f
spFindAcc	hg/lib/spDb.c	/^char *spFindAcc(struct sqlConnection *conn, char *id)$/;"	f
spGeneName	hg/inc/bdgpSwissProt.h	/^    char *spGeneName;	\/* (long) gene name from SwissProt *\/$/;"	m	struct:bdgpSwissProt
spGeneName	hg/inc/flyBaseSwissProt.h	/^    char *spGeneName;	\/* (long) gene name from SwissProt *\/$/;"	m	struct:flyBaseSwissProt
spGeneToAccs	hg/lib/spDb.c	/^struct slName *spGeneToAccs(struct sqlConnection *conn, $/;"	f
spGenes	hg/lib/spDb.c	/^struct slName *spGenes(struct sqlConnection *conn, char *acc)$/;"	f
spID	hg/inc/dv.h	/^    char *spID;	\/* Swiss-prot ID *\/$/;"	m	struct:dv
spID	hg/inc/kgXref.h	/^    char *spID;	\/* UniProt protein Accession number *\/$/;"	m	struct:kgXref
spIdToAcc	hg/lib/spDb.c	/^char *spIdToAcc(struct sqlConnection *conn, char *id)$/;"	f
spIsCurated	hg/lib/spDb.c	/^boolean spIsCurated(struct sqlConnection *conn, char *acc)$/;"	f
spIsPrimaryAcc	hg/lib/spDb.c	/^boolean spIsPrimaryAcc(struct sqlConnection *conn, char *acc)$/;"	f
spKeywordSearch	hg/lib/spDb.c	/^struct slName *spKeywordSearch(struct sqlConnection *conn, char *keyword,$/;"	f
spKeywords	hg/lib/spDb.c	/^struct slName *spKeywords(struct sqlConnection *conn, char *acc)$/;"	f
spLookupPrimaryAcc	hg/lib/spDb.c	/^char *spLookupPrimaryAcc(struct sqlConnection *conn, $/;"	f
spMolWeight	hg/lib/spDb.c	/^int spMolWeight(struct sqlConnection *conn, char *acc)$/;"	f
spOrganelle	hg/lib/spDb.c	/^char *spOrganelle(struct sqlConnection *conn, char *acc)$/;"	f
spPdbAccs	hg/lib/spDb.c	/^struct slName *spPdbAccs(struct sqlConnection *conn, char *acc)$/;"	f
spProteinEvidence	hg/lib/spDb.c	/^struct slName *spProteinEvidence(struct sqlConnection *conn, char *acc)$/;"	f
spRefAuthors	hg/lib/spDb.c	/^struct slName *spRefAuthors(struct sqlConnection *conn, int refId)$/;"	f
spRefCite	hg/lib/spDb.c	/^char *spRefCite(struct sqlConnection *conn, int refId)$/;"	f
spRefPubMed	hg/lib/spDb.c	/^char *spRefPubMed(struct sqlConnection *conn, int refId)$/;"	f
spRefTitle	hg/lib/spDb.c	/^char *spRefTitle(struct sqlConnection *conn, int refId)$/;"	f
spRefToAccs	hg/lib/spDb.c	/^struct slName *spRefToAccs(struct sqlConnection *conn, int refId)$/;"	f
spSeqDate	hg/lib/spDb.c	/^char *spSeqDate(struct sqlConnection *conn, char *acc)$/;"	f
spSymbol	hg/inc/bdgpSwissProt.h	/^    char *spSymbol;	\/* symbolic-looking gene id from SwissProt *\/$/;"	m	struct:bdgpSwissProt
spSymbol	hg/inc/flyBaseSwissProt.h	/^    char *spSymbol;	\/* symbolic-looking gene id from SwissProt *\/$/;"	m	struct:flyBaseSwissProt
spTaxon	hg/lib/spDb.c	/^int spTaxon(struct sqlConnection *conn, char *acc)$/;"	f
spTaxonToBinomial	hg/lib/spDb.c	/^char *spTaxonToBinomial(struct sqlConnection *conn, int taxon)$/;"	f
spTaxonToCommon	hg/lib/spDb.c	/^char *spTaxonToCommon(struct sqlConnection *conn, int taxon)$/;"	f
spTaxons	hg/lib/spDb.c	/^struct slName *spTaxons(struct sqlConnection *conn, char *acc)$/;"	f
spaceBefore	inc/kxTok.h	/^    bool spaceBefore;	\/* True if there is a space before *\/$/;"	m	struct:kxTok
spaceDelimitedTableSize	hg/lib/chromGraphFactory.c	/^static int spaceDelimitedTableSize(struct slName *list)$/;"	f	file:
spaceNode	inc/spaceSaver.h	/^struct spaceNode$/;"	s
spaceOut	lib/common.c	/^void spaceOut(FILE *f, int count)$/;"	f
spaceRowTracker	inc/spaceSaver.h	/^struct spaceRowTracker $/;"	s
spaceSaver	inc/spaceSaver.h	/^struct spaceSaver$/;"	s
spaceSaverAdd	lib/spaceSaver.c	/^struct spaceNode *spaceSaverAdd(struct spaceSaver *ss, $/;"	f
spaceSaverAddOverflow	lib/spaceSaver.c	/^struct spaceNode *spaceSaverAddOverflow(struct spaceSaver *ss, int start, int end, $/;"	f
spaceSaverFinish	lib/spaceSaver.c	/^void spaceSaverFinish(struct spaceSaver *ss)$/;"	f
spaceSaverFree	lib/spaceSaver.c	/^void spaceSaverFree(struct spaceSaver **pSs)$/;"	f
spaceSaverMaxCellsNew	lib/spaceSaver.c	/^struct spaceSaver *spaceSaverMaxCellsNew(int winStart, int winEnd, int maxRows, int maxCells)$/;"	f
spaceSaverNew	lib/spaceSaver.c	/^struct spaceSaver *spaceSaverNew(int winStart, int winEnd, int maxRows)$/;"	f
spaceToUnderbar	lib/obscure.c	/^void spaceToUnderbar(char *s)$/;"	f
spaceWidth	hg/inc/genoLay.h	/^    int spaceWidth;			\/* Width of a space. *\/$/;"	m	struct:genoLay
spacedColumn	inc/spacedColumn.h	/^struct spacedColumn$/;"	s
spacedColumnBiggestSize	lib/spacedColumn.c	/^int spacedColumnBiggestSize(struct spacedColumn *colList)$/;"	f
spacedColumnFatten	lib/hmmPfamParse.c	/^void spacedColumnFatten(struct spacedColumn *colList)$/;"	f
spacedColumnFreeList	inc/spacedColumn.h	15;"	d
spacedColumnFromFile	lib/spacedColumn.c	/^struct spacedColumn *spacedColumnFromFile(char *fileName)$/;"	f
spacedColumnFromLineFile	lib/spacedColumn.c	/^struct spacedColumn *spacedColumnFromLineFile(struct lineFile *lf)$/;"	f
spacedColumnFromSample	lib/spacedColumn.c	/^struct spacedColumn *spacedColumnFromSample(char *sample)$/;"	f
spacedColumnFromSizeCommaList	lib/spacedColumn.c	/^struct spacedColumn *spacedColumnFromSizeCommaList(char *commaList)$/;"	f
spacedColumnFromWidthArray	lib/spacedColumn.c	/^struct spacedColumn *spacedColumnFromWidthArray(int array[], int size)$/;"	f
spacedColumnParseLine	lib/spacedColumn.c	/^boolean spacedColumnParseLine(struct spacedColumn *colList, $/;"	f
spacedSeedMaxWeight	lib/spacedSeed.c	/^int spacedSeedMaxWeight()$/;"	f
spacedSeedOffsets	lib/spacedSeed.c	/^int *spacedSeedOffsets(int weight)$/;"	f
spacedSeedSpan	lib/spacedSeed.c	/^int spacedSeedSpan(int weight)$/;"	f
spacedSeeds	lib/spacedSeed.c	/^char *spacedSeeds[] = {$/;"	v
span	hg/inc/rnaPLFold.h	/^    unsigned span;	\/* Number of positions covered by colorIndex values *\/$/;"	m	struct:rnaPLFold
span	hg/inc/wiggle.h	/^    unsigned span;		\/*	span for this set of data	*\/$/;"	m	struct:wigAsciiData
span	hg/inc/wiggle.h	/^    unsigned span;	\/* each value spans this many bases *\/$/;"	m	struct:wiggle
span	hg/inc/wiggle.h	/^    unsigned span;	\/* each value spans this many bases *\/$/;"	m	struct:wiggleData
span	hg/inc/wiggle.h	/^    unsigned span;	\/* each value spans this many bases *\/$/;"	m	struct:wiggleStats
span	hg/lib/wiggleUtils.c	/^    unsigned span;	\/* span of this data *\/$/;"	m	struct:wigStatsAcc	file:
spanField	hg/inc/hdb.h	/^    char spanField[HDB_MAX_FIELD_STRING];		\/* Name of span field. (wiggle) *\/$/;"	m	struct:hTableInfo
spanInUse	hg/lib/wiggleUtils.c	/^int spanInUse(struct sqlConnection *conn, char *table, char *chrom,$/;"	f
spanLimit	hg/inc/wiggle.h	/^    unsigned spanLimit;		\/*	for span==spanLimit on file reads *\/$/;"	m	struct:wiggleDataStream
sparseDataName	lib/udc.c	/^static char *sparseDataName = "sparseData";$/;"	v	file:
sparseFileName	lib/udc.c	/^    char *sparseFileName;	\/* Name of sparse data file. *\/$/;"	m	struct:udcFile	file:
sparseRAOffset	lib/udc.c	/^    bits64 sparseRAOffset;      \/* Read-ahead buffer offset *\/$/;"	m	struct:udcFile	file:
sparseReadAhead	lib/udc.c	/^    boolean sparseReadAhead;    \/* Read-ahead has something in the buffer *\/$/;"	m	struct:udcFile	file:
sparseReadAheadBuf	lib/udc.c	/^    char *sparseReadAheadBuf;   \/* Read-ahead buffer, if any *\/$/;"	m	struct:udcFile	file:
spec	inc/annoFormatter.h	/^    struct optionSpec spec;$/;"	m	struct:annoFormatterOption	typeref:struct:annoFormatterOption::optionSpec
species	hg/inc/atomDb.h	/^    char *species;	\/* species name *\/$/;"	m	struct:atom
species	hg/inc/axtInfo.h	/^    char species[26];	\/* long name of species *\/$/;"	m	struct:axtInfo
species	hg/inc/cdsOrtho.h	/^    char *species;	\/* Other species (or species database) *\/$/;"	m	struct:cdsOrtho
species	hg/inc/codeBlastScore.h	/^    char species[256];	\/* Code *\/$/;"	m	struct:codeBlastScore
species	hg/inc/sargassoSeaXra.h	/^    char species[256];	\/* Code *\/$/;"	m	struct:sargassoSeaXra
species	hg/inc/tfbsCons.h	/^    char species[7];	\/* common name, scientific name *\/$/;"	m	struct:tfbsCons
species	hg/inc/tfbsConsFactors.h	/^    char species[7];	\/* Common name *\/$/;"	m	struct:tfbsConsFactors
species	inc/gff3.h	/^    struct slName *species;              \/* Species, usually NCBI Taxonomy$/;"	m	struct:gff3File	typeref:struct:gff3File::slName
speciesInfo	hg/lib/mafGene.c	/^struct speciesInfo$/;"	s	file:
spectrumId	hg/inc/peptideMapping.h	/^    char *spectrumId;	\/* Non-unique identifier for the spectrum file *\/$/;"	m	struct:peptideMapping
speed	lib/portimpl.h	/^    double (*speed)();$/;"	m	struct:webServerSpecific
splatAli	inc/splatAli.h	/^struct splatAli$/;"	s
splatAliCmpReadName	lib/splatAli.c	/^int splatAliCmpReadName(const void *va, const void *vb)$/;"	f
splatAliCommaIn	lib/splatAli.c	/^struct splatAli *splatAliCommaIn(char **pS, struct splatAli *ret)$/;"	f
splatAliCommaOut	inc/splatAli.h	63;"	d
splatAliFree	lib/splatAli.c	/^void splatAliFree(struct splatAli **pEl)$/;"	f
splatAliFreeList	lib/splatAli.c	/^void splatAliFreeList(struct splatAli **pList)$/;"	f
splatAliLoad	lib/splatAli.c	/^struct splatAli *splatAliLoad(char **row)$/;"	f
splatAliLoadAll	lib/splatAli.c	/^struct splatAli *splatAliLoadAll(char *fileName) $/;"	f
splatAliLoadAllByChar	lib/splatAli.c	/^struct splatAli *splatAliLoadAllByChar(char *fileName, char chopper) $/;"	f
splatAliLoadAllByTab	inc/splatAli.h	41;"	d
splatAliLookForBest	lib/splatAli.c	/^void splatAliLookForBest(struct splatAli *start, struct splatAli *end, $/;"	f
splatAliOutput	lib/splatAli.c	/^void splatAliOutput(struct splatAli *el, FILE *f, char sep, char lastSep) $/;"	f
splatAliScore	lib/splatAli.c	/^int splatAliScore(char *ali)$/;"	f
splatAliStaticLoad	lib/splatAli.c	/^void splatAliStaticLoad(char **row, struct splatAli *ret)$/;"	f
splatAliTabOut	inc/splatAli.h	60;"	d
spliceEdge	hg/inc/altGraphX.h	/^struct spliceEdge $/;"	s
spliceEdgeTypeConfCmp	hg/lib/altGraphX.c	/^int spliceEdgeTypeConfCmp(const void *va, const void *vb)$/;"	f
spliceSyn	hg/lib/snp125Ui.c	/^static char *spliceSyn[] =$/;"	v	file:
splice_acceptor_variant	hg/inc/soterm.h	/^    splice_acceptor_variant=1574,$/;"	e	enum:__anon11
splice_donor_variant	hg/inc/soterm.h	/^    splice_donor_variant=1575,$/;"	e	enum:__anon11
splice_region_variant	hg/inc/soterm.h	/^    splice_region_variant=1630,$/;"	e	enum:__anon11
splignAlign	hg/inc/splignAlign.h	/^struct splignAlign$/;"	s
splignAlignCommaIn	hg/lib/splignAlign.c	/^struct splignAlign *splignAlignCommaIn(char **pS, struct splignAlign *ret)$/;"	f
splignAlignCommaOut	hg/inc/splignAlign.h	64;"	d
splignAlignFree	hg/lib/splignAlign.c	/^void splignAlignFree(struct splignAlign **pEl)$/;"	f
splignAlignFreeList	hg/lib/splignAlign.c	/^void splignAlignFreeList(struct splignAlign **pList)$/;"	f
splignAlignLoad	hg/lib/splignAlign.c	/^struct splignAlign *splignAlignLoad(char **row)$/;"	f
splignAlignLoadAll	hg/lib/splignAlign.c	/^struct splignAlign *splignAlignLoadAll(char *fileName) $/;"	f
splignAlignLoadAllByChar	hg/lib/splignAlign.c	/^struct splignAlign *splignAlignLoadAllByChar(char *fileName, char chopper) $/;"	f
splignAlignLoadAllByTab	hg/inc/splignAlign.h	42;"	d
splignAlignOutput	hg/lib/splignAlign.c	/^void splignAlignOutput(struct splignAlign *el, FILE *f, char sep, char lastSep) $/;"	f
splignAlignStaticLoad	hg/lib/splignAlign.c	/^void splignAlignStaticLoad(char **row, struct splignAlign *ret)$/;"	f
splignAlignTabOut	hg/inc/splignAlign.h	61;"	d
splitDbTable	hg/lib/baseMaskCommon.c	/^void splitDbTable(char *chromDb, char *track, char **pDb, char **pTable)$/;"	f
splitList	lib/chainBlock.c	/^static int splitList(struct dlList *oldList, struct dlList *newList)$/;"	f	file:
splitOffNonNumeric	lib/common.c	/^char *splitOffNonNumeric(char *s)$/;"	f
splitOffNumber	lib/common.c	/^char *splitOffNumber(char *db)$/;"	f
splitPath	lib/filePath.c	/^void splitPath(char *path, char dir[PATH_LEN], char name[FILENAME_LEN],$/;"	f
splitPrefix	hg/inc/joiner.h	/^    char *splitPrefix;		\/* Prefix for splitting tables. *\/$/;"	m	struct:joinerField
splitSuffix	hg/inc/joiner.h	/^    char *splitSuffix;		\/* Suffix for splitting tables. *\/$/;"	m	struct:joinerField
splix	inc/splix.h	/^struct splix $/;"	s
splixFileHeader	inc/splix.h	/^struct splixFileHeader$/;"	s
splixFree	jkOwnLib/splix.c	/^void splixFree(struct splix **pSplix)$/;"	f
splixMinQuerySize	inc/splix.h	62;"	d
splixOffsetToChromIx	jkOwnLib/splix.c	/^int splixOffsetToChromIx(struct splix *splix, bits32 tOffset)$/;"	f
splixRead	jkOwnLib/splix.c	/^struct splix *splixRead(char *fileName, boolean memoryMap)$/;"	f
splixSlotCount	inc/splix.h	61;"	d
spot	hg/inc/cgh.h	/^    unsigned spot;	\/* Spot number on array *\/$/;"	m	struct:cgh
spot	hg/inc/stanMad.h	/^    int spot;	\/* The spot number on the array. *\/$/;"	m	struct:stanMad
sprintLongWithCommas	lib/obscure.c	/^void sprintLongWithCommas(char *s, long long l)$/;"	f
sprintWithGreekByte	lib/obscure.c	/^void sprintWithGreekByte(char *s, int slength, long long size)$/;"	f
sqlAbort	hg/lib/jksql.c	/^void sqlAbort(struct sqlConnection  *sc, char *format, ...)$/;"	f
sqlAddDatabaseFields	hg/lib/jksql.c	/^void sqlAddDatabaseFields(char *database, struct hash *hash)$/;"	f
sqlAllFields	hg/lib/jksql.c	/^struct hash *sqlAllFields(void)$/;"	f
sqlByteArray	lib/sqlList.c	/^int sqlByteArray(char *s, signed char *array, int arraySize)$/;"	f
sqlByteArrayToString	lib/sqlList.c	/^char *sqlByteArrayToString( signed char *array, int arraySize)$/;"	f
sqlByteDynamicArray	lib/sqlList.c	/^void sqlByteDynamicArray(char *s, signed char **retArray, int *retSize)$/;"	f
sqlByteStaticArray	lib/sqlList.c	/^void sqlByteStaticArray(char *s, signed char **retArray, int *retSize)$/;"	f
sqlCharArray	lib/sqlList.c	/^int sqlCharArray(char *s, char *array, int arraySize)$/;"	f
sqlCharArrayToString	lib/sqlList.c	/^char *sqlCharArrayToString( char *array, int arraySize)$/;"	f
sqlCharComma	lib/sqlList.c	/^char sqlCharComma(char **pS)$/;"	f
sqlCharDynamicArray	lib/sqlList.c	/^void sqlCharDynamicArray(char *s, char **retArray, int *retSize)$/;"	f
sqlCharStaticArray	lib/sqlList.c	/^void sqlCharStaticArray(char *s, char **retArray, int *retSize)$/;"	f
sqlCleanupAll	hg/lib/jksql.c	/^void sqlCleanupAll(void)$/;"	f
sqlConnCache	hg/lib/jksql.c	/^struct sqlConnCache$/;"	s	file:
sqlConnCacheAdd	hg/lib/jksql.c	/^static struct sqlConnCacheEntry *sqlConnCacheAdd(struct sqlConnCache *cache,$/;"	f	file:
sqlConnCacheAddNew	hg/lib/jksql.c	/^static struct sqlConnCacheEntry *sqlConnCacheAddNew(struct sqlConnCache *cache,$/;"	f	file:
sqlConnCacheAlloc	hg/lib/jksql.c	/^struct sqlConnection *sqlConnCacheAlloc(struct sqlConnCache *cache,$/;"	f
sqlConnCacheDealloc	hg/lib/jksql.c	/^void sqlConnCacheDealloc(struct sqlConnCache *cache, struct sqlConnection **pConn)$/;"	f
sqlConnCacheDoAlloc	hg/lib/jksql.c	/^static struct sqlConnection *sqlConnCacheDoAlloc(struct sqlConnCache *cache,$/;"	f	file:
sqlConnCacheEntry	hg/lib/jksql.c	/^struct sqlConnCacheEntry$/;"	s	file:
sqlConnCacheEntryDbMatch	hg/lib/jksql.c	/^static boolean sqlConnCacheEntryDbMatch(struct sqlConnCacheEntry *scce,$/;"	f	file:
sqlConnCacheEntrySetDb	hg/lib/jksql.c	/^static boolean sqlConnCacheEntrySetDb(struct sqlConnCacheEntry *scce,$/;"	f	file:
sqlConnCacheFindFree	hg/lib/jksql.c	/^static struct sqlConnCacheEntry *sqlConnCacheFindFree(struct sqlConnCache *cache,$/;"	f	file:
sqlConnCacheFree	hg/lib/jksql.c	/^void sqlConnCacheFree(struct sqlConnCache **pCache)$/;"	f
sqlConnCacheMax	hg/lib/jksql.c	/^enum {sqlConnCacheMax = 16};$/;"	e	enum:__anon4	file:
sqlConnCacheMayAlloc	hg/lib/jksql.c	/^struct sqlConnection *sqlConnCacheMayAlloc(struct sqlConnCache *cache,$/;"	f
sqlConnCacheNew	hg/lib/jksql.c	/^struct sqlConnCache *sqlConnCacheNew()$/;"	f
sqlConnCacheNewProfile	hg/lib/jksql.c	/^struct sqlConnCache *sqlConnCacheNewProfile(char *profileName)$/;"	f
sqlConnCacheNewRemote	hg/lib/jksql.c	/^struct sqlConnCache *sqlConnCacheNewRemote(char *host, char *user,$/;"	f
sqlConnCacheProfileAlloc	hg/lib/jksql.c	/^struct sqlConnection *sqlConnCacheProfileAlloc(struct sqlConnCache *cache,$/;"	f
sqlConnCacheProfileAllocMaybe	hg/lib/jksql.c	/^struct sqlConnection *sqlConnCacheProfileAllocMaybe(struct sqlConnCache *cache,$/;"	f
sqlConnProfile	hg/lib/jksql.c	/^static struct sqlConnection *sqlConnProfile(struct sqlProfile* sp, char *database, boolean abort)$/;"	f	file:
sqlConnRemote	hg/lib/jksql.c	/^static struct sqlConnection *sqlConnRemote(char *host, unsigned int port, char *socket,$/;"	f	file:
sqlConnect	hg/lib/jksql.c	/^struct sqlConnection *sqlConnect(char *database)$/;"	f
sqlConnectProfile	hg/lib/jksql.c	/^struct sqlConnection *sqlConnectProfile(char *profileName, char *database)$/;"	f
sqlConnectRemote	hg/lib/jksql.c	/^struct sqlConnection *sqlConnectRemote(char *host, char *user, char *password,$/;"	f
sqlConnection	hg/lib/jksql.c	/^struct sqlConnection$/;"	s	file:
sqlConstraint	hg/inc/wiggle.h	/^    char *sqlConstraint;	\/*	extra SQL constraints	*\/$/;"	m	struct:wiggleDataStream
sqlCopyTable	hg/lib/jksql.c	/^void sqlCopyTable(struct sqlConnection *sc, char *table1, char *table2)$/;"	f
sqlCountColumns	hg/lib/jksql.c	/^int sqlCountColumns(struct sqlResult *sr)$/;"	f
sqlCountColumnsInTable	hg/lib/jksql.c	/^int sqlCountColumnsInTable(struct sqlConnection *sc, char *table)$/;"	f
sqlDatabaseExists	hg/lib/jksql.c	/^boolean sqlDatabaseExists(char *database)$/;"	f
sqlDateToUnixTime	hg/lib/jksql.c	/^int sqlDateToUnixTime(char *sqlDate)$/;"	f
sqlDisconnect	hg/lib/jksql.c	/^void sqlDisconnect(struct sqlConnection **pSc)$/;"	f
sqlDouble	lib/sqlNum.c	/^double sqlDouble(char *s)$/;"	f
sqlDoubleArray	lib/sqlList.c	/^int sqlDoubleArray(char *s, double *array, int maxArraySize)$/;"	f
sqlDoubleArrayToString	lib/sqlList.c	/^char *sqlDoubleArrayToString( double *array, int arraySize)$/;"	f
sqlDoubleComma	lib/sqlList.c	/^double sqlDoubleComma(char **pS)$/;"	f
sqlDoubleDynamicArray	lib/sqlList.c	/^void sqlDoubleDynamicArray(char *s, double **retArray, int *retSize)$/;"	f
sqlDoubleInList	lib/sqlNum.c	/^double sqlDoubleInList(char **pS)$/;"	f
sqlDoubleStaticArray	lib/sqlList.c	/^void sqlDoubleStaticArray(char *s, double **retArray, int *retSize)$/;"	f
sqlDropTable	hg/lib/jksql.c	/^void sqlDropTable(struct sqlConnection *sc, char *table)$/;"	f
sqlDump	hg/lib/jksql.c	/^void sqlDump(FILE *fh)$/;"	f
sqlDumpConnection	hg/lib/jksql.c	/^static void sqlDumpConnection(struct sqlConnection *conn, FILE *fh)$/;"	f	file:
sqlDumpProfile	hg/lib/jksql.c	/^static void sqlDumpProfile(struct sqlProfile *sp, FILE *fh)$/;"	f	file:
sqlEatChar	lib/sqlList.c	/^char *sqlEatChar(char *s, char c)$/;"	f
sqlEnumComma	lib/sqlList.c	/^unsigned sqlEnumComma(char **pS, char **values, struct hash **valHashPtr)$/;"	f
sqlEnumParse	lib/sqlList.c	/^unsigned sqlEnumParse(char *valStr, char **values, struct hash **valHashPtr)$/;"	f
sqlEnumPrint	lib/sqlList.c	/^void sqlEnumPrint(FILE *f, unsigned value, char **values)$/;"	f
sqlEscapeString	hg/lib/jksql.c	/^char *sqlEscapeString(const char* from)$/;"	f
sqlEscapeString2	hg/lib/jksql.c	/^char *sqlEscapeString2(char *to, const char* from)$/;"	f
sqlEscapeTabFileString	hg/lib/jksql.c	/^char *sqlEscapeTabFileString(const char *from)$/;"	f
sqlEscapeTabFileString2	hg/lib/jksql.c	/^char *sqlEscapeTabFileString2(char *to, const char *from)$/;"	f
sqlExecProg	hg/lib/sqlProg.c	/^void sqlExecProg(char *prog, char **progArgs, int userArgc, char *userArgv[])$/;"	f
sqlExecProgLocal	hg/lib/sqlProg.c	/^void sqlExecProgLocal(char *prog, char **progArgs, int userArgc, char *userArgv[])$/;"	f
sqlExecProgProfile	hg/lib/sqlProg.c	/^void sqlExecProgProfile(char *profile, char *prog, char **progArgs, int userArgc, char *userArgv[])$/;"	f
sqlExists	hg/lib/jksql.c	/^boolean sqlExists(struct sqlConnection *conn, char *query)$/;"	f
sqlFieldColumn	hg/lib/jksql.c	/^int sqlFieldColumn(struct sqlResult *sr, char *colName)$/;"	f
sqlFieldCount	hg/lib/jksql.c	/^int sqlFieldCount(struct sqlResult *sr)$/;"	f
sqlFieldIndex	hg/lib/jksql.c	/^int sqlFieldIndex(struct sqlConnection *conn, char *table, char *field)$/;"	f
sqlFieldInfo	hg/inc/jksql.h	/^struct sqlFieldInfo$/;"	s
sqlFieldInfoFree	hg/lib/jksql.c	/^static void sqlFieldInfoFree(struct sqlFieldInfo **fiPtr)$/;"	f	file:
sqlFieldInfoFreeList	hg/lib/jksql.c	/^void sqlFieldInfoFreeList(struct sqlFieldInfo **fiListPtr)$/;"	f
sqlFieldInfoGet	hg/lib/jksql.c	/^struct sqlFieldInfo *sqlFieldInfoGet(struct sqlConnection *conn, char *table)$/;"	f
sqlFieldInfoParse	hg/lib/jksql.c	/^static struct sqlFieldInfo *sqlFieldInfoParse(char **row)$/;"	f	file:
sqlFieldName	hg/lib/jksql.c	/^char* sqlFieldName(struct sqlResult *sr)$/;"	f
sqlFieldNames	hg/lib/jksql.c	/^struct slName *sqlFieldNames(struct sqlConnection *conn, char *table)$/;"	f
sqlFixedStringComma	lib/sqlList.c	/^void sqlFixedStringComma(char **pS, char *buf, int bufSize)$/;"	f
sqlFloat	lib/sqlNum.c	/^float sqlFloat(char *s)$/;"	f
sqlFloatArray	lib/sqlList.c	/^int sqlFloatArray(char *s, float *array, int maxArraySize)$/;"	f
sqlFloatArrayToString	lib/sqlList.c	/^char *sqlFloatArrayToString( float *array, int arraySize)$/;"	f
sqlFloatComma	lib/sqlList.c	/^float sqlFloatComma(char **pS)$/;"	f
sqlFloatDynamicArray	lib/sqlList.c	/^void sqlFloatDynamicArray(char *s, float **retArray, int *retSize)$/;"	f
sqlFloatInList	lib/sqlNum.c	/^float sqlFloatInList(char **pS)$/;"	f
sqlFloatStaticArray	lib/sqlList.c	/^void sqlFloatStaticArray(char *s, float **retArray, int *retSize)$/;"	f
sqlFreeResult	hg/lib/jksql.c	/^void sqlFreeResult(struct sqlResult **pRes)$/;"	f
sqlGetAllDatabase	hg/lib/jksql.c	/^struct slName *sqlGetAllDatabase(struct sqlConnection *sc)$/;"	f
sqlGetDatabase	hg/lib/jksql.c	/^char* sqlGetDatabase(struct sqlConnection *sc)$/;"	f
sqlGetEnumDef	hg/lib/jksql.c	/^char** sqlGetEnumDef(struct sqlConnection *conn, char* table, char* colName)$/;"	f
sqlGetField	hg/lib/hdb.c	/^char *sqlGetField(char *db, char *tblName, char *fldName,$/;"	f
sqlGetHost	hg/lib/jksql.c	/^char* sqlGetHost(struct sqlConnection *sc)$/;"	f
sqlGetLock	hg/lib/jksql.c	/^void sqlGetLock(struct sqlConnection *sc, char *name)$/;"	f
sqlGetOptQuoteString	lib/sqlList.c	/^static char *sqlGetOptQuoteString(char **pS)$/;"	f	file:
sqlGetPrimaryKey	hg/lib/jksql.c	/^char *sqlGetPrimaryKey(struct sqlConnection *conn, char *table)$/;"	f
sqlGetResult	hg/lib/jksql.c	/^struct sqlResult *sqlGetResult(struct sqlConnection *sc, char *query)$/;"	f
sqlGetResultExt	hg/lib/jksql.c	/^struct sqlResult *sqlGetResultExt(struct sqlConnection *sc, char *query, unsigned int *errorNo, char **error)$/;"	f
sqlHardLockAll	hg/lib/jksql.c	/^void sqlHardLockAll(struct sqlConnection *sc, boolean isWrite)$/;"	f
sqlHardLockTable	hg/lib/jksql.c	/^void sqlHardLockTable(struct sqlConnection *sc, char *table, boolean isWrite)$/;"	f
sqlHardLockTables	hg/lib/jksql.c	/^void sqlHardLockTables(struct sqlConnection *sc, struct slName *tableList,$/;"	f
sqlHardUnlockAll	hg/lib/jksql.c	/^void sqlHardUnlockAll(struct sqlConnection *sc)$/;"	f
sqlHashOfDatabases	hg/lib/jksql.c	/^struct hash *sqlHashOfDatabases(void)$/;"	f
sqlInitTracking	hg/lib/jksql.c	/^static void sqlInitTracking(void)$/;"	f	file:
sqlIsRemote	hg/lib/jksql.c	/^boolean sqlIsRemote(struct sqlConnection *conn)$/;"	f
sqlLastAutoId	hg/lib/jksql.c	/^unsigned int sqlLastAutoId(struct sqlConnection *conn)$/;"	f
sqlLikeFromWild	hg/lib/jksql.c	/^char *sqlLikeFromWild(char *wild)$/;"	f
sqlListFields	hg/lib/jksql.c	/^struct slName *sqlListFields(struct sqlConnection *conn, char *table)$/;"	f
sqlListOfDatabases	hg/lib/jksql.c	/^struct slName *sqlListOfDatabases(void)$/;"	f
sqlListTables	hg/lib/jksql.c	/^struct slName *sqlListTables(struct sqlConnection *conn)$/;"	f
sqlLoadFunc	hg/inc/jksql.h	/^typedef struct slList *(*sqlLoadFunc)(char **row);$/;"	t	typeref:struct:sqlLoadFunc
sqlLoadTabFile	hg/lib/jksql.c	/^void sqlLoadTabFile(struct sqlConnection *conn, char *path, char *table,$/;"	f
sqlLongLong	lib/sqlNum.c	/^long long sqlLongLong(char *s)$/;"	f
sqlLongLongArray	lib/sqlList.c	/^int sqlLongLongArray(char *s, long long *array, int arraySize)$/;"	f
sqlLongLongArrayToString	lib/sqlList.c	/^char *sqlLongLongArrayToString( long long *array, int arraySize)$/;"	f
sqlLongLongComma	lib/sqlList.c	/^long long sqlLongLongComma(char **pS)$/;"	f
sqlLongLongDynamicArray	lib/sqlList.c	/^void sqlLongLongDynamicArray(char *s, long long **retArray, int *retSize)$/;"	f
sqlLongLongInList	lib/sqlNum.c	/^long long sqlLongLongInList(char **pS)$/;"	f
sqlLongLongStaticArray	lib/sqlList.c	/^void sqlLongLongStaticArray(char *s, long long **retArray, int *retSize)$/;"	f
sqlMajorVersion	hg/lib/jksql.c	/^int sqlMajorVersion(struct sqlConnection *conn)$/;"	f
sqlMatchLike	lib/wildcmp.c	/^boolean sqlMatchLike(char *wildCard, char *string)$/;"	f
sqlMayConnect	hg/lib/jksql.c	/^struct sqlConnection *sqlMayConnect(char *database)$/;"	f
sqlMayConnectProfile	hg/lib/jksql.c	/^struct sqlConnection *sqlMayConnectProfile(char *profileName, char *database)$/;"	f
sqlMayConnectRemote	hg/lib/jksql.c	/^struct sqlConnection *sqlMayConnectRemote(char *host, char *user, char *password,$/;"	f
sqlMaybeMakeTable	hg/lib/jksql.c	/^boolean sqlMaybeMakeTable(struct sqlConnection *sc, char *table, char *query)$/;"	f
sqlMaybeNextRow	hg/lib/jksql.c	/^static char **sqlMaybeNextRow(struct sqlResult *sr, boolean *retOk)$/;"	f	file:
sqlMinorVersion	hg/lib/jksql.c	/^int sqlMinorVersion(struct sqlConnection *conn)$/;"	f
sqlMonitorDisable	hg/lib/jksql.c	/^void sqlMonitorDisable(void)$/;"	f
sqlMonitorEnable	hg/lib/jksql.c	/^void sqlMonitorEnable(unsigned flags)$/;"	f
sqlMonitorSetIndent	hg/lib/jksql.c	/^void sqlMonitorSetIndent(unsigned indent)$/;"	f
sqlMustGetResult	hg/lib/jksql.c	/^struct sqlResult *sqlMustGetResult(struct sqlConnection *sc, char *query)$/;"	f
sqlName	inc/asParse.h	/^    char *sqlName;                 \/* SQL type name. *\/$/;"	m	struct:asTypeInfo
sqlNeedQuickNum	hg/lib/jksql.c	/^int sqlNeedQuickNum(struct sqlConnection *conn, char *query)$/;"	f
sqlNeedQuickQuery	hg/lib/jksql.c	/^char *sqlNeedQuickQuery(struct sqlConnection *sc, char *query,$/;"	f
sqlNeedQuickString	hg/lib/jksql.c	/^char *sqlNeedQuickString(struct sqlConnection *sc, char *query)$/;"	f
sqlNextRow	hg/lib/jksql.c	/^char **sqlNextRow(struct sqlResult *sr)$/;"	f
sqlNumOpenConnections	hg/lib/jksql.c	/^static unsigned sqlNumOpenConnections = 0;$/;"	v	file:
sqlOpenConnections	hg/lib/jksql.c	/^static struct dlList *sqlOpenConnections = NULL;$/;"	v	typeref:struct:dlList	file:
sqlParanoid	hg/lib/jksql.c	/^static boolean sqlParanoid = FALSE;         \/* extra squawking *\/$/;"	v	file:
sqlPrintStats	hg/lib/jksql.c	/^void sqlPrintStats(FILE *fh)$/;"	f
sqlProfile	hg/lib/jksql.c	/^struct sqlProfile$/;"	s	file:
sqlProfileAddDb	hg/lib/jksql.c	/^void sqlProfileAddDb(char *profileName, char *db)$/;"	f
sqlProfileAddDbs	hg/lib/jksql.c	/^static void sqlProfileAddDbs(struct slName *cnames)$/;"	f	file:
sqlProfileAddProfIf	hg/lib/jksql.c	/^static void sqlProfileAddProfIf(char *profileName)$/;"	f	file:
sqlProfileAddProfs	hg/lib/jksql.c	/^static void sqlProfileAddProfs(struct slName *cnames)$/;"	f	file:
sqlProfileAssocDb	hg/lib/jksql.c	/^static void sqlProfileAssocDb(struct sqlProfile *sp, char *db)$/;"	f	file:
sqlProfileConfig	hg/lib/jksql.c	/^void sqlProfileConfig(char *profileName, char *host, unsigned int port,$/;"	f
sqlProfileConfigDefault	hg/lib/jksql.c	/^void sqlProfileConfigDefault(char *host, unsigned int port, char *socket,$/;"	f
sqlProfileCreate	hg/lib/jksql.c	/^static void sqlProfileCreate(char *profileName, char *host, unsigned int port,$/;"	f	file:
sqlProfileFindByDatabase	hg/lib/jksql.c	/^static struct sqlProfile* sqlProfileFindByDatabase(char *database)$/;"	f	file:
sqlProfileFindByName	hg/lib/jksql.c	/^static struct sqlProfile* sqlProfileFindByName(char *profileName, char *database)$/;"	f	file:
sqlProfileGet	hg/lib/jksql.c	/^static struct sqlProfile* sqlProfileGet(char *profileName, char *database)$/;"	f	file:
sqlProfileGetNames	hg/lib/jksql.c	/^struct slName* sqlProfileGetNames()$/;"	f
sqlProfileLoad	hg/lib/jksql.c	/^static void sqlProfileLoad(void)$/;"	f	file:
sqlProfileMustGet	hg/lib/jksql.c	/^static struct sqlProfile* sqlProfileMustGet(char *profileName, char *database)$/;"	f	file:
sqlProfileNew	hg/lib/jksql.c	/^static struct sqlProfile *sqlProfileNew(char *profileName, char *host, unsigned int port,$/;"	f	file:
sqlQueryMulti	hg/inc/jksql.h	/^    sqlQueryMulti  = 0x04  \/* can get more than one row back *\/$/;"	e	enum:sqlQueryOpts
sqlQueryMust	hg/inc/jksql.h	/^    sqlQueryMust   = 0x01, \/* must get a row back, or error *\/$/;"	e	enum:sqlQueryOpts
sqlQueryObjs	hg/lib/jksql.c	/^void *sqlQueryObjs(struct sqlConnection *conn, sqlLoadFunc loadFunc,$/;"	f
sqlQueryOpts	hg/inc/jksql.h	/^enum sqlQueryOpts$/;"	g
sqlQuerySingle	hg/inc/jksql.h	/^    sqlQuerySingle = 0x02, \/* must get no more than one row back *\/$/;"	e	enum:sqlQueryOpts
sqlQuickDouble	hg/lib/jksql.c	/^double sqlQuickDouble(struct sqlConnection *conn, char *query)$/;"	f
sqlQuickDoubleList	hg/lib/jksql.c	/^struct slDouble *sqlQuickDoubleList(struct sqlConnection *conn, char *query)$/;"	f
sqlQuickHash	hg/lib/jksql.c	/^struct hash *sqlQuickHash(struct sqlConnection *conn, char *query)$/;"	f
sqlQuickList	hg/lib/jksql.c	/^struct slName *sqlQuickList(struct sqlConnection *conn, char *query)$/;"	f
sqlQuickNonemptyString	hg/lib/jksql.c	/^char *sqlQuickNonemptyString(struct sqlConnection *conn, char *query)$/;"	f
sqlQuickNum	hg/lib/jksql.c	/^int sqlQuickNum(struct sqlConnection *conn, char *query)$/;"	f
sqlQuickNumList	hg/lib/jksql.c	/^struct slInt *sqlQuickNumList(struct sqlConnection *conn, char *query)$/;"	f
sqlQuickQuery	hg/lib/jksql.c	/^char *sqlQuickQuery(struct sqlConnection *sc, char *query, char *buf, int bufSize)$/;"	f
sqlQuickString	hg/lib/jksql.c	/^char *sqlQuickString(struct sqlConnection *sc, char *query)$/;"	f
sqlRandomSample	hg/lib/jksql.c	/^struct slName *sqlRandomSample(char *db, char *table, char *field, int count)$/;"	f
sqlRandomSampleConn	hg/lib/jksql.c	/^struct slName *sqlRandomSampleConn(struct sqlConnection *conn, char *table,$/;"	f
sqlRandomSampleWithSeed	hg/lib/jksql.c	/^struct slName *sqlRandomSampleWithSeed(char *db, char *table, char *field, int count, int seed)$/;"	f
sqlRandomSampleWithSeedConn	hg/lib/jksql.c	/^struct slName *sqlRandomSampleWithSeedConn(struct sqlConnection *conn, char *table, char *field, int count, int seed)$/;"	f
sqlRangeExp	hg/lib/hgFind.c	/^char *sqlRangeExp = $/;"	v
sqlReleaseLock	hg/lib/jksql.c	/^void sqlReleaseLock(struct sqlConnection *sc, char *name)$/;"	f
sqlRemakeTable	hg/lib/jksql.c	/^void sqlRemakeTable(struct sqlConnection *sc, char *table, char *create)$/;"	f
sqlRenameTable	hg/lib/jksql.c	/^void sqlRenameTable(struct sqlConnection *sc, char *table1, char *table2)$/;"	f
sqlResult	hg/lib/jksql.c	/^struct sqlResult$/;"	s	file:
sqlRowCount	hg/lib/jksql.c	/^int sqlRowCount(struct sqlConnection *conn, char *queryTblAndCondition)$/;"	f
sqlRowExists	hg/lib/jksql.c	/^boolean sqlRowExists(struct sqlConnection *conn,$/;"	f
sqlSaveQuery	hg/lib/jksql.c	/^int sqlSaveQuery(struct sqlConnection *conn, char *query, char *outPath, boolean isFa)$/;"	f
sqlSetComma	lib/sqlList.c	/^unsigned sqlSetComma(char **pS, char **values, struct hash **valHashPtr)$/;"	f
sqlSetParanoid	hg/lib/jksql.c	/^void sqlSetParanoid(boolean beParanoid)$/;"	f
sqlSetParse	lib/sqlList.c	/^unsigned sqlSetParse(char *valStr, char **values, struct hash **valHashPtr)$/;"	f
sqlSetPrint	lib/sqlList.c	/^void sqlSetPrint(FILE *f, unsigned value, char **values)$/;"	f
sqlShortArray	lib/sqlList.c	/^int sqlShortArray(char *s, short *array, int arraySize)$/;"	f
sqlShortArrayToString	lib/sqlList.c	/^char *sqlShortArrayToString( short *array, int arraySize)$/;"	f
sqlShortDynamicArray	lib/sqlList.c	/^void sqlShortDynamicArray(char *s, short **retArray, int *retSize)$/;"	f
sqlShortStaticArray	lib/sqlList.c	/^void sqlShortStaticArray(char *s, short **retArray, int *retSize)$/;"	f
sqlSigned	lib/sqlNum.c	/^int sqlSigned(char *s)$/;"	f
sqlSignedArray	lib/sqlList.c	/^int sqlSignedArray(char *s, int *array, int arraySize)$/;"	f
sqlSignedArrayToString	lib/sqlList.c	/^char *sqlSignedArrayToString( int *array, int arraySize)$/;"	f
sqlSignedComma	lib/sqlList.c	/^int sqlSignedComma(char **pS)$/;"	f
sqlSignedDynamicArray	lib/sqlList.c	/^void sqlSignedDynamicArray(char *s, int **retArray, int *retSize)$/;"	f
sqlSignedForgiving	hg/lib/retroMrnaInfo.c	/^int sqlSignedForgiving(char *s)$/;"	f
sqlSignedInList	lib/sqlNum.c	/^int sqlSignedInList(char **pS)$/;"	f
sqlSignedStaticArray	lib/sqlList.c	/^void sqlSignedStaticArray(char *s, int **retArray, int *retSize)$/;"	f
sqlStoreResult	hg/lib/jksql.c	/^struct sqlResult *sqlStoreResult(struct sqlConnection *sc, char *query)$/;"	f
sqlStringArray	lib/sqlList.c	/^int sqlStringArray(char *s, char **array, int maxArraySize)$/;"	f
sqlStringArrayToString	lib/sqlList.c	/^char *sqlStringArrayToString( char **array, int arraySize)$/;"	f
sqlStringComma	lib/sqlList.c	/^char *sqlStringComma(char **pS)$/;"	f
sqlStringDynamicArray	lib/sqlList.c	/^void sqlStringDynamicArray(char *s, char ***retArray, int *retSize)$/;"	f
sqlStringFreeDynamicArray	lib/sqlList.c	/^void sqlStringFreeDynamicArray(char ***pArray)$/;"	f
sqlStringStaticArray	lib/sqlList.c	/^void sqlStringStaticArray(char *s, char  ***retArray, int *retSize)$/;"	f
sqlSymDef	lib/asParse.c	/^static void sqlSymDef(struct asColumn *col, struct dyString *dy)$/;"	f	file:
sqlTableExists	hg/lib/jksql.c	/^boolean sqlTableExists(struct sqlConnection *sc, char *table)$/;"	f
sqlTableHasIndexOn	hg/lib/annoStreamDb.c	/^boolean sqlTableHasIndexOn(struct sqlConnection *conn, char *table, char *field)$/;"	f
sqlTableSize	hg/lib/jksql.c	/^int sqlTableSize(struct sqlConnection *conn, char *table)$/;"	f
sqlTableSizeIfExists	hg/lib/jksql.c	/^int sqlTableSizeIfExists(struct sqlConnection *sc, char *table)$/;"	f
sqlTableUpdate	hg/lib/jksql.c	/^char *sqlTableUpdate(struct sqlConnection *conn, char *table)$/;"	f
sqlTableUpdateTime	hg/lib/jksql.c	/^time_t sqlTableUpdateTime(struct sqlConnection *conn, char *table)$/;"	f
sqlTableWildExists	hg/lib/jksql.c	/^boolean sqlTableWildExists(struct sqlConnection *sc, char *table)$/;"	f
sqlTablesExist	hg/lib/jksql.c	/^boolean sqlTablesExist(struct sqlConnection *conn, char *tables)$/;"	f
sqlTempTableName	hg/lib/jksql.c	/^char *sqlTempTableName(struct sqlConnection *conn, char *prefix)$/;"	f
sqlTotalQueries	hg/lib/jksql.c	/^static long sqlTotalQueries = 0;            \/* total number of queries *\/$/;"	v	file:
sqlTotalTime	hg/lib/jksql.c	/^static long long sqlTotalTime = 0;          \/* total real milliseconds *\/$/;"	v	file:
sqlUbyteArray	lib/sqlList.c	/^int sqlUbyteArray(char *s, unsigned char *array, int arraySize)$/;"	f
sqlUbyteArrayToString	lib/sqlList.c	/^char *sqlUbyteArrayToString( unsigned char *array, int arraySize)$/;"	f
sqlUbyteDynamicArray	lib/sqlList.c	/^void sqlUbyteDynamicArray(char *s, unsigned char **retArray, int *retSize)$/;"	f
sqlUbyteStaticArray	lib/sqlList.c	/^void sqlUbyteStaticArray(char *s, unsigned char **retArray, int *retSize)$/;"	f
sqlUnixTimeToDate	hg/lib/jksql.c	/^char *sqlUnixTimeToDate(time_t *timep, boolean gmTime)$/;"	f
sqlUnsigned	lib/sqlNum.c	/^unsigned sqlUnsigned(char *s)$/;"	f
sqlUnsignedArray	lib/sqlList.c	/^int sqlUnsignedArray(char *s, unsigned *array, int arraySize)$/;"	f
sqlUnsignedArrayToString	lib/sqlList.c	/^char *sqlUnsignedArrayToString( unsigned *array, int arraySize)$/;"	f
sqlUnsignedComma	lib/sqlList.c	/^int sqlUnsignedComma(char **pS)$/;"	f
sqlUnsignedDynamicArray	lib/sqlList.c	/^void sqlUnsignedDynamicArray(char *s, unsigned **retArray, int *retSize)$/;"	f
sqlUnsignedInList	lib/sqlNum.c	/^unsigned sqlUnsignedInList(char **pS)$/;"	f
sqlUnsignedLong	lib/sqlNum.c	/^unsigned long sqlUnsignedLong(char *s)$/;"	f
sqlUnsignedLongInList	lib/sqlNum.c	/^unsigned long sqlUnsignedLongInList(char **pS)$/;"	f
sqlUnsignedStaticArray	lib/sqlList.c	/^void sqlUnsignedStaticArray(char *s, unsigned **retArray, int *retSize)$/;"	f
sqlUpdate	hg/lib/jksql.c	/^void sqlUpdate(struct sqlConnection *conn, char *query)$/;"	f
sqlUpdateRows	hg/lib/jksql.c	/^int sqlUpdateRows(struct sqlConnection *conn, char *query, int* matched)$/;"	f
sqlUseOrStore	hg/lib/jksql.c	/^static struct sqlResult *sqlUseOrStore(struct sqlConnection *sc,$/;"	f	file:
sqlUshortArray	lib/sqlList.c	/^int sqlUshortArray(char *s, unsigned short *array, int arraySize)$/;"	f
sqlUshortArrayToString	lib/sqlList.c	/^char *sqlUshortArrayToString( unsigned short *array, int arraySize)$/;"	f
sqlUshortDynamicArray	lib/sqlList.c	/^void sqlUshortDynamicArray(char *s, unsigned short **retArray, int *retSize)$/;"	f
sqlUshortStaticArray	lib/sqlList.c	/^void sqlUshortStaticArray(char *s, unsigned short **retArray, int *retSize)$/;"	f
sqlVaQueryObjs	hg/lib/jksql.c	/^void *sqlVaQueryObjs(struct sqlConnection *conn, sqlLoadFunc loadFunc,$/;"	f
sqlVaWarn	hg/lib/jksql.c	/^void sqlVaWarn(struct sqlConnection *sc, char *format, va_list args)$/;"	f
sqlVersion	hg/lib/jksql.c	/^char *sqlVersion(struct sqlConnection *conn)$/;"	f
sqlWarn	hg/lib/jksql.c	/^void sqlWarn(struct sqlConnection *sc, char *format, ...)$/;"	f
sqlWarnCount	hg/lib/jksql.c	/^int sqlWarnCount(struct sqlConnection *conn)$/;"	f
sqlWarnings	hg/lib/jksql.c	/^void sqlWarnings(struct sqlConnection *conn, int numberOfWarnings)$/;"	f
sqlWildcardIn	hg/lib/jksql.c	/^boolean sqlWildcardIn(char *s)$/;"	f
squeezeHits8	jkOwnLib/crudeali.c	/^void squeezeHits8(struct fastProber *fp, $/;"	f
sr	hg/inc/wiggle.h	/^    struct sqlResult *sr;	\/*	SQL result when talking to db	*\/$/;"	m	struct:wiggleDataStream	typeref:struct:wiggleDataStream::sqlResult
sr	hg/lib/annoStreamDb.c	/^    struct sqlResult *sr;		\/\/ SQL query result from which we grab rows$/;"	m	struct:annoStreamDb	typeref:struct:annoStreamDb::sqlResult	file:
sr	hg/lib/genePredReader.c	/^    struct sqlResult *sr;   \/* results if reading from a DB *\/$/;"	m	struct:genePredReader	typeref:struct:genePredReader::sqlResult	file:
sr	hg/lib/pslReader.c	/^    struct sqlResult *sr;   \/* results if reading from a DB *\/$/;"	m	struct:pslReader	typeref:struct:pslReader::sqlResult	file:
src	hg/inc/gv.h	/^    char *src;	\/* name of genome wide source or LSDB *\/$/;"	m	struct:gvSrc
src	hg/inc/mafFrames.h	/^    char *src;	\/* Name of sequence source in MAF *\/$/;"	m	struct:mafFrames
src	hg/inc/mafSummary.h	/^    char *src;	\/* Sequence name or database of alignment *\/$/;"	m	struct:mafSummary
src	inc/maf.h	/^    char *src;	 \/* Name of sequence source.  *\/$/;"	m	struct:mafComp
src	inc/seg.h	/^	char *src;		\/* Name of segment source. *\/$/;"	m	struct:segComp
srcDb	hg/inc/ccdsInfo.h	/^    enum ccdsInfoSrcDb srcDb;	\/* source database: N=NCBI, H=Hinxton *\/$/;"	m	struct:ccdsInfo	typeref:enum:ccdsInfo::ccdsInfoSrcDb
srcDb	hg/inc/gbSeq.h	/^    enum gbSeqSrcDb srcDb;	\/* Source database *\/$/;"	m	struct:gbSeq	typeref:enum:gbSeq::gbSeqSrcDb
srcDb	hg/inc/transMapInfo.h	/^    char srcDb[17];	\/* source db *\/$/;"	m	struct:transMapInfo
srcId	hg/inc/gv.h	/^    char *srcId;	\/* key into gv table *\/$/;"	m	struct:gvSrc
srcId	hg/inc/gv.h	/^    char *srcId;	\/* source ID for this mutation *\/$/;"	m	struct:gv
srcId	hg/inc/protVar.h	/^    char *srcId;	\/* source ID for this mutation *\/$/;"	m	struct:protVar
srcId	hg/inc/transMapInfo.h	/^    char *srcId;	\/* id of source alignment *\/$/;"	m	struct:transMapInfo
srcSize	inc/maf.h	/^    int srcSize; \/* Size of sequence source.  *\/$/;"	m	struct:mafComp
srcSize	inc/seg.h	/^	int srcSize;	\/* Size of segment source. *\/$/;"	m	struct:segComp
srcUrl	hg/inc/pgPhenoAssoc.h	/^    char *srcUrl;	\/* link back to source database *\/$/;"	m	struct:pgPhenoAssoc
ss	inc/chainConnect.h	/^    struct axtScoreScheme *ss;$/;"	m	struct:chainConnect	typeref:struct:chainConnect::axtScoreScheme
ss	lib/mafScore.c	/^static ss_t ss;$/;"	v	file:
ssAliCount	jkOwnLib/gfBlatLib.c	/^static int ssAliCount = 16;	\/* Number of alignments returned by ssStitch. *\/$/;"	v	file:
ssBundle	inc/supStitch.h	/^struct ssBundle$/;"	s
ssBundleFree	jkOwnLib/supStitch.c	/^void ssBundleFree(struct ssBundle **pEl)$/;"	f
ssBundleFreeList	jkOwnLib/supStitch.c	/^void ssBundleFreeList(struct ssBundle **pList)$/;"	f
ssConnectCost	jkOwnLib/supStitch.c	/^static int ssConnectCost(struct cBlock *a, struct cBlock *b, void *data)$/;"	f	file:
ssCount	hg/inc/chr18deletions.h	/^    unsigned ssCount;	\/* Number of small blocks *\/$/;"	m	struct:chr18deletions
ssDynamicProgram	jkOwnLib/supStitch.c	/^static struct ssNode *ssDynamicProgram(struct ssGraph *graph)$/;"	f	file:
ssEdge	jkOwnLib/supStitch.c	/^struct ssEdge$/;"	s	file:
ssFfItem	inc/supStitch.h	/^struct ssFfItem$/;"	s
ssFfItemFree	jkOwnLib/supStitch.c	/^void ssFfItemFree(struct ssFfItem **pEl)$/;"	f
ssFfItemFreeList	jkOwnLib/supStitch.c	/^void ssFfItemFreeList(struct ssFfItem **pList)$/;"	f
ssFindBest	jkOwnLib/supStitch.c	/^static void ssFindBest(struct ffAli *ffList, bioSeq *qSeq, bioSeq *tSeq,$/;"	f	file:
ssFindBestBig	jkOwnLib/supStitch.c	/^static void ssFindBestBig(struct ffAli *ffList, bioSeq *qSeq, bioSeq *tSeq,$/;"	f	file:
ssFindBestSmall	jkOwnLib/supStitch.c	/^static void ssFindBestSmall(struct ffAli *ffList, bioSeq *qSeq, bioSeq *tSeq,$/;"	f	file:
ssFindBundles	jkOwnLib/supStitch.c	/^struct ssBundle *ssFindBundles(struct patSpace *ps, struct dnaSeq *cSeq, $/;"	f
ssGapCost	jkOwnLib/supStitch.c	/^static int ssGapCost(int dq, int dt, void *data)$/;"	f	file:
ssGraph	jkOwnLib/supStitch.c	/^struct ssGraph$/;"	s	file:
ssGraphFindBest	jkOwnLib/supStitch.c	/^static void ssGraphFindBest(struct ssGraph *graph, struct ffAli **retBestAli, $/;"	f	file:
ssGraphFree	jkOwnLib/supStitch.c	/^static void ssGraphFree(struct ssGraph **pGraph)$/;"	f	file:
ssGraphMake	jkOwnLib/supStitch.c	/^static struct ssGraph *ssGraphMake(struct ffAli *ffList, bioSeq *qSeq,$/;"	f	file:
ssIsProt	jkOwnLib/supStitch.c	/^static boolean ssIsProt;$/;"	v	file:
ssNode	jkOwnLib/supStitch.c	/^struct ssNode$/;"	s	file:
ssStitch	jkOwnLib/supStitch.c	/^void ssStitch(struct ssBundle *bundle, enum ffStringency stringency, $/;"	f
ssStringency	jkOwnLib/supStitch.c	/^static enum ffStringency ssStringency;$/;"	v	typeref:enum:ffStringency	file:
ss_t	lib/mafScore.c	/^typedef int ss_t[NACHARS][NACHARS];$/;"	t	file:
stack	inc/genomeRangeTree.h	/^    struct rbTreeNode *stack[128]; \/* Stack for binary search. *\/$/;"	m	struct:genomeRangeTree	typeref:struct:genomeRangeTree::rbTreeNode
stack	inc/peakCluster.h	/^    struct rbTreeNode *stack[128]; \/* Stack for rbTree evaluations. *\/$/;"	m	struct:peakClusterMaker	typeref:struct:peakClusterMaker::rbTreeNode
stack	inc/rbTree.h	/^    struct rbTreeNode **stack;                  \/* Ancestor stack. *\/$/;"	m	struct:rbTree	typeref:struct:rbTree::rbTreeNode
stack	inc/xap.h	/^   struct xapStack *stack;			\/* Top of stack of open tags. *\/$/;"	m	struct:xap	typeref:struct:xap::xapStack
stack	inc/xp.h	/^    struct xpStack *stack;		\/* Current top of stack. *\/$/;"	m	struct:xp	typeref:struct:xp::xpStack
stack	lib/dnaLoad.c	/^    struct dnaLoadStack *stack;	\/* Stack of files we're working on. *\/$/;"	m	struct:dnaLoad	typeref:struct:dnaLoad::dnaLoadStack	file:
stackBuf	inc/xap.h	/^   struct xapStack stackBuf[128];		\/* Stack buffer. *\/$/;"	m	struct:xap	typeref:struct:xap::xapStack
stackBuf	inc/xp.h	/^    struct xpStack stackBuf[64];	\/* Stack buffer and start of stack. *\/$/;"	m	struct:xp	typeref:struct:xp::xpStack
stackBufEnd	inc/xp.h	/^    struct xpStack *stackBufEnd;	\/* End of stack buffer. *\/$/;"	m	struct:xp	typeref:struct:xp::xpStack
stackDepth	inc/xap.h	/^   int stackDepth;				\/* Number of elements in stack. *\/$/;"	m	struct:xap
stackDumpDisabled	hg/lib/hCommon.c	/^static boolean stackDumpDisabled = FALSE;  \/\/ prevent accidental recursion or undesired dumps$/;"	v	file:
stage	hg/inc/clonePos.h	/^    char stage[2];	\/* F\/D\/P for finished\/draft\/predraft *\/$/;"	m	struct:clonePos
stampDesc	hg/inc/pbStamp.h	/^    char *stampDesc;	\/* Description of the stamp *\/$/;"	m	struct:pbStamp
stampName	hg/inc/pbStamp.h	/^    char stampName[41];	\/* Short Name of stamp *\/$/;"	m	struct:pbStamp
stampTable	hg/inc/pbStamp.h	/^    char stampTable[41];	\/* Database table name of the stamp (distribution) data *\/$/;"	m	struct:pbStamp
stampTitle	hg/inc/pbStamp.h	/^    char stampTitle[41];	\/* Stamp Title to be displayed *\/$/;"	m	struct:pbStamp
stanMad	hg/inc/stanMad.h	/^struct stanMad$/;"	s
stanMadCommaIn	hg/lib/stanMad.c	/^struct stanMad *stanMadCommaIn(char **pS, struct stanMad *ret)$/;"	f
stanMadCommaOut	hg/inc/stanMad.h	84;"	d
stanMadFree	hg/lib/stanMad.c	/^void stanMadFree(struct stanMad **pEl)$/;"	f
stanMadFreeList	hg/lib/stanMad.c	/^void stanMadFreeList(struct stanMad **pList)$/;"	f
stanMadLoad	hg/lib/stanMad.c	/^struct stanMad *stanMadLoad(char **row)$/;"	f
stanMadLoadAll	hg/lib/stanMad.c	/^struct stanMad *stanMadLoadAll(char *fileName) $/;"	f
stanMadOutput	hg/lib/stanMad.c	/^void stanMadOutput(struct stanMad *el, FILE *f, char sep, char lastSep) $/;"	f
stanMadStaticLoad	hg/lib/stanMad.c	/^void stanMadStaticLoad(char **row, struct stanMad *ret)$/;"	f
stanMadTabOut	hg/inc/stanMad.h	81;"	d
starOut	lib/common.c	/^void starOut(FILE *f, int count)$/;"	f
start	hg/inc/altGraphX.h	/^    int start;                  \/* Chrom start. *\/$/;"	m	struct:spliceEdge
start	hg/inc/atomDb.h	/^    unsigned start;	\/* chrom start *\/$/;"	m	struct:atom
start	hg/inc/cdsEvidence.h	/^    int start;	\/* CDS start within transcript, zero based *\/$/;"	m	struct:cdsEvidence
start	hg/inc/cdsOrtho.h	/^    int start;	\/* CDS start within transcript *\/$/;"	m	struct:cdsOrtho
start	hg/inc/cdsPick.h	/^    int start;	\/* CDS start within transcript, zero based *\/$/;"	m	struct:cdsPick
start	hg/inc/dnaProbe.h	/^    int start;	\/* start position in chromosome *\/$/;"	m	struct:dnaProbe
start	hg/inc/dv.h	/^    unsigned start;	\/* Start position *\/$/;"	m	struct:dv
start	hg/inc/featureBits.h	/^    int start, end;	\/* Start\/end half open zero based. *\/$/;"	m	struct:featureBits
start	hg/inc/genbank.h	/^    int start;                    \/* start, in [0..n) coords *\/$/;"	m	struct:genbankCds
start	hg/inc/geneCheck.h	/^    char start[3];	\/* is there a start codon: ok or no *\/$/;"	m	struct:geneCheck
start	hg/inc/geneGraph.h	/^    int start,end;	       \/* Bounds of evidence in chrom coordinates. *\/$/;"	m	struct:ggEvidence
start	hg/inc/glDbRep.h	/^    unsigned start;	\/* Start position in golden path *\/$/;"	m	struct:gl
start	hg/inc/knownToSuper.h	/^    int start;	\/* Start of superfamily domain in protein (0 based) *\/$/;"	m	struct:knownToSuper
start	hg/inc/protFeat.h	/^    int start;	\/* Start of feature (zero based) *\/$/;"	m	struct:protFeat
start	hg/inc/rangeTreeFile.h	/^    bits32 start;$/;"	m	struct:rangeStartSize
start	hg/inc/spDb.h	/^    int start;	\/* Start coordinate (zero-based) *\/$/;"	m	struct:spFeature
start	hg/inc/txGraph.h	/^    int start;	\/* Start position *\/$/;"	m	struct:txEvidence
start	hg/lib/chromGraph.c	/^    struct chromGraph *start;	\/* First element in this chrom *\/$/;"	m	struct:cInfo	typeref:struct:cInfo::chromGraph	file:
start	hg/lib/liftOver.c	/^     int start;		\/* Start 0 based *\/$/;"	m	struct:liftRange	file:
start	hg/lib/mafGene.c	/^    int start, end;$/;"	m	struct:speciesInfo	file:
start	hg/lib/wiggleUtils.c	/^    unsigned start;	\/* beginning chrom position *\/$/;"	m	struct:wigStatsAcc	file:
start	inc/annoRow.h	/^    uint start;$/;"	m	struct:annoRow
start	inc/bbiFile.h	/^    bits32 start, end;			\/* Position in chromosome, half open. *\/$/;"	m	struct:bbiInterval
start	inc/bbiFile.h	/^    bits32 start,end;		\/* Range of chromosome covered. *\/$/;"	m	struct:bbiSummary
start	inc/bbiFile.h	/^    bits32 start,end;		\/* Range of chromosome covered. *\/$/;"	m	struct:bbiSummaryOnDisk
start	inc/bigBed.h	/^    bits32 start, end;		\/* Range inside chromosome - half open zero based. *\/$/;"	m	struct:bigBedInterval
start	inc/bigBed.h	/^    bits32 start, end;		\/* Range inside chromosome - half open zero based. *\/$/;"	m	struct:ppBed
start	inc/binRange.h	/^    int start, end;		\/* 0 based, half open range *\/$/;"	m	struct:binElement
start	inc/bwgInternal.h	/^    bits32 start,end;			\/* Range of chromosome covered. *\/$/;"	m	struct:bwgSection
start	inc/bwgInternal.h	/^    bits32 start,end;		\/* Range of chromosome covered. *\/$/;"	m	struct:bwgBedGraphItem
start	inc/bwgInternal.h	/^    bits32 start,end;	\/* Range covered. *\/$/;"	m	struct:bwgSectionHead
start	inc/bwgInternal.h	/^    bits32 start;		\/* Start position in chromosome. *\/$/;"	m	struct:bwgVariableStepItem
start	inc/bwgInternal.h	/^    bits32 start;		\/* Start position in chromosome. *\/$/;"	m	struct:bwgVariableStepPacked
start	inc/cirTree.h	/^    bits32 start;	\/* Start position in chromosome. *\/$/;"	m	struct:cirTreeRange
start	inc/crTree.h	/^    bits32 start;	\/* Start position in chromosome. *\/$/;"	m	struct:crTreeItem
start	inc/crudeali.h	/^    int start, end;$/;"	m	struct:crudeAli
start	inc/gdf.h	/^    int start;$/;"	m	struct:gdfDataPoint
start	inc/genoFind.h	/^    bits32 start,end;	\/* Position within merged sequence. *\/$/;"	m	struct:gfSeqSource
start	inc/gff.h	/^    int start;      \/* Start of feature in sequence. Starts with 0, not 1 *\/$/;"	m	struct:gffGroup
start	inc/gff.h	/^    int start;      \/* Start of feature in sequence. Starts with 0, not 1 *\/$/;"	m	struct:gffLine
start	inc/gff3.h	/^    int start;      \/* bounds of region *\/$/;"	m	struct:gff3SeqRegion
start	inc/gff3.h	/^    int start; \/* The start and end of the feature, in 0-based, half open$/;"	m	struct:gff3Ann
start	inc/htmlPage.h	/^    char *start;  \/* Start of this tag.  Not allocated here.*\/$/;"	m	struct:htmlTag
start	inc/maf.h	/^    int start;	 \/* Start within sequence. Zero based. If strand is - is relative to src end. *\/$/;"	m	struct:mafComp
start	inc/oldGff.h	/^    long start, end;$/;"	m	struct:gffGene
start	inc/oldGff.h	/^    long start, end;$/;"	m	struct:gffSegment
start	inc/patSpace.h	/^    int start;                 \/* Start offset within sequence. *\/$/;"	m	struct:patClump
start	inc/rangeTree.h	/^    int start,end;	\/* Zero based half open interval. *\/$/;"	m	struct:range
start	inc/seg.h	/^	int start;		\/* Start of segment. Zero based. If strand is - it is *\/$/;"	m	struct:segComp
start	inc/spacedColumn.h	/^    int start;	\/* Starting index. *\/$/;"	m	struct:spacedColumn
start	inc/trans3.h	/^     int start,end;			\/* Start\/end of sequence in a larger context. *\/$/;"	m	struct:trans3
start	inc/twoBit.h	/^    bits32 start;              \/* start of subsequence 0 *\/$/;"	m	struct:twoBitSeqSpec
start	inc/wormdna.h	/^    int start, end;$/;"	m	struct:wormFeature
start	lib/crTree.c	/^    bits32 start;	\/* Start position in chromosome. *\/$/;"	m	struct:crTreeRange	file:
start	lib/oldGff.c	/^    long start, end;   \/* Offsets into DNA array, end inclusive *\/$/;"	m	struct:gffSegLine	file:
start3	hg/inc/estPair.h	/^    unsigned start3;	\/* Start position of 3' EST in chromosome *\/$/;"	m	struct:estPair
start5	hg/inc/estPair.h	/^    unsigned start5;	\/* Start position of 5' EST in chromosome *\/$/;"	m	struct:estPair
startBac	hg/inc/ggDbRep.h	/^    unsigned startBac;	\/* First bac touched by graph *\/$/;"	m	struct:altGraph
startBac	hg/inc/hgGene.h	/^    unsigned startBac;	\/* Bac this starts in *\/$/;"	m	struct:hgGene
startBac	hg/inc/hgGene.h	/^    unsigned startBac;	\/* Bac this starts in *\/$/;"	m	struct:hgTranscript
startBac	inc/hgGene.h	/^    unsigned startBac;	\/* Bac this starts in *\/$/;"	m	struct:hgGene
startBac	inc/hgGene.h	/^    unsigned startBac;	\/* Bac this starts in *\/$/;"	m	struct:hgTranscript
startBase	inc/cirTree.h	/^    bits32 startBase;		\/* Starting base position. *\/$/;"	m	struct:cirTreeFile
startBase	lib/cirTree.c	/^    bits32 startBase;		\/* Starting base position. *\/$/;"	m	struct:rTree	file:
startChromIx	inc/cirTree.h	/^    bits32 startChromIx;	\/* First chromosome in file. *\/$/;"	m	struct:cirTreeFile
startChromIx	lib/cirTree.c	/^    bits32 startChromIx;	\/* Starting chromosome. *\/$/;"	m	struct:rTree	file:
startCodon	hg/inc/easyGene.h	/^    char *startCodon;	\/* Start Codon *\/$/;"	m	struct:easyGene
startColIx	inc/peakCluster.h	/^    int startColIx;		\/* Start coordinate column index. *\/$/;"	m	struct:peakSource
startComplete	hg/inc/cdsEvidence.h	/^    unsigned char startComplete;	\/* Starts with ATG? *\/$/;"	m	struct:cdsEvidence
startComplete	hg/inc/cdsPick.h	/^    unsigned char startComplete;	\/* Starts with ATG? *\/$/;"	m	struct:cdsPick
startComplete	hg/inc/genbank.h	/^    boolean startComplete;        \/* is start complete? *\/ $/;"	m	struct:genbankCds
startComplete	hg/inc/txInfo.h	/^    unsigned char startComplete;	\/* Starts with ATG *\/$/;"	m	struct:txInfo
startContig	hg/inc/bactigPos.h	/^    char *startContig;	\/* First contig in this bactig *\/$/;"	m	struct:bactigPos
startControlGrid	hg/lib/hui.c	/^struct controlGrid *startControlGrid(int columns, char *align)$/;"	f
startCookie	lib/memalloc.c	/^    int startCookie;$/;"	m	struct:carefulMemBlock	file:
startData	lib/udc.c	/^    bits64 startData;		\/* Start of area in file we know to have data. *\/$/;"	m	struct:udcFile	file:
startExon	inc/ens.h	/^    struct ensExon *startExon;          \/* Reference to first coding exon. *\/$/;"	m	struct:ensTranscript	typeref:struct:ensTranscript::ensExon
startExpCell	hg/lib/hgExp.c	/^static void startExpCell()$/;"	f	file:
startField	hg/inc/hdb.h	/^    char startField[HDB_MAX_FIELD_STRING];	\/* Name of chromosome start field. *\/$/;"	m	struct:hTableInfo
startField	hg/lib/annoStreamDb.c	/^    char *startField;			\/\/ Name of chromStart-ish column in table$/;"	m	struct:annoStreamDb	file:
startFileOffset	lib/cirTree.c	/^    bits64 startFileOffset;	\/* Start offset in file for leaves. *\/$/;"	m	struct:rTree	file:
startGood	inc/cda.h	/^    UBYTE startGood, endGood;   \/* Number of bases matching perfectly on end *\/$/;"	m	struct:cdaBlock
startGood	inc/fuzzyFind.h	/^    int startGood, endGood; \/* Number that match perfectly on ends. *\/$/;"	m	struct:ffAli
startGoods	inc/maDbRep.h	/^    unsigned short *startGoods;	\/* Number of perfect bases at start of block *\/$/;"	m	struct:mrnaAli
startHandler	inc/xap.h	/^   void *(*startHandler)(struct xap *xap, char *name, char **atts);	\/* Handler for start tags. *\/$/;"	m	struct:xap
startIx	hg/inc/txGraph.h	/^    int startIx;	\/* Index of start in vertex array *\/$/;"	m	struct:txEdge
startIx	hg/lib/annoStreamDb.c	/^    int startIx;			\/\/ Index of chromStart-ish col in autoSql or bin-less table$/;"	m	struct:annoStreamDb	file:
startPos	hg/inc/ggDbRep.h	/^    unsigned startPos;	\/* Start position in first bac *\/$/;"	m	struct:altGraph
startPos	hg/inc/hgGene.h	/^    unsigned startPos;	\/* Position within bac where starts *\/$/;"	m	struct:hgGene
startPos	hg/inc/hgGene.h	/^    unsigned startPos;	\/* Position within bac where starts *\/$/;"	m	struct:hgTranscript
startPos	inc/ace.h	/^    int startPos;$/;"	m	struct:aceAF
startPos	inc/hgGene.h	/^    unsigned startPos;	\/* Position within bac where starts *\/$/;"	m	struct:hgGene
startPos	inc/hgGene.h	/^    unsigned startPos;	\/* Position within bac where starts *\/$/;"	m	struct:hgTranscript
startSP6	hg/inc/genMapDb.h	/^    unsigned startSP6;	\/* Start position in chrom for SP6 end sequence *\/$/;"	m	struct:genMapDb
startSeq	inc/ens.h	/^    int startSeq, endSeq;               \/* Start, end of coding region. *\/$/;"	m	struct:ensTranscript
startSeqQuery	jkOwnLib/gfBlatLib.c	/^static void startSeqQuery(int conn, bioSeq *seq, char *type)$/;"	f	file:
startState	jkOwnLib/xensmall.c	264;"	d	file:
startState	jkOwnLib/xensmall.c	464;"	d	file:
startState	lib/axtAffine.c	184;"	d	file:
startState	lib/axtAffine.c	60;"	d	file:
startT7	hg/inc/genMapDb.h	/^    unsigned startT7;	\/* Start position in chrom for T7 end sequence *\/$/;"	m	struct:genMapDb
startTag	inc/htmlPage.h	/^    struct htmlTag *startTag;	\/* Tag that holds <FORM>. Not allocated here.  *\/$/;"	m	struct:htmlForm	typeref:struct:htmlForm::htmlTag
startType	hg/inc/txEdgeBed.h	/^    char startType[2];	\/* [ or ( for hard or soft *\/$/;"	m	struct:txEdgeBed
startType	hg/inc/txEdgeOrtho.h	/^    char startType[2];	\/* [ or ( for hard or soft *\/$/;"	m	struct:txEdgeOrtho
starts	hg/inc/taxonGeneticCode.h	/^    char *starts;	\/* start codons for this genetic code (one AA per codon 1-64) *\/$/;"	m	struct:taxonGeneticCode
startsField	hg/inc/hdb.h	/^    char startsField[HDB_MAX_FIELD_STRING];	\/* Name of exon(block)Starts field. *\/$/;"	m	struct:hTableInfo
startsWith	lib/common.c	/^boolean startsWith(const char *start, const char *string)$/;"	f
startsWithShortHumanChromName	hg/lib/hgFind.c	/^static char *startsWithShortHumanChromName(char *db, char *chrom)$/;"	f	file:
startsWithWord	lib/common.c	/^boolean startsWithWord(char *firstWord, char *line)$/;"	f
startsWithWordByDelimiter	lib/common.c	/^boolean startsWithWordByDelimiter(char *firstWord,char delimit, char *line)$/;"	f
stat	hg/inc/geneCheck.h	/^    char stat[5];	\/* status of overall check: ok or err *\/$/;"	m	struct:geneCheck
statErrno	inc/portable.h	/^    int statErrno;	\/* Result of stat (e.g. bad symlink). *\/$/;"	m	struct:fileInfo
state	inc/md5.h	/^    uint32 state[4];$/;"	m	struct:md5_context
state	lib/pipeline.c	/^    enum procState state;  \/* state of process *\/$/;"	m	struct:plProc	typeref:enum:plProc::procState	file:
stateByteSize	inc/pairHmm.h	/^    int stateByteSize;	\/* Number of bytes used by each state's matrix. *\/$/;"	m	struct:phmmMatrix
stateCount	inc/pairHmm.h	/^    int stateCount;	\/* Number of hidden states in HMM. *\/$/;"	m	struct:phmmMatrix
stateIx	inc/pairHmm.h	/^    int stateIx;		\/* Numerical handle on state. *\/$/;"	m	struct:phmmState
stateSize	inc/pairHmm.h	/^    int stateSize;	\/* Number of cells in each state's matrix. *\/$/;"	m	struct:phmmMatrix
states	inc/pairHmm.h	/^    struct phmmState *states;  \/* Array of states. *\/$/;"	m	struct:phmmMatrix	typeref:struct:phmmMatrix::phmmState
stats	hg/inc/wiggle.h	/^    struct wiggleStats *stats;	\/*	list of wiggle stats	*\/$/;"	m	struct:wiggleDataStream	typeref:struct:wiggleDataStream::wiggleStats
statsDataCmp	hg/lib/wigDataStream.c	/^static int statsDataCmp(const void *va, const void *vb)$/;"	f	file:
statsOut	hg/inc/wiggle.h	/^    void (*statsOut)(struct wiggleDataStream *wds, char *db, char *fileName,$/;"	m	struct:wiggleDataStream
statsOut	hg/lib/wigDataStream.c	/^static void statsOut(struct wiggleDataStream *wds, char *db, char *fileName,$/;"	f	file:
statsPreamble	hg/lib/wigDataStream.c	/^void statsPreamble(struct wiggleDataStream *wds, char *chrom,$/;"	f
status	hg/inc/ensInfo.h	/^    char *status;	\/* Ensembl gene confidence *\/$/;"	m	struct:ensInfo
status	hg/inc/gencodeIntron.h	/^    char *status;	\/* enum('not_tested', 'RT_positive','RT_negative','RT_wrong_junction', 'RT_submitted') *\/$/;"	m	struct:gencodeIntron
status	hg/inc/hgnc.h	/^    char *status;	\/* Status *\/$/;"	m	struct:hgnc
status	hg/inc/hubConnect.h	/^    unsigned  status;   \/* 1 if private *\/$/;"	m	struct:hubConnectStatus
status	hg/inc/kg1ToKg2.h	/^    char *status;	\/* How new\/old correspond. Exact and compatible are good. Overlap, none are bad. *\/$/;"	m	struct:kg1ToKg2
status	hg/inc/refSeqStatus.h	/^    enum refSeqStatusStatus status;	\/* Status of RefSeq *\/$/;"	m	struct:refSeqStatus	typeref:enum:refSeqStatus::refSeqStatusStatus
status	inc/apacheLog.h	/^    int status;		\/* Status code - 200 is good! *\/$/;"	m	struct:apacheAccessLog
status	inc/htmlPage.h	/^    int status;			\/* HTTP status code.  200 is good. *\/$/;"	m	struct:htmlStatus
status	inc/htmlPage.h	/^    struct htmlStatus *status;		\/* Version and status. *\/$/;"	m	struct:htmlPage	typeref:struct:htmlPage::htmlStatus
status	lib/pipeline.c	/^    int status;            \/* status from wait *\/$/;"	m	struct:plProc	file:
stddev	hg/inc/wiggle.h	/^    double stddev;	\/* standard deviation of data points *\/$/;"	m	struct:wiggleStats
stdevs	hg/inc/sage.h	/^    float *stdevs;	\/* Standard deviation of all counts for each experiment *\/$/;"	m	struct:sage
stdioBuf	lib/pipeline.c	/^    char* stdioBuf;            \/* optional stdio buffer *\/$/;"	m	struct:pipeline	file:
stepSize	hg/lib/wigAsciiToBinary.c	/^static unsigned long long stepSize = 1;	\/* for fixedStep *\/$/;"	v	file:
stepSize	inc/genoFind.h	/^    int stepSize;			 \/* Spacing between N-mers. *\/$/;"	m	struct:genoFind
stepTypeLine	lib/bwgCreate.c	/^static boolean stepTypeLine(char *line)$/;"	f	file:
steppedSectionEnd	lib/bwgCreate.c	/^static boolean steppedSectionEnd(char *line, int maxWords)$/;"	f	file:
stickyEnd	hg/lib/cutter.c	/^struct dnaSeq *stickyEnd(struct cutter *enz)$/;"	f
stockNumber	hg/inc/pscreen.h	/^    unsigned stockNumber;	\/* Mutant strain stock number, for ordering *\/$/;"	m	struct:pscreen
stop	hg/inc/geneCheck.h	/^    char stop[3];	\/* is there a stop codon: ok or no *\/$/;"	m	struct:geneCheck
stop	hg/inc/putaInfo.h	/^    unsigned stop;	\/* 1 .. with stop; 0 .. without stop *\/$/;"	m	struct:putaInfo
stop_gained	hg/inc/soterm.h	/^    stop_gained=1587,$/;"	e	enum:__anon11
stop_lost	hg/inc/soterm.h	/^    stop_lost=1578,$/;"	e	enum:__anon11
stop_retained_variant	hg/inc/soterm.h	/^    stop_retained_variant=1567,$/;"	e	enum:__anon11
stops	hg/inc/putaInfo.h	/^    unsigned *stops;	\/* stops for each exon *\/$/;"	m	struct:putaInfo
storeBlocksOfLower	lib/twoBit.c	/^static void storeBlocksOfLower(char *s, int size, bits32 *starts, bits32 *sizes)$/;"	f	file:
storeBlocksOfN	lib/twoBit.c	/^static void storeBlocksOfN(char *s, int size, bits32 *starts, bits32 *sizes)$/;"	f	file:
storeInOldVars	hg/lib/cart.c	/^static void storeInOldVars(struct cart *cart, struct hash *oldVars, char *var)$/;"	f	file:
strLower	lib/common.c	/^char *strLower(char *s)$/;"	f
strPool	inc/gff.h	/^    struct hash *strPool;       \/* hash used to allocate strings *\/$/;"	m	struct:gffFile	typeref:struct:gffFile::hash
strSwapChar	inc/common.h	846;"	d
strSwapStrs	lib/common.c	/^int strSwapStrs(char *string, int sz,char *oldStr, char *newStr)$/;"	f
strUpper	lib/common.c	/^char *strUpper(char *s)$/;"	f
strand	hg/inc/affyTranscriptome.h	/^    char strand[2];	\/* Strand *\/$/;"	m	struct:affyTranscriptome
strand	hg/inc/agpFrag.h	/^    char strand[2];	\/* + or - (orientation of fragment) *\/$/;"	m	struct:agpFrag
strand	hg/inc/alignInfo.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:alignInfo
strand	hg/inc/alleleFreqs.h	/^    char strand;	\/*  strand		+ *\/$/;"	m	struct:alleleFreqs
strand	hg/inc/allpredictions.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:allpredictions
strand	hg/inc/altGraph.h	/^    char strand[3];	\/* + or - strand *\/$/;"	m	struct:altGraph
strand	hg/inc/altGraphX.h	/^    char strand[3];	\/* + or - strand. *\/$/;"	m	struct:altGraphX
strand	hg/inc/arCOGs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:arCOGs
strand	hg/inc/atomDb.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:atom
strand	hg/inc/bed12Source.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:bed12Source
strand	hg/inc/bed12wSeq.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:bed12wSeq
strand	hg/inc/bed6FloatScore.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:bed6FloatScore
strand	hg/inc/bed8Attrs.h	/^    char strand[2];	\/* +, - or . for unknown *\/$/;"	m	struct:bed8Attrs
strand	hg/inc/bedDetail.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:bedDetail
strand	hg/inc/blastzNet.h	/^    char strand[2];	\/* + direction matches - opposite *\/$/;"	m	struct:blastzNet
strand	hg/inc/borf.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:borf
strand	hg/inc/cddInfo.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:cddInfo
strand	hg/inc/chr18deletions.h	/^    char strand[2];	\/* Strand = or - *\/$/;"	m	struct:chr18deletions
strand	hg/inc/cnpRedon.h	/^    char strand[2];	\/* Strand *\/$/;"	m	struct:cnpRedon
strand	hg/inc/codeBlast.h	/^    char strand[2];	\/* Strand *\/$/;"	m	struct:codeBlast
strand	hg/inc/dbRIP.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:dbRIP
strand	hg/inc/delConrad2.h	/^    char strand[2];	\/* Always positive *\/$/;"	m	struct:delConrad2
strand	hg/inc/dgv.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:dgv
strand	hg/inc/dnaProbe.h	/^    char strand[4];	\/* strand that probe is on *\/$/;"	m	struct:dnaProbe
strand	hg/inc/easyGene.h	/^    char strand[2];	\/* Strand *\/$/;"	m	struct:easyGene
strand	hg/inc/ensPhusionBlast.h	/^    char strand[2];	\/* Direction of alignment: + or - *\/$/;"	m	struct:ensPhusionBlast
strand	hg/inc/est3.h	/^    char strand[2];	\/* + or - strand *\/$/;"	m	struct:est3
strand	hg/inc/featureBits.h	/^    char strand;	\/* + or - or ? *\/$/;"	m	struct:featureBits
strand	hg/inc/fosEndPairs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:fosEndPairs
strand	hg/inc/gbRNAs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:gbRNAs
strand	hg/inc/genMapDb.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:genMapDb
strand	hg/inc/gencodeIntron.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:gencodeIntron
strand	hg/inc/geneCheck.h	/^    char strand[2];	\/* strand *\/$/;"	m	struct:geneCheck
strand	hg/inc/geneGraph.h	/^    char strand[3];                         \/* + or - depending on strand *\/$/;"	m	struct:ggMrnaCluster
strand	hg/inc/geneGraph.h	/^    char strand[3];                     \/* + or - *\/$/;"	m	struct:geneGraph
strand	hg/inc/genePred.h	/^    char strand[2];	\/* + or - for strand *\/$/;"	m	struct:genePred
strand	hg/inc/genomicDups.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:genomicDups
strand	hg/inc/genomicSuperDups.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:genomicSuperDups
strand	hg/inc/genotype.h	/^    char strand;	\/*  strand	# + *\/$/;"	m	struct:genotype
strand	hg/inc/genotypeFreqs.h	/^    char strand;	\/* strand		+ *\/$/;"	m	struct:genotypeFreqs
strand	hg/inc/ggMrnaAli.h	/^    char strand[3];             \/* + or -, should always be plus for chromsome *\/$/;"	m	struct:ggMrnaInput
strand	hg/inc/ggMrnaAli.h	/^    char strand[4];	\/* + or - depending on which strand alignment is to  *\/$/;"	m	struct:ggMrnaAli
strand	hg/inc/ggPrivate.h	/^    short strand;                \/* Strand this is on. *\/$/;"	m	struct:clonePair
strand	hg/inc/glDbRep.h	/^    char strand[2];	\/* + or - for strand *\/$/;"	m	struct:gl
strand	hg/inc/gv.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:gvPos
strand	hg/inc/hapmapAlleleFreq.h	/^    char strand[2];	\/* Strand *\/$/;"	m	struct:hapmapAlleleFreq
strand	hg/inc/hapmapAlleles.h	/^    char strand[2];	\/* Which genomic strand contains the observed alleles *\/$/;"	m	struct:hapmapAlleles
strand	hg/inc/hapmapAllelesCombined.h	/^    char strand[2];	\/* Which genomic strand contains the observed alleles *\/$/;"	m	struct:hapmapAllelesCombined
strand	hg/inc/hapmapAllelesOrtho.h	/^    char strand[2];	\/* Which genomic strand contains the observed alleles *\/$/;"	m	struct:hapmapAllelesOrtho
strand	hg/inc/hapmapAllelesSummary.h	/^    char strand[2];	\/* Which genomic strand contains the observed alleles *\/$/;"	m	struct:hapmapAllelesSummary
strand	hg/inc/hapmapPrimateAlleles.h	/^    char strand;	\/* + or - *\/$/;"	m	struct:hapmapPrimateAlleles
strand	hg/inc/hapmapSnps.h	/^    char strand[2];	\/* Which genomic strand contains the observed alleles *\/$/;"	m	struct:hapmapSnps
strand	hg/inc/hapmapSnpsCombined.h	/^    char strand[2];	\/* Which genomic strand contains the observed alleles *\/$/;"	m	struct:hapmapSnpsCombined
strand	hg/inc/humanParalog.h	/^    char *strand;	\/* Strand on Human *\/$/;"	m	struct:humanParalog
strand	hg/inc/jaxQTL.h	/^    char strand[2];	\/* + or - (bed6 compat.) *\/$/;"	m	struct:jaxQTL
strand	hg/inc/jaxQTL2.h	/^    char strand[2];	\/* + or - (bed6 compat.) *\/$/;"	m	struct:jaxQTL2
strand	hg/inc/jaxQTL3.h	/^    char strand[2];	\/* + or - (bed6 compat.) *\/$/;"	m	struct:jaxQTL3
strand	hg/inc/jgiGene.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:jgiGene
strand	hg/inc/lfs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:lfs
strand	hg/inc/liftUp.h	/^    char strand;                \/* Strand of contig relative to chromosome. *\/$/;"	m	struct:liftSpec
strand	hg/inc/lowelabPfamHit.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:lowelabPfamHits
strand	hg/inc/mafFrames.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:mafFrames
strand	hg/inc/makeItemsItem.h	/^    char strand[2];	\/* + or - for strand *\/$/;"	m	struct:makeItemsItem
strand	hg/inc/mammalPsg.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:mammalPsg
strand	hg/inc/megablastInfo.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:megablastInfo
strand	hg/inc/mouseOrtho.h	/^    char *strand;	\/* Strand on Human *\/$/;"	m	struct:mouseOrtho
strand	hg/inc/mouseSynWhd.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:mouseSynWhd
strand	hg/inc/ncRna.h	/^    char strand[2];	\/* + or - for strand *\/$/;"	m	struct:ncRna
strand	hg/inc/netAlign.h	/^    char strand[2];	\/* Orientation of query. + or - *\/$/;"	m	struct:netAlign
strand	hg/inc/omicia.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:omiciaAuto
strand	hg/inc/omicia.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:omiciaHand
strand	hg/inc/oreganno.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:oreganno
strand	hg/inc/oregannoOther.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:oregannoOther
strand	hg/inc/orthoAlleles.h	/^    char strand;	\/* + or - *\/$/;"	m	struct:orthoAlleles
strand	hg/inc/pairedTagAlign.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:pairedTagAlign
strand	hg/inc/peptideMapping.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:peptideMapping
strand	hg/inc/plasEndPairs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:plasEndPairs
strand	hg/inc/protVar.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:protVarPos
strand	hg/inc/pscreen.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:pscreen
strand	hg/inc/pseudoGeneLink.h	/^    char strand[3];	\/* + or - *\/$/;"	m	struct:pseudoGeneLink
strand	hg/inc/pslWQueryID.h	/^    char strand[3];	\/* + or - for query strand. For mouse second +\/- for genomic strand *\/$/;"	m	struct:pslWQueryID
strand	hg/inc/pslWScore.h	/^    char strand[3];	\/* + or - for query strand. For mouse second +\/- for genomic strand *\/$/;"	m	struct:pslWScore
strand	hg/inc/putaInfo.h	/^    char *strand;	\/* stamp's strand *\/$/;"	m	struct:putaInfo
strand	hg/inc/retroMrnaInfo.h	/^    char strand[3];	\/* + or - *\/$/;"	m	struct:retroMrnaInfo
strand	hg/inc/rikenCluster.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:rikenUcscCluster
strand	hg/inc/rmskOut.h	/^    char strand[2];	\/* Relative orientation + or - *\/$/;"	m	struct:rmskOut
strand	hg/inc/rnaGene.h	/^    char strand[2];	\/* Strand: + or - *\/$/;"	m	struct:rnaGene
strand	hg/inc/rnaGenes.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:rnaGenes
strand	hg/inc/rnaGroup.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:rnaGroup
strand	hg/inc/rnaHybridization.h	/^    char strand[2];	\/* strand for pattern region *\/$/;"	m	struct:rnaHybridization
strand	hg/inc/rnaSecStr.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:rnaSecStr
strand	hg/inc/roughAli.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:roughAli
strand	hg/inc/sample.h	/^    char strand[3];	\/* # + or - *\/$/;"	m	struct:sample
strand	hg/inc/sangerGene.h	/^    char strand[2];	\/* + or - for strand *\/$/;"	m	struct:sangerGene
strand	hg/inc/sgdOther.h	/^    char strand[2];	\/* Strand: +, - or . *\/$/;"	m	struct:sgdOther
strand	hg/inc/snoRNAs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:snoRNAs
strand	hg/inc/snp.h	/^    char strand[2];	\/* Which DNA strand contains the observed alleles *\/$/;"	m	struct:snp
strand	hg/inc/snp125.h	/^    char *strand;	\/* Which DNA strand contains the observed alleles *\/$/;"	m	struct:snp125
strand	hg/inc/snp125.h	/^    char *strand;	\/* Which DNA strand contains the observed alleles *\/$/;"	m	struct:snp125Extended
strand	hg/inc/snp132Ext.h	/^    char *strand;	\/* Which DNA strand contains the observed alleles *\/$/;"	m	struct:snp132Ext
strand	hg/inc/snpTmp.h	/^    char strand[2];	\/* Which DNA strand contains the observed alleles *\/$/;"	m	struct:snpTmp
strand	hg/inc/switchDbTss.h	/^    char strand[2];	\/* Strand *\/$/;"	m	struct:switchDbTss
strand	hg/inc/synteny100000.h	/^    char strand[2];	\/* + direction matches - opposite *\/$/;"	m	struct:synteny100000
strand	hg/inc/syntenyBerk.h	/^    char strand[2];	\/* + direction matches - opposite *\/$/;"	m	struct:syntenyBerk
strand	hg/inc/syntenySanger.h	/^    char strand[2];	\/* + direction matches - opposite *\/$/;"	m	struct:syntenySanger
strand	hg/inc/tRNAs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:tRNAs
strand	hg/inc/tagAlign.h	/^    char strand;	\/* Orientation of this read (+ or -) *\/$/;"	m	struct:tagAlign
strand	hg/inc/tfbsCons.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:tfbsCons
strand	hg/inc/tfbsConsSites.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:tfbsConsSites
strand	hg/inc/tigrCmrGene.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:tigrCmrGene
strand	hg/inc/transMapSrc.h	/^    char strand;	\/* strand *\/$/;"	m	struct:transMapSrc
strand	hg/inc/txCluster.h	/^    char strand[2];	\/* Strand - either plus or minus *\/$/;"	m	struct:txCluster
strand	hg/inc/txEdgeBed.h	/^    char strand[2];	\/* Strand - either plus or minus *\/$/;"	m	struct:txEdgeBed
strand	hg/inc/txEdgeOrtho.h	/^    char strand[2];	\/* Strand - either plus or minus *\/$/;"	m	struct:txEdgeOrtho
strand	hg/inc/txGraph.h	/^    char strand[3];	\/* + or - strand. *\/$/;"	m	struct:txGraph
strand	hg/inc/ucscRetroInfo.h	/^    char strand[3];	\/* + or - *\/$/;"	m	struct:ucscRetroInfo
strand	hg/inc/variome.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:variome
strand	hg/inc/wabAli.h	/^    char strand[2];	\/* + or - relative orientation. *\/$/;"	m	struct:wabAli
strand	hg/inc/wgRna.h	/^    char strand[2];	\/* + or - (bed6 compat.) *\/$/;"	m	struct:wgRna
strand	hg/inc/wikiTrack.h	/^    char strand[2];	\/* + or - *\/$/;"	m	struct:wikiTrack
strand	hg/inc/zdobnovSynt.h	/^    char strand[2];	\/* placeholder *\/$/;"	m	struct:zdobnovSynt
strand	hg/lib/lowelabPfamHit.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:lowelabPfamHits
strand	hg/lib/mafGene.c	/^    char strand;$/;"	m	struct:exonInfo	file:
strand	hg/lib/mafGene.c	/^    char strand;$/;"	m	struct:speciesInfo	file:
strand	hg/lib/snoRNAs.h	/^    char strand[2];	\/* Value should be + or - *\/$/;"	m	struct:snoRNAs
strand	inc/basicBed.h	/^    char strand[2];  \/* + or -.  *\/$/;"	m	struct:bed
strand	inc/cda.h	/^    char strand;                    \/* Strand of chromosome cDNA aligns with + or - *\/$/;"	m	struct:cdaAli
strand	inc/crudeali.h	/^    char strand;$/;"	m	struct:crudeAli
strand	inc/gdf.h	/^    char strand;$/;"	m	struct:gdfGene
strand	inc/gfPcrLib.h	/^    char strand;	\/* Strand of amplified sequence. *\/$/;"	m	struct:gfPcrOutput
strand	inc/gff.h	/^    char strand;    \/* Strand of sequence feature is on. + or - or .*\/$/;"	m	struct:gffLine
strand	inc/gff.h	/^    char strand;    \/* Strand of sequence. *\/$/;"	m	struct:gffGroup
strand	inc/gff3.h	/^    char *strand; \/* The strand of the feature.  '+' for positive strand$/;"	m	struct:gff3Ann
strand	inc/maf.h	/^    char strand; \/* Strand of sequence.  Either + or -*\/$/;"	m	struct:mafComp
strand	inc/oldGff.h	/^    char strand;	\/* + or - *\/$/;"	m	struct:gffGene
strand	inc/psl.h	/^    char strand[3];	\/* + or - for strand *\/$/;"	m	struct:psl
strand	inc/repMask.h	/^    char strand[2];	\/* Query strand (+ or C) *\/$/;"	m	struct:repeatMaskOut
strand	inc/seg.h	/^	char strand;	\/* Strand of segment. Either + or -. *\/$/;"	m	struct:segComp
strand	inc/splatAli.h	/^    char strand[2];	\/* + or - for strand *\/$/;"	m	struct:splatAli
strand	inc/xAli.h	/^    char strand[3];	\/* + or - for strand. First character query, second target (optional) *\/$/;"	m	struct:xAli
strand	lib/oldGff.c	/^    char strand[4];	\/* + or - *\/$/;"	m	struct:gffSegLine	file:
strandA	hg/inc/synMap.h	/^    char *strandA;	\/* Strand information can be things like '-+' *\/$/;"	m	struct:synMap
strandField	hg/inc/hdb.h	/^    char strandField[HDB_MAX_FIELD_STRING];	\/* Name of strand field. *\/$/;"	m	struct:hTableInfo
strandFilter	hg/inc/bed.h	/^    enum charFilterType strandFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::charFilterType
strandInvert	hg/inc/bed.h	/^    boolean strandInvert;$/;"	m	struct:bedFilter
strandSP6	hg/inc/genMapDb.h	/^    char strandSP6[2];	\/* + or - *\/$/;"	m	struct:genMapDb
strandT7	hg/inc/genMapDb.h	/^    char strandT7[2];	\/* + or - *\/$/;"	m	struct:genMapDb
strandTarget	hg/inc/rnaHybridization.h	/^    char strandTarget[2];	\/* strand for target region *\/$/;"	m	struct:rnaHybridization
strandVals	hg/inc/bed.h	/^    char *strandVals;$/;"	m	struct:bedFilter
strands	hg/inc/mrnaMisMatch.h	/^    char *strands;	\/* strand of each misMatch *\/$/;"	m	struct:mrnaMisMatch
strangeSplice	hg/inc/txInfo.h	/^    int strangeSplice;	\/* Count of splice sites not gt\/ag, gc\/ag, or at\/ac *\/$/;"	m	struct:txInfo
streamer	hg/lib/annoStreamDb.c	/^    struct annoStreamer streamer;	\/\/ Parent class members & methods$/;"	m	struct:annoStreamDb	typeref:struct:annoStreamDb::annoStreamer	file:
streamer	hg/lib/annoStreamWig.c	/^    struct annoStreamer streamer;	\/\/ Parent class members & methods \/ external interface$/;"	m	struct:annoStreamWig	typeref:struct:annoStreamWig::annoStreamer	file:
streamer	inc/annoGrator.h	/^    struct annoStreamer streamer;	\/\/ external annoStreamer interface$/;"	m	struct:annoGrator	typeref:struct:annoGrator::annoStreamer
streamer	lib/annoStreamVcf.c	/^    struct annoStreamer streamer;	\/\/ Parent class members & methods$/;"	m	struct:annoStreamVcf	typeref:struct:annoStreamVcf::annoStreamer	file:
string	inc/dystring.h	/^    char *string;		\/* Current buffer. *\/$/;"	m	struct:dyString
string	inc/kxTok.h	/^    char string[1];  \/* Allocated at run time *\/$/;"	m	struct:kxTok
string	inc/tokenizer.h	/^    char *string;        \/* String value of token *\/$/;"	m	struct:tokenizer
stringArrayIx	lib/common.c	/^int stringArrayIx(char *string, char *array[], int arraySize)$/;"	f
stringBetween	lib/common.c	/^char *stringBetween(char *start, char *end, char *haystack)$/;"	f
stringFieldInSubmissionSet	hg/lib/genePix.c	/^static char *stringFieldInSubmissionSet(struct sqlConnection *conn, int id, $/;"	f	file:
stringFieldInSubmissionSet	hg/lib/visiGene.c	/^static char *stringFieldInSubmissionSet(struct sqlConnection *conn, int id, $/;"	f	file:
stringFieldInSubmissionSource	hg/lib/visiGene.c	/^static char *stringFieldInSubmissionSource(struct sqlConnection *conn, int id, $/;"	f	file:
stringFilterType	hg/inc/bed.h	/^enum stringFilterType$/;"	g
stringIn	inc/common.h	766;"	d
stringIx	inc/common.h	1008;"	d
stringPair	hg/lib/ensFace.c	/^struct stringPair$/;"	s	file:
stringSize	inc/dystring.h	/^    int stringSize;		\/* Size of string. *\/$/;"	m	struct:dyString
stringToSlNames	lib/obscure.c	/^struct slName *stringToSlNames(char *string)$/;"	f
stringy	inc/asParse.h	/^    bool stringy;                  \/* True if a string or blob. *\/$/;"	m	struct:asTypeInfo
stripChar	lib/common.c	/^void stripChar(char *s, char c)$/;"	f
stripCommas	lib/obscure.c	/^char *stripCommas(char *position)$/;"	f
stripEditURLs	hg/lib/wikiTrack.c	/^static char *stripEditURLs(char *rendered)$/;"	f	file:
stripEnclosingChar	lib/common.c	/^char *stripEnclosingChar(char *inout,char encloser)$/;"	f
stripEnclosingDoubleQuotes	inc/common.h	856;"	d
stripEnclosingSingleQuotes	inc/common.h	857;"	d
stripJavascript	hg/lib/customFactory.c	/^static void stripJavascript(char **pString)$/;"	f	file:
stripRegEx	hg/lib/jsHelper.c	/^char *stripRegEx(char *str, char *regEx, int flags)$/;"	f
stripString	lib/common.c	/^void stripString(char *s, char *strip)$/;"	f
strstrNoCase	lib/common.c	/^char *strstrNoCase(char *haystack, char *needle)$/;"	f
strtoll	lib/options.c	18;"	d	file:
structType	hg/inc/lsSnpPdb.h	/^    enum lsSnpPdbStructType structType;	\/* type of structure *\/$/;"	m	struct:lsSnpPdb	typeref:enum:lsSnpPdb::lsSnpPdbStructType
stsAlias	hg/inc/stsAlias.h	/^struct stsAlias$/;"	s
stsAliasCommaIn	hg/lib/stsAlias.c	/^struct stsAlias *stsAliasCommaIn(char **pS, struct stsAlias *ret)$/;"	f
stsAliasCommaOut	hg/inc/stsAlias.h	47;"	d
stsAliasFree	hg/lib/stsAlias.c	/^void stsAliasFree(struct stsAlias **pEl)$/;"	f
stsAliasFreeList	hg/lib/stsAlias.c	/^void stsAliasFreeList(struct stsAlias **pList)$/;"	f
stsAliasLoad	hg/lib/stsAlias.c	/^struct stsAlias *stsAliasLoad(char **row)$/;"	f
stsAliasLoadAll	hg/lib/stsAlias.c	/^struct stsAlias *stsAliasLoadAll(char *fileName) $/;"	f
stsAliasOutput	hg/lib/stsAlias.c	/^void stsAliasOutput(struct stsAlias *el, FILE *f, char sep, char lastSep) $/;"	f
stsAliasStaticLoad	hg/lib/stsAlias.c	/^void stsAliasStaticLoad(char **row, struct stsAlias *ret)$/;"	f
stsAliasTabOut	hg/inc/stsAlias.h	44;"	d
stsCount	hg/inc/fishClones.h	/^    unsigned stsCount;	\/* Number of STS markers associated with this clone *\/$/;"	m	struct:fishClones
stsEnd	hg/inc/genMapDb.h	/^    unsigned stsEnd;	\/* End position in chrom for STS marker *\/$/;"	m	struct:genMapDb
stsInfo	hg/inc/stsInfo.h	/^struct stsInfo$/;"	s
stsInfo2	hg/inc/stsInfo2.h	/^struct stsInfo2$/;"	s
stsInfo2CommaIn	hg/lib/stsInfo2.c	/^struct stsInfo2 *stsInfo2CommaIn(char **pS, struct stsInfo2 *ret)$/;"	f
stsInfo2CommaOut	hg/inc/stsInfo2.h	97;"	d
stsInfo2Free	hg/lib/stsInfo2.c	/^void stsInfo2Free(struct stsInfo2 **pEl)$/;"	f
stsInfo2FreeList	hg/lib/stsInfo2.c	/^void stsInfo2FreeList(struct stsInfo2 **pList)$/;"	f
stsInfo2Load	hg/lib/stsInfo2.c	/^struct stsInfo2 *stsInfo2Load(char **row)$/;"	f
stsInfo2LoadAll	hg/lib/stsInfo2.c	/^struct stsInfo2 *stsInfo2LoadAll(char *fileName) $/;"	f
stsInfo2LoadWhere	hg/lib/stsInfo2.c	/^struct stsInfo2 *stsInfo2LoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
stsInfo2Output	hg/lib/stsInfo2.c	/^void stsInfo2Output(struct stsInfo2 *el, FILE *f, char sep, char lastSep) $/;"	f
stsInfo2TabOut	hg/inc/stsInfo2.h	94;"	d
stsInfoCommaIn	hg/lib/stsInfo.c	/^struct stsInfo *stsInfoCommaIn(char **pS, struct stsInfo *ret)$/;"	f
stsInfoCommaOut	hg/inc/stsInfo.h	88;"	d
stsInfoFree	hg/lib/stsInfo.c	/^void stsInfoFree(struct stsInfo **pEl)$/;"	f
stsInfoFreeList	hg/lib/stsInfo.c	/^void stsInfoFreeList(struct stsInfo **pList)$/;"	f
stsInfoLoad	hg/lib/stsInfo.c	/^struct stsInfo *stsInfoLoad(char **row)$/;"	f
stsInfoLoadAll	hg/lib/stsInfo.c	/^struct stsInfo *stsInfoLoadAll(char *fileName) $/;"	f
stsInfoMouse	hg/inc/stsInfoMouse.h	/^struct stsInfoMouse$/;"	s
stsInfoMouseCommaIn	hg/lib/stsInfoMouse.c	/^struct stsInfoMouse *stsInfoMouseCommaIn(char **pS, struct stsInfoMouse *ret)$/;"	f
stsInfoMouseCommaOut	hg/inc/stsInfoMouse.h	64;"	d
stsInfoMouseFree	hg/lib/stsInfoMouse.c	/^void stsInfoMouseFree(struct stsInfoMouse **pEl)$/;"	f
stsInfoMouseFreeList	hg/lib/stsInfoMouse.c	/^void stsInfoMouseFreeList(struct stsInfoMouse **pList)$/;"	f
stsInfoMouseLoad	hg/lib/stsInfoMouse.c	/^struct stsInfoMouse *stsInfoMouseLoad(char **row)$/;"	f
stsInfoMouseLoadAll	hg/lib/stsInfoMouse.c	/^struct stsInfoMouse *stsInfoMouseLoadAll(char *fileName) $/;"	f
stsInfoMouseLoadWhere	hg/lib/stsInfoMouse.c	/^struct stsInfoMouse *stsInfoMouseLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
stsInfoMouseNew	hg/inc/stsInfoMouseNew.h	/^struct stsInfoMouseNew$/;"	s
stsInfoMouseNewCommaIn	hg/lib/stsInfoMouseNew.c	/^struct stsInfoMouseNew *stsInfoMouseNewCommaIn(char **pS, struct stsInfoMouseNew *ret)$/;"	f
stsInfoMouseNewCommaOut	hg/inc/stsInfoMouseNew.h	79;"	d
stsInfoMouseNewFree	hg/lib/stsInfoMouseNew.c	/^void stsInfoMouseNewFree(struct stsInfoMouseNew **pEl)$/;"	f
stsInfoMouseNewFreeList	hg/lib/stsInfoMouseNew.c	/^void stsInfoMouseNewFreeList(struct stsInfoMouseNew **pList)$/;"	f
stsInfoMouseNewLoad	hg/lib/stsInfoMouseNew.c	/^struct stsInfoMouseNew *stsInfoMouseNewLoad(char **row)$/;"	f
stsInfoMouseNewLoadAll	hg/lib/stsInfoMouseNew.c	/^struct stsInfoMouseNew *stsInfoMouseNewLoadAll(char *fileName) $/;"	f
stsInfoMouseNewLoadAllByChar	hg/lib/stsInfoMouseNew.c	/^struct stsInfoMouseNew *stsInfoMouseNewLoadAllByChar(char *fileName, char chopper) $/;"	f
stsInfoMouseNewLoadAllByTab	hg/inc/stsInfoMouseNew.h	57;"	d
stsInfoMouseNewOutput	hg/lib/stsInfoMouseNew.c	/^void stsInfoMouseNewOutput(struct stsInfoMouseNew *el, FILE *f, char sep, char lastSep) $/;"	f
stsInfoMouseNewStaticLoad	hg/lib/stsInfoMouseNew.c	/^void stsInfoMouseNewStaticLoad(char **row, struct stsInfoMouseNew *ret)$/;"	f
stsInfoMouseNewTabOut	hg/inc/stsInfoMouseNew.h	76;"	d
stsInfoMouseOutput	hg/lib/stsInfoMouse.c	/^void stsInfoMouseOutput(struct stsInfoMouse *el, FILE *f, char sep, char lastSep) $/;"	f
stsInfoMouseStaticLoad	hg/lib/stsInfoMouse.c	/^void stsInfoMouseStaticLoad(char **row, struct stsInfoMouse *ret)$/;"	f
stsInfoMouseTabOut	hg/inc/stsInfoMouse.h	61;"	d
stsInfoOutput	hg/lib/stsInfo.c	/^void stsInfoOutput(struct stsInfo *el, FILE *f, char sep, char lastSep) $/;"	f
stsInfoRat	hg/inc/stsInfoRat.h	/^struct stsInfoRat$/;"	s
stsInfoRatCommaIn	hg/lib/stsInfoRat.c	/^struct stsInfoRat *stsInfoRatCommaIn(char **pS, struct stsInfoRat *ret)$/;"	f
stsInfoRatCommaOut	hg/inc/stsInfoRat.h	69;"	d
stsInfoRatFree	hg/lib/stsInfoRat.c	/^void stsInfoRatFree(struct stsInfoRat **pEl)$/;"	f
stsInfoRatFreeList	hg/lib/stsInfoRat.c	/^void stsInfoRatFreeList(struct stsInfoRat **pList)$/;"	f
stsInfoRatLoad	hg/lib/stsInfoRat.c	/^struct stsInfoRat *stsInfoRatLoad(char **row)$/;"	f
stsInfoRatLoadAll	hg/lib/stsInfoRat.c	/^struct stsInfoRat *stsInfoRatLoadAll(char *fileName) $/;"	f
stsInfoRatOutput	hg/lib/stsInfoRat.c	/^void stsInfoRatOutput(struct stsInfoRat *el, FILE *f, char sep, char lastSep) $/;"	f
stsInfoRatStaticLoad	hg/lib/stsInfoRat.c	/^void stsInfoRatStaticLoad(char **row, struct stsInfoRat *ret)$/;"	f
stsInfoRatTabOut	hg/inc/stsInfoRat.h	66;"	d
stsInfoTabOut	hg/inc/stsInfo.h	85;"	d
stsMap	hg/inc/stsMap.h	/^struct stsMap$/;"	s
stsMapCommaIn	hg/lib/stsMap.c	/^struct stsMap *stsMapCommaIn(char **pS, struct stsMap *ret)$/;"	f
stsMapCommaOut	hg/inc/stsMap.h	82;"	d
stsMapFree	hg/lib/stsMap.c	/^void stsMapFree(struct stsMap **pEl)$/;"	f
stsMapFreeList	hg/lib/stsMap.c	/^void stsMapFreeList(struct stsMap **pList)$/;"	f
stsMapFromStsMarker	hg/lib/stsMap.c	/^void stsMapFromStsMarker(struct stsMarker *oldEl, struct stsMap *el)$/;"	f
stsMapLoad	hg/lib/stsMap.c	/^struct stsMap *stsMapLoad(char **row)$/;"	f
stsMapLoad28	hg/lib/stsMap.c	/^struct stsMap *stsMapLoad28(char **row)$/;"	f
stsMapLoadAll	hg/lib/stsMap.c	/^struct stsMap *stsMapLoadAll(char *fileName) $/;"	f
stsMapMouse	hg/inc/stsMapMouse.h	/^struct stsMapMouse$/;"	s
stsMapMouseCommaIn	hg/lib/stsMapMouse.c	/^struct stsMapMouse *stsMapMouseCommaIn(char **pS, struct stsMapMouse *ret)$/;"	f
stsMapMouseCommaOut	hg/inc/stsMapMouse.h	57;"	d
stsMapMouseFree	hg/lib/stsMapMouse.c	/^void stsMapMouseFree(struct stsMapMouse **pEl)$/;"	f
stsMapMouseFreeList	hg/lib/stsMapMouse.c	/^void stsMapMouseFreeList(struct stsMapMouse **pList)$/;"	f
stsMapMouseLoad	hg/lib/stsMapMouse.c	/^struct stsMapMouse *stsMapMouseLoad(char **row)$/;"	f
stsMapMouseLoadAll	hg/lib/stsMapMouse.c	/^struct stsMapMouse *stsMapMouseLoadAll(char *fileName) $/;"	f
stsMapMouseLoadWhere	hg/lib/stsMapMouse.c	/^struct stsMapMouse *stsMapMouseLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
stsMapMouseNew	hg/inc/stsMapMouseNew.h	/^struct stsMapMouseNew$/;"	s
stsMapMouseNewCommaIn	hg/lib/stsMapMouseNew.c	/^struct stsMapMouseNew *stsMapMouseNewCommaIn(char **pS, struct stsMapMouseNew *ret)$/;"	f
stsMapMouseNewCommaOut	hg/inc/stsMapMouseNew.h	69;"	d
stsMapMouseNewFree	hg/lib/stsMapMouseNew.c	/^void stsMapMouseNewFree(struct stsMapMouseNew **pEl)$/;"	f
stsMapMouseNewFreeList	hg/lib/stsMapMouseNew.c	/^void stsMapMouseNewFreeList(struct stsMapMouseNew **pList)$/;"	f
stsMapMouseNewLoad	hg/lib/stsMapMouseNew.c	/^struct stsMapMouseNew *stsMapMouseNewLoad(char **row)$/;"	f
stsMapMouseNewLoadAll	hg/lib/stsMapMouseNew.c	/^struct stsMapMouseNew *stsMapMouseNewLoadAll(char *fileName) $/;"	f
stsMapMouseNewLoadAllByChar	hg/lib/stsMapMouseNew.c	/^struct stsMapMouseNew *stsMapMouseNewLoadAllByChar(char *fileName, char chopper) $/;"	f
stsMapMouseNewLoadAllByTab	hg/inc/stsMapMouseNew.h	47;"	d
stsMapMouseNewOutput	hg/lib/stsMapMouseNew.c	/^void stsMapMouseNewOutput(struct stsMapMouseNew *el, FILE *f, char sep, char lastSep) $/;"	f
stsMapMouseNewStaticLoad	hg/lib/stsMapMouseNew.c	/^void stsMapMouseNewStaticLoad(char **row, struct stsMapMouseNew *ret)$/;"	f
stsMapMouseNewTabOut	hg/inc/stsMapMouseNew.h	66;"	d
stsMapMouseOptEnum	hg/inc/hui.h	/^enum stsMapMouseOptEnum {$/;"	g
stsMapMouseOptions	hg/lib/hui.c	/^static char *stsMapMouseOptions[] = {$/;"	v	file:
stsMapMouseOutput	hg/lib/stsMapMouse.c	/^void stsMapMouseOutput(struct stsMapMouse *el, FILE *f, char sep, char lastSep) $/;"	f
stsMapMouseStaticLoad	hg/lib/stsMapMouse.c	/^void stsMapMouseStaticLoad(char **row, struct stsMapMouse *ret)$/;"	f
stsMapMouseTabOut	hg/inc/stsMapMouse.h	54;"	d
stsMapOptEnum	hg/inc/hui.h	/^enum stsMapOptEnum {$/;"	g
stsMapOptions	hg/lib/hui.c	/^static char *stsMapOptions[] = {$/;"	v	file:
stsMapOutput	hg/lib/stsMap.c	/^void stsMapOutput(struct stsMap *el, FILE *f, char sep, char lastSep) $/;"	f
stsMapRat	hg/inc/stsMapRat.h	/^struct stsMapRat$/;"	s
stsMapRatCommaIn	hg/lib/stsMapRat.c	/^struct stsMapRat *stsMapRatCommaIn(char **pS, struct stsMapRat *ret)$/;"	f
stsMapRatCommaOut	hg/inc/stsMapRat.h	59;"	d
stsMapRatFree	hg/lib/stsMapRat.c	/^void stsMapRatFree(struct stsMapRat **pEl)$/;"	f
stsMapRatFreeList	hg/lib/stsMapRat.c	/^void stsMapRatFreeList(struct stsMapRat **pList)$/;"	f
stsMapRatLoad	hg/lib/stsMapRat.c	/^struct stsMapRat *stsMapRatLoad(char **row)$/;"	f
stsMapRatLoadAll	hg/lib/stsMapRat.c	/^struct stsMapRat *stsMapRatLoadAll(char *fileName) $/;"	f
stsMapRatOptEnum	hg/inc/hui.h	/^enum stsMapRatOptEnum {$/;"	g
stsMapRatOptions	hg/lib/hui.c	/^static char *stsMapRatOptions[] = {$/;"	v	file:
stsMapRatOutput	hg/lib/stsMapRat.c	/^void stsMapRatOutput(struct stsMapRat *el, FILE *f, char sep, char lastSep) $/;"	f
stsMapRatStaticLoad	hg/lib/stsMapRat.c	/^void stsMapRatStaticLoad(char **row, struct stsMapRat *ret)$/;"	f
stsMapRatTabOut	hg/inc/stsMapRat.h	56;"	d
stsMapStaticLoad	hg/lib/stsMap.c	/^void stsMapStaticLoad(char **row, struct stsMap *ret)$/;"	f
stsMapStaticLoad28	hg/lib/stsMap.c	/^void stsMapStaticLoad28(char **row, struct stsMap *ret)$/;"	f
stsMapTabOut	hg/inc/stsMap.h	79;"	d
stsMarker	hg/inc/genMapDb.h	/^    char *stsMarker;	\/* Name of STS marker found in clone *\/$/;"	m	struct:genMapDb
stsMarker	hg/inc/stsMarker.h	/^struct stsMarker$/;"	s
stsMarkerCommaIn	hg/lib/stsMarker.c	/^struct stsMarker *stsMarkerCommaIn(char **pS, struct stsMarker *ret)$/;"	f
stsMarkerCommaOut	hg/inc/stsMarker.h	63;"	d
stsMarkerFree	hg/lib/stsMarker.c	/^void stsMarkerFree(struct stsMarker **pEl)$/;"	f
stsMarkerFreeList	hg/lib/stsMarker.c	/^void stsMarkerFreeList(struct stsMarker **pList)$/;"	f
stsMarkerLoad	hg/lib/stsMarker.c	/^struct stsMarker *stsMarkerLoad(char **row)$/;"	f
stsMarkerName	hg/inc/stsInfoMouse.h	/^    char *stsMarkerName;	\/* Name of sts Marker. *\/$/;"	m	struct:stsInfoMouse
stsMarkerOutput	hg/lib/stsMarker.c	/^void stsMarkerOutput(struct stsMarker *el, FILE *f, char sep, char lastSep) $/;"	f
stsMarkerStaticLoad	hg/lib/stsMarker.c	/^void stsMarkerStaticLoad(char **row, struct stsMarker *ret)$/;"	f
stsMarkerSymbol	hg/inc/stsInfoMouse.h	/^    char *stsMarkerSymbol;	\/* symbol of  STS marker *\/$/;"	m	struct:stsInfoMouse
stsMarkerTabOut	hg/inc/stsMarker.h	60;"	d
stsNames	hg/inc/fishClones.h	/^    char **stsNames;	\/* Names of STS  markers *\/$/;"	m	struct:fishClones
stsStart	hg/inc/genMapDb.h	/^    unsigned stsStart;	\/* Start position in chrom for STS marker *\/$/;"	m	struct:genMapDb
styleFollows	hg/inc/hui.h	/^    boolean styleFollows;     \/\/ style settings can follow like value|label[background-color:#660000]$/;"	m	struct:_filterBy
sub	hg/inc/soterm.h	/^	} sub;$/;"	m	struct:soCall	typeref:union:soCall::__anon12
subChar	inc/common.h	847;"	d
subMatch	lib/wildcmp.c	/^static int subMatch(const char *str, const char *wild, char single, char multi)$/;"	f	file:
subTdbFind	hg/lib/trackDbCustom.c	/^struct trackDb *subTdbFind(struct trackDb *parent,char *childName)$/;"	f
subText	inc/subText.h	/^struct subText$/;"	s
subTextFree	lib/subText.c	/^void subTextFree(struct subText **pSub)$/;"	f
subTextFreeList	lib/subText.c	/^void subTextFreeList(struct subText **pList)$/;"	f
subTextNew	lib/subText.c	/^struct subText *subTextNew(char *in, char *out)$/;"	f
subTextSizeAfter	lib/subText.c	/^int subTextSizeAfter(struct subText *subList, char *in)$/;"	f
subTextStatic	lib/subText.c	/^void subTextStatic(struct subText *subList, char *in, char *out, int outMaxSize)$/;"	f
subTextString	lib/subText.c	/^char *subTextString(struct subText *subList, char *in)$/;"	f
subThroughHash	hg/lib/joiner.c	/^static char *subThroughHash(struct lineFile *lf,$/;"	f	file:
subgroup	hg/lib/hui.c	/^    char* subgroup;$/;"	m	struct:_hierarchy	file:
subgroupCount	hg/lib/hui.c	/^int subgroupCount(struct trackDb *parentTdb)$/;"	f
subgroupFind	hg/lib/hui.c	/^boolean subgroupFind(struct trackDb *childTdb, char *name,char **value)$/;"	f
subgroupFindTitle	hg/lib/hui.c	/^boolean subgroupFindTitle(struct trackDb *parentTdb, char *name,char **value)$/;"	f
subgroupFree	hg/lib/hui.c	/^void subgroupFree(char **value)$/;"	f
subgroupMembersFree	hg/lib/hui.c	/^static void subgroupMembersFree(members_t **members)$/;"	f	file:
subgroupMembersGet	hg/lib/hui.c	/^static members_t *subgroupMembersGet(struct trackDb *parentTdb, char *groupNameOrTag)$/;"	f	file:
subgroupMembersWeedOutEmpties	hg/lib/hui.c	/^static members_t *subgroupMembersWeedOutEmpties(struct trackDb *parentTdb, members_t *members, struct cart *cart)$/;"	f	file:
subgroupMembershipGet	hg/lib/hui.c	/^static membership_t *subgroupMembershipGet(struct trackDb *childTdb)$/;"	f	file:
subgroupSettingByTagOrName	hg/lib/hui.c	/^char * subgroupSettingByTagOrName(struct trackDb *parentTdb, char *groupNameOrTag)$/;"	f
subgroupingExists	hg/lib/hui.c	/^boolean subgroupingExists(struct trackDb *parentTdb, char *groupNameOrTag)$/;"	f
subgroups	hg/lib/hui.c	/^    char **subgroups;    \/\/ Ary of Tags in parentTdb->subGroupN and in childTdb->subGroups (ie view)$/;"	m	struct:_membership	file:
subgroups	hg/lib/hui.c	/^    char**subgroups;$/;"	m	struct:_dimensions	file:
subgroups	hg/lib/hui.c	/^    char**subgroups;$/;"	m	struct:_dividers	file:
submissionSetPart	hg/lib/bioImage.c	/^static char *submissionSetPart(struct sqlConnection *conn, int id, char *field)$/;"	f	file:
submitLength	inc/unfin.h	/^    int submitLength;  \/* Number of bases in submission. *\/$/;"	m	struct:contigTree
submitOffset	inc/hgap.h	/^    int submitOffset;         \/* Position in genBank submission. *\/$/;"	m	struct:hgContig
submitOffset	inc/unfin.h	/^    int submitOffset;  \/* Offset relative to parent in genBank submission. *\/$/;"	m	struct:contigTree
submitterCount	hg/inc/snp132Ext.h	/^    int submitterCount;	\/* Number of distinct submitter handles for submitted SNPs for this ref SNP *\/$/;"	m	struct:snp132Ext
submitters	hg/inc/snp132Ext.h	/^    char **submitters;	\/* List of submitter handles *\/$/;"	m	struct:snp132Ext
subsetSettings	hg/inc/microarray.h	/^    struct maGrouping *subsetSettings;$/;"	m	struct:microarrayGroups	typeref:struct:microarrayGroups::maGrouping
substDatabaseVar	hg/lib/hVarSubst.c	/^static void substDatabaseVar(char *database, char *varBase,$/;"	f	file:
substLinearGap	hg/lib/hVarSubst.c	/^static void substLinearGap(struct trackDb *tdb, struct dyString *dest)$/;"	f	file:
substMatrixHtml	hg/lib/hVarSubst.c	/^static void substMatrixHtml(struct trackDb *tdb, struct dyString *dest)$/;"	f	file:
substTrackDbVar	hg/lib/hVarSubst.c	/^static void substTrackDbVar(char *desc, struct trackDb *tdb, char *database,$/;"	f	file:
substVar	hg/lib/hVarSubst.c	/^static void substVar(char *desc, struct trackDb *tdb, char *database,$/;"	f	file:
subtrackCount	hg/lib/hui.c	/^    int *subtrackCount;              \/\/ count of subtracks$/;"	m	struct:_members	file:
subtrackFourStateChecked	hg/lib/hui.c	/^int subtrackFourStateChecked(struct trackDb *subtrack, struct cart *cart)$/;"	f
subtrackFourStateCheckedSet	hg/lib/hui.c	/^void subtrackFourStateCheckedSet(struct trackDb *subtrack, struct cart *cart,boolean checked, boolean enabled)$/;"	f
subtrackInAllCurrentABCs	hg/lib/hui.c	/^static boolean subtrackInAllCurrentABCs(struct trackDb *childTdb,membersForAll_t*membersForAll)$/;"	f	file:
subtrackList	hg/lib/hui.c	/^    struct slRef **subtrackList;     \/\/ set of subtracks belonging to each subgroup member$/;"	m	struct:_members	typeref:struct:_members::slRef	file:
subtracks	hg/inc/trackDb.h	/^    struct trackDb *subtracks;  \/* children of composite not supertracks *\/ \/\/ NOTE: can only be on one sl at a time!$/;"	m	struct:trackDb	typeref:struct:trackDb::trackDb
sufa	inc/sufa.h	/^struct sufa $/;"	s
sufaFileHeader	inc/sufa.h	/^struct sufaFileHeader$/;"	s
sufaFree	lib/sufa.c	/^void sufaFree(struct sufa **pSufa)$/;"	f
sufaOffsetToChromIx	lib/sufa.c	/^int sufaOffsetToChromIx(struct sufa *sufa, bits32 tOffset)$/;"	f
sufaRead	lib/sufa.c	/^struct sufa *sufaRead(char *fileName, boolean memoryMap)$/;"	f
suffix	hg/inc/hui.h	/^   char *suffix;  \/* Suffix of cgi variable holding search pattern. *\/$/;"	m	struct:mrnaFilter
sufx	inc/sufx.h	/^struct sufx $/;"	s
sufxFileHeader	inc/sufx.h	/^struct sufxFileHeader$/;"	s
sufxFree	lib/sufx.c	/^void sufxFree(struct sufx **pSufx)$/;"	f
sufxOffsetToChromIx	lib/sufx.c	/^int sufxOffsetToChromIx(struct sufx *sufx, bits32 tOffset)$/;"	f
sufxRead	lib/sufx.c	/^struct sufx *sufxRead(char *fileName, boolean memoryMap)$/;"	f
sumBedBlocks	hg/lib/liftOver.c	/^static int sumBedBlocks(struct bed *bed)$/;"	f	file:
sumData	hg/inc/wiggle.h	/^    double sumData;	\/* sum of the data points, for average and stddev calc *\/$/;"	m	struct:wiggle
sumData	hg/inc/wiggle.h	/^    double sumData;   \/* sum of the data points, for average and stddev calc *\/$/;"	m	struct:wiggleData
sumData	hg/lib/wiggleUtils.c	/^    double sumData;	\/* sum of data values in this block *\/$/;"	m	struct:wigStatsAcc	file:
sumData	inc/bbiFile.h	/^    double sumData;		\/* sum of values for each base. *\/$/;"	m	struct:bbiSummaryElement
sumData	inc/bbiFile.h	/^    float sumData;		\/* sum of values for each base. *\/$/;"	m	struct:bbiSummary
sumData	inc/bbiFile.h	/^    float sumData;		\/* sum of values for each base. *\/$/;"	m	struct:bbiSummaryOnDisk
sumInt	lib/rangeTree.c	/^static void *sumInt(void *a, void *b)$/;"	f	file:
sumPslBlocks	hg/lib/liftOver.c	/^static int sumPslBlocks(struct psl *psl)$/;"	f	file:
sumSquares	hg/inc/wiggle.h	/^    double sumSquares;	\/* sum of data points squared, for stddev calc *\/$/;"	m	struct:wiggle
sumSquares	hg/inc/wiggle.h	/^    double sumSquares;	\/* sum of data points squared, for stddev calc *\/$/;"	m	struct:wiggleData
sumSquares	hg/lib/wiggleUtils.c	/^    double sumSquares;	\/* sum of data values squared *\/$/;"	m	struct:wigStatsAcc	file:
sumSquares	inc/bbiFile.h	/^    double sumSquares;		\/* sum of squares for each base. *\/$/;"	m	struct:bbiSummaryElement
sumSquares	inc/bbiFile.h	/^    float sumSquares;		\/* sum of squares for each base. *\/$/;"	m	struct:bbiSummary
sumSquares	inc/bbiFile.h	/^    float sumSquares;		\/* sum of squares for each base. *\/$/;"	m	struct:bbiSummaryOnDisk
sumX	inc/correlate.h	/^    double sumX;		\/* Sum of all X's so far. *\/$/;"	m	struct:correlate
sumXX	inc/correlate.h	/^    double sumXX;		\/* Sum of all X*X *\/$/;"	m	struct:correlate
sumXY	inc/correlate.h	/^    double sumXY;		\/* Sum of all X*Y *\/$/;"	m	struct:correlate
sumY	inc/correlate.h	/^    double sumY;		\/* Sum of all Y's so far. *\/$/;"	m	struct:correlate
sumYY	inc/correlate.h	/^    double sumYY;		\/* Sum of all Y*Y *\/$/;"	m	struct:correlate
sunid	hg/inc/scopDes.h	/^    int sunid;	\/* Unique integer *\/$/;"	m	struct:scopDes
superTrackDropDown	hg/inc/hui.h	941;"	d
superTrackDropDownWithExtra	hg/lib/hui.c	/^boolean superTrackDropDownWithExtra(struct cart *cart, struct trackDb *tdb,$/;"	f
superTrackInfo	hg/lib/trackDbCustom.c	/^struct superTrackInfo {$/;"	s	file:
superfamily	hg/inc/knownToSuper.h	/^    int superfamily;	\/* Superfamily ID *\/$/;"	m	struct:knownToSuper
suppressHtml	hg/lib/hPrint.c	/^static boolean suppressHtml = FALSE;$/;"	v	file:
sv	lib/https.c	/^int sv[2]; \/* the pair of socket descriptors *\/$/;"	m	struct:netConnectHttpsParams	file:
swScore	hg/inc/rmskOut.h	/^    unsigned swScore;	\/* Smith Waterman alignment score *\/$/;"	m	struct:rmskOut
swapBlocks	lib/psl.c	/^static void swapBlocks(struct psl *psl)$/;"	f	file:
swapBytes	lib/common.c	/^void swapBytes(char *a, char *b, int length)$/;"	f
swapRCBlocks	lib/psl.c	/^static void swapRCBlocks(struct psl *psl)$/;"	f	file:
swapVars	lib/psl.c	1158;"	d	file:
sweepOutOldPacketsSeen	lib/rudp.c	/^void sweepOutOldPacketsSeen(struct rudp *ru, long now)$/;"	f
swissAC	hg/inc/lowelabPfamHit.h	/^    char *swissAC;	\/* SWISS-PROT accession number *\/$/;"	m	struct:lowelabPfamHits
swissAC	hg/lib/lowelabPfamHit.h	/^    char *swissAC;	\/* SWISS-PROT accession number *\/$/;"	m	struct:lowelabPfamHits
swissProt	hg/inc/cdsPick.h	/^    char *swissProt;	\/* Matching swissProt if available. *\/$/;"	m	struct:cdsPick
swissProt	hg/inc/easyGene.h	/^    char *swissProt;	\/* Swiss-Prot match *\/$/;"	m	struct:easyGene
swissProt	hg/inc/tigrCmrGene.h	/^    char *swissProt;	\/* SwissProt TrEMBL Accession *\/$/;"	m	struct:tigrCmrGene
swissProtId	hg/inc/bdgpSwissProt.h	/^    char *swissProtId;	\/* SwissProt ID *\/$/;"	m	struct:bdgpSwissProt
swissProtId	hg/inc/flyBaseSwissProt.h	/^    char *swissProtId;	\/* SwissProt ID *\/$/;"	m	struct:flyBaseSwissProt
switchDbTss	hg/inc/switchDbTss.h	/^struct switchDbTss$/;"	s
switchDbTssCommaIn	hg/lib/switchDbTss.c	/^struct switchDbTss *switchDbTssCommaIn(char **pS, struct switchDbTss *ret)$/;"	f
switchDbTssCommaOut	hg/inc/switchDbTss.h	65;"	d
switchDbTssFree	hg/lib/switchDbTss.c	/^void switchDbTssFree(struct switchDbTss **pEl)$/;"	f
switchDbTssFreeList	hg/lib/switchDbTss.c	/^void switchDbTssFreeList(struct switchDbTss **pList)$/;"	f
switchDbTssLoad	hg/lib/switchDbTss.c	/^struct switchDbTss *switchDbTssLoad(char **row)$/;"	f
switchDbTssLoadAll	hg/lib/switchDbTss.c	/^struct switchDbTss *switchDbTssLoadAll(char *fileName) $/;"	f
switchDbTssLoadAllByChar	hg/lib/switchDbTss.c	/^struct switchDbTss *switchDbTssLoadAllByChar(char *fileName, char chopper) $/;"	f
switchDbTssLoadAllByTab	hg/inc/switchDbTss.h	43;"	d
switchDbTssOutput	hg/lib/switchDbTss.c	/^void switchDbTssOutput(struct switchDbTss *el, FILE *f, char sep, char lastSep) $/;"	f
switchDbTssStaticLoad	hg/lib/switchDbTss.c	/^void switchDbTssStaticLoad(char **row, struct switchDbTss *ret)$/;"	f
switchDbTssTabOut	hg/inc/switchDbTss.h	62;"	d
symCount	hg/inc/wabAli.h	/^    unsigned symCount;	\/* Number of symbols in alignment. *\/$/;"	m	struct:wabAli
symCount	inc/axt.h	/^    int symCount;               \/* Size of alignments. *\/$/;"	m	struct:axt
symCount	inc/xa.h	/^    int symCount;$/;"	m	struct:xaAli
symCount	jkOwnLib/xenbig.c	/^    int symCount;$/;"	m	struct:contig	file:
symHash	hg/inc/joiner.h	/^    struct hash *symHash;	\/* Hash of symbols from file. *\/$/;"	m	struct:joiner	typeref:struct:joiner::hash
symHash	inc/xp.h	/^    struct hash *symHash;		\/* Hash of &gt; &lt; etc. *\/$/;"	m	struct:xp	typeref:struct:xp::hash
symbol	hg/inc/bdgpExprLink.h	/^    char *symbol;	\/* Symbolic gene name *\/$/;"	m	struct:bdgpExprLink
symbol	hg/inc/bdgpGeneInfo.h	/^    char *symbol;	\/* symbolic gene name *\/$/;"	m	struct:bdgpGeneInfo
symbol	hg/inc/bdgpSwissProt.h	/^    char *symbol;	\/* symbolic gene name *\/$/;"	m	struct:bdgpSwissProt
symbol	hg/inc/flyBase2004Xref.h	/^    char *symbol;	\/* Symbolic gene name *\/$/;"	m	struct:flyBase2004Xref
symbol	hg/inc/hgnc.h	/^    char *symbol;	\/* Approved Symbol *\/$/;"	m	struct:hgnc
symbol	hg/inc/mgiID.h	/^    char symbol[33];	\/* symbol *\/$/;"	m	struct:MGIid
synMap	hg/inc/synMap.h	/^struct synMap$/;"	s
synMapCommaIn	hg/lib/synMap.c	/^struct synMap *synMapCommaIn(char **pS, struct synMap *ret)$/;"	f
synMapCommaOut	hg/inc/synMap.h	51;"	d
synMapFree	hg/lib/synMap.c	/^void synMapFree(struct synMap **pEl)$/;"	f
synMapFreeList	hg/lib/synMap.c	/^void synMapFreeList(struct synMap **pList)$/;"	f
synMapLoad	hg/lib/synMap.c	/^struct synMap *synMapLoad(char **row)$/;"	f
synMapLoadAll	hg/lib/synMap.c	/^struct synMap *synMapLoadAll(char *fileName) $/;"	f
synMapNoStrandLoad	hg/lib/synMap.c	/^struct synMap *synMapNoStrandLoad(char **row)$/;"	f
synMapOutput	hg/lib/synMap.c	/^void synMapOutput(struct synMap *el, FILE *f, char sep, char lastSep) $/;"	f
synMapStaticLoad	hg/lib/synMap.c	/^void synMapStaticLoad(char **row, struct synMap *ret)$/;"	f
synMapTabOut	hg/inc/synMap.h	48;"	d
synQueue	lib/synQueue.c	/^struct synQueue$/;"	s	file:
synQueueFree	lib/synQueue.c	/^void synQueueFree(struct synQueue **pSq)$/;"	f
synQueueFreeAndVals	lib/synQueue.c	/^void synQueueFreeAndVals(struct synQueue **pSq)$/;"	f
synQueueGet	lib/synQueue.c	/^void *synQueueGet(struct synQueue *sq)$/;"	f
synQueueGrab	lib/synQueue.c	/^void *synQueueGrab(struct synQueue *sq)$/;"	f
synQueueNew	lib/synQueue.c	/^struct synQueue *synQueueNew()$/;"	f
synQueuePut	lib/synQueue.c	/^void synQueuePut(struct synQueue *sq, void *message)$/;"	f
synQueueSize	lib/synQueue.c	/^int synQueueSize(struct synQueue *sq)$/;"	f
synonym	hg/inc/goa.h	/^    char *synonym;	\/* (Optional) field for gene symbol, often like IPI00003084 *\/$/;"	m	struct:goa
synonymous_variant	hg/inc/soterm.h	/^    synonymous_variant=1819,$/;"	e	enum:__anon11
synonyms	hg/inc/flyBase2004Xref.h	/^    char *synonyms;	\/* Comma-separated list of synonyms *\/$/;"	m	struct:flyBase2004Xref
synonyms	hg/inc/hgnc.h	/^    char *synonyms;	\/* Synonyms *\/$/;"	m	struct:hgnc
syntaxError	lib/dtdParse.c	/^static void syntaxError(struct lineFile *lf)$/;"	f	file:
synteny100000	hg/inc/synteny100000.h	/^struct synteny100000$/;"	s
synteny100000CommaIn	hg/lib/synteny100000.c	/^struct synteny100000 *synteny100000CommaIn(char **pS, struct synteny100000 *ret)$/;"	f
synteny100000CommaOut	hg/inc/synteny100000.h	55;"	d
synteny100000Free	hg/lib/synteny100000.c	/^void synteny100000Free(struct synteny100000 **pEl)$/;"	f
synteny100000FreeList	hg/lib/synteny100000.c	/^void synteny100000FreeList(struct synteny100000 **pList)$/;"	f
synteny100000Load	hg/lib/synteny100000.c	/^struct synteny100000 *synteny100000Load(char **row)$/;"	f
synteny100000LoadAll	hg/lib/synteny100000.c	/^struct synteny100000 *synteny100000LoadAll(char *fileName) $/;"	f
synteny100000LoadWhere	hg/lib/synteny100000.c	/^struct synteny100000 *synteny100000LoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
synteny100000Output	hg/lib/synteny100000.c	/^void synteny100000Output(struct synteny100000 *el, FILE *f, char sep, char lastSep) $/;"	f
synteny100000StaticLoad	hg/lib/synteny100000.c	/^void synteny100000StaticLoad(char **row, struct synteny100000 *ret)$/;"	f
synteny100000TabOut	hg/inc/synteny100000.h	52;"	d
syntenyBerk	hg/inc/syntenyBerk.h	/^struct syntenyBerk$/;"	s
syntenyBerkCommaIn	hg/lib/syntenyBerk.c	/^struct syntenyBerk *syntenyBerkCommaIn(char **pS, struct syntenyBerk *ret)$/;"	f
syntenyBerkCommaOut	hg/inc/syntenyBerk.h	55;"	d
syntenyBerkFree	hg/lib/syntenyBerk.c	/^void syntenyBerkFree(struct syntenyBerk **pEl)$/;"	f
syntenyBerkFreeList	hg/lib/syntenyBerk.c	/^void syntenyBerkFreeList(struct syntenyBerk **pList)$/;"	f
syntenyBerkLoad	hg/lib/syntenyBerk.c	/^struct syntenyBerk *syntenyBerkLoad(char **row)$/;"	f
syntenyBerkLoadAll	hg/lib/syntenyBerk.c	/^struct syntenyBerk *syntenyBerkLoadAll(char *fileName) $/;"	f
syntenyBerkLoadWhere	hg/lib/syntenyBerk.c	/^struct syntenyBerk *syntenyBerkLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
syntenyBerkOutput	hg/lib/syntenyBerk.c	/^void syntenyBerkOutput(struct syntenyBerk *el, FILE *f, char sep, char lastSep) $/;"	f
syntenyBerkStaticLoad	hg/lib/syntenyBerk.c	/^void syntenyBerkStaticLoad(char **row, struct syntenyBerk *ret)$/;"	f
syntenyBerkTabOut	hg/inc/syntenyBerk.h	52;"	d
syntenySanger	hg/inc/syntenySanger.h	/^struct syntenySanger$/;"	s
syntenySangerCommaIn	hg/lib/syntenySanger.c	/^struct syntenySanger *syntenySangerCommaIn(char **pS, struct syntenySanger *ret)$/;"	f
syntenySangerCommaOut	hg/inc/syntenySanger.h	55;"	d
syntenySangerFree	hg/lib/syntenySanger.c	/^void syntenySangerFree(struct syntenySanger **pEl)$/;"	f
syntenySangerFreeList	hg/lib/syntenySanger.c	/^void syntenySangerFreeList(struct syntenySanger **pList)$/;"	f
syntenySangerLoad	hg/lib/syntenySanger.c	/^struct syntenySanger *syntenySangerLoad(char **row)$/;"	f
syntenySangerLoadAll	hg/lib/syntenySanger.c	/^struct syntenySanger *syntenySangerLoadAll(char *fileName) $/;"	f
syntenySangerLoadWhere	hg/lib/syntenySanger.c	/^struct syntenySanger *syntenySangerLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
syntenySangerOutput	hg/lib/syntenySanger.c	/^void syntenySangerOutput(struct syntenySanger *el, FILE *f, char sep, char lastSep) $/;"	f
syntenySangerStaticLoad	hg/lib/syntenySanger.c	/^void syntenySangerStaticLoad(char **row, struct syntenySanger *ret)$/;"	f
syntenySangerTabOut	hg/inc/syntenySanger.h	52;"	d
t3List	inc/supStitch.h	/^    struct trans3 *t3List;	\/* Sometimes set to three translated frames. *\/$/;"	m	struct:ssBundle	typeref:struct:ssBundle::trans3
tBase	hg/inc/affyPairs.h	/^    unsigned tBase;	\/* tBase, the target base (base in target at central position of 25-mer probe). *\/$/;"	m	struct:affyPairs
tBaseInsert	hg/inc/pslWQueryID.h	/^    unsigned tBaseInsert;	\/* Number of bases inserted in target *\/$/;"	m	struct:pslWQueryID
tBaseInsert	hg/inc/pslWScore.h	/^    int tBaseInsert;	\/* Number of bases inserted in target *\/$/;"	m	struct:pslWScore
tBaseInsert	inc/psl.h	/^    int tBaseInsert;	\/* Number of bases inserted in target *\/$/;"	m	struct:psl
tBaseInsert	inc/xAli.h	/^    int tBaseInsert;	\/* Number of bases inserted in target *\/$/;"	m	struct:xAli
tBlockBacs	inc/maDbRep.h	/^    unsigned *tBlockBacs;	\/* BAC each block starts in *\/$/;"	m	struct:mrnaAli
tBlockStarts	inc/maDbRep.h	/^    unsigned *tBlockStarts;	\/* Position within BAC of each block start *\/$/;"	m	struct:mrnaAli
tContig	inc/ens.h	/^    struct contigTree *tContig;    \/* Name of target (genomic) sequence *\/$/;"	m	struct:ensFeature	typeref:struct:ensFeature::contigTree
tDim	inc/pairHmm.h	/^    int tDim;		\/* One plus size of target - dimension of matrix. *\/$/;"	m	struct:phmmMatrix
tEnd	hg/inc/altGraph.h	/^    int tEnd;	\/* Start position in first bac *\/$/;"	m	struct:altGraph
tEnd	hg/inc/altGraphX.h	/^    int tEnd;	\/* Start position in first bac. *\/$/;"	m	struct:altGraphX
tEnd	hg/inc/blastTab.h	/^    unsigned tEnd;	\/* Start in query (non-inclusive) *\/$/;"	m	struct:blastTab
tEnd	hg/inc/chainGap.h	/^    unsigned tEnd;	\/* Alignment end position in target *\/$/;"	m	struct:chainGap
tEnd	hg/inc/chainLink.h	/^    unsigned tEnd;	\/* Alignment end position in target *\/$/;"	m	struct:chainLink
tEnd	hg/inc/chainView.h	/^    int tStart,tEnd;		  \/* Range covered in query. *\/$/;"	m	struct:chainView
tEnd	hg/inc/geneGraph.h	/^    int tStart,tEnd;                        \/* Position in genomic DNA. *\/$/;"	m	struct:ggMrnaCluster
tEnd	hg/inc/geneGraph.h	/^    unsigned int tEnd;                  \/* end of graph in target. *\/$/;"	m	struct:geneGraph
tEnd	hg/inc/ggMrnaAli.h	/^    int tEnd;	\/* End of block in target *\/$/;"	m	struct:ggMrnaBlock
tEnd	hg/inc/ggMrnaAli.h	/^    int tEnd;	\/* end  in target sequence  *\/$/;"	m	struct:ggMrnaAli
tEnd	hg/inc/ggMrnaAli.h	/^    unsigned int tStart, tEnd;  \/* coordinates that tSeq cooresponds to *\/$/;"	m	struct:ggMrnaInput
tEnd	hg/inc/ggPrivate.h	/^    int tStart,tEnd;		\/* Positions within target sequence. *\/$/;"	m	struct:clonePair
tEnd	hg/inc/netAlign.h	/^    unsigned tEnd;	\/* End on target *\/$/;"	m	struct:netAlign
tEnd	hg/inc/pslWQueryID.h	/^    unsigned tEnd;	\/* Alignment end position in target *\/$/;"	m	struct:pslWQueryID
tEnd	hg/inc/pslWScore.h	/^    unsigned tEnd;	\/* Alignment end position in target *\/$/;"	m	struct:pslWScore
tEnd	hg/inc/splignAlign.h	/^    int tEnd;	\/* target End *\/$/;"	m	struct:splignAlign
tEnd	hg/inc/txGraph.h	/^    int tEnd;	\/* Start position in first bac. *\/$/;"	m	struct:txGraph
tEnd	inc/axt.h	/^    int tStart, tEnd;		\/* Target coordinates. *\/$/;"	m	struct:axt
tEnd	inc/blastParse.h	/^    int tEnd;                           \/* Target end position. *\/$/;"	m	struct:blastBlock
tEnd	inc/boxClump.h	/^    int tStart, tEnd;		 \/* Expanse of clump in target. *\/$/;"	m	struct:boxClump
tEnd	inc/boxClump.h	/^    int tStart, tEnd;		 \/* Range covered in target. *\/$/;"	m	struct:boxIn
tEnd	inc/chain.h	/^    int tStart,tEnd;		  \/* Range covered in target. *\/$/;"	m	struct:chain
tEnd	inc/chain.h	/^    int tStart,tEnd;		\/* Range covered in target. *\/$/;"	m	struct:cBlock
tEnd	inc/ens.h	/^    int tStart, tEnd;              \/* Position in genomic sequence. *\/$/;"	m	struct:ensFeature
tEnd	inc/genoFind.h	/^    bits32 tStart, tEnd;	\/* Position in target. *\/$/;"	m	struct:gfClump
tEnd	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgAliHit
tEnd	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgAlignment
tEnd	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgBoundedHit
tEnd	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgHit
tEnd	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgRange
tEnd	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgScoredHit
tEnd	inc/psl.h	/^    int tEnd;	\/* Alignment end position in target *\/$/;"	m	struct:psl
tEnd	inc/xAli.h	/^    unsigned tEnd;	\/* Alignment end position in target *\/$/;"	m	struct:xAli
tEnd	inc/xa.h	/^    int tStart, tEnd;$/;"	m	struct:xaAli
tEnd	jkOwnLib/xenbig.c	/^    int tStart, tEnd;$/;"	m	struct:cluster	file:
tEnd	jkOwnLib/xenbig.c	/^    int tStart, tEnd;$/;"	m	struct:contig	file:
tEnd	lib/pslTransMap.c	/^    int tEnd;            \/* Target end position. *\/$/;"	m	struct:block	file:
tEndBac	inc/maDbRep.h	/^    unsigned tEndBac;	\/* ID of last genomic BAC in alignment *\/$/;"	m	struct:mrnaAli
tEndOffset	jkOwnLib/xenbig.c	/^    int tOffset, tEndOffset;$/;"	m	struct:cluster	file:
tEndOffset	jkOwnLib/xenbig.c	/^    int tOffset, tEndOffset;$/;"	m	struct:contig	file:
tEndPos	inc/maDbRep.h	/^    unsigned tEndPos;	\/* End position within last BAC *\/$/;"	m	struct:mrnaAli
tExons	hg/inc/putaInfo.h	/^    unsigned tExons[2];	\/* stamper (cds) exons *\/$/;"	m	struct:putaInfo
tFrame	inc/blastParse.h	/^    BYTE tFrame;                        \/* 0 if none. *\/$/;"	m	struct:blastBlock
tInt	hg/inc/ld2.h	/^    char tInt;	\/* Encoded T-int value between this and next marker *\/$/;"	m	struct:ld2
tIsProt	inc/genoFind.h	/^    boolean tIsProt;		\/* Target is peptide. *\/$/;"	m	struct:gfOutput
tLastPos	lib/gapCalc.c	/^    int tLastPos;	\/* Maximum position we have data on in t. *\/$/;"	m	struct:gapCalc	file:
tLastPosVal	lib/gapCalc.c	/^    double tLastPosVal;	\/* Value at max pos. *\/$/;"	m	struct:gapCalc	file:
tLastSlope	lib/gapCalc.c	/^    double tLastSlope;	\/* What to add for each base after last. *\/$/;"	m	struct:gapCalc	file:
tLen	hg/inc/samAlignment.h	/^    int tLen;	\/* Size of DNA template for mated pairs.  -size for one of mate pairs *\/$/;"	m	struct:samAlignment
tLong	lib/gapCalc.c	/^    double *tLong; \/* Values to interpolate between for larger gaps in t. *\/$/;"	m	struct:gapCalc	file:
tN	hg/inc/chainNet.h	/^    int tN;	   \/* Count of N's in target chromosome or -1 *\/$/;"	m	struct:cnFill
tN	hg/inc/netAlign.h	/^    int tN;	\/* Unsequenced bases on target. -1 for undefined *\/$/;"	m	struct:netAlign
tName	hg/inc/altGraph.h	/^    char *tName;	\/* name of target sequence, often a chrom. *\/$/;"	m	struct:altGraph
tName	hg/inc/altGraphX.h	/^    char *tName;	\/* name of target sequence, often a chrom. *\/$/;"	m	struct:altGraphX
tName	hg/inc/chainGap.h	/^    char *tName;	\/* Target sequence name *\/$/;"	m	struct:chainGap
tName	hg/inc/chainLink.h	/^    char *tName;	\/* Target sequence name *\/$/;"	m	struct:chainLink
tName	hg/inc/chainView.h	/^    char *tName;		  \/* target name, allocated here. *\/$/;"	m	struct:chainView
tName	hg/inc/geneGraph.h	/^    char *tName;                            \/* target name, usually chrom. *\/$/;"	m	struct:ggMrnaCluster
tName	hg/inc/geneGraph.h	/^    char *tName;                        \/* name of target, usually chromosom *\/$/;"	m	struct:geneGraph
tName	hg/inc/ggMrnaAli.h	/^    char *tName;	\/* target that this alignment it to  *\/$/;"	m	struct:ggMrnaAli
tName	hg/inc/ggMrnaAli.h	/^    char *tName;               \/* name of target sequence, i.e. chrom *\/$/;"	m	struct:ggMrnaInput
tName	hg/inc/netAlign.h	/^    char *tName;	\/* Target chromosome *\/$/;"	m	struct:netAlign
tName	hg/inc/pslWQueryID.h	/^    char *tName;	\/* Target sequence name *\/$/;"	m	struct:pslWQueryID
tName	hg/inc/pslWScore.h	/^    char *tName;	\/* Target sequence name *\/$/;"	m	struct:pslWScore
tName	hg/inc/txGraph.h	/^    char *tName;	\/* name of target sequence, often a chrom. *\/$/;"	m	struct:txGraph
tName	hg/lib/chainNetDbLoad.c	/^    char *tName;		\/* Name of target.  Not allocated here. *\/$/;"	m	struct:cnlHelper	file:
tName	inc/axt.h	/^    char *tName;		\/* Name of target. *\/$/;"	m	struct:axt
tName	inc/chain.h	/^    char *tName;		  \/* target name, allocated here. *\/$/;"	m	struct:chain
tName	inc/psl.h	/^    char *tName;	\/* Target sequence name *\/$/;"	m	struct:psl
tName	inc/xAli.h	/^    char *tName;	\/* Target sequence name *\/$/;"	m	struct:xAli
tNewR	hg/inc/chainNet.h	/^    int tNewR;	   \/* Count of new (lineage specific) repeats in target *\/$/;"	m	struct:cnFill
tNewR	hg/inc/netAlign.h	/^    int tNewR;	\/* Lineage specific repeats on target. -1 for undefined *\/$/;"	m	struct:netAlign
tNumInsert	hg/inc/pslWQueryID.h	/^    unsigned tNumInsert;	\/* Number of inserts in target *\/$/;"	m	struct:pslWQueryID
tNumInsert	hg/inc/pslWScore.h	/^    unsigned tNumInsert;	\/* Number of inserts in target *\/$/;"	m	struct:pslWScore
tNumInsert	inc/psl.h	/^    unsigned tNumInsert;	\/* Number of inserts in target *\/$/;"	m	struct:psl
tNumInsert	inc/xAli.h	/^    unsigned tNumInsert;	\/* Number of inserts in target *\/$/;"	m	struct:xAli
tOffset	jkOwnLib/xenbig.c	/^    int tOffset, tEndOffset;$/;"	m	struct:cluster	file:
tOffset	jkOwnLib/xenbig.c	/^    int tOffset, tEndOffset;$/;"	m	struct:contig	file:
tOldR	hg/inc/chainNet.h	/^    int tOldR;	   \/* Count of ancient repeats (pre-split) in target *\/$/;"	m	struct:cnFill
tOldR	hg/inc/netAlign.h	/^    int tOldR;	\/* Bases of ancient repeats on target. -1 for undefined *\/$/;"	m	struct:netAlign
tOrientation	inc/hgap.h	/^    int tOrientation;	  \/* +1 or -1 orientation. *\/$/;"	m	struct:hgAliHit
tOrientation	inc/hgap.h	/^    int tOrientation;	  \/* +1 or -1 orientation. *\/$/;"	m	struct:hgAlignment
tOrientation	inc/hgap.h	/^    int tOrientation;	  \/* +1 or -1 orientation. *\/$/;"	m	struct:hgBoundedHit
tOrientation	inc/hgap.h	/^    int tOrientation;	  \/* +1 or -1 orientation. *\/$/;"	m	struct:hgHit
tOrientation	inc/hgap.h	/^    int tOrientation;	  \/* +1 or -1 orientation. *\/$/;"	m	struct:hgScoredHit
tPosCount	lib/gapCalc.c	/^    int tPosCount;	\/* Number of long positions in t. *\/$/;"	m	struct:gapCalc	file:
tProb	inc/dnaMotif.h	/^    float *tProb;       \/* Probability of T's in each column. *\/$/;"	m	struct:dnaMotif
tPslToRangeList	hg/lib/liftOver.c	/^static struct liftRange *tPslToRangeList(struct psl *psl)$/;"	f	file:
tR	hg/inc/chainNet.h	/^    int tR;	   \/* Count of repeats in target chromosome or -1 *\/$/;"	m	struct:cnFill
tR	hg/inc/netAlign.h	/^    int tR;	\/* RepeatMasker bases on target. -1 for undefined *\/$/;"	m	struct:netAlign
tRNAs	hg/inc/tRNAs.h	/^struct tRNAs$/;"	s
tRNAsCommaIn	hg/lib/tRNAs.c	/^struct tRNAs *tRNAsCommaIn(char **pS, struct tRNAs *ret)$/;"	f
tRNAsCommaOut	hg/inc/tRNAs.h	66;"	d
tRNAsFree	hg/lib/tRNAs.c	/^void tRNAsFree(struct tRNAs **pEl)$/;"	f
tRNAsFreeList	hg/lib/tRNAs.c	/^void tRNAsFreeList(struct tRNAs **pList)$/;"	f
tRNAsLoad	hg/lib/tRNAs.c	/^struct tRNAs *tRNAsLoad(char **row)$/;"	f
tRNAsLoadAll	hg/lib/tRNAs.c	/^struct tRNAs *tRNAsLoadAll(char *fileName) $/;"	f
tRNAsLoadAllByChar	hg/lib/tRNAs.c	/^struct tRNAs *tRNAsLoadAllByChar(char *fileName, char chopper) $/;"	f
tRNAsLoadAllByTab	hg/inc/tRNAs.h	44;"	d
tRNAsOutput	hg/lib/tRNAs.c	/^void tRNAsOutput(struct tRNAs *el, FILE *f, char sep, char lastSep) $/;"	f
tRNAsStaticLoad	hg/lib/tRNAs.c	/^void tRNAsStaticLoad(char **row, struct tRNAs *ret)$/;"	f
tRNAsTabOut	hg/inc/tRNAs.h	63;"	d
tReps	hg/inc/pseudoGeneLink.h	/^    unsigned tReps;	\/* repeats in gene *\/$/;"	m	struct:pseudoGeneLink
tReps	hg/inc/retroMrnaInfo.h	/^    unsigned tReps;	\/* repeats in gene col30 *\/$/;"	m	struct:retroMrnaInfo
tReps	hg/inc/ucscRetroInfo.h	/^    unsigned tReps;	\/* repeats in gene col30 *\/$/;"	m	struct:ucscRetroInfo
tRnaName	hg/inc/kgXref.h	/^    char *tRnaName;	\/* Name from the tRNA track *\/$/;"	m	struct:kgXref
tSeq	hg/inc/simpleNucDiff.h	/^    char *tSeq;	\/* Sequence in target species *\/$/;"	m	struct:simpleNucDiff
tSeq	inc/xAli.h	/^    char **tSeq;	\/* Target sequence for each block. *\/$/;"	m	struct:xAli
tSequence	inc/psl.h	/^    char **tSequence;  \/* target sequence for each block *\/$/;"	m	struct:psl
tSize	hg/inc/chainNet.h	/^    int tStart, tSize;	   \/* Range in target chromosome. *\/$/;"	m	struct:cnFill
tSize	hg/inc/chainView.h	/^    int tSize;			  \/* Overall size of target. *\/$/;"	m	struct:chainView
tSize	hg/inc/pslWQueryID.h	/^    unsigned tSize;	\/* Target sequence size *\/$/;"	m	struct:pslWQueryID
tSize	hg/inc/pslWScore.h	/^    unsigned tSize;	\/* Target sequence size *\/$/;"	m	struct:pslWScore
tSize	inc/axt.h	/^    int tSize;			\/* Size of target. *\/$/;"	m	struct:axtBundle
tSize	inc/chain.h	/^    int tSize;			  \/* Overall size of target. *\/$/;"	m	struct:chain
tSize	inc/psl.h	/^    unsigned tSize;	\/* Target sequence size *\/$/;"	m	struct:psl
tSize	inc/xAli.h	/^    unsigned tSize;	\/* Target sequence size *\/$/;"	m	struct:xAli
tSizes	hg/lib/alignSeqSizes.c	/^    struct hash* tSizes;$/;"	m	struct:alignSeqSizes	typeref:struct:alignSeqSizes::hash	file:
tSlipIx	jkOwnLib/xensmall.c	/^    tSlipIx,$/;"	e	enum:sevenStateIx	file:
tSlipScore	jkOwnLib/xensmall.c	260;"	d	file:
tSlipScore	jkOwnLib/xensmall.c	462;"	d	file:
tSlipScore	lib/axtAffine.c	182;"	d	file:
tSlipScore	lib/axtAffine.c	56;"	d	file:
tSlipState	jkOwnLib/xensmall.c	291;"	d	file:
tSlipState	jkOwnLib/xensmall.c	467;"	d	file:
tSlipState	lib/axtAffine.c	187;"	d	file:
tSlipState	lib/axtAffine.c	87;"	d	file:
tSmall	lib/gapCalc.c	/^    int *tSmall;   \/* Table for small gaps in t. *\/$/;"	m	struct:gapCalc	file:
tStart	hg/inc/affyOffset.h	/^    unsigned tStart;	\/* Start of 'piece' in contig. *\/$/;"	m	struct:affyOffset
tStart	hg/inc/altGraph.h	/^    int tStart;	\/* First bac touched by graph *\/$/;"	m	struct:altGraph
tStart	hg/inc/altGraphX.h	/^    int tStart;	\/* First bac touched by graph. *\/$/;"	m	struct:altGraphX
tStart	hg/inc/blastTab.h	/^    unsigned tStart;	\/* Start in target (0 based) *\/$/;"	m	struct:blastTab
tStart	hg/inc/chainGap.h	/^    unsigned tStart;	\/* Alignment start position in target *\/$/;"	m	struct:chainGap
tStart	hg/inc/chainLink.h	/^    unsigned tStart;	\/* Alignment start position in target *\/$/;"	m	struct:chainLink
tStart	hg/inc/chainNet.h	/^    int tStart, tSize;	   \/* Range in target chromosome. *\/$/;"	m	struct:cnFill
tStart	hg/inc/chainView.h	/^    int tStart,tEnd;		  \/* Range covered in query. *\/$/;"	m	struct:chainView
tStart	hg/inc/geneGraph.h	/^    int tStart,tEnd;                        \/* Position in genomic DNA. *\/$/;"	m	struct:ggMrnaCluster
tStart	hg/inc/geneGraph.h	/^    unsigned int tStart;                \/* start of graph in target. *\/$/;"	m	struct:geneGraph
tStart	hg/inc/ggMrnaAli.h	/^    int tStart;	\/* Start of block in target *\/$/;"	m	struct:ggMrnaBlock
tStart	hg/inc/ggMrnaAli.h	/^    int tStart;	\/* start in target sequence  *\/$/;"	m	struct:ggMrnaAli
tStart	hg/inc/ggMrnaAli.h	/^    unsigned int tStart, tEnd;  \/* coordinates that tSeq cooresponds to *\/$/;"	m	struct:ggMrnaInput
tStart	hg/inc/ggPrivate.h	/^    int tStart,tEnd;		\/* Positions within target sequence. *\/$/;"	m	struct:clonePair
tStart	hg/inc/netAlign.h	/^    unsigned tStart;	\/* Start on target *\/$/;"	m	struct:netAlign
tStart	hg/inc/pslWQueryID.h	/^    unsigned tStart;	\/* Alignment start position in target *\/$/;"	m	struct:pslWQueryID
tStart	hg/inc/pslWScore.h	/^    unsigned tStart;	\/* Alignment start position in target *\/$/;"	m	struct:pslWScore
tStart	hg/inc/splignAlign.h	/^    int tStart;	\/* target Start *\/$/;"	m	struct:splignAlign
tStart	hg/inc/txGraph.h	/^    int tStart;	\/* First bac touched by graph. *\/$/;"	m	struct:txGraph
tStart	inc/axt.h	/^    int tStart, tEnd;		\/* Target coordinates. *\/$/;"	m	struct:axt
tStart	inc/blastParse.h	/^    int tStart;                         \/* Target start position. [0..n) *\/$/;"	m	struct:blastBlock
tStart	inc/boxClump.h	/^    int tStart, tEnd;		 \/* Expanse of clump in target. *\/$/;"	m	struct:boxClump
tStart	inc/boxClump.h	/^    int tStart, tEnd;		 \/* Range covered in target. *\/$/;"	m	struct:boxIn
tStart	inc/chain.h	/^    int tStart,tEnd;		  \/* Range covered in target. *\/$/;"	m	struct:chain
tStart	inc/chain.h	/^    int tStart,tEnd;		\/* Range covered in target. *\/$/;"	m	struct:cBlock
tStart	inc/ens.h	/^    int tStart, tEnd;              \/* Position in genomic sequence. *\/$/;"	m	struct:ensFeature
tStart	inc/genoFind.h	/^    bits32 tStart, tEnd;	\/* Position in target. *\/$/;"	m	struct:gfClump
tStart	inc/genoFind.h	/^   bits32 tStart;		\/* Where it hits in target. *\/$/;"	m	struct:gfHit
tStart	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgAliHit
tStart	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgAlignment
tStart	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgBoundedHit
tStart	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgHit
tStart	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgRange
tStart	inc/hgap.h	/^    int tStart, tEnd;	  \/* Position in target or only sequence tStart <= x < tEnd *\/$/;"	m	struct:hgScoredHit
tStart	inc/psl.h	/^    int tStart;	\/* Alignment start position in target *\/$/;"	m	struct:psl
tStart	inc/xAli.h	/^    unsigned tStart;	\/* Alignment start position in target *\/$/;"	m	struct:xAli
tStart	inc/xa.h	/^    int tStart, tEnd;$/;"	m	struct:xaAli
tStart	jkOwnLib/xenbig.c	/^    int tStart, tEnd;$/;"	m	struct:cluster	file:
tStart	jkOwnLib/xenbig.c	/^    int tStart, tEnd;$/;"	m	struct:contig	file:
tStart	lib/pslTransMap.c	/^    int tStart;          \/* Target start position. *\/$/;"	m	struct:block	file:
tStartBac	inc/maDbRep.h	/^    unsigned tStartBac;	\/* ID of first genomic BAC in alignment *\/$/;"	m	struct:mrnaAli
tStartPos	inc/maDbRep.h	/^    unsigned tStartPos;	\/* Start position within first BAC *\/$/;"	m	struct:mrnaAli
tStarts	hg/inc/mrnaMisMatch.h	/^    unsigned *tStarts;	\/* chrom start of each misMatch *\/$/;"	m	struct:mrnaMisMatch
tStarts	hg/inc/pslWQueryID.h	/^    unsigned *tStarts;	\/* Start of each block in target. *\/$/;"	m	struct:pslWQueryID
tStarts	hg/inc/pslWScore.h	/^    unsigned *tStarts;	\/* Start of each block in target. *\/$/;"	m	struct:pslWScore
tStarts	inc/psl.h	/^    unsigned *tStarts;	\/* Start of each block in target. *\/$/;"	m	struct:psl
tStarts	inc/xAli.h	/^    unsigned *tStarts;	\/* Start of each block in target. *\/$/;"	m	struct:xAli
tStrand	inc/axt.h	/^    char tStrand;               \/* Target strand - currently always +. *\/$/;"	m	struct:axt
tStrand	inc/blastParse.h	/^    BYTE tStrand;                       \/* Target strand (+1 or -1) *\/$/;"	m	struct:blastBlock
tStrand	inc/xa.h	/^    char tStrand;$/;"	m	struct:xaAli
tStrand	jkOwnLib/xenbig.c	/^    char tStrand;$/;"	m	struct:cluster	file:
tStrand	jkOwnLib/xenbig.c	/^    char tStrand;$/;"	m	struct:contig	file:
tSym	hg/inc/wabAli.h	/^    char *tSym;	\/* Target bases plus '-'s. *\/$/;"	m	struct:wabAli
tSym	inc/axt.h	/^    char *qSym, *tSym;          \/* Alignments. *\/$/;"	m	struct:axt
tSym	inc/blastParse.h	/^    char *tSym;                         \/* Target letters (including '-') *\/$/;"	m	struct:blastBlock
tSym	inc/xa.h	/^    char *qSym, *tSym, *hSym;$/;"	m	struct:xaAli
tSym	jkOwnLib/xenbig.c	/^    char *tSym;     \/* Target symbols (nucleotides and insert char) *\/$/;"	m	struct:contig	file:
tTrf	hg/inc/chainNet.h	/^    int tTrf;	   \/* Count of simple repeats, period 12 or less. *\/$/;"	m	struct:cnFill
tTrf	hg/inc/netAlign.h	/^    int tTrf;	\/* Bases of Tandam repeats on target. -1 for undefined *\/$/;"	m	struct:netAlign
t_byte	inc/asParse.h	/^   t_byte,     \/* signed 8 bit integer *\/$/;"	e	enum:asTypes
t_char	inc/asParse.h	/^   t_char,     \/* character or fixed size character array. *\/$/;"	e	enum:asTypes
t_double	inc/asParse.h	/^   t_double,   \/* double precision floating point. *\/$/;"	e	enum:asTypes
t_enum	inc/asParse.h	/^   t_enum,     \/* enumerated symbolic values *\/$/;"	e	enum:asTypes
t_float	inc/asParse.h	/^   t_float,    \/* single precision floating point. *\/$/;"	e	enum:asTypes
t_int	inc/asParse.h	/^   t_int,      \/* signed 32 bit integer *\/$/;"	e	enum:asTypes
t_lstring	inc/asParse.h	/^   t_lstring,     \/* variable sized large string. *\/$/;"	e	enum:asTypes
t_object	inc/asParse.h	/^   t_object,   \/* composite object - object\/table - forms lists. *\/$/;"	e	enum:asTypes
t_off	inc/asParse.h	/^   t_off,      \/* 64 bit integer. *\/$/;"	e	enum:asTypes
t_set	inc/asParse.h	/^   t_set,      \/* set of symbolic values *\/$/;"	e	enum:asTypes
t_short	inc/asParse.h	/^   t_short,    \/* signed 16 bit integer *\/$/;"	e	enum:asTypes
t_simple	inc/asParse.h	/^   t_simple,   \/* simple composite object - forms arrays. *\/$/;"	e	enum:asTypes
t_string	inc/asParse.h	/^   t_string,   \/* varchar\/char * (variable size string up to 255 chars)  *\/$/;"	e	enum:asTypes
t_ubyte	inc/asParse.h	/^   t_ubyte,    \/* unsigned 8 bit integer *\/$/;"	e	enum:asTypes
t_uint	inc/asParse.h	/^   t_uint,     \/* unsigned 32 bit integer *\/$/;"	e	enum:asTypes
t_ushort	inc/asParse.h	/^   t_ushort,   \/* unsigned 16 bit integer *\/$/;"	e	enum:asTypes
tabBlastOut	lib/blastOut.c	/^static void tabBlastOut(struct axtBundle *abList, int queryIx, boolean isProt, $/;"	f	file:
tabChopper	hg/lib/chromGraphFactory.c	/^static int tabChopper(char *line, char **cols, int maxCol)$/;"	f	file:
tabOut	lib/phyloTree.c	/^static void tabOut(FILE *f)$/;"	f	file:
tabRow	inc/tabRow.h	/^struct tabRow$/;"	s
tabRowByChar	lib/tabRow.c	/^struct tabRow *tabRowByChar(struct slName *lineList, char c, char *fileName,$/;"	f
tabRowByFixedGuess	lib/tabRow.c	/^struct tabRow *tabRowByFixedGuess(struct slName *lineList, char *fileName)$/;"	f
tabRowByFixedOffsets	lib/tabRow.c	/^struct tabRow *tabRowByFixedOffsets(struct slName *lineList, struct slInt *offList,$/;"	f
tabRowByWhite	lib/tabRow.c	/^struct tabRow *tabRowByWhite(struct slName *lineList, char *fileName,$/;"	f
tabRowGuessFixedOffsets	lib/tabRow.c	/^struct slInt *tabRowGuessFixedOffsets(struct slName *lineList, char *fileName)$/;"	f
tabRowMaxColCount	lib/tabRow.c	/^int tabRowMaxColCount(struct tabRow *rowList)$/;"	f
tabRowNew	lib/tabRow.c	/^struct tabRow *tabRowNew(int colCount)$/;"	f
tabix	inc/linefile.h	/^    tabix_t *tabix;		\/* A tabix-compressed file and its binary index file (.tbi) *\/$/;"	m	struct:lineFile
tabixIter	inc/linefile.h	/^    ti_iter_t tabixIter;	\/* An iterator to get decompressed indexed lines of text *\/$/;"	m	struct:lineFile
table	hg/inc/hgMaf.h	/^    char *table;                \/* phastCons table *\/$/;"	m	struct:consWiggle
table	hg/inc/hui.h	/^   char *table;	  \/* Associated table to search. *\/$/;"	m	struct:mrnaFilter
table	hg/inc/joiner.h	/^    char *table;		\/* Associated table. *\/$/;"	m	struct:joinerField
table	hg/inc/joiner.h	/^    char *table;		\/* Table. *\/$/;"	m	struct:joinerDtf
table	hg/inc/joiner.h	/^    char *table;		\/* The table name. *\/$/;"	m	struct:joinerTable
table	hg/inc/joiner.h	/^    struct joinerTable *table;		\/* A table. *\/$/;"	m	struct:joinerDependency	typeref:struct:joinerDependency::joinerTable
table	hg/inc/trackDb.h	/^    char *table; \/* Symbolic ID of Table - used in database. Same as track usually. *\/$/;"	m	struct:trackDb
table	hg/lib/annoStreamDb.c	/^    char *table;			\/\/ Table name, must exist in database$/;"	m	struct:annoStreamDb	file:
table	hg/lib/chromGraphFactory.c	/^    char *table;	\/* Table to assist in recognition *\/$/;"	m	struct:markerTypeRecognizer	file:
table	hg/lib/genePredReader.c	/^    char *table;            \/* name of table or file *\/$/;"	m	struct:genePredReader	file:
table	hg/lib/itemAttr.c	/^    char *table;$/;"	m	struct:itemAttrTbl	file:
table	hg/lib/pslReader.c	/^    char *table;            \/* name of table or file *\/$/;"	m	struct:pslReader	file:
table	inc/hash.h	/^    struct hashEl **table;	\/* Hash buckets. *\/$/;"	m	struct:hash	typeref:struct:hash::hashEl
table	lib/keys.c	/^    struct keyVal *table; \/* The table itself. *\/$/;"	m	struct:kvt	typeref:struct:kvt::keyVal	file:
tableDescriptions	hg/inc/tableDescriptions.h	/^struct tableDescriptions$/;"	s
tableDescriptionsCommaIn	hg/lib/tableDescriptions.c	/^struct tableDescriptions *tableDescriptionsCommaIn(char **pS, struct tableDescriptions *ret)$/;"	f
tableDescriptionsCommaOut	hg/inc/tableDescriptions.h	57;"	d
tableDescriptionsFree	hg/lib/tableDescriptions.c	/^void tableDescriptionsFree(struct tableDescriptions **pEl)$/;"	f
tableDescriptionsFreeList	hg/lib/tableDescriptions.c	/^void tableDescriptionsFreeList(struct tableDescriptions **pList)$/;"	f
tableDescriptionsLoad	hg/lib/tableDescriptions.c	/^struct tableDescriptions *tableDescriptionsLoad(char **row)$/;"	f
tableDescriptionsLoadAll	hg/lib/tableDescriptions.c	/^struct tableDescriptions *tableDescriptionsLoadAll(char *fileName) $/;"	f
tableDescriptionsLoadAllByChar	hg/lib/tableDescriptions.c	/^struct tableDescriptions *tableDescriptionsLoadAllByChar(char *fileName, char chopper) $/;"	f
tableDescriptionsLoadAllByTab	hg/inc/tableDescriptions.h	35;"	d
tableDescriptionsOutput	hg/lib/tableDescriptions.c	/^void tableDescriptionsOutput(struct tableDescriptions *el, FILE *f, char sep, char lastSep) $/;"	f
tableDescriptionsStaticLoad	hg/lib/tableDescriptions.c	/^void tableDescriptionsStaticLoad(char **row, struct tableDescriptions *ret)$/;"	f
tableDescriptionsTabOut	hg/inc/tableDescriptions.h	54;"	d
tableExists	hg/lib/joiner.c	/^static boolean tableExists(char *database, char *table, char *splitPrefix)$/;"	f	file:
tableFromField	hg/lib/joiner.c	/^static struct joinerTable *tableFromField(struct joinerField *jf)$/;"	f	file:
tableList	hg/inc/hgFind.h	/^    struct hgPosTable *tableList; \/* List of tables. *\/$/;"	m	struct:hgPositions	typeref:struct:hgPositions::hgPosTable
tableList	hg/inc/joiner.h	/^    struct joinerTable *tableList;	\/* List of tables - can include SQL wildcards. *\/$/;"	m	struct:joinerType	typeref:struct:joinerType::joinerTable
tableList	hg/inc/joiner.h	/^    struct slName *tableList;	\/* List of tables. *\/$/;"	m	struct:joinerIgnore	typeref:struct:joinerIgnore::slName
tableList	hg/lib/hdb.c	/^static struct hash *tableList = NULL; \/\/ db to track to tables$/;"	v	typeref:struct:hash	file:
tableList	inc/rql.h	/^    struct slName *tableList;	\/* List of tables if any. *\/$/;"	m	struct:rqlStatement	typeref:struct:rqlStatement::slName
tableListGetDbHash	hg/lib/hdb.c	/^static struct hash *tableListGetDbHash(char *db)$/;"	f	file:
tableListHashAdd	hg/lib/hdb.c	/^static void tableListHashAdd(struct hash *dbTblHash, char *profile, char *db)$/;"	f	file:
tableListProcessTblProfile	hg/lib/hdb.c	/^static void tableListProcessTblProfile(char *profile, char *db)$/;"	f	file:
tableListProfChecked	hg/lib/hdb.c	/^static struct hash *tableListProfChecked = NULL;  \/\/ profile:db that have been check$/;"	v	typeref:struct:hash	file:
tableName	hg/inc/tableDescriptions.h	/^    char *tableName;	\/* Name of table (with chr*_ replaced with chrN_) *\/$/;"	m	struct:tableDescriptions
tableName	hg/inc/trackTable.h	/^    char *tableName;	\/* Name of table (without any chrN_ if split) *\/$/;"	m	struct:trackTable
tableStatus	hg/inc/tableStatus.h	/^struct tableStatus$/;"	s
tableStatusCommaIn	hg/lib/tableStatus.c	/^struct tableStatus *tableStatusCommaIn(char **pS, struct tableStatus *ret)$/;"	f
tableStatusCommaOut	hg/inc/tableStatus.h	69;"	d
tableStatusFree	hg/lib/tableStatus.c	/^void tableStatusFree(struct tableStatus **pEl)$/;"	f
tableStatusFreeList	hg/lib/tableStatus.c	/^void tableStatusFreeList(struct tableStatus **pList)$/;"	f
tableStatusLoad	hg/lib/tableStatus.c	/^struct tableStatus *tableStatusLoad(char **row)$/;"	f
tableStatusLoadAll	hg/lib/tableStatus.c	/^struct tableStatus *tableStatusLoadAll(char *fileName) $/;"	f
tableStatusLoadAllByChar	hg/lib/tableStatus.c	/^struct tableStatus *tableStatusLoadAllByChar(char *fileName, char chopper) $/;"	f
tableStatusLoadAllByTab	hg/inc/tableStatus.h	47;"	d
tableStatusOutput	hg/lib/tableStatus.c	/^void tableStatusOutput(struct tableStatus *el, FILE *f, char sep, char lastSep) $/;"	f
tableStatusStaticLoad	hg/lib/tableStatus.c	/^void tableStatusStaticLoad(char **row, struct tableStatus *ret)$/;"	f
tableStatusTabOut	hg/inc/tableStatus.h	66;"	d
tableToAliasHash	hg/lib/chromGraphFactory.c	/^struct hash *tableToAliasHash(struct sqlConnection *conn, char *table,$/;"	f
tableToChromPosHash	hg/lib/chromGraphFactory.c	/^struct hash *tableToChromPosHash(struct sqlConnection *conn, char *table, $/;"	f
tablesIgnored	hg/inc/joiner.h	/^    struct joinerIgnore *tablesIgnored;	\/* List of tables to ignore. *\/$/;"	m	struct:joiner	typeref:struct:joiner::joinerIgnore
tag	hg/inc/sageCounts.h	/^    char tag[11];	\/* Tag sequence *\/$/;"	m	struct:sageCounts
tag	inc/gff3.h	/^    char *tag;                 \/* name of attribute *\/$/;"	m	struct:gff3Attr
tag	inc/xp.h	/^    struct dyString *tag;   \/* Name of tag. *\/$/;"	m	struct:xpStack	typeref:struct:xpStack::dyString
tagAbort	lib/htmlPage.c	/^static void tagAbort(struct htmlPage *page, struct htmlTag *tag, char *format, ...)$/;"	f	file:
tagAlign	hg/inc/tagAlign.h	/^struct tagAlign$/;"	s
tagAlignCommaOut	hg/inc/tagAlign.h	60;"	d
tagAlignLoadAllByTab	hg/inc/tagAlign.h	38;"	d
tagAlignTabOut	hg/inc/tagAlign.h	57;"	d
tagEncode	hg/lib/hui.c	/^static char *tagEncode(char *name)$/;"	f	file:
tagName	inc/htmlPage.h	/^    char *tagName;		\/* Name of tag.  Not allocated here. *\/$/;"	m	struct:htmlFormVar
tagTypeVals	hg/inc/samAlignment.h	/^    char *tagTypeVals;	\/* Tab-delimited list of tag:type:value optional extra fields *\/$/;"	m	struct:samAlignment
tagVaWarn	lib/htmlPage.c	/^static void tagVaWarn(struct htmlPage *page, struct htmlTag *tag, char *format, $/;"	f	file:
tagWarn	lib/htmlPage.c	/^static void tagWarn(struct htmlPage *page, struct htmlTag *tag, char *format, ...)$/;"	f	file:
tags	hg/inc/sage.h	/^    char **tags;	\/* Tags for this unigene sequence. *\/$/;"	m	struct:sage
tags	hg/lib/hui.c	/^    char **tags;$/;"	m	struct:_members	file:
tags	inc/htmlPage.h	/^    struct htmlTag *tags;		\/* List of tags in this page. *\/$/;"	m	struct:htmlPage	typeref:struct:htmlPage::htmlTag
tags	inc/htmlPage.h	/^    struct slRef *tags;	        \/* List of references associated tags. *\/$/;"	m	struct:htmlFormVar	typeref:struct:htmlFormVar::slRef
tail	inc/dlist.h	/^    struct dlNode *tail;$/;"	m	struct:dlList	typeref:struct:dlList::dlNode
tailPolyASizeLoose	lib/dnautil.c	/^int tailPolyASizeLoose(DNA *dna, int size)$/;"	f
target	hg/inc/blastTab.h	/^    char *target;	\/* Name of target sequence *\/$/;"	m	struct:blastTab
target	hg/inc/flyreg.h	/^    char *target;	\/* Target *\/$/;"	m	struct:flyreg
target	hg/inc/flyreg2.h	/^    char *target;	\/* Target *\/$/;"	m	struct:flyreg2
target	hg/inc/rankProp.h	/^    char *target;	\/* known genes id of target protein *\/$/;"	m	struct:rankProp
target	hg/inc/splignAlign.h	/^    char *target;	\/* target name *\/$/;"	m	struct:splignAlign
target	inc/chainConnect.h	/^    struct dnaSeq *target;$/;"	m	struct:chainConnect	typeref:struct:chainConnect::dnaSeq
target	inc/genoFind.h	/^    struct gfSeqSource *target;	\/* Target source sequence. *\/$/;"	m	struct:gfClump	typeref:struct:gfClump::gfSeqSource
target	inc/hgap.h	/^    char *target;	  \/* Name of target seq. (Not allocated here.) *\/$/;"	m	struct:hgAliHit
target	inc/hgap.h	/^    char *target;	  \/* Name of target seq. (Not allocated here.) *\/$/;"	m	struct:hgAlignment
target	inc/hgap.h	/^    char *target;	  \/* Name of target seq. (Not allocated here.) *\/$/;"	m	struct:hgBoundedHit
target	inc/hgap.h	/^    char *target;	  \/* Name of target seq. (Not allocated here.) *\/$/;"	m	struct:hgHit
target	inc/hgap.h	/^    char *target;	  \/* Name of target seq. (Not allocated here.) *\/$/;"	m	struct:hgScoredHit
target	inc/pairHmm.h	/^    char *target;    	\/* Other sequence to align. *\/$/;"	m	struct:phmmMatrix
target	inc/xa.h	/^    char *target;$/;"	m	struct:xaAli
target	jkOwnLib/crudeali.c	/^    struct nt4Seq *target;$/;"	m	struct:crudeGene	typeref:struct:crudeGene::nt4Seq	file:
target	jkOwnLib/xenbig.c	/^    char *target;$/;"	m	struct:cluster	file:
target	jkOwnLib/xenbig.c	/^    char *target;$/;"	m	struct:contig	file:
targetAnnotation	hg/inc/rnaHybridization.h	/^    unsigned targetAnnotation;	\/* 1 if target is annotated on same strand, zero otherwise *\/$/;"	m	struct:rnaHybridization
targetClump	jkOwnLib/genoFind.c	/^static void targetClump(struct genoFind *gf, struct gfClump **pClumpList, struct gfClump *clump)$/;"	f	file:
targetDb	hg/inc/targetDb.h	/^struct targetDb$/;"	s
targetDbCommaIn	hg/lib/targetDb.c	/^struct targetDb *targetDbCommaIn(char **pS, struct targetDb *ret)$/;"	f
targetDbCommaOut	hg/inc/targetDb.h	66;"	d
targetDbFree	hg/lib/targetDb.c	/^void targetDbFree(struct targetDb **pEl)$/;"	f
targetDbFreeList	hg/lib/targetDb.c	/^void targetDbFreeList(struct targetDb **pList)$/;"	f
targetDbLoad	hg/lib/targetDb.c	/^struct targetDb *targetDbLoad(char **row)$/;"	f
targetDbLoadAll	hg/lib/targetDb.c	/^struct targetDb *targetDbLoadAll(char *fileName) $/;"	f
targetDbLoadAllByChar	hg/lib/targetDb.c	/^struct targetDb *targetDbLoadAllByChar(char *fileName, char chopper) $/;"	f
targetDbLoadAllByTab	hg/inc/targetDb.h	44;"	d
targetDbLookup	hg/lib/targetDb.c	/^struct targetDb *targetDbLookup(char *db, char *name)$/;"	f
targetDbMaybeLoad	hg/lib/targetDb.c	/^struct targetDb *targetDbMaybeLoad(struct sqlConnection *conn, char **row)$/;"	f
targetDbOutput	hg/lib/targetDb.c	/^void targetDbOutput(struct targetDb *el, FILE *f, char sep, char lastSep) $/;"	f
targetDbSetting	hg/lib/targetDb.c	/^char *targetDbSetting(struct targetDb *tdb, char *name)$/;"	f
targetDbStaticLoad	hg/lib/targetDb.c	/^void targetDbStaticLoad(char **row, struct targetDb *ret)$/;"	f
targetDbTabOut	hg/inc/targetDb.h	63;"	d
targetEnd	inc/gff3.h	/^    int targetEnd;$/;"	m	struct:gff3Ann
targetEnd	jkOwnLib/crudeali.c	/^    int targetEnd;$/;"	m	struct:crudeExon	file:
targetEnd	jkOwnLib/crudeali.c	/^    int targetEnd;$/;"	m	struct:crudeGene	file:
targetHits	lib/blastOut.c	/^struct targetHits$/;"	s	file:
targetHitsCmpScore	lib/blastOut.c	/^static int targetHitsCmpScore(const void *va, const void *vb)$/;"	f	file:
targetHitsFree	lib/blastOut.c	/^static void targetHitsFree(struct targetHits **pObj)$/;"	f	file:
targetHitsFreeList	lib/blastOut.c	/^static void targetHitsFreeList(struct targetHits **pList)$/;"	f	file:
targetId	inc/gff3.h	/^    char *targetId; \/* Indicates the target of a nucleotide-to-nucleotide or$/;"	m	struct:gff3Ann
targetIx	lib/pairHmm.c	/^    int targetIx;$/;"	m	struct:phmmAliPair	file:
targetList	hg/inc/snoRNAs.h	/^    char *targetList;	\/* Target RNAs *\/$/;"	m	struct:snoRNAs
targetList	hg/lib/snoRNAs.h	/^    char *targetList;	\/* Target RNAs *\/$/;"	m	struct:snoRNAs
targetName	inc/blastParse.h	/^    char *targetName;                   \/* Name of target sequence. *\/$/;"	m	struct:blastGappedAli
targetOffset	jkOwnLib/crudeali.c	/^    int targetOffset;$/;"	m	struct:crudeHit	file:
targetSeq	hg/inc/rnaHybridization.h	/^    char *targetSeq;	\/* Sequence of target region 3'-5' *\/$/;"	m	struct:rnaHybridization
targetSize	inc/blastParse.h	/^    int targetSize;                     \/* Size of target sequence. *\/$/;"	m	struct:blastGappedAli
targetSize	inc/pairHmm.h	/^    int targetSize;	\/* Size of target. *\/$/;"	m	struct:phmmMatrix
targetStart	inc/gff3.h	/^    int targetStart; \/* target start\/end, in 0-based, half open coordinates *\/$/;"	m	struct:gff3Ann
targetStart	jkOwnLib/crudeali.c	/^    int targetStart;$/;"	m	struct:crudeExon	file:
targetStart	jkOwnLib/crudeali.c	/^    int targetStart;$/;"	m	struct:crudeGene	file:
targetStrand	inc/gff3.h	/^    char *targetStrand; \/* optional target strand, or NULL if none. *\/$/;"	m	struct:gff3Ann
targetSym	lib/pairHmm.c	/^    char targetSym;$/;"	m	struct:phmmAliPair	file:
taxid	hg/inc/megablastInfo.h	/^    unsigned taxid;	\/* Data source *\/$/;"	m	struct:megablastInfo
taxon	hg/inc/goa.h	/^    char *taxon;	\/* Species (sometimes multiple) in form taxon:9606 *\/$/;"	m	struct:goa
taxon	hg/inc/taxonName.h	/^    unsigned taxon;	\/* ncbi id of node associated with this name *\/$/;"	m	struct:taxonName
taxon	hg/inc/taxonNode.h	/^    unsigned taxon;	\/* node id in GenBank taxonomy database *\/$/;"	m	struct:taxonNode
taxon	hg/inc/taxonXref.h	/^    unsigned taxon;	\/* NCBI taxon ID *\/$/;"	m	struct:taxonXref
taxonDivision	hg/inc/taxonDivision.h	/^struct taxonDivision$/;"	s
taxonDivisionCommaIn	hg/lib/taxonDivision.c	/^struct taxonDivision *taxonDivisionCommaIn(char **pS, struct taxonDivision *ret)$/;"	f
taxonDivisionCommaOut	hg/inc/taxonDivision.h	87;"	d
taxonDivisionFree	hg/lib/taxonDivision.c	/^void taxonDivisionFree(struct taxonDivision **pEl)$/;"	f
taxonDivisionFreeList	hg/lib/taxonDivision.c	/^void taxonDivisionFreeList(struct taxonDivision **pList)$/;"	f
taxonDivisionLoad	hg/lib/taxonDivision.c	/^struct taxonDivision *taxonDivisionLoad(char **row)$/;"	f
taxonDivisionLoadAll	hg/lib/taxonDivision.c	/^struct taxonDivision *taxonDivisionLoadAll(char *fileName) $/;"	f
taxonDivisionLoadAllByChar	hg/lib/taxonDivision.c	/^struct taxonDivision *taxonDivisionLoadAllByChar(char *fileName, char chopper) $/;"	f
taxonDivisionLoadAllByTab	hg/inc/taxonDivision.h	40;"	d
taxonDivisionLoadByQuery	hg/lib/taxonDivision.c	/^struct taxonDivision *taxonDivisionLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
taxonDivisionOutput	hg/lib/taxonDivision.c	/^void taxonDivisionOutput(struct taxonDivision *el, FILE *f, char sep, char lastSep) $/;"	f
taxonDivisionSaveToDb	hg/lib/taxonDivision.c	/^void taxonDivisionSaveToDb(struct sqlConnection *conn, struct taxonDivision *el, char *tableName, int updateSize)$/;"	f
taxonDivisionSaveToDbEscaped	hg/lib/taxonDivision.c	/^void taxonDivisionSaveToDbEscaped(struct sqlConnection *conn, struct taxonDivision *el, char *tableName, int updateSize)$/;"	f
taxonDivisionStaticLoad	hg/lib/taxonDivision.c	/^void taxonDivisionStaticLoad(char **row, struct taxonDivision *ret)$/;"	f
taxonDivisionTabOut	hg/inc/taxonDivision.h	84;"	d
taxonGeneticCode	hg/inc/taxonGeneticCode.h	/^struct taxonGeneticCode$/;"	s
taxonGeneticCodeCommaIn	hg/lib/taxonGeneticCode.c	/^struct taxonGeneticCode *taxonGeneticCodeCommaIn(char **pS, struct taxonGeneticCode *ret)$/;"	f
taxonGeneticCodeCommaOut	hg/inc/taxonGeneticCode.h	89;"	d
taxonGeneticCodeFree	hg/lib/taxonGeneticCode.c	/^void taxonGeneticCodeFree(struct taxonGeneticCode **pEl)$/;"	f
taxonGeneticCodeFreeList	hg/lib/taxonGeneticCode.c	/^void taxonGeneticCodeFreeList(struct taxonGeneticCode **pList)$/;"	f
taxonGeneticCodeLoad	hg/lib/taxonGeneticCode.c	/^struct taxonGeneticCode *taxonGeneticCodeLoad(char **row)$/;"	f
taxonGeneticCodeLoadAll	hg/lib/taxonGeneticCode.c	/^struct taxonGeneticCode *taxonGeneticCodeLoadAll(char *fileName) $/;"	f
taxonGeneticCodeLoadAllByChar	hg/lib/taxonGeneticCode.c	/^struct taxonGeneticCode *taxonGeneticCodeLoadAllByChar(char *fileName, char chopper) $/;"	f
taxonGeneticCodeLoadAllByTab	hg/inc/taxonGeneticCode.h	42;"	d
taxonGeneticCodeLoadByQuery	hg/lib/taxonGeneticCode.c	/^struct taxonGeneticCode *taxonGeneticCodeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
taxonGeneticCodeOutput	hg/lib/taxonGeneticCode.c	/^void taxonGeneticCodeOutput(struct taxonGeneticCode *el, FILE *f, char sep, char lastSep) $/;"	f
taxonGeneticCodeSaveToDb	hg/lib/taxonGeneticCode.c	/^void taxonGeneticCodeSaveToDb(struct sqlConnection *conn, struct taxonGeneticCode *el, char *tableName, int updateSize)$/;"	f
taxonGeneticCodeSaveToDbEscaped	hg/lib/taxonGeneticCode.c	/^void taxonGeneticCodeSaveToDbEscaped(struct sqlConnection *conn, struct taxonGeneticCode *el, char *tableName, int updateSize)$/;"	f
taxonGeneticCodeStaticLoad	hg/lib/taxonGeneticCode.c	/^void taxonGeneticCodeStaticLoad(char **row, struct taxonGeneticCode *ret)$/;"	f
taxonGeneticCodeTabOut	hg/inc/taxonGeneticCode.h	86;"	d
taxonName	hg/inc/taxonName.h	/^struct taxonName$/;"	s
taxonNameCommaIn	hg/lib/taxonName.c	/^struct taxonName *taxonNameCommaIn(char **pS, struct taxonName *ret)$/;"	f
taxonNameCommaOut	hg/inc/taxonName.h	86;"	d
taxonNameFree	hg/lib/taxonName.c	/^void taxonNameFree(struct taxonName **pEl)$/;"	f
taxonNameFreeList	hg/lib/taxonName.c	/^void taxonNameFreeList(struct taxonName **pList)$/;"	f
taxonNameLoad	hg/lib/taxonName.c	/^struct taxonName *taxonNameLoad(char **row)$/;"	f
taxonNameLoadAll	hg/lib/taxonName.c	/^struct taxonName *taxonNameLoadAll(char *fileName) $/;"	f
taxonNameLoadAllByChar	hg/lib/taxonName.c	/^struct taxonName *taxonNameLoadAllByChar(char *fileName, char chopper) $/;"	f
taxonNameLoadAllByTab	hg/inc/taxonName.h	39;"	d
taxonNameLoadByQuery	hg/lib/taxonName.c	/^struct taxonName *taxonNameLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
taxonNameOutput	hg/lib/taxonName.c	/^void taxonNameOutput(struct taxonName *el, FILE *f, char sep, char lastSep) $/;"	f
taxonNameSaveToDb	hg/lib/taxonName.c	/^void taxonNameSaveToDb(struct sqlConnection *conn, struct taxonName *el, char *tableName, int updateSize)$/;"	f
taxonNameSaveToDbEscaped	hg/lib/taxonName.c	/^void taxonNameSaveToDbEscaped(struct sqlConnection *conn, struct taxonName *el, char *tableName, int updateSize)$/;"	f
taxonNameStaticLoad	hg/lib/taxonName.c	/^void taxonNameStaticLoad(char **row, struct taxonName *ret)$/;"	f
taxonNameTabOut	hg/inc/taxonName.h	83;"	d
taxonNode	hg/inc/taxonNode.h	/^struct taxonNode$/;"	s
taxonNodeCommaIn	hg/lib/taxonNode.c	/^struct taxonNode *taxonNodeCommaIn(char **pS, struct taxonNode *ret)$/;"	f
taxonNodeCommaOut	hg/inc/taxonNode.h	96;"	d
taxonNodeFree	hg/lib/taxonNode.c	/^void taxonNodeFree(struct taxonNode **pEl)$/;"	f
taxonNodeFreeList	hg/lib/taxonNode.c	/^void taxonNodeFreeList(struct taxonNode **pList)$/;"	f
taxonNodeLoad	hg/lib/taxonNode.c	/^struct taxonNode *taxonNodeLoad(char **row)$/;"	f
taxonNodeLoadAll	hg/lib/taxonNode.c	/^struct taxonNode *taxonNodeLoadAll(char *fileName) $/;"	f
taxonNodeLoadAllByChar	hg/lib/taxonNode.c	/^struct taxonNode *taxonNodeLoadAllByChar(char *fileName, char chopper) $/;"	f
taxonNodeLoadAllByTab	hg/inc/taxonNode.h	49;"	d
taxonNodeLoadByQuery	hg/lib/taxonNode.c	/^struct taxonNode *taxonNodeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
taxonNodeOutput	hg/lib/taxonNode.c	/^void taxonNodeOutput(struct taxonNode *el, FILE *f, char sep, char lastSep) $/;"	f
taxonNodeSaveToDb	hg/lib/taxonNode.c	/^void taxonNodeSaveToDb(struct sqlConnection *conn, struct taxonNode *el, char *tableName, int updateSize)$/;"	f
taxonNodeSaveToDbEscaped	hg/lib/taxonNode.c	/^void taxonNodeSaveToDbEscaped(struct sqlConnection *conn, struct taxonNode *el, char *tableName, int updateSize)$/;"	f
taxonNodeStaticLoad	hg/lib/taxonNode.c	/^void taxonNodeStaticLoad(char **row, struct taxonNode *ret)$/;"	f
taxonNodeTabOut	hg/inc/taxonNode.h	93;"	d
taxonXref	hg/inc/taxonXref.h	/^struct taxonXref$/;"	s
taxonXrefCommaIn	hg/lib/taxonXref.c	/^struct taxonXref *taxonXrefCommaIn(char **pS, struct taxonXref *ret)$/;"	f
taxonXrefCommaOut	hg/inc/taxonXref.h	87;"	d
taxonXrefFree	hg/lib/taxonXref.c	/^void taxonXrefFree(struct taxonXref **pEl)$/;"	f
taxonXrefFreeList	hg/lib/taxonXref.c	/^void taxonXrefFreeList(struct taxonXref **pList)$/;"	f
taxonXrefLoad	hg/lib/taxonXref.c	/^struct taxonXref *taxonXrefLoad(char **row)$/;"	f
taxonXrefLoadAll	hg/lib/taxonXref.c	/^struct taxonXref *taxonXrefLoadAll(char *fileName) $/;"	f
taxonXrefLoadAllByChar	hg/lib/taxonXref.c	/^struct taxonXref *taxonXrefLoadAllByChar(char *fileName, char chopper) $/;"	f
taxonXrefLoadAllByTab	hg/inc/taxonXref.h	40;"	d
taxonXrefLoadByQuery	hg/lib/taxonXref.c	/^struct taxonXref *taxonXrefLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
taxonXrefOutput	hg/lib/taxonXref.c	/^void taxonXrefOutput(struct taxonXref *el, FILE *f, char sep, char lastSep) $/;"	f
taxonXrefSaveToDb	hg/lib/taxonXref.c	/^void taxonXrefSaveToDb(struct sqlConnection *conn, struct taxonXref *el, char *tableName, int updateSize)$/;"	f
taxonXrefSaveToDbEscaped	hg/lib/taxonXref.c	/^void taxonXrefSaveToDbEscaped(struct sqlConnection *conn, struct taxonXref *el, char *tableName, int updateSize)$/;"	f
taxonXrefStaticLoad	hg/lib/taxonXref.c	/^void taxonXrefStaticLoad(char **row, struct taxonXref *ret)$/;"	f
taxonXrefTabOut	hg/inc/taxonXref.h	84;"	d
tbf	inc/annoGratorQuery.h	/^    struct twoBitFile *tbf;		\/\/ Assembly sequence, must be valid for all inputs$/;"	m	struct:annoGratorQuery	typeref:struct:annoGratorQuery::twoBitFile
tbf	inc/nibTwo.h	/^    struct twoBitFile *tbf;	\/* Two bit file handle if any. *\/$/;"	m	struct:nibTwoCache	typeref:struct:nibTwoCache::twoBitFile
tbi	lib/dnaLoad.c	/^    struct twoBitIndex *tbi;	 \/* Next twoBit sequence. *\/$/;"	m	struct:dnaLoadStack	typeref:struct:dnaLoadStack::twoBitIndex	file:
tblName	hg/inc/wiggle.h	/^    char *tblName;		\/*	the table or file name	*\/$/;"	m	struct:wiggleDataStream
tdCount	lib/htmlPage.c	/^    int tdCount;$/;"	m	struct:htmlTableRow	file:
tdb	hg/inc/customTrack.h	/^    struct trackDb *tdb;	\/* TrackDb description of track. *\/$/;"	m	struct:customTrack	typeref:struct:customTrack::trackDb
tdb	hg/inc/hui.h	/^    struct trackDb *tdb;        \/\/ a contained item is actually a tdb entry$/;"	m	struct:_sortableTdbItem	typeref:struct:_sortableTdbItem::trackDb
tdbAddPrioritiesFromCart	hg/lib/hui.c	/^boolean tdbAddPrioritiesFromCart(struct cart *cart, struct trackDb *tdbList)$/;"	f
tdbBigFileName	hg/lib/trackDbCustom.c	/^char *tdbBigFileName(struct sqlConnection *conn, struct trackDb *tdb)$/;"	f
tdbExtras	hg/inc/trackDb.h	/^    struct tdbExtras *tdbExtras;\/* This struct allows storing extra values which may be used multiple times within a single cgi$/;"	m	struct:trackDb	typeref:struct:trackDb::tdbExtras
tdbExtras	hg/inc/trackDb.h	/^struct tdbExtras$/;"	s
tdbExtrasFourState	hg/lib/trackDbCustom.c	/^int tdbExtrasFourState(struct trackDb *tdb)$/;"	f
tdbExtrasFourStateSet	hg/lib/trackDbCustom.c	/^void tdbExtrasFourStateSet(struct trackDb *tdb,int fourState)$/;"	f
tdbExtrasFree	hg/lib/trackDbCustom.c	/^void tdbExtrasFree(struct tdbExtras **pTdbExtras)$/;"	f
tdbExtrasGet	hg/lib/trackDbCustom.c	/^static struct tdbExtras *tdbExtrasGet(struct trackDb *tdb)$/;"	f	file:
tdbExtrasMdb	hg/lib/trackDbCustom.c	/^struct mdbObj *tdbExtrasMdb(struct trackDb *tdb)$/;"	f
tdbExtrasMdbSet	hg/lib/trackDbCustom.c	/^void tdbExtrasMdbSet(struct trackDb *tdb,struct mdbObj *mdb)$/;"	f
tdbExtrasMembersForAll	hg/lib/trackDbCustom.c	/^struct _membersForAll *tdbExtrasMembersForAll(struct trackDb *tdb)$/;"	f
tdbExtrasMembersForAllSet	hg/lib/trackDbCustom.c	/^void tdbExtrasMembersForAllSet(struct trackDb *tdb, struct _membersForAll *membersForAll)$/;"	f
tdbExtrasMembership	hg/lib/trackDbCustom.c	/^struct _membership *tdbExtrasMembership(struct trackDb *tdb)$/;"	f
tdbExtrasMembershipSet	hg/lib/trackDbCustom.c	/^void tdbExtrasMembershipSet(struct trackDb *tdb,struct _membership *membership)$/;"	f
tdbExtrasNew	hg/lib/trackDbCustom.c	/^static struct tdbExtras *tdbExtrasNew()$/;"	f	file:
tdbExtrasReshapedComposite	hg/lib/trackDbCustom.c	/^boolean tdbExtrasReshapedComposite(struct trackDb *tdb)$/;"	f
tdbExtrasReshapedCompositeSet	hg/lib/trackDbCustom.c	/^void tdbExtrasReshapedCompositeSet(struct trackDb *tdb)$/;"	f
tdbFillInAncestry	hg/lib/trackDbCustom.c	/^struct trackDb *tdbFillInAncestry(char *db,struct trackDb *tdbChild)$/;"	f
tdbFindOrCreate	hg/lib/trackDbCustom.c	/^struct trackDb *tdbFindOrCreate(char *db,struct trackDb *parent,char *track)$/;"	f
tdbForTrack	hg/lib/hdb.c	/^struct trackDb *tdbForTrack(char *db, char *track,struct trackDb **tdbList)$/;"	f
tdbGetComposite	hg/inc/trackDb.h	/^INLINE struct trackDb *tdbGetComposite(struct trackDb *tdb)$/;"	f
tdbGetContainer	hg/inc/trackDb.h	/^INLINE struct trackDb *tdbGetContainer(struct trackDb *tdb)$/;"	f
tdbGetImmediateFolder	hg/inc/trackDb.h	/^INLINE struct trackDb *tdbGetImmediateFolder(struct trackDb *tdb)$/;"	f
tdbGetMultiTrack	hg/inc/trackDb.h	/^INLINE struct trackDb *tdbGetMultiTrack(struct trackDb *tdb)$/;"	f
tdbGetSuperTrack	hg/inc/trackDb.h	144;"	d
tdbGetViewName	hg/lib/trackDbCustom.c	/^char *tdbGetViewName(struct trackDb *tdb)$/;"	f
tdbIsBam	hg/inc/trackDb.h	/^INLINE boolean tdbIsBam(struct trackDb *tdb)$/;"	f
tdbIsBigBed	hg/inc/trackDb.h	/^INLINE boolean tdbIsBigBed(struct trackDb *tdb)$/;"	f
tdbIsBigWig	hg/inc/trackDb.h	/^INLINE boolean tdbIsBigWig(struct trackDb *tdb)$/;"	f
tdbIsComposite	hg/inc/trackDb.h	/^INLINE boolean tdbIsComposite( struct trackDb *tdb)$/;"	f
tdbIsCompositeChild	hg/inc/trackDb.h	/^INLINE boolean tdbIsCompositeChild(struct trackDb *tdb)$/;"	f
tdbIsCompositeSubtrack	hg/inc/trackDb.h	184;"	d
tdbIsCompositeView	hg/inc/trackDb.h	/^INLINE boolean tdbIsCompositeView(struct trackDb *tdb)$/;"	f
tdbIsContainer	hg/inc/trackDb.h	/^INLINE boolean tdbIsContainer( struct trackDb *tdb)$/;"	f
tdbIsContainerChild	hg/inc/trackDb.h	/^INLINE boolean tdbIsContainerChild(struct trackDb *tdb)$/;"	f
tdbIsDataTrack	hg/inc/trackDb.h	263;"	d
tdbIsDownloadsOnly	hg/inc/trackDb.h	/^INLINE boolean tdbIsDownloadsOnly(struct trackDb *tdb)$/;"	f
tdbIsFolder	hg/inc/trackDb.h	/^INLINE boolean tdbIsFolder(struct trackDb *tdb)$/;"	f
tdbIsFolderContent	hg/inc/trackDb.h	/^INLINE boolean tdbIsFolderContent(struct trackDb *tdb)$/;"	f
tdbIsMultiTrack	hg/inc/trackDb.h	/^INLINE boolean tdbIsMultiTrack( struct trackDb *tdb)$/;"	f
tdbIsMultiTrackChild	hg/inc/trackDb.h	/^INLINE boolean tdbIsMultiTrackChild(struct trackDb *tdb)$/;"	f
tdbIsMultiTrackSubtrack	hg/inc/trackDb.h	221;"	d
tdbIsSoloTrack	hg/inc/trackDb.h	/^INLINE boolean tdbIsSoloTrack(struct trackDb *tdb)$/;"	f
tdbIsStandAlone	hg/inc/trackDb.h	262;"	d
tdbIsSubtrack	hg/inc/trackDb.h	245;"	d
tdbIsSuper	hg/inc/trackDb.h	126;"	d
tdbIsSuperTrack	hg/inc/trackDb.h	127;"	d
tdbIsSuperTrackChild	hg/inc/trackDb.h	134;"	d
tdbIsTrackUiTopLevel	hg/inc/trackDb.h	267;"	d
tdbIsVcf	hg/inc/trackDb.h	/^INLINE boolean tdbIsVcf(struct trackDb *tdb)$/;"	f
tdbIsView	hg/lib/trackDbCustom.c	/^boolean tdbIsView(struct trackDb *tdb,char **viewName)$/;"	f
tdbLocalVisibility	hg/lib/hui.c	/^enum trackVisibility tdbLocalVisibility(struct cart *cart, struct trackDb *tdb,boolean *subtrackOverride)$/;"	f
tdbMarkAsComposite	hg/inc/trackDb.h	/^INLINE void tdbMarkAsComposite( struct trackDb *tdb)$/;"	f
tdbMarkAsCompositeChild	hg/inc/trackDb.h	/^INLINE void tdbMarkAsCompositeChild( struct trackDb *tdb)$/;"	f
tdbMarkAsCompositeSubtrack	hg/inc/trackDb.h	165;"	d
tdbMarkAsCompositeView	hg/inc/trackDb.h	/^INLINE void tdbMarkAsCompositeView( struct trackDb *tdb)$/;"	f
tdbMarkAsFolder	hg/inc/trackDb.h	/^INLINE void tdbMarkAsFolder(struct trackDb *tdb)$/;"	f
tdbMarkAsFolderChild	hg/inc/trackDb.h	/^INLINE void tdbMarkAsFolderChild(struct trackDb *tdb)$/;"	f
tdbMarkAsMultiTrack	hg/inc/trackDb.h	/^INLINE void tdbMarkAsMultiTrack( struct trackDb *tdb)$/;"	f
tdbMarkAsMultiTrackChild	hg/inc/trackDb.h	/^INLINE void tdbMarkAsMultiTrackChild( struct trackDb *tdb)$/;"	f
tdbMarkAsMultiTrackSubtrack	hg/inc/trackDb.h	208;"	d
tdbMarkAsSuperTrack	hg/inc/trackDb.h	112;"	d
tdbMarkAsSuperTrackChild	hg/inc/trackDb.h	119;"	d
tdbOrCartBoolean	hg/lib/hui.c	/^static boolean tdbOrCartBoolean(struct cart *cart, struct trackDb *tdb,$/;"	f	file:
tdbRefSortPrioritiesFromCart	hg/lib/hui.c	/^boolean tdbRefSortPrioritiesFromCart(struct cart *cart, struct slRef **tdbRefList)$/;"	f
tdbSetCartVisibility	hg/lib/trackDbCustom.c	/^void tdbSetCartVisibility(struct trackDb *tdb, struct cart *cart, char *vis)$/;"	f
tdbSortPrioritiesFromCart	hg/lib/hui.c	/^boolean tdbSortPrioritiesFromCart(struct cart *cart, struct trackDb **tdbList)$/;"	f
tdbVisLimitedByAncestors	hg/lib/hui.c	/^enum trackVisibility tdbVisLimitedByAncestors(struct cart *cart, struct trackDb *tdb, boolean checkBoxToo, boolean foldersToo)$/;"	f
tdbVisLimitedByAncestry	hg/inc/hui.h	983;"	d
tempDir	inc/gfWebLib.h	/^    char *tempDir;	\/* Where to put temporary files. *\/$/;"	m	struct:gfWebConfig
tempEntry	inc/diGraph.h	/^    struct dgNode *tempEntry;  \/* Way in for breadth first search *\/$/;"	m	struct:dgNode	typeref:struct:dgNode::dgNode
tempF	hg/lib/rangeTreeFile.c	/^static FILE *tempF = NULL;$/;"	v	file:
tempFuncRangeValSize	hg/lib/rangeTreeFile.c	/^static int (*tempFuncRangeValSize)(void *val) = NULL;$/;"	v	file:
tempFuncWriteNodesWithVal	hg/lib/rangeTreeFile.c	/^static void (*tempFuncWriteNodesWithVal)(void *val, FILE *f) = NULL;$/;"	v	file:
tempName	inc/portable.h	/^struct tempName$/;"	s
tempValSize	hg/lib/rangeTreeFile.c	/^static int tempValSize = 0;$/;"	v	file:
templateId	hg/inc/traceInfo.h	/^    char *templateId;	\/* Name of the template *\/$/;"	m	struct:traceInfo
termRegex	hg/inc/hgFindSpec.h	/^    char *termRegex;	\/* Regular expression (see man 7 regex) to eval on search term: if it matches, perform search query. *\/$/;"	m	struct:hgFindSpec
terminal	hg/inc/chromInserts.h	/^    struct bigInsert *terminal;   \/* Insert to finish chromosome with or NULL. *\/$/;"	m	struct:chromInserts	typeref:struct:chromInserts::bigInsert
testBoxLump	lib/boxLump.c	/^void testBoxLump()$/;"	f
testCount	inc/qa.h	/^    int testCount;	\/* Number of tests. *\/$/;"	m	struct:qaStatistics
testData	lib/boxLump.c	/^int testData[][4] = $/;"	v
testFileSettings	hg/lib/customFactory.c	/^static boolean testFileSettings(struct trackDb *tdb, char *ctFileName)$/;"	f	file:
testResult	hg/inc/genomicSuperDups.h	/^    char *testResult;	\/* HitPositive (yes or no) UnCovered (covered=0) *\/$/;"	m	struct:genomicSuperDups
text	hg/inc/fbTables.h	/^    char *text;	\/* Descriptive text *\/$/;"	m	struct:fbPhenotype
text	hg/inc/fbTables.h	/^    char *text;	\/* Descriptive text *\/$/;"	m	struct:fbRole
text	hg/inc/fbTables.h	/^    char *text;	\/* Usually begins with flybase ref ID, but not always *\/$/;"	m	struct:fbRef
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenAccession
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenAltid
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenAnnotator
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenAnntext
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenCloneid
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenComment
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenDatasrc
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenEvidence
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenFantomid
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenModifiedTime
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenQualifier
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenRearrayid
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenRepresentativeSeqid
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenSeqid
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenSrckey
text	hg/inc/riken.h	/^    char *text;$/;"	m	struct:rikenVersion
text	inc/maf.h	/^    char *text;  \/* The sequence including dashes. *\/$/;"	m	struct:mafComp
text	inc/vGfx.h	/^    void (*text)(void *v, int x, int y, int colorIx, void *font, char *text);$/;"	m	struct:vGfx
text	inc/xap.h	/^   struct dyString *text;	\/* The text section. *\/$/;"	m	struct:xapStack	typeref:struct:xapStack::dyString
text	inc/xp.h	/^    struct dyString *text;  \/* Contains text if any. *\/$/;"	m	struct:xpStack	typeref:struct:xpStack::dyString
textCentered	inc/vGfx.h	/^    void (*textCentered)(void *v, int x, int y, int width, int height,$/;"	m	struct:vGfx
textFile	lib/dnaLoad.c	/^    struct lineFile *textFile;	\/* Text file if any. *\/$/;"	m	struct:dnaLoadStack	typeref:struct:dnaLoadStack::lineFile	file:
textIsFa	lib/dnaLoad.c	/^    boolean textIsFa;		\/* True if text is in fasta format. *\/$/;"	m	struct:dnaLoadStack	file:
textOutAbortHandler	lib/textOut.c	/^static void textOutAbortHandler()$/;"	f	file:
textOutClose	lib/textOut.c	/^void textOutClose(struct pipeline **pCompressPipeline)$/;"	f
textOutCompressBzip2	inc/textOut.h	10;"	d
textOutCompressCompress	inc/textOut.h	11;"	d
textOutCompressGzip	inc/textOut.h	12;"	d
textOutCompressMenuContents	inc/textOut.h	18;"	d
textOutCompressNone	inc/textOut.h	9;"	d
textOutCompressValuesContents	inc/textOut.h	26;"	d
textOutCompressZip	inc/textOut.h	13;"	d
textOutInit	lib/textOut.c	/^struct pipeline *textOutInit(char *fileName, char *compressType)$/;"	f
textOutWarnHandler	lib/textOut.c	/^static void textOutWarnHandler(char *format, va_list args)$/;"	f	file:
textRight	inc/vGfx.h	/^    void (*textRight)(void *v, int x, int y, int width, int height,$/;"	m	struct:vGfx
textSize	hg/inc/trackLayout.h	/^    char *textSize;		\/* Symbolic name of text size. *\/$/;"	m	struct:trackLayout
textSize	inc/maf.h	/^    int textSize;         \/* Size of text in each component. *\/$/;"	m	struct:mafAli
textSizeVar	hg/inc/trackLayout.h	33;"	d
textType	inc/dtdParse.h	/^    char *textType;		\/* Text between tags if any. *\/$/;"	m	struct:dtdElement
textVaWarn	hg/lib/web.c	/^void textVaWarn(char *format, va_list args)$/;"	f
tfCount	hg/inc/transRegCodeProbe.h	/^    unsigned tfCount;	\/* Count of bound transcription factors_conditions *\/$/;"	m	struct:transRegCodeProbe
tfList	hg/inc/transRegCodeProbe.h	/^    char **tfList;	\/* List of bound transcription factors_conditions *\/$/;"	m	struct:transRegCodeProbe
tfbsCons	hg/inc/tfbsCons.h	/^struct tfbsCons$/;"	s
tfbsConsCommaIn	hg/lib/tfbsCons.c	/^struct tfbsCons *tfbsConsCommaIn(char **pS, struct tfbsCons *ret)$/;"	f
tfbsConsCommaOut	hg/inc/tfbsCons.h	92;"	d
tfbsConsFactors	hg/inc/tfbsConsFactors.h	/^struct tfbsConsFactors$/;"	s
tfbsConsFactorsCommaIn	hg/lib/tfbsConsFactors.c	/^struct tfbsConsFactors *tfbsConsFactorsCommaIn(char **pS, struct tfbsConsFactors *ret)$/;"	f
tfbsConsFactorsCommaOut	hg/inc/tfbsConsFactors.h	59;"	d
tfbsConsFactorsFree	hg/lib/tfbsConsFactors.c	/^void tfbsConsFactorsFree(struct tfbsConsFactors **pEl)$/;"	f
tfbsConsFactorsFreeList	hg/lib/tfbsConsFactors.c	/^void tfbsConsFactorsFreeList(struct tfbsConsFactors **pList)$/;"	f
tfbsConsFactorsLoad	hg/lib/tfbsConsFactors.c	/^struct tfbsConsFactors *tfbsConsFactorsLoad(char **row)$/;"	f
tfbsConsFactorsLoadAll	hg/lib/tfbsConsFactors.c	/^struct tfbsConsFactors *tfbsConsFactorsLoadAll(char *fileName) $/;"	f
tfbsConsFactorsLoadAllByChar	hg/lib/tfbsConsFactors.c	/^struct tfbsConsFactors *tfbsConsFactorsLoadAllByChar(char *fileName, char chopper) $/;"	f
tfbsConsFactorsLoadAllByTab	hg/inc/tfbsConsFactors.h	37;"	d
tfbsConsFactorsOutput	hg/lib/tfbsConsFactors.c	/^void tfbsConsFactorsOutput(struct tfbsConsFactors *el, FILE *f, char sep, char lastSep) $/;"	f
tfbsConsFactorsStaticLoad	hg/lib/tfbsConsFactors.c	/^void tfbsConsFactorsStaticLoad(char **row, struct tfbsConsFactors *ret)$/;"	f
tfbsConsFactorsTabOut	hg/inc/tfbsConsFactors.h	56;"	d
tfbsConsFree	hg/lib/tfbsCons.c	/^void tfbsConsFree(struct tfbsCons **pEl)$/;"	f
tfbsConsFreeList	hg/lib/tfbsCons.c	/^void tfbsConsFreeList(struct tfbsCons **pList)$/;"	f
tfbsConsLoad	hg/lib/tfbsCons.c	/^struct tfbsCons *tfbsConsLoad(char **row)$/;"	f
tfbsConsLoadAll	hg/lib/tfbsCons.c	/^struct tfbsCons *tfbsConsLoadAll(char *fileName) $/;"	f
tfbsConsLoadAllByChar	hg/lib/tfbsCons.c	/^struct tfbsCons *tfbsConsLoadAllByChar(char *fileName, char chopper) $/;"	f
tfbsConsLoadAllByTab	hg/inc/tfbsCons.h	45;"	d
tfbsConsLoadByQuery	hg/lib/tfbsCons.c	/^struct tfbsCons *tfbsConsLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
tfbsConsMap	hg/inc/tfbsConsMap.h	/^struct tfbsConsMap$/;"	s
tfbsConsMapCommaIn	hg/lib/tfbsConsMap.c	/^struct tfbsConsMap *tfbsConsMapCommaIn(char **pS, struct tfbsConsMap *ret)$/;"	f
tfbsConsMapCommaOut	hg/inc/tfbsConsMap.h	85;"	d
tfbsConsMapFree	hg/lib/tfbsConsMap.c	/^void tfbsConsMapFree(struct tfbsConsMap **pEl)$/;"	f
tfbsConsMapFreeList	hg/lib/tfbsConsMap.c	/^void tfbsConsMapFreeList(struct tfbsConsMap **pList)$/;"	f
tfbsConsMapLoad	hg/lib/tfbsConsMap.c	/^struct tfbsConsMap *tfbsConsMapLoad(char **row)$/;"	f
tfbsConsMapLoadAll	hg/lib/tfbsConsMap.c	/^struct tfbsConsMap *tfbsConsMapLoadAll(char *fileName) $/;"	f
tfbsConsMapLoadAllByChar	hg/lib/tfbsConsMap.c	/^struct tfbsConsMap *tfbsConsMapLoadAllByChar(char *fileName, char chopper) $/;"	f
tfbsConsMapLoadAllByTab	hg/inc/tfbsConsMap.h	38;"	d
tfbsConsMapLoadByQuery	hg/lib/tfbsConsMap.c	/^struct tfbsConsMap *tfbsConsMapLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
tfbsConsMapOutput	hg/lib/tfbsConsMap.c	/^void tfbsConsMapOutput(struct tfbsConsMap *el, FILE *f, char sep, char lastSep) $/;"	f
tfbsConsMapSaveToDb	hg/lib/tfbsConsMap.c	/^void tfbsConsMapSaveToDb(struct sqlConnection *conn, struct tfbsConsMap *el, char *tableName, int updateSize)$/;"	f
tfbsConsMapSaveToDbEscaped	hg/lib/tfbsConsMap.c	/^void tfbsConsMapSaveToDbEscaped(struct sqlConnection *conn, struct tfbsConsMap *el, char *tableName, int updateSize)$/;"	f
tfbsConsMapStaticLoad	hg/lib/tfbsConsMap.c	/^void tfbsConsMapStaticLoad(char **row, struct tfbsConsMap *ret)$/;"	f
tfbsConsMapTabOut	hg/inc/tfbsConsMap.h	82;"	d
tfbsConsOutput	hg/lib/tfbsCons.c	/^void tfbsConsOutput(struct tfbsCons *el, FILE *f, char sep, char lastSep) $/;"	f
tfbsConsSaveToDb	hg/lib/tfbsCons.c	/^void tfbsConsSaveToDb(struct sqlConnection *conn, struct tfbsCons *el, char *tableName, int updateSize)$/;"	f
tfbsConsSaveToDbEscaped	hg/lib/tfbsCons.c	/^void tfbsConsSaveToDbEscaped(struct sqlConnection *conn, struct tfbsCons *el, char *tableName, int updateSize)$/;"	f
tfbsConsSites	hg/inc/tfbsConsSites.h	/^struct tfbsConsSites$/;"	s
tfbsConsSitesCommaIn	hg/lib/tfbsConsSites.c	/^struct tfbsConsSites *tfbsConsSitesCommaIn(char **pS, struct tfbsConsSites *ret)$/;"	f
tfbsConsSitesCommaOut	hg/inc/tfbsConsSites.h	61;"	d
tfbsConsSitesFree	hg/lib/tfbsConsSites.c	/^void tfbsConsSitesFree(struct tfbsConsSites **pEl)$/;"	f
tfbsConsSitesFreeList	hg/lib/tfbsConsSites.c	/^void tfbsConsSitesFreeList(struct tfbsConsSites **pList)$/;"	f
tfbsConsSitesLoad	hg/lib/tfbsConsSites.c	/^struct tfbsConsSites *tfbsConsSitesLoad(char **row)$/;"	f
tfbsConsSitesLoadAll	hg/lib/tfbsConsSites.c	/^struct tfbsConsSites *tfbsConsSitesLoadAll(char *fileName) $/;"	f
tfbsConsSitesLoadAllByChar	hg/lib/tfbsConsSites.c	/^struct tfbsConsSites *tfbsConsSitesLoadAllByChar(char *fileName, char chopper) $/;"	f
tfbsConsSitesLoadAllByTab	hg/inc/tfbsConsSites.h	39;"	d
tfbsConsSitesOutput	hg/lib/tfbsConsSites.c	/^void tfbsConsSitesOutput(struct tfbsConsSites *el, FILE *f, char sep, char lastSep) $/;"	f
tfbsConsSitesStaticLoad	hg/lib/tfbsConsSites.c	/^void tfbsConsSitesStaticLoad(char **row, struct tfbsConsSites *ret)$/;"	f
tfbsConsSitesTabOut	hg/inc/tfbsConsSites.h	58;"	d
tfbsConsStaticLoad	hg/lib/tfbsCons.c	/^void tfbsConsStaticLoad(char **row, struct tfbsCons *ret)$/;"	f
tfbsConsTabOut	hg/inc/tfbsCons.h	89;"	d
tgId	hg/inc/mcnBreakpoints.h	/^    char *tgId;	\/* MCN Traitgroup ID *\/$/;"	m	struct:mcnBreakpoints
tgTxt	hg/inc/mcnBreakpoints.h	/^    char *tgTxt;	\/* MCN Traitgroup Name *\/$/;"	m	struct:mcnBreakpoints
thckning	lib/gemfont.h	/^WORD	thckning;$/;"	m	struct:font_hdr
theInt	lib/gemfont.c	/^    int  theInt;$/;"	m	union:__anon1	file:
thickEnd	hg/inc/bed12Source.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:bed12Source
thickEnd	hg/inc/bed12wSeq.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:bed12wSeq
thickEnd	hg/inc/bed8Attrs.h	/^    unsigned thickEnd;	\/* End of where display should be thick *\/$/;"	m	struct:bed8Attrs
thickEnd	hg/inc/bedDetail.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:bedDetail
thickEnd	hg/inc/blastzNet.h	/^    unsigned thickEnd;	\/* End on Human *\/$/;"	m	struct:blastzNet
thickEnd	hg/inc/delConrad2.h	/^    unsigned thickEnd;	\/* Max end (can be different from chromEnd) *\/$/;"	m	struct:delConrad2
thickEnd	hg/inc/dgv.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:dgv
thickEnd	hg/inc/humanParalog.h	/^    unsigned thickEnd;	\/* End on Human *\/$/;"	m	struct:humanParalog
thickEnd	hg/inc/jaxQTL2.h	/^    unsigned thickEnd;	\/* start of thick region *\/$/;"	m	struct:jaxQTL2
thickEnd	hg/inc/jaxQTL3.h	/^    unsigned thickEnd;	\/* start of thick region *\/$/;"	m	struct:jaxQTL3
thickEnd	hg/inc/makeItemsItem.h	/^    unsigned thickEnd;	\/* End position of thick part *\/$/;"	m	struct:makeItemsItem
thickEnd	hg/inc/mammalPsg.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:mammalPsg
thickEnd	hg/inc/mouseOrtho.h	/^    unsigned thickEnd;	\/* End on Human *\/$/;"	m	struct:mouseOrtho
thickEnd	hg/inc/ncRna.h	/^    unsigned thickEnd;	\/* unused *\/$/;"	m	struct:ncRna
thickEnd	hg/inc/pseudoGeneLink.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:pseudoGeneLink
thickEnd	hg/inc/retroMrnaInfo.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:retroMrnaInfo
thickEnd	hg/inc/ucscRetroInfo.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:ucscRetroInfo
thickEnd	hg/inc/wgRna.h	/^    unsigned thickEnd;	\/* start of thick region *\/$/;"	m	struct:wgRna
thickEnd	hg/inc/zdobnovSynt.h	/^    unsigned thickEnd;	\/* End of where display should be thick (stop codon) *\/$/;"	m	struct:zdobnovSynt
thickEnd	inc/basicBed.h	/^    unsigned thickEnd;   \/* End of where display should be thick (stop codon for genes) *\/$/;"	m	struct:bed
thickEndFilter	hg/inc/bed.h	/^    enum numericFilterType thickEndFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
thickEndVals	hg/inc/bed.h	/^    int *thickEndVals;$/;"	m	struct:bedFilter
thickLengthFilter	hg/inc/bed.h	/^    enum numericFilterType thickLengthFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
thickLengthVals	hg/inc/bed.h	/^    int *thickLengthVals;$/;"	m	struct:bedFilter
thickStart	hg/inc/bed12Source.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:bed12Source
thickStart	hg/inc/bed12wSeq.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:bed12wSeq
thickStart	hg/inc/bed8Attrs.h	/^    unsigned thickStart;	\/* Start of where display should be thick *\/$/;"	m	struct:bed8Attrs
thickStart	hg/inc/bedDetail.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:bedDetail
thickStart	hg/inc/blastzNet.h	/^    unsigned thickStart;	\/* Start on Human *\/$/;"	m	struct:blastzNet
thickStart	hg/inc/delConrad2.h	/^    unsigned thickStart;	\/* Max start (can be different from chromStart) *\/$/;"	m	struct:delConrad2
thickStart	hg/inc/dgv.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:dgv
thickStart	hg/inc/humanParalog.h	/^    unsigned thickStart;	\/* Start on Human *\/$/;"	m	struct:humanParalog
thickStart	hg/inc/jaxQTL2.h	/^    unsigned thickStart;	\/* start of thick region *\/$/;"	m	struct:jaxQTL2
thickStart	hg/inc/jaxQTL3.h	/^    unsigned thickStart;	\/* start of thick region *\/$/;"	m	struct:jaxQTL3
thickStart	hg/inc/makeItemsItem.h	/^    unsigned thickStart;	\/* Start of thick part *\/$/;"	m	struct:makeItemsItem
thickStart	hg/inc/mammalPsg.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:mammalPsg
thickStart	hg/inc/mouseOrtho.h	/^    unsigned thickStart;	\/* Start on Human *\/$/;"	m	struct:mouseOrtho
thickStart	hg/inc/ncRna.h	/^    unsigned thickStart;	\/* unused *\/$/;"	m	struct:ncRna
thickStart	hg/inc/pseudoGeneLink.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:pseudoGeneLink
thickStart	hg/inc/retroMrnaInfo.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:retroMrnaInfo
thickStart	hg/inc/ucscRetroInfo.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:ucscRetroInfo
thickStart	hg/inc/wgRna.h	/^    unsigned thickStart;	\/* start of thick region *\/$/;"	m	struct:wgRna
thickStart	hg/inc/zdobnovSynt.h	/^    unsigned thickStart;	\/* Start of where display should be thick (start codon) *\/$/;"	m	struct:zdobnovSynt
thickStart	inc/basicBed.h	/^    unsigned thickStart; \/* Start of where display should be thick (start codon for genes) *\/$/;"	m	struct:bed
thickStartFilter	hg/inc/bed.h	/^    enum numericFilterType thickStartFilter;$/;"	m	struct:bedFilter	typeref:enum:bedFilter::numericFilterType
thickStartVals	hg/inc/bed.h	/^    int *thickStartVals;$/;"	m	struct:bedFilter
thinProtoList	jkOwnLib/fuzzyFind.c	/^void thinProtoList(struct protoGene **pList, int maxToTake)$/;"	f
thisseqend	hg/inc/sargassoSeaXra.h	/^    unsigned thisseqend;	\/* Where alignment in sSea ends *\/$/;"	m	struct:sargassoSeaXra
thisseqstart	hg/inc/sargassoSeaXra.h	/^    unsigned thisseqstart;	\/* Where alignment in sSea begins *\/$/;"	m	struct:sargassoSeaXra
thread	lib/https.c	/^pthread_t thread;$/;"	m	struct:netConnectHttpsParams	file:
thread	lib/net.c	/^pthread_t thread;$/;"	m	struct:netConnectFtpParams	file:
threePrime	hg/inc/atomDb.h	/^    char *threePrime;	\/* atom on the 3' end *\/$/;"	m	struct:atom
ti	hg/inc/traceInfo.h	/^    char *ti;	\/* Trace identifier *\/$/;"	m	struct:traceInfo
tick	inc/apacheLog.h	/^    time_t tick;	\/* Unix tick (seconds since 1970) - derived from timeStamp. *\/$/;"	m	struct:apacheAccessLog
tidyUp	hg/lib/annoGrateWig.c	/^static void tidyUp(const struct annoRow *rowIn, struct annoRow **pOutList,$/;"	f	file:
tigrCmrGene	hg/inc/tigrCmrGene.h	/^struct tigrCmrGene$/;"	s
tigrCmrGeneCommaIn	hg/lib/tigrCmrGene.c	/^struct tigrCmrGene *tigrCmrGeneCommaIn(char **pS, struct tigrCmrGene *ret)$/;"	f
tigrCmrGeneCommaOut	hg/inc/tigrCmrGene.h	104;"	d
tigrCmrGeneFree	hg/lib/tigrCmrGene.c	/^void tigrCmrGeneFree(struct tigrCmrGene **pEl)$/;"	f
tigrCmrGeneFreeList	hg/lib/tigrCmrGene.c	/^void tigrCmrGeneFreeList(struct tigrCmrGene **pList)$/;"	f
tigrCmrGeneLoad	hg/lib/tigrCmrGene.c	/^struct tigrCmrGene *tigrCmrGeneLoad(char **row)$/;"	f
tigrCmrGeneLoadAll	hg/lib/tigrCmrGene.c	/^struct tigrCmrGene *tigrCmrGeneLoadAll(char *fileName) $/;"	f
tigrCmrGeneLoadAllByChar	hg/lib/tigrCmrGene.c	/^struct tigrCmrGene *tigrCmrGeneLoadAllByChar(char *fileName, char chopper) $/;"	f
tigrCmrGeneLoadAllByTab	hg/inc/tigrCmrGene.h	57;"	d
tigrCmrGeneLoadByQuery	hg/lib/tigrCmrGene.c	/^struct tigrCmrGene *tigrCmrGeneLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
tigrCmrGeneOutput	hg/lib/tigrCmrGene.c	/^void tigrCmrGeneOutput(struct tigrCmrGene *el, FILE *f, char sep, char lastSep) $/;"	f
tigrCmrGeneSaveToDb	hg/lib/tigrCmrGene.c	/^void tigrCmrGeneSaveToDb(struct sqlConnection *conn, struct tigrCmrGene *el, char *tableName, int updateSize)$/;"	f
tigrCmrGeneSaveToDbEscaped	hg/lib/tigrCmrGene.c	/^void tigrCmrGeneSaveToDbEscaped(struct sqlConnection *conn, struct tigrCmrGene *el, char *tableName, int updateSize)$/;"	f
tigrCmrGeneStaticLoad	hg/lib/tigrCmrGene.c	/^void tigrCmrGeneStaticLoad(char **row, struct tigrCmrGene *ret)$/;"	f
tigrCmrGeneTabOut	hg/inc/tigrCmrGene.h	101;"	d
tigrCommon	hg/inc/tigrCmrGene.h	/^    char *tigrCommon;	\/* TIGR Common Name *\/$/;"	m	struct:tigrCmrGene
tigrECN	hg/inc/tigrCmrGene.h	/^    char *tigrECN;	\/* TIGR Enzyme Commission Number *\/$/;"	m	struct:tigrCmrGene
tigrGc	hg/inc/tigrCmrGene.h	/^    float tigrGc;	\/* GC content *\/$/;"	m	struct:tigrCmrGene
tigrGene	hg/inc/tigrCmrGene.h	/^    char *tigrGene;	\/* TIGR Gene Symbol *\/$/;"	m	struct:tigrCmrGene
tigrLength	hg/inc/tigrCmrGene.h	/^    unsigned tigrLength;	\/* TIGR sequence length *\/$/;"	m	struct:tigrCmrGene
tigrMainRole	hg/inc/tigrCmrGene.h	/^    char *tigrMainRole;	\/* TIGR Main Role *\/$/;"	m	struct:tigrCmrGene
tigrMw	hg/inc/tigrCmrGene.h	/^    float tigrMw;	\/* Molecular Weight *\/$/;"	m	struct:tigrCmrGene
tigrOperon	hg/inc/tigrOperon.h	/^struct tigrOperon$/;"	s
tigrOperonCommaIn	hg/lib/tigrOperon.c	/^struct tigrOperon *tigrOperonCommaIn(char **pS, struct tigrOperon *ret)$/;"	f
tigrOperonCommaOut	hg/inc/tigrOperon.h	54;"	d
tigrOperonFree	hg/lib/tigrOperon.c	/^void tigrOperonFree(struct tigrOperon **pEl)$/;"	f
tigrOperonFreeList	hg/lib/tigrOperon.c	/^void tigrOperonFreeList(struct tigrOperon **pList)$/;"	f
tigrOperonLoad	hg/lib/tigrOperon.c	/^struct tigrOperon *tigrOperonLoad(char **row)$/;"	f
tigrOperonLoadAll	hg/lib/tigrOperon.c	/^struct tigrOperon *tigrOperonLoadAll(char *fileName) $/;"	f
tigrOperonLoadAllByChar	hg/lib/tigrOperon.c	/^struct tigrOperon *tigrOperonLoadAllByChar(char *fileName, char chopper) $/;"	f
tigrOperonLoadAllByTab	hg/inc/tigrOperon.h	32;"	d
tigrOperonOutput	hg/lib/tigrOperon.c	/^void tigrOperonOutput(struct tigrOperon *el, FILE *f, char sep, char lastSep) $/;"	f
tigrOperonTabOut	hg/inc/tigrOperon.h	51;"	d
tigrPepLength	hg/inc/tigrCmrGene.h	/^    unsigned tigrPepLength;	\/* TIGR Protein length *\/$/;"	m	struct:tigrCmrGene
tigrPi	hg/inc/tigrCmrGene.h	/^    float tigrPi;	\/* Isoelectric point (I think) *\/$/;"	m	struct:tigrCmrGene
tigrSubRole	hg/inc/tigrCmrGene.h	/^    char *tigrSubRole;	\/* TIGR Sub Role *\/$/;"	m	struct:tigrCmrGene
tigrTc	hg/inc/chicken13kInfo.h	/^    char *tigrTc;	\/* TIGR assigned TC *\/$/;"	m	struct:chicken13kInfo
tigrTcAnnot	hg/inc/chicken13kInfo.h	/^    char *tigrTcAnnot;	\/* TIGR TC annotation *\/$/;"	m	struct:chicken13kInfo
tile16	jkOwnLib/crudeali.c	/^    bits32 tile16;$/;"	m	struct:probeTile	file:
tile8	jkOwnLib/crudeali.c	/^    bits16 tile8;$/;"	m	struct:probeTile	file:
tileHashBits	jkOwnLib/crudeali.c	279;"	d	file:
tileHashFunc	jkOwnLib/crudeali.c	282;"	d	file:
tileHashMask	jkOwnLib/crudeali.c	281;"	d	file:
tileHashSize	jkOwnLib/crudeali.c	280;"	d	file:
tileMask	inc/genoFind.h	/^    int tileMask;			 \/* 1-s for each N-mer. *\/$/;"	m	struct:genoFind
tileSize	inc/genoFind.h	/^    int tileSize;			 \/* Size of each N-mer. *\/$/;"	m	struct:genoFind
tileSpaceSize	inc/genoFind.h	/^    int tileSpaceSize;                   \/* Number of N-mer values. *\/$/;"	m	struct:genoFind
tilingPath	hg/inc/tilingPath.h	/^struct tilingPath$/;"	s
tilingPathCommaIn	hg/lib/tilingPath.c	/^struct tilingPath *tilingPathCommaIn(char **pS, struct tilingPath *ret)$/;"	f
tilingPathCommaOut	hg/inc/tilingPath.h	54;"	d
tilingPathFree	hg/lib/tilingPath.c	/^void tilingPathFree(struct tilingPath **pEl)$/;"	f
tilingPathFreeList	hg/lib/tilingPath.c	/^void tilingPathFreeList(struct tilingPath **pList)$/;"	f
tilingPathLoad	hg/lib/tilingPath.c	/^struct tilingPath *tilingPathLoad(char **row)$/;"	f
tilingPathLoadAll	hg/lib/tilingPath.c	/^struct tilingPath *tilingPathLoadAll(char *fileName) $/;"	f
tilingPathLoadWhere	hg/lib/tilingPath.c	/^struct tilingPath *tilingPathLoadWhere(struct sqlConnection *conn, char *table, char *where)$/;"	f
tilingPathOutput	hg/lib/tilingPath.c	/^void tilingPathOutput(struct tilingPath *el, FILE *f, char sep, char lastSep) $/;"	f
tilingPathStaticLoad	hg/lib/tilingPath.c	/^void tilingPathStaticLoad(char **row, struct tilingPath *ret)$/;"	f
tilingPathTabOut	hg/inc/tilingPath.h	51;"	d
time	hg/inc/targetDb.h	/^    char *time;	\/* Time at which this record was updated -- should be newer than db tables (so should blat server) *\/$/;"	m	struct:targetDb
timeDiff	lib/rudp.c	/^static int timeDiff(struct timeval *t1, struct timeval *t2)$/;"	f	file:
timeIt	hg/lib/fileUi.c	/^static boolean timeIt = FALSE; \/\/ Can remove when satisfied with timing.$/;"	v	file:
timeMoreRecentThanFile	hg/lib/targetDb.c	/^static boolean timeMoreRecentThanFile(int time, char *fileName)$/;"	f	file:
timeMoreRecentThanTable	hg/lib/targetDb.c	/^static boolean timeMoreRecentThanTable(int time, struct sqlConnection *conn,$/;"	f	file:
timeOut	inc/rudp.h	/^    int timeOut;	\/* Ideal timeout for next receive. *\/$/;"	m	struct:rudp
timePoint	hg/inc/ispyTables.h	/^    char *timePoint;	\/* Time Point *\/$/;"	m	struct:labTrack
timeStamp	inc/apacheLog.h	/^    char *timeStamp;	\/* Time stamp like 23\/Nov\/2003:04:21:08 *\/$/;"	m	struct:apacheAccessLog
timeZone	inc/apacheLog.h	/^    char *timeZone;	\/* Extra number after timeStamp, usually -0800 *\/$/;"	m	struct:apacheAccessLog
tissue	hg/inc/affyAtlas.h	/^    char *tissue;	\/* tissue sample comes from *\/$/;"	m	struct:affyAtlas
tissue	hg/inc/cgh.h	/^    char *tissue;	\/* Type of tissue cell line derived from (type 2 and type 3) *\/$/;"	m	struct:cgh
tissueDesc	hg/inc/sageExp.h	/^    char *tissueDesc;	\/* Brief Description of tissues. *\/$/;"	m	struct:sageExp
tissueSupplier	hg/inc/sageExp.h	/^    char *tissueSupplier;	\/* Who supplied the tissue. *\/$/;"	m	struct:sageExp
tissueType	hg/inc/sageExp.h	/^    char *tissueType;	\/* Brief Description of cells used. *\/$/;"	m	struct:sageExp
title	hg/inc/gwasCatalog.h	/^    char *title;	\/* Title of publication *\/$/;"	m	struct:gwasCatalog
title	hg/inc/hui.h	/^    char**title;         \/\/ Always order in trackDb.ra (eg: Factor,Cell Line,View)$/;"	m	struct:_sortOrder
title	hg/inc/hui.h	/^    char*title;               \/\/ Title that User sees$/;"	m	struct:_filterBy
title	hg/inc/omimTitle.h	/^    char *title;	\/* title *\/$/;"	m	struct:omimTitle
titles	hg/lib/hui.c	/^    char **titles;       \/\/ Ary of Titles of subGroups a child belongs to (ie Peak)$/;"	m	struct:_membership	file:
titles	hg/lib/hui.c	/^    char **titles;$/;"	m	struct:_members	file:
tm	hg/inc/dbRIP.h	/^    float tm;	\/* temperature *\/$/;"	m	struct:dbRIP
tm	hg/inc/dnaProbe.h	/^    float tm;	\/* extimated binding tm *\/$/;"	m	struct:dnaProbe
tmpNodeToString	lib/genomeRangeTree.c	/^void tmpNodeToString(void *item)$/;"	f
tmpTreeToString	lib/genomeRangeTree.c	/^struct dyString *tmpTreeToString = NULL;$/;"	v	typeref:struct:dyString
tmpTreeToStringCurChrom	lib/genomeRangeTree.c	/^char *tmpTreeToStringCurChrom = NULL;$/;"	v
tngChr	hg/inc/stsInfo.h	/^    char *tngChr;	\/* Chromosome in Stanford TNG map *\/$/;"	m	struct:stsInfo
tngChr	hg/inc/stsInfo2.h	/^    char *tngChr;	\/* Chromosome in Stanford TNG map *\/$/;"	m	struct:stsInfo2
tngLOD	hg/inc/stsInfo.h	/^    float tngLOD;	\/* LOD score in Stanford TNG map *\/$/;"	m	struct:stsInfo
tngLOD	hg/inc/stsInfo2.h	/^    float tngLOD;	\/* LOD score in Stanford TNG map *\/$/;"	m	struct:stsInfo2
tngName	hg/inc/stsInfo.h	/^    char *tngName;	\/* Name in Stanford TNG map *\/$/;"	m	struct:stsInfo
tngName	hg/inc/stsInfo2.h	/^    char *tngName;	\/* Name in Stanford TNG map *\/$/;"	m	struct:stsInfo2
tngPos	hg/inc/stsInfo.h	/^    float tngPos;	\/* Position in Stanford TNG map *\/$/;"	m	struct:stsInfo
tngPos	hg/inc/stsInfo2.h	/^    float tngPos;	\/* Position in Stanford TNG map *\/$/;"	m	struct:stsInfo2
to	hg/inc/coordConv.h	/^    struct coordConv *to; \/** placement of old coordConv on new draft genome *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::coordConv
toDb	hg/inc/liftOverChain.h	/^    char *toDb;	\/* Short name of 'to' database.  'hg16' or the like *\/$/;"	m	struct:liftOverChain
toGenus	hg/inc/taxonXref.h	/^    char *toGenus;	\/* NCBI tree down to Genus *\/$/;"	m	struct:taxonXref
toLowerN	lib/common.c	/^void toLowerN(char *s, int n)$/;"	f
toRna	lib/dnautil.c	/^void toRna(DNA *dna)$/;"	f
toUpperN	lib/common.c	/^void toUpperN(char *s, int n)$/;"	f
toggleCase	lib/common.c	/^void toggleCase(char *s, int size)$/;"	f
tok	lib/intExp.c	/^static struct kxTok *tok;$/;"	v	typeref:struct:kxTok	file:
token	lib/keys.c	/^static struct kxTok *token;      \/* Next token for parser. *\/$/;"	v	typeref:struct:kxTok	file:
tokenList	inc/keys.h	/^    void *tokenList;     \/* Internally struct tok. *\/$/;"	m	struct:keyExp
tokenizer	inc/tokenizer.h	/^struct tokenizer$/;"	s
tokenizerErrAbort	lib/tokenizer.c	/^void tokenizerErrAbort(struct tokenizer *tkz, char *format, ...)$/;"	f
tokenizerFileName	lib/tokenizer.c	/^char *tokenizerFileName(struct tokenizer *tkz)$/;"	f
tokenizerFree	lib/tokenizer.c	/^void tokenizerFree(struct tokenizer **pTkz)$/;"	f
tokenizerLineCount	lib/tokenizer.c	/^int tokenizerLineCount(struct tokenizer *tkz)$/;"	f
tokenizerMustHaveNext	lib/tokenizer.c	/^char *tokenizerMustHaveNext(struct tokenizer *tkz)$/;"	f
tokenizerMustMatch	lib/tokenizer.c	/^void tokenizerMustMatch(struct tokenizer *tkz, char *string)$/;"	f
tokenizerNew	lib/tokenizer.c	/^struct tokenizer *tokenizerNew(char *fileName)$/;"	f
tokenizerNext	lib/tokenizer.c	/^char *tokenizerNext(struct tokenizer *tkz)$/;"	f
tokenizerNotEnd	lib/tokenizer.c	/^void tokenizerNotEnd(struct tokenizer *tkz)$/;"	f
tokenizerOnLineFile	lib/tokenizer.c	/^struct tokenizer *tokenizerOnLineFile(struct lineFile *lf)$/;"	f
tokenizerReuse	lib/tokenizer.c	/^void tokenizerReuse(struct tokenizer *tkz)$/;"	f
tolowers	inc/common.h	828;"	d
tooManyBlocks	jkOwnLib/patSpace.c	/^void tooManyBlocks()$/;"	f
top	hg/inc/stanMad.h	/^    int top;	\/* The top coordinate of the spot. *\/$/;"	m	struct:stanMad
topFileName	lib/dnaLoad.c	/^    char *topFileName;		\/* Highest level file name. *\/$/;"	m	struct:dnaLoad	file:
topObject	inc/xap.h	/^   void *topObject;				\/* Top level object - valid after xapParse. *\/$/;"	m	struct:xap
topType	inc/xap.h	/^   char *topType;				\/* Top level type name - valid after xapParse. *\/$/;"	m	struct:xap
top_dist	lib/gemfont.h	/^WORD	top_dist;$/;"	m	struct:font_hdr
top_slot	lib/gifdecomp.c	/^static WORD top_slot;                      \/* Highest code for current size *\/$/;"	v	file:
topoIx	lib/diGraph.c	/^static int topoIx;$/;"	v	file:
topoOrder	inc/diGraph.h	/^    int topoOrder;      \/* Topographical order after call to dgTopoSort. *\/$/;"	m	struct:dgNode
totCount	hg/inc/genotypeFreqs.h	/^    int totCount;	\/* totalcount	60 *\/$/;"	m	struct:genotypeFreqs
total	hg/inc/alleleFreqs.h	/^    int total;	\/*  total			120 *\/$/;"	m	struct:alleleFreqs
total	hg/inc/cnpIafrate2.h	/^    unsigned total;	\/* Total gain and loss *\/$/;"	m	struct:cnpIafrate2
total	inc/md5.h	/^    uint64 total;$/;"	m	struct:md5_context
totalAlleleCountCEU	hg/inc/hapmapAllelesSummary.h	/^    unsigned totalAlleleCountCEU;	\/* total allele count for the CEU population *\/$/;"	m	struct:hapmapAllelesSummary
totalAlleleCountCHB	hg/inc/hapmapAllelesSummary.h	/^    unsigned totalAlleleCountCHB;	\/* total allele count for the CHB population *\/$/;"	m	struct:hapmapAllelesSummary
totalAlleleCountJPT	hg/inc/hapmapAllelesSummary.h	/^    unsigned totalAlleleCountJPT;	\/* total allele count for the JPT population *\/$/;"	m	struct:hapmapAllelesSummary
totalAlleleCountYRI	hg/inc/hapmapAllelesSummary.h	/^    unsigned totalAlleleCountYRI;	\/* total allele count for the YRI population *\/$/;"	m	struct:hapmapAllelesSummary
totalBedElements	hg/inc/wiggle.h	/^    unsigned long long totalBedElements;  \/* on all bed lists *\/$/;"	m	struct:wiggleDataStream
totalCount	hg/inc/hapmapAlleleFreq.h	/^    unsigned totalCount;	\/* Count of individuals *\/$/;"	m	struct:hapmapAlleleFreq
totalCount	hg/inc/sageExp.h	/^    int totalCount;	\/* Sum of all the tag counts for this experiment. *\/$/;"	m	struct:sageExp
totalCount	inc/blastParse.h	/^    int totalCount;                     \/* Total number of nucleotides. *\/$/;"	m	struct:blastBlock
totalDegenerateN	jkOwnLib/ffSeedExtend.c	/^static boolean totalDegenerateN(char *s, int seedSize)$/;"	f	file:
totalHeight	hg/inc/genoLay.h	/^    int totalHeight;			\/* Total width\/height in pixels *\/$/;"	m	struct:genoLay
totalNumConnects	hg/lib/jksql.c	/^static unsigned totalNumConnects = 0;$/;"	v	file:
totalOverlap	lib/rangeTree.c	/^static int totalOverlap;$/;"	v	file:
totalScore	lib/chainBlock.c	/^    double totalScore;		\/* Total score of chain up to here. *\/$/;"	m	struct:kdLeaf	file:
totalSeqSize	inc/genoFind.h	/^    bits32 totalSeqSize;		 \/* Total size of all sequences. *\/$/;"	m	struct:genoFind
totalSummaryOffset	inc/bbiFile.h	/^    bits64 totalSummaryOffset;	\/* Offset to total summary information if any.  (On older files have to calculate) *\/$/;"	m	struct:bbiFile
touchUdcSettings	hg/lib/customFactory.c	/^static void touchUdcSettings(struct trackDb *tdb)$/;"	f	file:
touppers	inc/common.h	824;"	d
tpDist	hg/inc/dnaProbe.h	/^    int tpDist;	\/* distance of from three prime end *\/$/;"	m	struct:dnaProbe
trId	hg/inc/mcnBreakpoints.h	/^    char *trId;	\/* MCN Trait ID *\/$/;"	m	struct:mcnBreakpoints
trTxt	hg/inc/mcnBreakpoints.h	/^    char *trTxt;	\/* MCN Trait name *\/$/;"	m	struct:mcnBreakpoints
traceIndent	hg/lib/jksql.c	/^static unsigned traceIndent = 0;            \/* how much to indent *\/$/;"	v	file:
traceInfo	hg/inc/traceInfo.h	/^struct traceInfo$/;"	s
traceInfoCommaIn	hg/lib/traceInfo.c	/^struct traceInfo *traceInfoCommaIn(char **pS, struct traceInfo *ret)$/;"	f
traceInfoCommaOut	hg/inc/traceInfo.h	47;"	d
traceInfoFree	hg/lib/traceInfo.c	/^void traceInfoFree(struct traceInfo **pEl)$/;"	f
traceInfoFreeList	hg/lib/traceInfo.c	/^void traceInfoFreeList(struct traceInfo **pList)$/;"	f
traceInfoLoad	hg/lib/traceInfo.c	/^struct traceInfo *traceInfoLoad(char **row)$/;"	f
traceInfoLoadAll	hg/lib/traceInfo.c	/^struct traceInfo *traceInfoLoadAll(char *fileName) $/;"	f
traceInfoOutput	hg/lib/traceInfo.c	/^void traceInfoOutput(struct traceInfo *el, FILE *f, char sep, char lastSep) $/;"	f
traceInfoStaticLoad	hg/lib/traceInfo.c	/^void traceInfoStaticLoad(char **row, struct traceInfo *ret)$/;"	f
traceInfoTabOut	hg/inc/traceInfo.h	44;"	d
track	hg/inc/trackDb.h	/^    char *track; \/* Symbolic ID of Track - used in cart. Is tableName in database historically. *\/$/;"	m	struct:trackDb
trackDataAccessible	hg/lib/hdb.c	/^static boolean trackDataAccessible(char *database, struct trackDb *tdb)$/;"	f	file:
trackDb	hg/inc/trackDb.h	/^struct trackDb$/;"	s
trackDbAddInfo	hg/lib/trackDbCustom.c	/^static void trackDbAddInfo(struct trackDb *bt,$/;"	f	file:
trackDbAddRelease	hg/lib/trackDbCustom.c	/^static void trackDbAddRelease(struct trackDb *bt, char *releaseTag)$/;"	f	file:
trackDbAddSetting	hg/lib/trackDbCustom.c	/^void trackDbAddSetting(struct trackDb *bt, char *name, char *val)$/;"	f
trackDbAddTableField	hg/lib/trackDbCustom.c	/^void trackDbAddTableField(struct trackDb *tdbList)$/;"	f
trackDbCheckValidRelease	hg/lib/trackDbCustom.c	/^boolean trackDbCheckValidRelease(char *tag)$/;"	f
trackDbCmp	hg/lib/trackDbCustom.c	/^int trackDbCmp(const void *va, const void *vb)$/;"	f
trackDbCommaIn	hg/lib/trackDb.c	/^struct trackDb *trackDbCommaIn(char **pS, struct trackDb *ret)$/;"	f
trackDbCommaOut	hg/inc/trackDb.h	317;"	d
trackDbContainerMarkup	hg/lib/hdb.c	/^static void trackDbContainerMarkup(struct trackDb *parent, struct trackDb *tdbList)$/;"	f	file:
trackDbCountDescendantLeaves	hg/lib/trackDbCustom.c	/^int trackDbCountDescendantLeaves(struct trackDb *tdb)$/;"	f
trackDbCountDescendants	hg/lib/trackDbCustom.c	/^int trackDbCountDescendants(struct trackDb *tdb)$/;"	f
trackDbFieldsFromSettings	hg/lib/trackDbCustom.c	/^void trackDbFieldsFromSettings(struct trackDb *bt)$/;"	f
trackDbFile	hg/inc/trackHub.h	/^    char *trackDbFile;	\/* The base trackDb.ra file. *\/$/;"	m	struct:trackHubGenome
trackDbFloatSettingOrDefault	hg/lib/trackDbCustom.c	/^float trackDbFloatSettingOrDefault(struct trackDb *tdb, char *name, float defaultVal)$/;"	f
trackDbFree	hg/lib/trackDb.c	/^void trackDbFree(struct trackDb **pEl)$/;"	f
trackDbFreeList	hg/lib/trackDb.c	/^void trackDbFreeList(struct trackDb **pList)$/;"	f
trackDbFromOpenRa	hg/lib/trackDbCustom.c	/^struct trackDb *trackDbFromOpenRa(struct lineFile *lf, char *releaseTag)$/;"	f
trackDbFromRa	hg/lib/trackDbCustom.c	/^struct trackDb *trackDbFromRa(char *raFile, char *releaseTag)$/;"	f
trackDbGetSupertrackName	hg/lib/trackDbCustom.c	/^char *trackDbGetSupertrackName(struct trackDb *tdb)$/;"	f
trackDbHashSettings	hg/lib/trackDbCustom.c	/^struct hash *trackDbHashSettings(struct trackDb *tdb)$/;"	f
trackDbInclude	hg/lib/trackDbCustom.c	/^char *trackDbInclude(char *raFile, char *line, char **releaseTag)$/;"	f
trackDbLinkUpGenerations	hg/lib/trackDbCustom.c	/^struct trackDb *trackDbLinkUpGenerations(struct trackDb *tdbList)$/;"	f
trackDbListAddNamePrefix	hg/lib/trackHub.c	/^static void trackDbListAddNamePrefix(struct trackDb *tdbList, char *prefix)$/;"	f	file:
trackDbListGetRefsToDescendantLeaves	hg/lib/trackDbCustom.c	/^struct slRef *trackDbListGetRefsToDescendantLeaves(struct trackDb *tdbList)$/;"	f
trackDbListGetRefsToDescendants	hg/lib/trackDbCustom.c	/^struct slRef *trackDbListGetRefsToDescendants(struct trackDb *tdbList)$/;"	f
trackDbLoad	hg/lib/trackDb.c	/^struct trackDb *trackDbLoad(char **row)$/;"	f
trackDbLoadAll	hg/lib/trackDb.c	/^struct trackDb *trackDbLoadAll(char *fileName)$/;"	f
trackDbLoadAllByChar	hg/lib/trackDb.c	/^struct trackDb *trackDbLoadAllByChar(char *fileName, char chopper)$/;"	f
trackDbLoadAllByTab	hg/inc/trackDb.h	295;"	d
trackDbLoadWhere	hg/lib/trackDb.c	/^struct trackDb *trackDbLoadWhere(struct sqlConnection *conn, char *table,$/;"	f
trackDbLocalSetting	hg/lib/trackDbCustom.c	/^char *trackDbLocalSetting(struct trackDb *tdb, char *name)$/;"	f
trackDbLocalSettingsWildMatch	hg/lib/trackDbCustom.c	/^struct slName *trackDbLocalSettingsWildMatch(struct trackDb *tdb, char *expression)$/;"	f
trackDbNew	hg/lib/trackDbCustom.c	/^struct trackDb *trackDbNew()$/;"	f
trackDbOrigAssembly	hg/lib/trackDbCustom.c	/^char *trackDbOrigAssembly(struct trackDb *tdb)$/;"	f
trackDbOutput	hg/lib/trackDb.c	/^void trackDbOutput(struct trackDb *el, FILE *f, char sep, char lastSep)$/;"	f
trackDbOverride	hg/lib/trackDbCustom.c	/^void trackDbOverride(struct trackDb *td, struct trackDb *overTd)$/;"	f
trackDbPolish	hg/lib/trackDbCustom.c	/^void trackDbPolish(struct trackDb *bt)$/;"	f
trackDbPolishAfterLinkup	hg/lib/hdb.c	/^struct trackDb *trackDbPolishAfterLinkup(struct trackDb *tdbList, char *db)$/;"	f
trackDbPrintOrigAssembly	hg/lib/trackDbCustom.c	/^void trackDbPrintOrigAssembly(struct trackDb *tdb, char *database)$/;"	f
trackDbPrioritizeContainerItems	hg/lib/trackDbCustom.c	/^void trackDbPrioritizeContainerItems(struct trackDb *tdbList)$/;"	f
trackDbRefCmp	hg/lib/trackDbCustom.c	/^int trackDbRefCmp(const void *va, const void *vb)$/;"	f
trackDbRequiredSetting	hg/lib/trackDbCustom.c	/^char *trackDbRequiredSetting(struct trackDb *tdb, char *name)$/;"	f
trackDbSetting	hg/lib/trackDbCustom.c	/^char *trackDbSetting(struct trackDb *tdb, char *name)$/;"	f
trackDbSettingBlocksConfiguration	hg/lib/trackDbCustom.c	/^boolean trackDbSettingBlocksConfiguration(struct trackDb *tdb, boolean onlyAjax)$/;"	f
trackDbSettingByView	hg/lib/trackDbCustom.c	/^char *trackDbSettingByView(struct trackDb *tdb, char *name)$/;"	f
trackDbSettingClosestToHome	hg/inc/trackDb.h	441;"	d
trackDbSettingClosestToHomeOn	hg/lib/trackDbCustom.c	/^boolean trackDbSettingClosestToHomeOn(struct trackDb *tdb, char *name)$/;"	f
trackDbSettingClosestToHomeOrDefault	hg/lib/trackDbCustom.c	/^char *trackDbSettingClosestToHomeOrDefault(struct trackDb *tdb, char *name, char *defaultVal)$/;"	f
trackDbSettingOn	hg/lib/trackDbCustom.c	/^boolean trackDbSettingOn(struct trackDb *tdb, char *name)$/;"	f
trackDbSettingOrDefault	hg/lib/trackDbCustom.c	/^char *trackDbSettingOrDefault(struct trackDb *tdb, char *name, char *defaultVal)$/;"	f
trackDbSettingsFromString	hg/lib/trackDbCustom.c	/^struct hash *trackDbSettingsFromString(char *string)$/;"	f
trackDbSettingsLike	hg/lib/trackDbCustom.c	/^struct hashEl *trackDbSettingsLike(struct trackDb *tdb, char *wildStr)$/;"	f
trackDbSettingsWildMatch	hg/lib/trackDbCustom.c	/^struct slName *trackDbSettingsWildMatch(struct trackDb *tdb, char *expression)$/;"	f
trackDbSuperMarkup	hg/lib/trackDbCustom.c	/^void trackDbSuperMarkup(struct trackDb *tdbList)$/;"	f
trackDbSuperMemberSettings	hg/lib/trackDbCustom.c	/^void trackDbSuperMemberSettings(struct trackDb *tdb)$/;"	f
trackDbTabOut	hg/inc/trackDb.h	314;"	d
trackDbTopLevelSelfOrParent	hg/lib/trackDbCustom.c	/^struct trackDb *trackDbTopLevelSelfOrParent(struct trackDb *tdb)$/;"	f
trackDbUpdateOldTag	hg/lib/trackDbCustom.c	/^boolean trackDbUpdateOldTag(char **pTag, char **pVal)$/;"	f
trackFindLabel	hg/lib/hui.c	/^char *trackFindLabel(struct trackNameAndLabel *list, char *label)$/;"	f
trackHashMakeWithComposites	hg/lib/hui.c	/^struct hash *trackHashMakeWithComposites(char *db,char *chrom,struct trackDb **tdbList,bool withComposites)$/;"	f
trackHub	hg/inc/hubConnect.h	/^    struct trackHub *trackHub; \/* pointer to structure that describes hub *\/$/;"	m	struct:hubConnectStatus	typeref:struct:hubConnectStatus::trackHub
trackHub	hg/inc/trackHub.h	/^struct trackHub $/;"	s
trackHubAddGroupName	hg/lib/trackHub.c	/^void trackHubAddGroupName(char *hubName, struct trackDb *tdbList)$/;"	f
trackHubAddNamePrefix	hg/lib/trackHub.c	/^void trackHubAddNamePrefix(char *hubName, struct trackDb *tdbList)$/;"	f
trackHubCheck	hg/lib/trackHub.c	/^int trackHubCheck(char *hubUrl, struct dyString *errors, boolean checkTracks)$/;"	f
trackHubClose	hg/lib/trackHub.c	/^void trackHubClose(struct trackHub **pHub)$/;"	f
trackHubFindGenome	hg/lib/trackHub.c	/^struct trackHubGenome *trackHubFindGenome(struct trackHub *hub, char *genomeName)$/;"	f
trackHubFromId	hg/lib/hubConnect.c	/^struct trackHub *trackHubFromId(unsigned hubId)$/;"	f
trackHubGenome	hg/inc/trackHub.h	/^struct trackHubGenome$/;"	s
trackHubGenomeFree	hg/lib/trackHub.c	/^void trackHubGenomeFree(struct trackHubGenome **pGenome)$/;"	f
trackHubGenomeFreeList	hg/lib/trackHub.c	/^void trackHubGenomeFreeList(struct trackHubGenome **pList)$/;"	f
trackHubGenomeReadRa	hg/lib/trackHub.c	/^static struct trackHubGenome *trackHubGenomeReadRa(char *url, struct hash *hash)$/;"	f	file:
trackHubHasDatabase	hg/lib/hubConnect.c	/^boolean trackHubHasDatabase(struct trackHub *hub, char *database) $/;"	f
trackHubOpen	hg/lib/trackHub.c	/^struct trackHub *trackHubOpen(char *url, char *hubName)$/;"	f
trackHubRelativeUrl	hg/lib/trackHub.c	/^char *trackHubRelativeUrl(char *hubUrl, char *path)$/;"	f
trackHubRequiredSetting	hg/lib/trackHub.c	/^char *trackHubRequiredSetting(struct trackHub *hub, char *name)$/;"	f
trackHubSetting	hg/lib/trackHub.c	/^char *trackHubSetting(struct trackHub *hub, char *name)$/;"	f
trackHubTracksForGenome	hg/lib/trackHub.c	/^struct trackDb *trackHubTracksForGenome(struct trackHub *hub, struct trackHubGenome *genome)$/;"	f
trackId	hg/inc/ispyTables.h	/^    char *trackId;	\/* Lab Track ID *\/$/;"	m	struct:labTrack
trackIsType	hg/lib/hdb.c	/^boolean trackIsType(char *database, char *table, struct trackDb *parent, char *type, struct customTrack *(*ctLookupName)(char *table))$/;"	f
trackLayout	hg/inc/trackLayout.h	/^struct trackLayout$/;"	s
trackLayoutInclFontExtras	hg/lib/trackLayout.c	/^boolean trackLayoutInclFontExtras()$/;"	f
trackLayoutInit	hg/lib/trackLayout.c	/^void trackLayoutInit(struct trackLayout *tl, struct cart *cart)$/;"	f
trackLayoutSetPicWidth	hg/lib/trackLayout.c	/^void trackLayoutSetPicWidth(struct trackLayout *tl, char *s)$/;"	f
trackLineToTrack	hg/lib/customFactory.c	/^static struct customTrack *trackLineToTrack(char *genomeDb, char *line, int lineIx)$/;"	f	file:
trackNameAndLabel	hg/inc/hui.h	/^struct trackNameAndLabel$/;"	s
trackNameAndLabelCmp	hg/lib/hui.c	/^int trackNameAndLabelCmp(const void *va, const void *vb)$/;"	f
trackTable	hg/inc/trackTable.h	/^struct trackTable$/;"	s
trackTableCommaIn	hg/lib/trackTable.c	/^struct trackTable *trackTableCommaIn(char **pS, struct trackTable *ret)$/;"	f
trackTableCommaOut	hg/inc/trackTable.h	62;"	d
trackTableFree	hg/lib/trackTable.c	/^void trackTableFree(struct trackTable **pEl)$/;"	f
trackTableFreeList	hg/lib/trackTable.c	/^void trackTableFreeList(struct trackTable **pList)$/;"	f
trackTableLoad	hg/lib/trackTable.c	/^struct trackTable *trackTableLoad(char **row)$/;"	f
trackTableLoadAll	hg/lib/trackTable.c	/^struct trackTable *trackTableLoadAll(char *fileName) $/;"	f
trackTableOutput	hg/lib/trackTable.c	/^void trackTableOutput(struct trackTable *el, FILE *f, char sep, char lastSep) $/;"	f
trackTableStaticLoad	hg/lib/trackTable.c	/^void trackTableStaticLoad(char **row, struct trackTable *ret)$/;"	f
trackTableTabOut	hg/inc/trackTable.h	59;"	d
trackToBaseMask	hg/lib/baseMaskCommon.c	/^void trackToBaseMask(char *db, char *track, char *chromDb, char *oBama, boolean quiet)$/;"	f
trackVersion	hg/inc/trackVersion.h	/^struct trackVersion$/;"	s
trackVersionCommaIn	hg/lib/trackVersion.c	/^struct trackVersion *trackVersionCommaIn(char **pS, struct trackVersion *ret)$/;"	f
trackVersionCommaOut	hg/inc/trackVersion.h	92;"	d
trackVersionFree	hg/lib/trackVersion.c	/^void trackVersionFree(struct trackVersion **pEl)$/;"	f
trackVersionFreeList	hg/lib/trackVersion.c	/^void trackVersionFreeList(struct trackVersion **pList)$/;"	f
trackVersionLoad	hg/lib/trackVersion.c	/^struct trackVersion *trackVersionLoad(char **row)$/;"	f
trackVersionLoadAll	hg/lib/trackVersion.c	/^struct trackVersion *trackVersionLoadAll(char *fileName) $/;"	f
trackVersionLoadAllByChar	hg/lib/trackVersion.c	/^struct trackVersion *trackVersionLoadAllByChar(char *fileName, char chopper) $/;"	f
trackVersionLoadAllByTab	hg/inc/trackVersion.h	45;"	d
trackVersionLoadByQuery	hg/lib/trackVersion.c	/^struct trackVersion *trackVersionLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
trackVersionOutput	hg/lib/trackVersion.c	/^void trackVersionOutput(struct trackVersion *el, FILE *f, char sep, char lastSep) $/;"	f
trackVersionSaveToDb	hg/lib/trackVersion.c	/^void trackVersionSaveToDb(struct sqlConnection *conn, struct trackVersion *el, char *tableName, int updateSize)$/;"	f
trackVersionSaveToDbEscaped	hg/lib/trackVersion.c	/^void trackVersionSaveToDbEscaped(struct sqlConnection *conn, struct trackVersion *el, char *tableName, int updateSize)$/;"	f
trackVersionStaticLoad	hg/lib/trackVersion.c	/^void trackVersionStaticLoad(char **row, struct trackVersion *ret)$/;"	f
trackVersionTabOut	hg/inc/trackVersion.h	89;"	d
trackVisibility	hg/inc/hui.h	/^enum trackVisibility$/;"	g
trackWidth	hg/inc/trackLayout.h	/^    int trackWidth;		\/* Width of tracks. *\/$/;"	m	struct:trackLayout
tradeMismatchToCloseSpliceGap	jkOwnLib/ffSeedExtend.c	/^static boolean tradeMismatchToCloseSpliceGap( struct ffAli *left, $/;"	f	file:
trait	hg/inc/gwasCatalog.h	/^    char *trait;	\/* Disease or trait assessed in study *\/$/;"	m	struct:gwasCatalog
tranlsation	hg/inc/taxonGeneticCode.h	/^    char *tranlsation;	\/* translation table for this genetic code (one AA per codon 1-64) *\/$/;"	m	struct:taxonGeneticCode
trans	inc/trans3.h	/^     aaSeq *trans[3];			\/* Translated sequences.  Allocated here*\/$/;"	m	struct:trans3
trans3	inc/trans3.h	/^struct trans3$/;"	s
trans3Find	jkOwnLib/trans3.c	/^struct trans3 *trans3Find(struct hash *t3Hash, char *name, int start, int end)$/;"	f
trans3Frame	jkOwnLib/trans3.c	/^int trans3Frame(char *pt, struct trans3 *t3List)$/;"	f
trans3Free	jkOwnLib/trans3.c	/^void trans3Free(struct trans3 **pT3)$/;"	f
trans3FreeList	jkOwnLib/trans3.c	/^void trans3FreeList(struct trans3 **pList)$/;"	f
trans3GenoPos	jkOwnLib/trans3.c	/^int trans3GenoPos(char *pt, bioSeq *seq, struct trans3 *t3List, boolean isEnd)$/;"	f
trans3New	jkOwnLib/trans3.c	/^struct trans3 *trans3New(struct dnaSeq *seq)$/;"	f
trans3Offset	jkOwnLib/trans3.c	/^void trans3Offset(struct trans3 *t3List, AA *aa, int *retOffset, int *retFrame)$/;"	f
trans3Offsets	jkOwnLib/supStitch.c	/^static void trans3Offsets(struct trans3 *t3List, AA *startP, AA *endP,$/;"	f	file:
transCountBothStrands	jkOwnLib/genoFind.c	/^static void transCountBothStrands(struct dnaSeq *seq, $/;"	f	file:
transId	hg/inc/knownInfo.h	/^    char *transId;	\/* Transcript id. Genie generated ID. *\/$/;"	m	struct:knownInfo
transId	hg/inc/knownMore.h	/^    char *transId;	\/* Transcript id. Genie generated ID. *\/$/;"	m	struct:knownMore
transIndexBothStrands	jkOwnLib/genoFind.c	/^static void transIndexBothStrands(struct dnaSeq *seq, $/;"	f	file:
transMapGene	hg/inc/transMapGene.h	/^struct transMapGene$/;"	s
transMapGeneCommaIn	hg/lib/transMapGene.c	/^struct transMapGene *transMapGeneCommaIn(char **pS, struct transMapGene *ret)$/;"	f
transMapGeneCommaOut	hg/inc/transMapGene.h	58;"	d
transMapGeneFree	hg/lib/transMapGene.c	/^void transMapGeneFree(struct transMapGene **pEl)$/;"	f
transMapGeneFreeList	hg/lib/transMapGene.c	/^void transMapGeneFreeList(struct transMapGene **pList)$/;"	f
transMapGeneLoad	hg/lib/transMapGene.c	/^struct transMapGene *transMapGeneLoad(char **row)$/;"	f
transMapGeneLoadAll	hg/lib/transMapGene.c	/^struct transMapGene *transMapGeneLoadAll(char *fileName) $/;"	f
transMapGeneLoadAllByChar	hg/lib/transMapGene.c	/^struct transMapGene *transMapGeneLoadAllByChar(char *fileName, char chopper) $/;"	f
transMapGeneLoadAllByTab	hg/inc/transMapGene.h	36;"	d
transMapGeneOutput	hg/lib/transMapGene.c	/^void transMapGeneOutput(struct transMapGene *el, FILE *f, char sep, char lastSep) $/;"	f
transMapGeneQuery	hg/lib/transMapGene.c	/^struct transMapGene *transMapGeneQuery(struct sqlConnection *geneConn,$/;"	f
transMapGeneStaticLoad	hg/lib/transMapGene.c	/^void transMapGeneStaticLoad(char **row, struct transMapGene *ret)$/;"	f
transMapGeneTabOut	hg/inc/transMapGene.h	55;"	d
transMapGeneTblSetting	hg/inc/transMapStuff.h	13;"	d
transMapIdToAcc	hg/lib/transMapStuff.c	/^char *transMapIdToAcc(char *id)$/;"	f
transMapInfo	hg/inc/transMapInfo.h	/^struct transMapInfo$/;"	s
transMapInfoAll	hg/inc/transMapInfo.h	/^    transMapInfoAll = 1,$/;"	e	enum:transMapInfoChainSubset
transMapInfoChainSubset	hg/inc/transMapInfo.h	/^enum transMapInfoChainSubset$/;"	g
transMapInfoCommaIn	hg/lib/transMapInfo.c	/^struct transMapInfo *transMapInfoCommaIn(char **pS, struct transMapInfo *ret)$/;"	f
transMapInfoCommaOut	hg/inc/transMapInfo.h	66;"	d
transMapInfoFree	hg/lib/transMapInfo.c	/^void transMapInfoFree(struct transMapInfo **pEl)$/;"	f
transMapInfoFreeList	hg/lib/transMapInfo.c	/^void transMapInfoFreeList(struct transMapInfo **pList)$/;"	f
transMapInfoLoad	hg/lib/transMapInfo.c	/^struct transMapInfo *transMapInfoLoad(char **row)$/;"	f
transMapInfoLoadAll	hg/lib/transMapInfo.c	/^struct transMapInfo *transMapInfoLoadAll(char *fileName) $/;"	f
transMapInfoLoadAllByChar	hg/lib/transMapInfo.c	/^struct transMapInfo *transMapInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
transMapInfoLoadAllByTab	hg/inc/transMapInfo.h	44;"	d
transMapInfoOutput	hg/lib/transMapInfo.c	/^void transMapInfoOutput(struct transMapInfo *el, FILE *f, char sep, char lastSep) $/;"	f
transMapInfoQuery	hg/lib/transMapInfo.c	/^struct transMapInfo *transMapInfoQuery(struct sqlConnection *conn,$/;"	f
transMapInfoRbest	hg/inc/transMapInfo.h	/^    transMapInfoRbest = 3,$/;"	e	enum:transMapInfoChainSubset
transMapInfoStaticLoad	hg/lib/transMapInfo.c	/^void transMapInfoStaticLoad(char **row, struct transMapInfo *ret)$/;"	f
transMapInfoSyn	hg/inc/transMapInfo.h	/^    transMapInfoSyn = 2,$/;"	e	enum:transMapInfoChainSubset
transMapInfoTabOut	hg/inc/transMapInfo.h	63;"	d
transMapInfoTblSetting	hg/inc/transMapStuff.h	11;"	d
transMapInfoUnknown	hg/inc/transMapInfo.h	/^    transMapInfoUnknown = 0,$/;"	e	enum:transMapInfoChainSubset
transMapSrc	hg/inc/transMapSrc.h	/^struct transMapSrc$/;"	s
transMapSrcCommaIn	hg/lib/transMapSrc.c	/^struct transMapSrc *transMapSrcCommaIn(char **pS, struct transMapSrc *ret)$/;"	f
transMapSrcCommaOut	hg/inc/transMapSrc.h	62;"	d
transMapSrcFree	hg/lib/transMapSrc.c	/^void transMapSrcFree(struct transMapSrc **pEl)$/;"	f
transMapSrcFreeList	hg/lib/transMapSrc.c	/^void transMapSrcFreeList(struct transMapSrc **pList)$/;"	f
transMapSrcLoad	hg/lib/transMapSrc.c	/^struct transMapSrc *transMapSrcLoad(char **row)$/;"	f
transMapSrcLoadAll	hg/lib/transMapSrc.c	/^struct transMapSrc *transMapSrcLoadAll(char *fileName) $/;"	f
transMapSrcLoadAllByChar	hg/lib/transMapSrc.c	/^struct transMapSrc *transMapSrcLoadAllByChar(char *fileName, char chopper) $/;"	f
transMapSrcLoadAllByTab	hg/inc/transMapSrc.h	40;"	d
transMapSrcOutput	hg/lib/transMapSrc.c	/^void transMapSrcOutput(struct transMapSrc *el, FILE *f, char sep, char lastSep) $/;"	f
transMapSrcQuery	hg/lib/transMapSrc.c	/^struct transMapSrc *transMapSrcQuery(struct sqlConnection *srcConn,$/;"	f
transMapSrcStaticLoad	hg/lib/transMapSrc.c	/^void transMapSrcStaticLoad(char **row, struct transMapSrc *ret)$/;"	f
transMapSrcTabOut	hg/inc/transMapSrc.h	59;"	d
transMapSrcTblSetting	hg/inc/transMapStuff.h	12;"	d
transMapStuff_h	hg/inc/transMapStuff.h	4;"	d
transRegCode	hg/inc/transRegCode.h	/^struct transRegCode$/;"	s
transRegCodeCommaIn	hg/lib/transRegCode.c	/^struct transRegCode *transRegCodeCommaIn(char **pS, struct transRegCode *ret)$/;"	f
transRegCodeCommaOut	hg/inc/transRegCode.h	61;"	d
transRegCodeCondition	hg/inc/transRegCodeCondition.h	/^struct transRegCodeCondition$/;"	s
transRegCodeConditionCommaIn	hg/lib/transRegCodeCondition.c	/^struct transRegCodeCondition *transRegCodeConditionCommaIn(char **pS, struct transRegCodeCondition *ret)$/;"	f
transRegCodeConditionCommaOut	hg/inc/transRegCodeCondition.h	56;"	d
transRegCodeConditionFree	hg/lib/transRegCodeCondition.c	/^void transRegCodeConditionFree(struct transRegCodeCondition **pEl)$/;"	f
transRegCodeConditionFreeList	hg/lib/transRegCodeCondition.c	/^void transRegCodeConditionFreeList(struct transRegCodeCondition **pList)$/;"	f
transRegCodeConditionLoad	hg/lib/transRegCodeCondition.c	/^struct transRegCodeCondition *transRegCodeConditionLoad(char **row)$/;"	f
transRegCodeConditionLoadAll	hg/lib/transRegCodeCondition.c	/^struct transRegCodeCondition *transRegCodeConditionLoadAll(char *fileName) $/;"	f
transRegCodeConditionLoadAllByChar	hg/lib/transRegCodeCondition.c	/^struct transRegCodeCondition *transRegCodeConditionLoadAllByChar(char *fileName, char chopper) $/;"	f
transRegCodeConditionLoadAllByTab	hg/inc/transRegCodeCondition.h	34;"	d
transRegCodeConditionOutput	hg/lib/transRegCodeCondition.c	/^void transRegCodeConditionOutput(struct transRegCodeCondition *el, FILE *f, char sep, char lastSep) $/;"	f
transRegCodeConditionStaticLoad	hg/lib/transRegCodeCondition.c	/^void transRegCodeConditionStaticLoad(char **row, struct transRegCodeCondition *ret)$/;"	f
transRegCodeConditionTabOut	hg/inc/transRegCodeCondition.h	53;"	d
transRegCodeFree	hg/lib/transRegCode.c	/^void transRegCodeFree(struct transRegCode **pEl)$/;"	f
transRegCodeFreeList	hg/lib/transRegCode.c	/^void transRegCodeFreeList(struct transRegCode **pList)$/;"	f
transRegCodeLoad	hg/lib/transRegCode.c	/^struct transRegCode *transRegCodeLoad(char **row)$/;"	f
transRegCodeLoadAll	hg/lib/transRegCode.c	/^struct transRegCode *transRegCodeLoadAll(char *fileName) $/;"	f
transRegCodeLoadAllByChar	hg/lib/transRegCode.c	/^struct transRegCode *transRegCodeLoadAllByChar(char *fileName, char chopper) $/;"	f
transRegCodeLoadAllByTab	hg/inc/transRegCode.h	39;"	d
transRegCodeOutput	hg/lib/transRegCode.c	/^void transRegCodeOutput(struct transRegCode *el, FILE *f, char sep, char lastSep) $/;"	f
transRegCodeProbe	hg/inc/transRegCodeProbe.h	/^struct transRegCodeProbe$/;"	s
transRegCodeProbeCommaIn	hg/lib/transRegCodeProbe.c	/^struct transRegCodeProbe *transRegCodeProbeCommaIn(char **pS, struct transRegCodeProbe *ret)$/;"	f
transRegCodeProbeCommaOut	hg/inc/transRegCodeProbe.h	57;"	d
transRegCodeProbeFree	hg/lib/transRegCodeProbe.c	/^void transRegCodeProbeFree(struct transRegCodeProbe **pEl)$/;"	f
transRegCodeProbeFreeList	hg/lib/transRegCodeProbe.c	/^void transRegCodeProbeFreeList(struct transRegCodeProbe **pList)$/;"	f
transRegCodeProbeLoad	hg/lib/transRegCodeProbe.c	/^struct transRegCodeProbe *transRegCodeProbeLoad(char **row)$/;"	f
transRegCodeProbeLoadAll	hg/lib/transRegCodeProbe.c	/^struct transRegCodeProbe *transRegCodeProbeLoadAll(char *fileName) $/;"	f
transRegCodeProbeLoadAllByChar	hg/lib/transRegCodeProbe.c	/^struct transRegCodeProbe *transRegCodeProbeLoadAllByChar(char *fileName, char chopper) $/;"	f
transRegCodeProbeLoadAllByTab	hg/inc/transRegCodeProbe.h	35;"	d
transRegCodeProbeOutput	hg/lib/transRegCodeProbe.c	/^void transRegCodeProbeOutput(struct transRegCodeProbe *el, FILE *f, char sep, char lastSep) $/;"	f
transRegCodeProbeTabOut	hg/inc/transRegCodeProbe.h	54;"	d
transRegCodeStaticLoad	hg/lib/transRegCode.c	/^void transRegCodeStaticLoad(char **row, struct transRegCode *ret)$/;"	f
transRegCodeTabOut	hg/inc/transRegCode.h	58;"	d
transServerList	inc/gfWebLib.h	/^    struct gfServerAt *transServerList;  \/* List of translated servers. *\/$/;"	m	struct:gfWebConfig	typeref:struct:gfWebConfig::gfServerAt
transcript	hg/inc/gencodeIntron.h	/^    char *transcript;	\/* Transcript_id from GTF *\/$/;"	m	struct:gencodeIntron
transcript	hg/inc/snp125CodingCoordless.h	/^    char *transcript;	\/* Accession of the transcript modified by SNP *\/$/;"	m	struct:snp125CodingCoordless
transcript	hg/inc/soterm.h	/^	    char *transcript;$/;"	m	struct:soCall::__anon12::__anon13
transcript	hg/inc/soterm.h	/^	    char *transcript;$/;"	m	struct:soCall::__anon12::codingChange
transcript	hg/inc/yaleGencodeAssoc.h	/^    char *transcript;	\/* Gencode transcript id *\/$/;"	m	struct:yaleGencodeAssoc
transcriptClustId	hg/inc/affyAllExonProbe.h	/^    char *transcriptClustId;	\/* Transcript cluster this exon probe belongs to *\/$/;"	m	struct:affyAllExonProbe
transcriptCount	hg/inc/hgGene.h	/^    unsigned transcriptCount;	\/* Number of transcripts *\/$/;"	m	struct:hgGene
transcriptCount	inc/hgGene.h	/^    unsigned transcriptCount;	\/* Number of transcripts *\/$/;"	m	struct:hgGene
transcriptId	hg/inc/fbTables.h	/^    char *transcriptId;	\/* BDGP Transcript ID *\/$/;"	m	struct:fbTranscript
transcriptId	hg/inc/vegaInfo.h	/^    char *transcriptId;	\/* Vega transcript ID *\/$/;"	m	struct:vegaInfo
transcriptId	hg/inc/vegaInfoZfish.h	/^    char *transcriptId;	\/* Vega transcript ID *\/$/;"	m	struct:vegaInfoZfish
transcriptList	inc/ens.h	/^    struct ensTranscript *transcriptList; \/* List of ways to transcribe and splice. *\/$/;"	m	struct:ensGene	typeref:struct:ensGene::ensTranscript
transcriptName	inc/gff.h	/^    char *transcriptName; \/* transcript_name or NULL in GTF, NULL in GFF. Not allocated here. *\/$/;"	m	struct:gffLine
transcriptType	hg/inc/gencodeGeneClass.h	/^    char *transcriptType;	\/* Transcript type for Gencode gene *\/$/;"	m	struct:gencodeGeneClass
transcripts	hg/inc/hgGene.h	/^    unsigned *transcripts;	\/* Array of transcripts *\/$/;"	m	struct:hgGene
transcripts	inc/hgGene.h	/^    unsigned *transcripts;	\/* Array of transcripts *\/$/;"	m	struct:hgGene
transitionCost	jkOwnLib/xensmall.c	/^static int transitionCost(double prob)$/;"	f	file:
transitionsB	hg/inc/genomicSuperDups.h	/^    unsigned transitionsB;	\/* number of transitions *\/$/;"	m	struct:genomicSuperDups
translateProtein	hg/lib/mafGene.c	/^static void translateProtein(struct speciesInfo *si)$/;"	f	file:
translateSeq	lib/dnaseq.c	/^aaSeq *translateSeq(struct dnaSeq *inSeq, unsigned offset, boolean stop)$/;"	f
translateSeqN	lib/dnaseq.c	/^aaSeq *translateSeqN(struct dnaSeq *inSeq, unsigned offset, unsigned inSize, boolean stop)$/;"	f
transparentColorIndex	lib/gifwrite.c	/^    unsigned char transparentColorIndex;$/;"	m	struct:gif_gce	file:
transposeExpDataMatrix	hg/lib/microarray.c	/^void transposeExpDataMatrix(struct maExpDataMatrix **pMat)$/;"	f
transversionsB	hg/inc/genomicSuperDups.h	/^    unsigned transversionsB;	\/* number of transversions *\/$/;"	m	struct:genomicSuperDups
trashDir	lib/portimpl.c	/^char *trashDir()$/;"	f
trashDir	lib/portimpl.h	/^    char * (*trashDir)();$/;"	m	struct:webServerSpecific
trashDirFile	hg/lib/trashDir.c	/^void trashDirFile(struct tempName *tn, char *dirName, char *base, char *suffix)$/;"	f
trashDirReusableFile	hg/lib/trashDir.c	/^boolean trashDirReusableFile(struct tempName *tn, char *dirName, char *base, char *suffix)$/;"	f
traverse	inc/itsa.h	/^    bits32 *traverse;	\/* Offsets to position in array where current prefix changes. *\/$/;"	m	struct:itsa
traverse	inc/sufx.h	/^    bits32 *traverse;	\/* Offsets to position in array where current prefix changes. *\/$/;"	m	struct:sufx
traverseGeneGraph	hg/lib/geneGraph.c	/^void traverseGeneGraph(struct geneGraph *gg, int cStart, int cEnd, GgTransOut output)$/;"	f
tree	hg/inc/geneTree.h	/^    char *tree;	\/* Newick format of phylogenetic tree *\/$/;"	m	struct:geneTree
tree	hg/inc/genomeRangeTreeFile.h	/^    struct genomeRangeTree *tree;$/;"	m	struct:genomeRangeTreeFile	typeref:struct:genomeRangeTreeFile::genomeRangeTree
treeNodeType	hg/inc/trackDb.h	/^    char treeNodeType;          \/* bit map containing defining supertrack, composite and children of same (may be parent & child) *\/$/;"	m	struct:trackDb
trfRatio	hg/inc/pseudoGeneLink.h	/^    float trfRatio;	\/* ratio of tandem repeats *\/$/;"	m	struct:pseudoGeneLink
trimAlignment	lib/psl.c	/^static void trimAlignment(struct psl* psl, char** qStrPtr, char** tStrPtr,$/;"	f	file:
trimAlis	jkOwnLib/fuzzyFind.c	/^static struct ffAli *trimAlis(struct ffAli *aliList)$/;"	f	file:
trimEmptyEdges	hg/lib/ggGraph.c	/^static void trimEmptyEdges(struct geneGraph *gg)$/;"	f	file:
trimFlakyEnds	jkOwnLib/ffSeedExtend.c	/^static struct ffAli *trimFlakyEnds(struct dnaSeq *qSeq, struct dnaSeq *tSeq,$/;"	f	file:
trimGapPenalty	jkOwnLib/ffSeedExtend.c	/^static int trimGapPenalty(int hGap, int nGap, char *iStart, char *iEnd, int orientation)$/;"	f	file:
trimLastChar	lib/common.c	/^void trimLastChar(char *s)$/;"	f
trimSpaces	lib/common.c	/^char *trimSpaces(char *s)$/;"	f
tripleCanFollow	jkOwnLib/supStitch.c	/^boolean tripleCanFollow(struct ffAli *a, struct ffAli *b, aaSeq *qSeq, struct trans3 *t3List)$/;"	f
trix	inc/trix.h	/^struct trix$/;"	s
trixAddToIxx	lib/trix.c	/^void trixAddToIxx(struct trix *trix, off_t pos, char *prefix)$/;"	f
trixClose	lib/trix.c	/^void trixClose(struct trix **pTrix)$/;"	f
trixCopyToPrefix	lib/trix.c	/^void trixCopyToPrefix(char *word, char *prefix)$/;"	f
trixFindIndexStartLine	lib/trix.c	/^static off_t trixFindIndexStartLine(struct trix *trix, char *word)$/;"	f	file:
trixHitPos	lib/trix.c	/^struct trixHitPos $/;"	s	file:
trixHitPosCmp	lib/trix.c	/^int trixHitPosCmp(struct trixHitPos *a, struct trixHitPos *b)$/;"	f
trixHitPosFree	lib/trix.c	/^static void trixHitPosFree(struct trixHitPos **pPos)$/;"	f	file:
trixHitPosFreeList	lib/trix.c	/^static void trixHitPosFreeList(struct trixHitPos **pList)$/;"	f	file:
trixIxx	lib/trix.c	/^struct trixIxx$/;"	s	file:
trixNew	lib/trix.c	/^struct trix *trixNew()$/;"	f
trixOpen	lib/trix.c	/^struct trix *trixOpen(char *ixFile)$/;"	f
trixParseHitList	lib/trix.c	/^static struct trixHitPos *trixParseHitList(char *hitWord, char *hitString,$/;"	f	file:
trixPrefixSize	inc/trix.h	25;"	d
trixSearch	lib/trix.c	/^struct trixSearchResult *trixSearch(struct trix *trix, int wordCount, char **words,$/;"	f
trixSearchResult	inc/trix.h	/^struct trixSearchResult$/;"	s
trixSearchResultCmp	lib/trix.c	/^int trixSearchResultCmp(const void *va, const void *vb)$/;"	f
trixSearchResultFree	lib/trix.c	/^void trixSearchResultFree(struct trixSearchResult **pTsr)$/;"	f
trixSearchResultFreeList	lib/trix.c	/^void trixSearchResultFreeList(struct trixSearchResult **pList)$/;"	f
trixSearchWordResults	lib/trix.c	/^struct trixWordResult *trixSearchWordResults(struct trix *trix, $/;"	f
trixWordResult	lib/trix.c	/^struct trixWordResult$/;"	s	file:
trixWordResultFree	lib/trix.c	/^static void trixWordResultFree(struct trixWordResult **pTwr)$/;"	f	file:
trixWordResultFreeList	lib/trix.c	/^static void trixWordResultFreeList(struct trixWordResult **pList)$/;"	f	file:
trnaScore	hg/inc/tRNAs.h	/^    float trnaScore;	\/* tRNAScanSE score *\/$/;"	m	struct:tRNAs
trnaTarget	hg/inc/rnaHybridization.h	/^    char *trnaTarget;	\/*  *\/$/;"	m	struct:rnaHybridization
trnaUrl	hg/inc/tRNAs.h	/^    char *trnaUrl;	\/* GtRNAdb tRNA alignment URL *\/$/;"	m	struct:tRNAs
trueFalseString	lib/common.c	/^char *trueFalseString(boolean b)$/;"	f
trueName	hg/inc/stsAlias.h	/^    char *trueName;	\/* Official UCSC name for marker *\/$/;"	m	struct:stsAlias
truncatef	hg/lib/hgFind.c	/^void truncatef(char *buf, int size, char *format, ...)$/;"	f
trwDump	lib/trix.c	/^void trwDump(struct trixWordResult *twr)$/;"	f
tryToFixSoftEndAlignment	hg/lib/ggGraph.c	/^void tryToFixSoftEndAlignment(struct geneGraph *gg, struct ggMrnaCluster *mc, $/;"	f
tryToFixSoftStartAlignment	hg/lib/ggGraph.c	/^void tryToFixSoftStartAlignment(struct geneGraph *gg, struct ggMrnaCluster *mc, $/;"	f
tscId	hg/inc/affy10KDetails.h	/^    char *tscId;	\/* TSC identifier (some are null) *\/$/;"	m	struct:affy10KDetails
tsr	hg/lib/hgFind.c	/^    struct trixSearchResult *tsr;	\/* Basically a gene symbol *\/$/;"	m	struct:tsrPos	typeref:struct:tsrPos::trixSearchResult	file:
tsrPos	hg/lib/hgFind.c	/^struct tsrPos$/;"	s	file:
tvCompare	hg/lib/hui.c	/^int tvCompare(enum trackVisibility a, enum trackVisibility b)$/;"	f
tvConvertToNumericOrder	hg/lib/hui.c	/^int tvConvertToNumericOrder(enum trackVisibility v)$/;"	f
tvDense	hg/inc/hui.h	/^    tvDense=1,          \/* Squish it together. *\/$/;"	e	enum:trackVisibility
tvFull	hg/inc/hui.h	/^    tvFull=2,           \/* Expand it out. *\/$/;"	e	enum:trackVisibility
tvHide	hg/inc/hui.h	/^    tvHide=0, 		\/* Hide it. *\/$/;"	e	enum:trackVisibility
tvMin	hg/lib/hui.c	/^enum trackVisibility tvMin(enum trackVisibility a, enum trackVisibility b)$/;"	f
tvPack	hg/inc/hui.h	/^    tvPack=3,           \/* Zig zag it up and down. *\/$/;"	e	enum:trackVisibility
tvShow	hg/inc/hui.h	178;"	d
tvSquish	hg/inc/hui.h	/^    tvSquish=4,         \/* Pack with thin boxes and no labels. *\/$/;"	e	enum:trackVisibility
twoBit	inc/twoBit.h	/^struct twoBit$/;"	s
twoBit	lib/dnaLoad.c	/^    struct twoBitFile *twoBit; \/* Two bit file if any. *\/$/;"	m	struct:dnaLoadStack	typeref:struct:dnaLoadStack::twoBitFile	file:
twoBitCheckTotalSize	jkOwnLib/genoFind.c	/^static long long twoBitCheckTotalSize(struct twoBitFile *tbf)$/;"	f	file:
twoBitClose	lib/twoBit.c	/^void twoBitClose(struct twoBitFile **pTbf)$/;"	f
twoBitFile	inc/twoBit.h	/^struct twoBitFile$/;"	s
twoBitFree	lib/twoBit.c	/^void twoBitFree(struct twoBit **pTwoBit)$/;"	f
twoBitFreeList	lib/twoBit.c	/^void twoBitFreeList(struct twoBit **pList)$/;"	f
twoBitFromDnaSeq	lib/twoBit.c	/^struct twoBit *twoBitFromDnaSeq(struct dnaSeq *seq, boolean doMask)$/;"	f
twoBitFromFile	lib/twoBit.c	/^struct twoBit *twoBitFromFile(char *fileName)$/;"	f
twoBitIndex	inc/twoBit.h	/^struct twoBitIndex$/;"	s
twoBitIsFile	lib/twoBit.c	/^boolean twoBitIsFile(char *fileName)$/;"	f
twoBitIsFileOrRange	lib/twoBit.c	/^boolean twoBitIsFileOrRange(char *spec)$/;"	f
twoBitIsRange	lib/twoBit.c	/^boolean twoBitIsRange(char *rangeSpec)$/;"	f
twoBitIsSpec	lib/twoBit.c	/^boolean twoBitIsSpec(char *spec)$/;"	f
twoBitLoadAll	lib/twoBit.c	/^struct dnaSeq *twoBitLoadAll(char *spec)$/;"	f
twoBitOneFromFile	lib/twoBit.c	/^struct twoBit *twoBitOneFromFile(struct twoBitFile *tbf, char *name)$/;"	f
twoBitOpen	lib/twoBit.c	/^struct twoBitFile *twoBitOpen(char *fileName)$/;"	f
twoBitOpenExternalBptIndex	lib/twoBit.c	/^struct twoBitFile *twoBitOpenExternalBptIndex(char *twoBitName, char *bptName)$/;"	f
twoBitOpenReadHeader	lib/twoBit.c	/^static struct twoBitFile *twoBitOpenReadHeader(char *fileName)$/;"	f	file:
twoBitOutNBeds	lib/twoBit.c	/^void twoBitOutNBeds(struct twoBitFile *tbf, char *seqName, FILE *outF)$/;"	f
twoBitParseRange	lib/twoBit.c	/^boolean twoBitParseRange(char *rangeSpec, char **retFile, $/;"	f
twoBitReadSeqFrag	lib/twoBit.c	/^struct dnaSeq *twoBitReadSeqFrag(struct twoBitFile *tbf, char *name,$/;"	f
twoBitReadSeqFragExt	lib/twoBit.c	/^struct dnaSeq *twoBitReadSeqFragExt(struct twoBitFile *tbf, char *name,$/;"	f
twoBitReadSeqFragLower	lib/twoBit.c	/^struct dnaSeq *twoBitReadSeqFragLower(struct twoBitFile *tbf, char *name,$/;"	f
twoBitSeekTo	lib/twoBit.c	/^static void twoBitSeekTo(struct twoBitFile *tbf, char *name)$/;"	f	file:
twoBitSeqFromBed	hg/lib/annoGratorGpVar.c	/^struct dnaSeq *twoBitSeqFromBed(struct twoBitFile *tbf, struct bed *bed)$/;"	f
twoBitSeqNames	lib/twoBit.c	/^struct slName *twoBitSeqNames(char *fileName)$/;"	f
twoBitSeqSize	lib/twoBit.c	/^int twoBitSeqSize(struct twoBitFile *tbf, char *name)$/;"	f
twoBitSeqSizeNoNs	lib/twoBit.c	/^int twoBitSeqSizeNoNs(struct twoBitFile *tbf, char *seqName)$/;"	f
twoBitSeqSpec	inc/twoBit.h	/^struct twoBitSeqSpec$/;"	s
twoBitSig	inc/sig.h	59;"	d
twoBitSizeInFile	lib/twoBit.c	/^static int twoBitSizeInFile(struct twoBit *twoBit)$/;"	f	file:
twoBitSpec	inc/twoBit.h	/^struct twoBitSpec$/;"	s
twoBitSpecFree	lib/twoBit.c	/^void twoBitSpecFree(struct twoBitSpec **specPtr)$/;"	f
twoBitSpecNew	lib/twoBit.c	/^struct twoBitSpec *twoBitSpecNew(char *specStr)$/;"	f
twoBitSpecNewFile	lib/twoBit.c	/^struct twoBitSpec *twoBitSpecNewFile(char *twoBitFile, char *specFile)$/;"	f
twoBitSwapSig	inc/sig.h	63;"	d
twoBitTotalSize	lib/twoBit.c	/^long long twoBitTotalSize(struct twoBitFile *tbf)$/;"	f
twoBitWriteHeader	lib/twoBit.c	/^void twoBitWriteHeader(struct twoBit *twoBitList, FILE *f)$/;"	f
twoBitWriteOne	lib/twoBit.c	/^void twoBitWriteOne(struct twoBit *twoBit, FILE *f)$/;"	f
txAccFromTempName	hg/lib/txCommon.c	/^char *txAccFromTempName(char *tempName)$/;"	f
txArray	hg/inc/txCluster.h	/^    char **txArray;	\/* Array of transcripts *\/$/;"	m	struct:txCluster
txCluster	hg/inc/txCluster.h	/^struct txCluster$/;"	s
txClusterCommaIn	hg/lib/txCluster.c	/^struct txCluster *txClusterCommaIn(char **pS, struct txCluster *ret)$/;"	f
txClusterCommaOut	hg/inc/txCluster.h	61;"	d
txClusterFree	hg/lib/txCluster.c	/^void txClusterFree(struct txCluster **pEl)$/;"	f
txClusterFreeList	hg/lib/txCluster.c	/^void txClusterFreeList(struct txCluster **pList)$/;"	f
txClusterLoad	hg/lib/txCluster.c	/^struct txCluster *txClusterLoad(char **row)$/;"	f
txClusterLoadAll	hg/lib/txCluster.c	/^struct txCluster *txClusterLoadAll(char *fileName) $/;"	f
txClusterLoadAllByChar	hg/lib/txCluster.c	/^struct txCluster *txClusterLoadAllByChar(char *fileName, char chopper) $/;"	f
txClusterLoadAllByTab	hg/inc/txCluster.h	39;"	d
txClusterOutput	hg/lib/txCluster.c	/^void txClusterOutput(struct txCluster *el, FILE *f, char sep, char lastSep) $/;"	f
txClusterTabOut	hg/inc/txCluster.h	58;"	d
txCount	hg/inc/txCluster.h	/^    int txCount;	\/* Count of transcripts *\/$/;"	m	struct:txCluster
txEdge	hg/inc/txGraph.h	/^struct txEdge$/;"	s
txEdgeBed	hg/inc/txEdgeBed.h	/^struct txEdgeBed$/;"	s
txEdgeBedCommaIn	hg/lib/txEdgeBed.c	/^struct txEdgeBed *txEdgeBedCommaIn(char **pS, struct txEdgeBed *ret)$/;"	f
txEdgeBedCommaOut	hg/inc/txEdgeBed.h	68;"	d
txEdgeBedExon	hg/inc/txEdgeBed.h	/^    txEdgeBedExon = 0,$/;"	e	enum:txEdgeBedType
txEdgeBedFree	hg/lib/txEdgeBed.c	/^void txEdgeBedFree(struct txEdgeBed **pEl)$/;"	f
txEdgeBedFreeList	hg/lib/txEdgeBed.c	/^void txEdgeBedFreeList(struct txEdgeBed **pList)$/;"	f
txEdgeBedIntron	hg/inc/txEdgeBed.h	/^    txEdgeBedIntron = 1,$/;"	e	enum:txEdgeBedType
txEdgeBedLoad	hg/lib/txEdgeBed.c	/^struct txEdgeBed *txEdgeBedLoad(char **row)$/;"	f
txEdgeBedLoadAll	hg/lib/txEdgeBed.c	/^struct txEdgeBed *txEdgeBedLoadAll(char *fileName) $/;"	f
txEdgeBedLoadAllByChar	hg/lib/txEdgeBed.c	/^struct txEdgeBed *txEdgeBedLoadAllByChar(char *fileName, char chopper) $/;"	f
txEdgeBedLoadAllByTab	hg/inc/txEdgeBed.h	46;"	d
txEdgeBedOutput	hg/lib/txEdgeBed.c	/^void txEdgeBedOutput(struct txEdgeBed *el, FILE *f, char sep, char lastSep) $/;"	f
txEdgeBedStaticLoad	hg/lib/txEdgeBed.c	/^void txEdgeBedStaticLoad(char **row, struct txEdgeBed *ret)$/;"	f
txEdgeBedTabOut	hg/inc/txEdgeBed.h	65;"	d
txEdgeBedType	hg/inc/txEdgeBed.h	/^enum txEdgeBedType$/;"	g
txEdgeCommaIn	hg/lib/txGraph.c	/^struct txEdge *txEdgeCommaIn(char **pS, struct txEdge *ret)$/;"	f
txEdgeCommaOut	hg/inc/txGraph.h	118;"	d
txEdgeFree	hg/lib/txGraph.c	/^void txEdgeFree(struct txEdge **pEl)$/;"	f
txEdgeFreeList	hg/lib/txGraph.c	/^void txEdgeFreeList(struct txEdge **pList)$/;"	f
txEdgeOrtho	hg/inc/txEdgeOrtho.h	/^struct txEdgeOrtho$/;"	s
txEdgeOrthoCommaIn	hg/lib/txEdgeOrtho.c	/^struct txEdgeOrtho *txEdgeOrthoCommaIn(char **pS, struct txEdgeOrtho *ret)$/;"	f
txEdgeOrthoCommaOut	hg/inc/txEdgeOrtho.h	78;"	d
txEdgeOrthoExon	hg/inc/txEdgeOrtho.h	/^    txEdgeOrthoExon = 0,$/;"	e	enum:txEdgeOrthoType
txEdgeOrthoFree	hg/lib/txEdgeOrtho.c	/^void txEdgeOrthoFree(struct txEdgeOrtho **pEl)$/;"	f
txEdgeOrthoFreeList	hg/lib/txEdgeOrtho.c	/^void txEdgeOrthoFreeList(struct txEdgeOrtho **pList)$/;"	f
txEdgeOrthoIntron	hg/inc/txEdgeOrtho.h	/^    txEdgeOrthoIntron = 1,$/;"	e	enum:txEdgeOrthoType
txEdgeOrthoLoad	hg/lib/txEdgeOrtho.c	/^struct txEdgeOrtho *txEdgeOrthoLoad(char **row)$/;"	f
txEdgeOrthoLoadAll	hg/lib/txEdgeOrtho.c	/^struct txEdgeOrtho *txEdgeOrthoLoadAll(char *fileName) $/;"	f
txEdgeOrthoLoadAllByChar	hg/lib/txEdgeOrtho.c	/^struct txEdgeOrtho *txEdgeOrthoLoadAllByChar(char *fileName, char chopper) $/;"	f
txEdgeOrthoLoadAllByTab	hg/inc/txEdgeOrtho.h	56;"	d
txEdgeOrthoOutput	hg/lib/txEdgeOrtho.c	/^void txEdgeOrthoOutput(struct txEdgeOrtho *el, FILE *f, char sep, char lastSep) $/;"	f
txEdgeOrthoStaticLoad	hg/lib/txEdgeOrtho.c	/^void txEdgeOrthoStaticLoad(char **row, struct txEdgeOrtho *ret)$/;"	f
txEdgeOrthoTabOut	hg/inc/txEdgeOrtho.h	75;"	d
txEdgeOrthoType	hg/inc/txEdgeOrtho.h	/^enum txEdgeOrthoType$/;"	g
txEdgeOutput	hg/lib/txGraph.c	/^void txEdgeOutput(struct txEdge *el, FILE *f, char sep, char lastSep) $/;"	f
txEdgeTabOut	hg/inc/txGraph.h	115;"	d
txEnd	hg/inc/genePred.h	/^    unsigned txEnd;	\/* Transcription end position *\/$/;"	m	struct:genePred
txEnd	hg/inc/sangerGene.h	/^    unsigned txEnd;	\/* Transcription end position *\/$/;"	m	struct:sangerGene
txEvidence	hg/inc/txGraph.h	/^struct txEvidence$/;"	s
txEvidenceCommaIn	hg/lib/txGraph.c	/^struct txEvidence *txEvidenceCommaIn(char **pS, struct txEvidence *ret)$/;"	f
txEvidenceCommaOut	hg/inc/txGraph.h	150;"	d
txEvidenceFree	hg/lib/txGraph.c	/^void txEvidenceFree(struct txEvidence **pEl)$/;"	f
txEvidenceFreeList	hg/lib/txGraph.c	/^void txEvidenceFreeList(struct txEvidence **pList)$/;"	f
txEvidenceOutput	hg/lib/txGraph.c	/^void txEvidenceOutput(struct txEvidence *el, FILE *f, char sep, char lastSep) $/;"	f
txEvidenceTabOut	hg/inc/txGraph.h	147;"	d
txGeneAccFromId	hg/lib/txCommon.c	/^void txGeneAccFromId(int id, char acc[16])$/;"	f
txGraph	hg/inc/txEdgeOrtho.h	/^    char *txGraph;	\/* Transcription graph name in this organism *\/$/;"	m	struct:txEdgeOrtho
txGraph	hg/inc/txGraph.h	/^struct txGraph$/;"	s
txGraphCommaIn	hg/lib/txGraph.c	/^struct txGraph *txGraphCommaIn(char **pS, struct txGraph *ret)$/;"	f
txGraphCommaOut	hg/inc/txGraph.h	61;"	d
txGraphFree	hg/lib/txGraph.c	/^void txGraphFree(struct txGraph **pEl)$/;"	f
txGraphFreeList	hg/lib/txGraph.c	/^void txGraphFreeList(struct txGraph **pList)$/;"	f
txGraphLoad	hg/lib/txGraph.c	/^struct txGraph *txGraphLoad(char **row)$/;"	f
txGraphLoadAll	hg/lib/txGraph.c	/^struct txGraph *txGraphLoadAll(char *fileName) $/;"	f
txGraphLoadAllByChar	hg/lib/txGraph.c	/^struct txGraph *txGraphLoadAllByChar(char *fileName, char chopper) $/;"	f
txGraphLoadAllByTab	hg/inc/txGraph.h	39;"	d
txGraphOutput	hg/lib/txGraph.c	/^void txGraphOutput(struct txGraph *el, FILE *f, char sep, char lastSep) $/;"	f
txGraphTabOut	hg/inc/txGraph.h	58;"	d
txInfo	hg/inc/txInfo.h	/^struct txInfo$/;"	s
txInfoCodingScore	hg/lib/txInfo.c	/^double txInfoCodingScore(struct txInfo *info, boolean boostRefSeq)$/;"	f
txInfoCommaIn	hg/lib/txInfo.c	/^struct txInfo *txInfoCommaIn(char **pS, struct txInfo *ret)$/;"	f
txInfoCommaOut	hg/inc/txInfo.h	77;"	d
txInfoFree	hg/lib/txInfo.c	/^void txInfoFree(struct txInfo **pEl)$/;"	f
txInfoFreeList	hg/lib/txInfo.c	/^void txInfoFreeList(struct txInfo **pList)$/;"	f
txInfoLoad	hg/lib/txInfo.c	/^struct txInfo *txInfoLoad(char **row)$/;"	f
txInfoLoadAll	hg/lib/txInfo.c	/^struct txInfo *txInfoLoadAll(char *fileName) $/;"	f
txInfoLoadAllByChar	hg/lib/txInfo.c	/^struct txInfo *txInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
txInfoLoadAllByTab	hg/inc/txInfo.h	55;"	d
txInfoOutput	hg/lib/txInfo.c	/^void txInfoOutput(struct txInfo *el, FILE *f, char sep, char lastSep) $/;"	f
txInfoStaticLoad	hg/lib/txInfo.c	/^void txInfoStaticLoad(char **row, struct txInfo *ret)$/;"	f
txInfoTabOut	hg/inc/txInfo.h	74;"	d
txRnaAccs	hg/inc/txRnaAccs.h	/^struct txRnaAccs$/;"	s
txRnaAccsCommaIn	hg/lib/txRnaAccs.c	/^struct txRnaAccs *txRnaAccsCommaIn(char **pS, struct txRnaAccs *ret)$/;"	f
txRnaAccsCommaOut	hg/inc/txRnaAccs.h	54;"	d
txRnaAccsFree	hg/lib/txRnaAccs.c	/^void txRnaAccsFree(struct txRnaAccs **pEl)$/;"	f
txRnaAccsFreeList	hg/lib/txRnaAccs.c	/^void txRnaAccsFreeList(struct txRnaAccs **pList)$/;"	f
txRnaAccsLoad	hg/lib/txRnaAccs.c	/^struct txRnaAccs *txRnaAccsLoad(char **row)$/;"	f
txRnaAccsLoadAll	hg/lib/txRnaAccs.c	/^struct txRnaAccs *txRnaAccsLoadAll(char *fileName) $/;"	f
txRnaAccsLoadAllByChar	hg/lib/txRnaAccs.c	/^struct txRnaAccs *txRnaAccsLoadAllByChar(char *fileName, char chopper) $/;"	f
txRnaAccsLoadAllByTab	hg/inc/txRnaAccs.h	32;"	d
txRnaAccsOutput	hg/lib/txRnaAccs.c	/^void txRnaAccsOutput(struct txRnaAccs *el, FILE *f, char sep, char lastSep) $/;"	f
txRnaAccsTabOut	hg/inc/txRnaAccs.h	51;"	d
txSource	hg/inc/txGraph.h	/^struct txSource$/;"	s
txSourceCommaIn	hg/lib/txGraph.c	/^struct txSource *txSourceCommaIn(char **pS, struct txSource *ret)$/;"	f
txSourceCommaOut	hg/inc/txGraph.h	176;"	d
txSourceFreeInternals	hg/lib/txGraph.c	/^void txSourceFreeInternals(struct txSource *array, int count)$/;"	f
txSourceOutput	hg/lib/txGraph.c	/^void txSourceOutput(struct txSource *el, FILE *f, char sep, char lastSep) $/;"	f
txSourceTabOut	hg/inc/txGraph.h	173;"	d
txStart	hg/inc/genePred.h	/^    unsigned txStart;	\/* Transcription start position *\/$/;"	m	struct:genePred
txStart	hg/inc/sangerGene.h	/^    unsigned txStart;	\/* Transcription start position *\/$/;"	m	struct:sangerGene
txVertex	hg/inc/txGraph.h	/^struct txVertex$/;"	s
txVertexCommaIn	hg/lib/txGraph.c	/^struct txVertex *txVertexCommaIn(char **pS, struct txVertex *ret)$/;"	f
txVertexCommaOut	hg/inc/txGraph.h	84;"	d
txVertexOutput	hg/lib/txGraph.c	/^void txVertexOutput(struct txVertex *el, FILE *f, char sep, char lastSep) $/;"	f
txVertexTabOut	hg/inc/txGraph.h	81;"	d
type	hg/inc/agpFrag.h	/^    char type[2];	\/* (P)redraft, (D)raft, (F)inished or (O)ther *\/$/;"	m	struct:agpFrag
type	hg/inc/agpGap.h	/^    char *type;	\/* contig, clone, fragment, etc. *\/$/;"	m	struct:agpGap
type	hg/inc/altGraphX.h	/^    int type;                   \/* Type of edge: ggExon, ggIntron, ggSJ, ggCassette. *\/$/;"	m	struct:spliceEdge
type	hg/inc/cgh.h	/^    unsigned type;	\/* 1 - overall average, 2 - tissue average, 3 - single tissue *\/$/;"	m	struct:cgh
type	hg/inc/chainNet.h	/^    char *type;    \/* top\/syn\/inv\/nonSyn *\/$/;"	m	struct:cnFill
type	hg/inc/chromInserts.h	/^    char *type;			\/* 'centromere' 'short_arm' etc. *\/$/;"	m	struct:bigInsert
type	hg/inc/columnInfo.h	/^    char *type;	\/* Column type, i.e. int, blob, varchar. *\/$/;"	m	struct:columnInfo
type	hg/inc/ctgPos2.h	/^    char type[2];	\/* (W)GS contig, (F)inished, (P)redraft, (D)raft, (O)ther *\/$/;"	m	struct:ctgPos2
type	hg/inc/dless.h	/^    char type[11];	\/* Type of prediction.  enum('conserved', 'gain', 'loss') *\/$/;"	m	struct:dless
type	hg/inc/ecAttribute.h	/^    char type[3];	\/* attribute type (see ecAttributeCodes) *\/$/;"	m	struct:ecAttribute
type	hg/inc/ecAttributeCode.h	/^    char type[3];	\/* attribute type *\/$/;"	m	struct:ecAttributeCode
type	hg/inc/flyBase2004Xref.h	/^    char *type;	\/* Annotation type (for noncoding only) *\/$/;"	m	struct:flyBase2004Xref
type	hg/inc/gbSeq.h	/^    enum gbSeqType type;	\/* Type of sequence *\/$/;"	m	struct:gbSeq	typeref:enum:gbSeq::gbSeqType
type	hg/inc/geneGraph.h	/^    UBYTE type;		\/* vertex type. *\/$/;"	m	struct:ggVertex
type	hg/inc/geneGraph.h	/^    enum ggEdgeType type;      \/* Type of vertex, ggExon, ggIntron, etc. *\/$/;"	m	struct:ggEdge	typeref:enum:ggEdge::ggEdgeType
type	hg/inc/hdb.h	/^    char *type;			\/* A guess at the trackDb type for this. *\/$/;"	m	struct:hTableInfo
type	hg/inc/hui.h	/^    enum fieldType type;        \/\/ string, int, float$/;"	m	struct:extraField	typeref:enum:extraField::fieldType
type	hg/inc/jksql.h	/^    char *type;           \/* type of field *\/$/;"	m	struct:sqlFieldInfo
type	hg/inc/jsHelper.h	/^    jsonElementType type;$/;"	m	struct:jsonElement
type	hg/inc/llaInfo.h	/^    char *type;	\/* Type of primer pair (ORF or intergenic) *\/$/;"	m	struct:llaInfo
type	hg/inc/microarray.h	/^    char *type;$/;"	m	struct:maGrouping
type	hg/inc/mysqlTableStatus.h	/^    char *type;	\/* Type - MyISAM, InnoDB, etc. *\/$/;"	m	struct:mysqlTableStatus
type	hg/inc/ncRna.h	/^    char *type;	\/* type of gene *\/$/;"	m	struct:ncRna
type	hg/inc/netAlign.h	/^    char *type;	\/* Syntenic type: gap\/top\/syn\/nonsyn\/inv *\/$/;"	m	struct:netAlign
type	hg/inc/omimTitle.h	/^    char type[2];	\/* Type (*, ^ or #) *\/$/;"	m	struct:omimTitle
type	hg/inc/pseudoGeneLink.h	/^    char *type;	\/* type of evidence *\/$/;"	m	struct:pseudoGeneLink
type	hg/inc/retroMrnaInfo.h	/^    char *type;	\/* type of evidence col15 *\/$/;"	m	struct:retroMrnaInfo
type	hg/inc/riken.h	/^    char *type;	\/* Required *\/$/;"	m	struct:rikenAltid
type	hg/inc/rnaGene.h	/^    char *type;	\/* Type - snRNA, rRNA, tRNA, etc. *\/$/;"	m	struct:rnaGene
type	hg/inc/scopDes.h	/^    char type[3];	\/* Type.  sf=superfamily, fa = family, etc. *\/$/;"	m	struct:scopDes
type	hg/inc/sgdDescription.h	/^    char *type;	\/* Type of feature from gff3 file *\/$/;"	m	struct:sgdDescription
type	hg/inc/sgdOther.h	/^    char *type;	\/* Feature type *\/$/;"	m	struct:sgdOther
type	hg/inc/snpMap.h	/^    char *type;	\/* SNP | INDEL | SEGMENTAL *\/$/;"	m	struct:snpMap
type	hg/inc/softPromoter.h	/^    char *type;	\/* TATA+ or TATAless currently *\/$/;"	m	struct:softPromoter
type	hg/inc/splignAlign.h	/^    char *type;	\/* type of blocks *\/$/;"	m	struct:splignAlign
type	hg/inc/stanMad.h	/^    char *type;	\/* Indicates whether an element is a control or cDNA. *\/$/;"	m	struct:stanMad
type	hg/inc/tableStatus.h	/^    char *type;	\/* How table stored: MyISAM\/INNOdb etc *\/$/;"	m	struct:tableStatus
type	hg/inc/trackDb.h	/^    char *type;	\/* Track type: bed, psl, genePred, etc. *\/$/;"	m	struct:trackDb
type	hg/inc/txEdgeBed.h	/^    enum txEdgeBedType type;	\/* edge type *\/$/;"	m	struct:txEdgeBed	typeref:enum:txEdgeBed::txEdgeBedType
type	hg/inc/txEdgeOrtho.h	/^    enum txEdgeOrthoType type;	\/* edge type *\/$/;"	m	struct:txEdgeOrtho	typeref:enum:txEdgeOrtho::txEdgeOrthoType
type	hg/inc/txGraph.h	/^    char *type;	\/* Type: refSeq, mrna, est, etc. *\/$/;"	m	struct:txSource
type	hg/inc/txGraph.h	/^    unsigned char type;	\/* Edge type *\/$/;"	m	struct:txEdge
type	hg/inc/txGraph.h	/^    unsigned char type;	\/* Vertex type - ggSoftStart, ggHardStart, etc. *\/$/;"	m	struct:txVertex
type	hg/inc/ucscRetroInfo.h	/^    char *type;	\/* type of evidence col15 *\/$/;"	m	struct:ucscRetroInfo
type	hg/inc/wgRna.h	/^    char *type;	\/* RNA type *\/$/;"	m	struct:wgRna
type	hg/lib/chromGraphFactory.c	/^    char *type;		\/* Type	string from UI *\/$/;"	m	struct:markerTypeRecognizer	file:
type	inc/asParse.h	/^    enum asTypes type;		   \/* Numeric ID of low level type. *\/$/;"	m	struct:asTypeInfo	typeref:enum:asTypeInfo::asTypes
type	inc/bwgInternal.h	/^    UBYTE type;		\/* Type byte. *\/$/;"	m	struct:bwgSectionHead
type	inc/bwgInternal.h	/^    enum bwgSectionType type;$/;"	m	struct:bwgSection	typeref:enum:bwgSection::bwgSectionType
type	inc/dtdParse.h	/^    char *type;			\/* Element type - CDATA, INT, FLOAT, etc. *\/$/;"	m	struct:dtdAttribute
type	inc/ens.h	/^    int type;                      \/* Index into analysis table describing type of feature. *\/$/;"	m	struct:ensFeature
type	inc/gff3.h	/^    char *type; \/* The type of the feature (previously called the "method").$/;"	m	struct:gff3Ann
type	inc/htmlPage.h	/^    char *type;			\/* Variable type. Not allocated here. *\/$/;"	m	struct:htmlFormVar
type	inc/kxTok.h	/^    enum kxTokType type;$/;"	m	struct:kxTok	typeref:enum:kxTok::kxTokType
type	inc/maf.h	/^    char *type;   \/\/ type of definition, one of constants below (not malloced)$/;"	m	struct:mafRegDef
type	inc/metaWig.h	/^    enum metaWigType type;$/;"	m	struct:metaWig	typeref:enum:metaWig::metaWigType
type	inc/rql.h	/^    enum rqlType type;		\/* Return type of this operation. *\/$/;"	m	struct:rqlParse	typeref:enum:rqlParse::rqlType
type	inc/rql.h	/^    enum rqlType type;$/;"	m	struct:rqlEval	typeref:enum:rqlEval::rqlType
type	inc/rudp.h	/^    bits8 type;		\/* One of rudpType above. *\/$/;"	m	struct:rudpHeader
type	inc/vcf.h	/^    enum vcfInfoType type;	\/\/ The type of values that follow the id$/;"	m	struct:vcfInfoDef	typeref:enum:vcfInfoDef::vcfInfoType
type	lib/keys.c	/^    enum keyExpType type;$/;"	m	struct:exp	typeref:enum:exp::keyExpType	file:
typeByte	inc/wormdna.h	/^    char typeByte;$/;"	m	struct:wormFeature
typeForGtFormat	lib/vcf.c	/^static enum vcfInfoType typeForGtFormat(struct vcfFile *vcff, const char *key)$/;"	f	file:
typeForInfoKey	lib/vcf.c	/^static enum vcfInfoType typeForInfoKey(struct vcfFile *vcff, const char *key)$/;"	f	file:
typeKnown	inc/gff.h	/^    bool typeKnown;		\/* Is 'isGtf' known? *\/$/;"	m	struct:gffFile
typeList	hg/inc/joiner.h	/^    struct joinerType *typeList;	\/* List of explicit table types. *\/$/;"	m	struct:joiner	typeref:struct:joiner::joinerType
typeName	inc/ens.h	/^    char *typeName;                \/* Subtype of type really. May be NULL. Not alloced here. *\/ $/;"	m	struct:ensFeature
typeOf	hg/inc/joiner.h	/^    char *typeOf;			\/* Parent type name if any. *\/$/;"	m	struct:joinerSet
typeSig	inc/bbiFile.h	/^    bits32 typeSig;		\/* bigBedSig or bigWigSig for now. *\/$/;"	m	struct:bbiFile
u1	lib/dnaMotif.c	/^static double u1(double prob)$/;"	f	file:
uMinus	lib/intExp.c	/^static double uMinus()$/;"	f	file:
ucLowerLimit	hg/inc/wiggle.h	/^    unsigned char ucLowerLimit;	\/*	for comparison direct to bytes	*\/$/;"	m	struct:wiggleDataStream
ucUpperLimit	hg/inc/wiggle.h	/^    unsigned char ucUpperLimit;	\/*	for comparison direct to bytes	*\/$/;"	m	struct:wiggleDataStream
ucaseMatch	lib/jointalign.c	/^boolean ucaseMatch( char a, char b )$/;"	f
uchar	lib/jpegSize.c	/^typedef unsigned char uchar;$/;"	t	file:
uchar	lib/mafScore.c	/^typedef unsigned char uchar;$/;"	t	file:
ucscMapped	hg/inc/hgnc.h	/^    char *ucscMapped;	\/* UCSC ID (mapped data) *\/$/;"	m	struct:hgnc
ucscRetroInfo	hg/inc/ucscRetroInfo.h	/^struct ucscRetroInfo$/;"	s
ucscRetroInfoCommaIn	hg/lib/ucscRetroInfo.c	/^struct ucscRetroInfo *ucscRetroInfoCommaIn(char **pS, struct ucscRetroInfo *ret)$/;"	f
ucscRetroInfoCommaOut	hg/inc/ucscRetroInfo.h	129;"	d
ucscRetroInfoFree	hg/lib/ucscRetroInfo.c	/^void ucscRetroInfoFree(struct ucscRetroInfo **pEl)$/;"	f
ucscRetroInfoFreeList	hg/lib/ucscRetroInfo.c	/^void ucscRetroInfoFreeList(struct ucscRetroInfo **pList)$/;"	f
ucscRetroInfoLoad	hg/lib/ucscRetroInfo.c	/^struct ucscRetroInfo *ucscRetroInfoLoad(char **row)$/;"	f
ucscRetroInfoLoadAll	hg/lib/ucscRetroInfo.c	/^struct ucscRetroInfo *ucscRetroInfoLoadAll(char *fileName) $/;"	f
ucscRetroInfoLoadAllByChar	hg/lib/ucscRetroInfo.c	/^struct ucscRetroInfo *ucscRetroInfoLoadAllByChar(char *fileName, char chopper) $/;"	f
ucscRetroInfoLoadAllByTab	hg/inc/ucscRetroInfo.h	107;"	d
ucscRetroInfoLoadByQuery	hg/lib/ucscRetroInfo.c	/^struct ucscRetroInfo *ucscRetroInfoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
ucscRetroInfoOutput	hg/lib/ucscRetroInfo.c	/^void ucscRetroInfoOutput(struct ucscRetroInfo *el, FILE *f, char sep, char lastSep) $/;"	f
ucscRetroInfoQuery	hg/lib/ucscRetroInfo.c	/^struct ucscRetroInfo *ucscRetroInfoQuery(struct sqlConnection *conn,$/;"	f
ucscRetroInfoSaveToDb	hg/lib/ucscRetroInfo.c	/^void ucscRetroInfoSaveToDb(struct sqlConnection *conn, struct ucscRetroInfo *el, char *tableName, int updateSize)$/;"	f
ucscRetroInfoSaveToDbEscaped	hg/lib/ucscRetroInfo.c	/^void ucscRetroInfoSaveToDbEscaped(struct sqlConnection *conn, struct ucscRetroInfo *el, char *tableName, int updateSize)$/;"	f
ucscRetroInfoTabOut	hg/inc/ucscRetroInfo.h	126;"	d
ucscRetroOrtho	hg/inc/ucscRetroOrtho.h	/^struct ucscRetroOrtho$/;"	s
ucscRetroOrthoCommaIn	hg/lib/ucscRetroOrtho.c	/^struct ucscRetroOrtho *ucscRetroOrthoCommaIn(char **pS, struct ucscRetroOrtho *ret)$/;"	f
ucscRetroOrthoCommaOut	hg/inc/ucscRetroOrtho.h	83;"	d
ucscRetroOrthoFree	hg/lib/ucscRetroOrtho.c	/^void ucscRetroOrthoFree(struct ucscRetroOrtho **pEl)$/;"	f
ucscRetroOrthoFreeList	hg/lib/ucscRetroOrtho.c	/^void ucscRetroOrthoFreeList(struct ucscRetroOrtho **pList)$/;"	f
ucscRetroOrthoLoad	hg/lib/ucscRetroOrtho.c	/^struct ucscRetroOrtho *ucscRetroOrthoLoad(char **row)$/;"	f
ucscRetroOrthoLoadAll	hg/lib/ucscRetroOrtho.c	/^struct ucscRetroOrtho *ucscRetroOrthoLoadAll(char *fileName) $/;"	f
ucscRetroOrthoLoadAllByChar	hg/lib/ucscRetroOrtho.c	/^struct ucscRetroOrtho *ucscRetroOrthoLoadAllByChar(char *fileName, char chopper) $/;"	f
ucscRetroOrthoLoadAllByTab	hg/inc/ucscRetroOrtho.h	61;"	d
ucscRetroOrthoLoadByQuery	hg/lib/ucscRetroOrtho.c	/^struct ucscRetroOrtho *ucscRetroOrthoLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
ucscRetroOrthoOutput	hg/lib/ucscRetroOrtho.c	/^void ucscRetroOrthoOutput(struct ucscRetroOrtho *el, FILE *f, char sep, char lastSep) $/;"	f
ucscRetroOrthoSaveToDb	hg/lib/ucscRetroOrtho.c	/^void ucscRetroOrthoSaveToDb(struct sqlConnection *conn, struct ucscRetroOrtho *el, char *tableName, int updateSize)$/;"	f
ucscRetroOrthoSaveToDbEscaped	hg/lib/ucscRetroOrtho.c	/^void ucscRetroOrthoSaveToDbEscaped(struct sqlConnection *conn, struct ucscRetroOrtho *el, char *tableName, int updateSize)$/;"	f
ucscRetroOrthoStaticLoad	hg/lib/ucscRetroOrtho.c	/^void ucscRetroOrthoStaticLoad(char **row, struct ucscRetroOrtho *ret)$/;"	f
ucscRetroOrthoTabOut	hg/inc/ucscRetroOrtho.h	80;"	d
ucscToEnsembl	hg/lib/ensFace.c	/^static char *ucscToEnsembl(char *database, char *chrom)$/;"	f	file:
udc	inc/bPlusTree.h	/^    struct udcFile *udc;			\/* Open file pointer. *\/$/;"	m	struct:bptFile	typeref:struct:bptFile::udcFile
udc	inc/bbiFile.h	/^    struct udcFile *udc;	\/* Open UDC file handle. *\/$/;"	m	struct:bbiFile	typeref:struct:bbiFile::udcFile
udc	inc/cirTree.h	/^    struct udcFile *udc;			\/* Open file pointer. *\/$/;"	m	struct:cirTreeFile	typeref:struct:cirTreeFile::udcFile
udc	inc/crTree.h	/^    struct udcFile *udc;			\/* Open file handle. *\/$/;"	m	struct:crTreeFile	typeref:struct:crTreeFile::udcFile
udcBitmap	lib/udc.c	/^struct udcBitmap$/;"	s	file:
udcBitmapClose	lib/udc.c	/^static void udcBitmapClose(struct udcBitmap **pBits)$/;"	f	file:
udcBitmapHeaderSize	lib/udc.c	112;"	d	file:
udcBitmapOpen	lib/udc.c	/^static struct udcBitmap *udcBitmapOpen(char *fileName)$/;"	f	file:
udcBitmapSig	inc/sig.h	96;"	d
udcBlockSize	lib/udc.c	36;"	d	file:
udcCacheAge	lib/udc.c	/^unsigned long udcCacheAge(char *url, char *cacheDir)$/;"	f
udcCacheDir	lib/knetUdc.c	/^static char *udcCacheDir = NULL;$/;"	v	file:
udcCachePreload	lib/udc.c	/^static boolean udcCachePreload(struct udcFile *file, bits64 offset, bits64 size)$/;"	f	file:
udcCacheTimeout	lib/udc.c	/^int udcCacheTimeout()$/;"	f
udcCheckCacheBits	lib/udc.c	/^boolean udcCheckCacheBits(struct udcFile *file, int startBlock, int endBlock)$/;"	f
udcCleanup	lib/udc.c	/^bits64 udcCleanup(char *cacheDir, double maxDays, boolean testOnly)$/;"	f
udcDataViaHttpOrFtp	lib/udc.c	/^int udcDataViaHttpOrFtp(char *url, bits64 offset, int size, void *buffer, struct connInfo *ci)$/;"	f
udcDataViaLocal	lib/udc.c	/^static int udcDataViaLocal(char *url, bits64 offset, int size, void *buffer, struct connInfo *ci)$/;"	f	file:
udcDataViaSlow	lib/udc.c	/^static int udcDataViaSlow(char *url, bits64 offset, int size, void *buffer, struct connInfo *ci)$/;"	f	file:
udcDataViaTransparent	lib/udc.c	/^static int udcDataViaTransparent(char *url, bits64 offset, int size, void *buffer,$/;"	f	file:
udcDefaultDir	lib/udc.c	/^char *udcDefaultDir()$/;"	f
udcDevicePrefix	inc/udc.h	107;"	d
udcFetchMissing	lib/udc.c	/^static void udcFetchMissing(struct udcFile *file, struct udcBitmap *bits, bits64 start, bits64 end)$/;"	f	file:
udcFile	lib/udc.c	/^struct udcFile$/;"	s	file:
udcFileCacheFiles	lib/udc.c	/^struct slName *udcFileCacheFiles(char *url, char *cacheDir)$/;"	f
udcFileClose	lib/udc.c	/^void udcFileClose(struct udcFile **pFile)$/;"	f
udcFileMayOpen	lib/udc.c	/^struct udcFile *udcFileMayOpen(char *url, char *cacheDir)$/;"	f
udcFileOpen	lib/udc.c	/^struct udcFile *udcFileOpen(char *url, char *cacheDir)$/;"	f
udcFileReadAll	lib/udc.c	/^char *udcFileReadAll(char *url, char *cacheDir, size_t maxSize, size_t *retSize)$/;"	f
udcGetChar	lib/udc.c	/^int udcGetChar(struct udcFile *file)$/;"	f
udcInfoViaFtp	lib/udc.c	/^boolean udcInfoViaFtp(char *url, struct udcRemoteFileInfo *retInfo)$/;"	f
udcInfoViaHttp	lib/udc.c	/^boolean udcInfoViaHttp(char *url, struct udcRemoteFileInfo *retInfo)$/;"	f
udcInfoViaLocal	lib/udc.c	/^static boolean udcInfoViaLocal(char *url, struct udcRemoteFileInfo *retInfo)$/;"	f	file:
udcInfoViaSlow	lib/udc.c	/^static boolean udcInfoViaSlow(char *url, struct udcRemoteFileInfo *retInfo)$/;"	f	file:
udcInfoViaTransparent	lib/udc.c	/^static boolean udcInfoViaTransparent(char *url, struct udcRemoteFileInfo *retInfo)$/;"	f	file:
udcMaxBytesPerRemoteFetch	lib/udc.c	39;"	d	file:
udcMustRead	lib/udc.c	/^void udcMustRead(struct udcFile *file, void *buf, bits64 size)$/;"	f
udcMustReadOne	inc/udc.h	46;"	d
udcNewCreateBitmapAndSparse	lib/udc.c	/^static void udcNewCreateBitmapAndSparse(struct udcFile *file, $/;"	f	file:
udcParseUrl	lib/udc.c	/^void udcParseUrl(char *url, char **retProtocol, char **retAfterProtocol, char **retColon)$/;"	f
udcParseUrlFull	lib/udc.c	/^void udcParseUrlFull(char *url, char **retProtocol, char **retAfterProtocol, char **retColon,$/;"	f
udcPathAndFileNames	lib/udc.c	/^void udcPathAndFileNames(struct udcFile *file, char *cacheDir, char *protocol, char *afterProtocol)$/;"	f
udcPathToUrl	lib/udc.c	/^char *udcPathToUrl(const char *path, char *buf, size_t size, char *cacheDir)$/;"	f
udcProtocol	lib/udc.c	/^struct udcProtocol$/;"	s	file:
udcProtocolFree	lib/udc.c	/^static void udcProtocolFree(struct udcProtocol **pProt)$/;"	f	file:
udcProtocolNew	lib/udc.c	/^static struct udcProtocol *udcProtocolNew(char *upToColon)$/;"	f	file:
udcRead	lib/udc.c	/^bits64 udcRead(struct udcFile *file, void *buf, bits64 size)$/;"	f
udcReadBits16	lib/udc.c	/^bits16 udcReadBits16(struct udcFile *file, boolean isSwapped)$/;"	f
udcReadBits32	lib/udc.c	/^bits32 udcReadBits32(struct udcFile *file, boolean isSwapped)$/;"	f
udcReadBits64	lib/udc.c	/^bits64 udcReadBits64(struct udcFile *file, boolean isSwapped)$/;"	f
udcReadDouble	lib/udc.c	/^double udcReadDouble(struct udcFile *file, boolean isSwapped)$/;"	f
udcReadFloat	lib/udc.c	/^float udcReadFloat(struct udcFile *file, boolean isSwapped)$/;"	f
udcReadStringAndZero	lib/udc.c	/^char *udcReadStringAndZero(struct udcFile *file)$/;"	f
udcRemoteFileInfo	lib/udc.c	/^struct udcRemoteFileInfo$/;"	s	file:
udcSeek	lib/udc.c	/^void udcSeek(struct udcFile *file, bits64 offset)$/;"	f
udcSetCacheTimeout	lib/udc.c	/^void udcSetCacheTimeout(int timeout)$/;"	f
udcSetDefaultDir	lib/udc.c	/^void udcSetDefaultDir(char *path)$/;"	f
udcSizeAndModTimeFromBitmap	lib/udc.c	/^static long long int udcSizeAndModTimeFromBitmap(char *bitmapFileName, time_t *retTime)$/;"	f	file:
udcSizeFromCache	lib/udc.c	/^long long int udcSizeFromCache(char *url, char *cacheDir)$/;"	f
udcTell	lib/udc.c	/^bits64 udcTell(struct udcFile *file)$/;"	f
udcUpdateTime	lib/udc.c	/^time_t udcUpdateTime(struct udcFile *udc)$/;"	f
udcWrapShortLineFile	lib/udc.c	/^struct lineFile *udcWrapShortLineFile(char *url, char *cacheDir, size_t maxSize)$/;"	f
udcf	lib/knetUdc.c	/^    struct udcFile *udcf;$/;"	m	struct:knetFile_s	typeref:struct:knetFile_s::udcFile	file:
udpEthMaxSize	inc/rudp.h	114;"	d
uglyAbort	inc/common.h	175;"	d
uglyOut	inc/common.h	176;"	d
uglyTime	lib/common.c	/^void uglyTime(char *label, ...)$/;"	f
uglyf	inc/common.h	174;"	d
uglyfBreak	lib/osunix.c	/^void uglyfBreak()$/;"	f
uglyfBreak	lib/oswin9x.c	/^void uglyfBreak()$/;"	f
uiLabel	hg/inc/hgMaf.h	/^    char *uiLabel;              \/* Label to print on trackUi *\/$/;"	m	struct:consWiggle
uid	hg/inc/genomicSuperDups.h	/^    unsigned uid;	\/* unique id *\/$/;"	m	struct:genomicSuperDups
uint32	inc/md5.h	5;"	d
uint64	inc/md5.h	6;"	d
uint8	inc/md5.h	4;"	d
uintToString	hg/lib/annoGratorGpVar.c	/^static char *uintToString(uint num)$/;"	f	file:
unN	lib/codebias.c	/^static void unN(DNA *dna, int dnaSize)$/;"	f	file:
unalignedUnpackDna	lib/nt4.c	/^void unalignedUnpackDna(bits32 *tiles, int start, int size, DNA *unpacked)$/;"	f
unbiasedHeterozygosity	hg/inc/polyGenotype.h	/^    float unbiasedHeterozygosity;	\/* frequency of heterozygosity *\/$/;"	m	struct:polyGenotype
uncertainty	lib/dnaMotif.c	/^static double uncertainty(struct dnaMotif *motif, int pos)$/;"	f	file:
unclip	inc/vGfx.h	/^    void (*unclip)(void *v);$/;"	m	struct:vGfx
uncommentC	inc/tokenizer.h	/^    bool uncommentC;	 \/* Take out C (and C++) style comments. *\/$/;"	m	struct:tokenizer
uncommentShell	inc/tokenizer.h	/^    bool uncommentShell; \/* Take out # style comments. *\/$/;"	m	struct:tokenizer
uncompressBufSize	inc/bbiFile.h	/^    bits32 uncompressBufSize;	\/* Size of uncompression buffer, 0 if uncompressed *\/$/;"	m	struct:bbiFile
underline	inc/seqOut.h	/^    bool underline;	\/* Underline? *\/$/;"	m	struct:cfm
undosPath	lib/filePath.c	/^void undosPath(char *path)$/;"	f
undrline	lib/gemfont.h	/^WORD	undrline;$/;"	m	struct:font_hdr
unescapeSlName	lib/gff3.c	/^static struct slName *unescapeSlName(struct gff3Ann *g3a, char *src)$/;"	f	file:
unescapeStr	lib/gff3.c	/^static void unescapeStr(struct gff3Ann *g3a, char *dest, char *src)$/;"	f	file:
unescapeStrPooled	lib/gff3.c	/^static char *unescapeStrPooled(struct gff3Ann *g3a, char *src)$/;"	f	file:
unescapeStrTmp	lib/gff3.c	/^static char *unescapeStrTmp(struct gff3Ann *g3a, char *src)$/;"	f	file:
unhex	lib/trix.c	/^static off_t unhex(char hex[10])$/;"	f	file:
unhexTable	lib/trix.c	/^static char unhexTable[128];	\/* Lookup table to help with hex conversion. *\/$/;"	v	file:
uni	hg/inc/sage.h	/^    int uni;	\/* Number portion of uni-gene identifier, add 'Hs.' for full identifier. *\/$/;"	m	struct:sage
uniProt	hg/inc/cdsPick.h	/^    char *uniProt;	\/* Matching uniProt if available. *\/$/;"	m	struct:cdsPick
uniProtFindPrimAcc	hg/lib/spDb.c	/^char *uniProtFindPrimAcc(char *id)$/;"	f
uniProtFindPrimAccFromGene	hg/lib/spDb.c	/^char *uniProtFindPrimAccFromGene(char *gene, char *db)$/;"	f
uniProtId	hg/inc/ensXRefZfish.h	/^    char *uniProtId;	\/* Unified UniProt protein accession *\/$/;"	m	struct:ensXRefZfish
uniProtMapped	hg/inc/hgnc.h	/^    char *uniProtMapped;	\/* UniProt ID (mapped data) *\/$/;"	m	struct:hgnc
uniStsId	hg/inc/bacCloneXRef.h	/^    char *uniStsId;	\/* UniSTS ID(s) for STS *\/$/;"	m	struct:bacCloneXRef
uniqeInArray	hg/lib/altGraphX.c	/^boolean uniqeInArray(int *array, int size, int val)$/;"	f
unique	hg/inc/joiner.h	/^    boolean unique;		\/* No more than one row per identifier. *\/$/;"	m	struct:joinerField
uniqueAlign	hg/inc/exprBed.h	/^    unsigned uniqueAlign;	\/* 1 if alignment was a global maximum, 0 otherwise *\/$/;"	m	struct:exprBed
unlinkAli	jkOwnLib/fuzzyFind.c	/^void unlinkAli(struct ffAli **pList, struct ffAli *ali)$/;"	f
unorderedSpan	inc/trix.h	/^    int unorderedSpan;          \/* Minimum span in single doc with words in any order. *\/$/;"	m	struct:trixSearchResult
unpackDna	lib/dnautil.c	/^void unpackDna(bits32 *tiles, int tileCount, DNA *out)$/;"	f
unpackDna4	lib/dnautil.c	/^void unpackDna4(UBYTE *tiles, int byteCount, DNA *out)$/;"	f
unpackLeftSide	lib/nt4.c	/^static void unpackLeftSide(bits32 tile, int baseCount, DNA *out)$/;"	f	file:
unpackMidWord	lib/nt4.c	/^static void unpackMidWord(bits32 tile, int startBase, int baseCount, DNA *out)$/;"	f	file:
unpackRightSide	lib/nt4.c	/^static void unpackRightSide(bits32 tile, int baseCount, DNA *out)$/;"	f	file:
unspecifiedVar	hg/lib/joiner.c	/^static void unspecifiedVar(struct lineFile *lf, char *var)$/;"	f	file:
unterminatedQuote	lib/apacheLog.c	/^static void unterminatedQuote(struct apacheAccessLog **pLl, char *line, $/;"	f	file:
untranslateRangeList	jkOwnLib/gfBlatLib.c	/^void untranslateRangeList(struct gfRange *rangeList, int qFrame, int tFrame, $/;"	f
untranslatedSyn	hg/lib/snp125Ui.c	/^static char *untranslatedSyn[] =$/;"	v	file:
unzoomedCir	inc/bbiFile.h	/^    struct cirTreeFile *unzoomedCir;	\/* Unzoomed data index in memory - may be NULL. *\/$/;"	m	struct:bbiFile	typeref:struct:bbiFile::cirTreeFile
unzoomedDataOffset	inc/bbiFile.h	/^    bits64 unzoomedDataOffset;	\/* Start of unzoomed data. *\/$/;"	m	struct:bbiFile
unzoomedIndexOffset	inc/bbiFile.h	/^    bits64 unzoomedIndexOffset;	\/* Start of unzoomed index. *\/$/;"	m	struct:bbiFile
up	jkOwnLib/bandExt.c	/^   int up;$/;"	m	struct:score	file:
upExt	jkOwnLib/bandExt.c	33;"	d	file:
upOneDirFromFile	hg/lib/qaSeq.c	/^void upOneDirFromFile(char *path, char dir[256], char name[128], $/;"	f
upPsl	hg/inc/coordConv.h	/^    struct psl *midPsl,*upPsl,*downPsl; \/** alignments for each of the dnaSeqs *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::
upPsl	hg/lib/coordConv.c	/^    struct psl *midPsl,*upPsl,*downPsl;$/;"	m	struct:possibleCoord	typeref:struct:possibleCoord::	file:
upSeq	hg/inc/coordConv.h	/^    struct dnaSeq *midSeq,*upSeq,*downSeq; \/** 3 in order from 5' to 3' *\/$/;"	m	struct:coordConvRep	typeref:struct:coordConvRep::
upStart	hg/inc/coordConv.h	/^    unsigned midStart,upStart,downStart; \/** starting position of dnaSeqs in old chrom *\/$/;"	m	struct:coordConvRep
updateActiveClusters	hg/lib/ggCluster.c	/^static void updateActiveClusters(struct ggMrnaCluster **pActiveClusters, $/;"	f	file:
updateOne	hg/lib/cart.c	/^static void updateOne(struct sqlConnection *conn,$/;"	f	file:
updatePointsInEdgeWithMedianOfEvidence	hg/lib/ggGraph.c	/^static void updatePointsInEdgeWithMedianOfEvidence(struct geneGraph *gg, $/;"	f	file:
updatePosString	hg/lib/mafGene.c	/^static void updatePosString(struct speciesInfo *si, char *chrom, $/;"	f	file:
updateScoresOnWay	lib/chainBlock.c	/^static void updateScoresOnWay(struct kdBranch *branch, $/;"	f	file:
updateTime	hg/inc/mysqlTableStatus.h	/^    char *updateTime;	\/* Table last update time *\/$/;"	m	struct:mysqlTableStatus
updateTime	hg/inc/tableStatus.h	/^    char *updateTime;	\/* YYYY-MM-DD HH:MM:SS format last update time *\/$/;"	m	struct:tableStatus
updateTime	hg/inc/trackVersion.h	/^    char *updateTime;	\/* YYYY-MM-DD HH:MM:SS most-recent-update time *\/$/;"	m	struct:trackVersion
updateTime	lib/udc.c	/^    bits64 updateTime;	\/* Last update in seconds since 1970 *\/$/;"	m	struct:udcRemoteFileInfo	file:
updateTime	lib/udc.c	/^    time_t updateTime;		\/* Last modified timestamp. *\/$/;"	m	struct:udcFile	file:
updateVariomeLastModifiedDate	hg/lib/variome.c	/^void updateVariomeLastModifiedDate(char *db, int id)$/;"	f
upperLimit	hg/lib/wiggleUtils.c	/^    double upperLimit;	\/* highest data value in this block *\/$/;"	m	struct:wigStatsAcc	file:
upperMatch	jkOwnLib/gfPcrLib.c	/^static void upperMatch(char *dna, char *primer, int size)$/;"	f	file:
upperToN	lib/dnautil.c	/^void upperToN(char *s, int size)$/;"	f
upstreamAllQualifier	hg/lib/featureBits.c	/^static boolean upstreamAllQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
upstreamQualifier	hg/lib/featureBits.c	/^static boolean upstreamQualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
upstream_gene_variant	hg/inc/soterm.h	/^    upstream_gene_variant=1631,$/;"	e	enum:__anon11
url	hg/inc/expRecord.h	/^    char *url;	\/* url relevant to experiment *\/$/;"	m	struct:expRecord
url	hg/inc/trackDb.h	/^    char *url;	\/* URL to link to when they click on an item *\/$/;"	m	struct:trackDb
url	hg/inc/trackHub.h	/^    char *url;		\/* URL of hub.ra file. *\/$/;"	m	struct:trackHub
url	inc/apacheLog.h	/^    char *url;		\/* Requested URL *\/$/;"	m	struct:apacheAccessLog
url	inc/htmlPage.h	/^    char *url;				\/* Url that produced this page. *\/$/;"	m	struct:htmlPage
url	lib/udc.c	/^    char *url;			\/* Name of file - includes protocol *\/$/;"	m	struct:udcFile	file:
urlFromNetParsedUrl	lib/net.c	/^char *urlFromNetParsedUrl(struct netParsedUrl *npu)$/;"	f
urlOkChars	lib/htmlPage.c	/^static char *urlOkChars()$/;"	f	file:
useAlias	hg/inc/hgFind.h	/^    boolean useAlias;             \/* Set if an alias is used *\/$/;"	m	struct:hgPositions
useCount	hg/inc/cartDb.h	/^    int useCount;	\/* Number of times used *\/$/;"	m	struct:cartDb
useDataConstraint	hg/inc/wiggle.h	/^    boolean useDataConstraint;	\/*	to simplify checking if it is on *\/$/;"	m	struct:wiggleDataStream
useIndex	hg/inc/hui.h	/^    boolean useIndex;         \/\/ The returned values should be indexes$/;"	m	struct:_filterBy
useMean	hg/inc/microarray.h	/^    useMean = 1,$/;"	e	enum:maCombineMethod
useMedian	hg/inc/microarray.h	/^    useMedian = 0,$/;"	e	enum:maCombineMethod
useScore	hg/inc/trackDb.h	/^    unsigned char useScore;	\/* 1 if use score, 0 if not *\/$/;"	m	struct:trackDb
useScore	hg/inc/trackTable.h	/^    unsigned char useScore;	\/* 1 if use score, 0 if not *\/$/;"	m	struct:trackTable
useTempFile	lib/cheapcgi.c	/^void useTempFile()$/;"	f
useTransparency	lib/vGif.c	/^    boolean useTransparency;$/;"	m	struct:memGif	file:
useTransparency	lib/vPng.c	/^    boolean useTransparency;   \/* Make background color transparent if TRUE. *\/$/;"	m	struct:memPng	file:
used	inc/spaceSaver.h	/^    bool *used;                 \/* A flag for each spot used. *\/$/;"	m	struct:spaceRowTracker
used	lib/keys.c	/^    int used;             \/* Number of keys used in table. *\/$/;"	m	struct:kvt	file:
user	hg/lib/jksql.c	/^    char *user;					\/* Database user name *\/$/;"	m	struct:sqlConnCache	file:
user	hg/lib/jksql.c	/^    char *user;         \/\/ database server user name$/;"	m	struct:sqlProfile	file:
user	inc/net.h	/^   char user[128];	\/* User name (optional)  *\/$/;"	m	struct:netParsedUrl
userData	inc/xp.h	/^    void *userData;			\/* Pointer to user's data structure. *\/$/;"	m	struct:xp
userHeight	inc/psGfx.h	/^    double userWidth, userHeight; \/* Size of image in virtual pixels. *\/$/;"	m	struct:psGfx
userId	hg/inc/cart.h	/^   unsigned int userId;	\/* User ID in database. *\/$/;"	m	struct:cart
userInfo	hg/inc/cart.h	/^   struct cartDb *userInfo;	\/* Info on user. *\/$/;"	m	struct:cart	typeref:struct:cart::cartDb
userWidth	inc/psGfx.h	/^    double userWidth, userHeight; \/* Size of image in virtual pixels. *\/$/;"	m	struct:psGfx
usual	inc/dtdParse.h	/^    char *usual;		\/* Default value (or NULL if none) *\/$/;"	m	struct:dtdAttribute
usualExpansion	jkOwnLib/gfBlatLib.c	/^static int usualExpansion = 500;$/;"	v	file:
utr3Qualifier	hg/lib/featureBits.c	/^static boolean utr3Qualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
utr5Qualifier	hg/lib/featureBits.c	/^static boolean utr5Qualifier(char *qualifier, char *extra, int *retSize)$/;"	f	file:
utrGap	hg/inc/geneCheck.h	/^    unsigned utrGap;	\/* number of gaps in UTR *\/$/;"	m	struct:geneCheck
utrSplice	hg/inc/geneCheck.h	/^    unsigned utrSplice;	\/* number of CDS introns with unknown splice sites *\/$/;"	m	struct:geneCheck
v	inc/memgfx.h	/^    unsigned short s, v;$/;"	m	struct:hsvColor
v1	hg/inc/altGraphX.h	/^    int v1;                     \/* Vertex 1 in graph. *\/$/;"	m	struct:spliceEdge
v2	hg/inc/altGraphX.h	/^    int v2;                     \/* Vertex 2 in graph. *\/$/;"	m	struct:spliceEdge
vBacs	hg/inc/ggDbRep.h	/^    unsigned *vBacs;	\/* Bac for each vertex *\/$/;"	m	struct:altGraph
vGfx	inc/vGfx.h	/^struct vGfx$/;"	s
vPosition	hg/lib/altGraphX.c	/^    int vPosition;$/;"	m	struct:agVertSortable	file:
vPositions	hg/inc/altGraph.h	/^    int *vPositions;	\/* Position in target for each vertex *\/$/;"	m	struct:altGraph
vPositions	hg/inc/altGraphX.h	/^    int *vPositions;	\/* Position in target for each vertex. *\/$/;"	m	struct:altGraphX
vPositions	hg/inc/ggDbRep.h	/^    unsigned *vPositions;	\/* Position in bac for each vertex *\/$/;"	m	struct:altGraph
vTypes	hg/inc/altGraph.h	/^    unsigned char *vTypes;	\/* Type for each vertex *\/$/;"	m	struct:altGraph
vTypes	hg/inc/altGraphX.h	/^    unsigned char *vTypes;	\/* Type for each vertex. *\/$/;"	m	struct:altGraphX
vTypes	hg/inc/ggDbRep.h	/^    unsigned char *vTypes;	\/* Type for each vertex *\/$/;"	m	struct:altGraph
vaDumpStack	lib/osunix.c	/^void vaDumpStack(char *format, va_list args)$/;"	f
vaErrAbort	lib/errabort.c	/^void vaErrAbort(char *format, va_list args)$/;"	f
vaGff3FileErr	lib/gff3.c	/^static void vaGff3FileErr(struct gff3File *g3f, char *format, va_list args)$/;"	f	file:
vaWarn	lib/errabort.c	/^void vaWarn(char *format, va_list args)$/;"	f
va_copy	inc/common.h	159;"	d
va_copy	inc/common.h	162;"	d
val	hg/inc/chromGraph.h	/^    double val;		\/* Current value. *\/$/;"	m	struct:chromGraphBin
val	hg/inc/chromGraph.h	/^    double val;	\/* Value at coordinate *\/$/;"	m	struct:chromGraph
val	hg/inc/jsHelper.h	/^    union jsonElementVal val;$/;"	m	struct:jsonElement	typeref:union:jsonElement::jsonElementVal
val	hg/inc/mdb.h	/^    char *val;	\/* Metadata value. *\/$/;"	m	struct:mdb
val	hg/inc/mdb.h	/^    char *val;               \/\/ Metadata value.$/;"	m	struct:mdbLimbVal
val	hg/inc/mdb.h	/^    char *val;               \/\/ Metadata value.$/;"	m	struct:mdbVar
val	hg/inc/metaTbl.h	/^    char *val;                \/\/ Metadata value.$/;"	m	struct:metaLimbVal
val	hg/inc/metaTbl.h	/^    char *val;                \/\/ Metadata value.$/;"	m	struct:metaVar
val	hg/inc/metaTbl.h	/^    char *val;              \/\/ Metadata value.$/;"	m	struct:metaTbl
val	hg/lib/liftOver.c	/^     int val;		\/* Some value (optional). *\/$/;"	m	struct:liftRange	file:
val	inc/bbiFile.h	/^    double val;				\/* Value at that position. *\/$/;"	m	struct:bbiInterval
val	inc/binRange.h	/^    void *val;			\/* Actual bin item. *\/$/;"	m	struct:binElement
val	inc/bwgInternal.h	/^    float val;			\/* Value. *\/$/;"	m	struct:bwgBedGraphItem
val	inc/bwgInternal.h	/^    float val;			\/* Value. *\/$/;"	m	struct:bwgFixedStepItem
val	inc/bwgInternal.h	/^    float val;			\/* Value. *\/$/;"	m	struct:bwgFixedStepPacked
val	inc/bwgInternal.h	/^    float val;			\/* Value. *\/$/;"	m	struct:bwgVariableStepItem
val	inc/bwgInternal.h	/^    float val;			\/* Value. *\/$/;"	m	struct:bwgVariableStepPacked
val	inc/cheapcgi.h	/^    char *val;  		\/* Value - also not allocated here. *\/$/;"	m	struct:cgiVar
val	inc/common.h	/^    double val;			\/* Double-precision value. *\/$/;"	m	struct:slDouble
val	inc/common.h	/^    int val;		\/* Integer value. *\/$/;"	m	struct:slInt
val	inc/common.h	/^    void *val;			\/* Pointer to item data. *\/$/;"	m	struct:slPair
val	inc/common.h	/^    void *val;		\/* A reference to something. *\/$/;"	m	struct:slRef
val	inc/diGraph.h	/^    void *val;		\/* Value of edge. *\/$/;"	m	struct:dgEdge
val	inc/diGraph.h	/^    void *val;             \/* Value of node. *\/$/;"	m	struct:dgNode
val	inc/dlist.h	/^    void *val;$/;"	m	struct:dlNode
val	inc/hash.h	/^    void *val;$/;"	m	struct:hashEl
val	inc/htmlPage.h	/^    char *val;		\/* Attribute value. *\/$/;"	m	struct:htmlAttribute
val	inc/intValTree.h	/^    void *val;$/;"	m	struct:intVal
val	inc/keys.h	/^    char *val;$/;"	m	struct:keyVal
val	inc/rangeTree.h	/^    void *val;		\/* Some value associated with range. *\/$/;"	m	struct:range
val	inc/rql.h	/^    union rqlVal val;		\/* Return value of this operation. *\/$/;"	m	struct:rqlParse	typeref:union:rqlParse::rqlVal
val	inc/rql.h	/^    union rqlVal val;$/;"	m	struct:rqlEval	typeref:union:rqlEval::rqlVal
val	inc/seg.h	/^	int val;					\/* Integer value for this segment list. *\/$/;"	m	struct:segBlock
val	inc/spaceSaver.h	/^    void *val;$/;"	m	struct:spaceNode
val	lib/crTree.c	/^    bits32 val;$/;"	m	struct:name32	file:
val	lib/log.c	/^    int val;$/;"	m	struct:nameVal	file:
val	lib/md5.c	/^static char *val[] =$/;"	v	file:
valBuf	inc/bigWig.h	/^     double *valBuf;	\/* A value for each base on chrom. Zero where no data. *\/$/;"	m	struct:bigWigValsOnChrom
valDataSize	hg/inc/genomeRangeTreeFile.h	/^    bits32 valDataSize;$/;"	m	struct:genomeRangeTreeFile
valDataType	hg/inc/genomeRangeTreeFile.h	/^    bits32 valDataType;$/;"	m	struct:genomeRangeTreeFile
valHash	hg/inc/mdb.h	/^    struct hash* valHash;    \/\/ if NOT NULL: hash of vals  (val str to limbVal struct)$/;"	m	struct:mdbByVar	typeref:struct:mdbByVar::hash
valHash	hg/inc/metaTbl.h	/^    struct hash* valHash;     \/\/ if NOT NULL: hash of vals  (val str to limbVal struct)$/;"	m	struct:metaByVar	typeref:struct:metaByVar::hash
valOrDb	hg/lib/hVarSubst.c	/^static char *valOrDb(char *val, char *database)$/;"	f	file:
valSize	inc/bPlusTree.h	/^    bits32 valSize;		\/* Size of values. *\/$/;"	m	struct:bptFile
valToAa	lib/dnautil.c	/^AA valToAa[21];$/;"	v
valToCodon	lib/dnautil.c	/^DNA *valToCodon(int val)$/;"	f
valToNt	lib/dnautil.c	/^DNA valToNt[(N_BASE_VAL|MASKED_BASE_BIT)+1];$/;"	v
valToNtMasked	lib/dnautil.c	/^DNA valToNtMasked[256];$/;"	v
valhash_chainSubset	hg/lib/transMapInfo.c	/^static struct hash *valhash_chainSubset = NULL;$/;"	v	typeref:struct:hash	file:
valhash_cnv	hg/lib/gwasCatalog.c	/^static struct hash *valhash_cnv = NULL;$/;"	v	typeref:struct:hash	file:
valhash_frame	hg/lib/snp125CodingCoordless.c	/^static struct hash *valhash_frame = NULL;$/;"	v	typeref:struct:hash	file:
valhash_mol	hg/lib/refSeqStatus.c	/^static struct hash *valhash_mol = NULL;$/;"	v	typeref:struct:hash	file:
valhash_reason	hg/lib/gbWarn.c	/^static struct hash *valhash_reason = NULL;$/;"	v	typeref:struct:hash	file:
valhash_srcDb	hg/lib/gbSeq.c	/^static struct hash *valhash_srcDb = NULL;$/;"	v	typeref:struct:hash	file:
valhash_status	hg/lib/refSeqStatus.c	/^static struct hash *valhash_status = NULL;$/;"	v	typeref:struct:hash	file:
valhash_structType	hg/lib/lsSnpPdb.c	/^static struct hash *valhash_structType = NULL;$/;"	v	typeref:struct:hash	file:
valhash_type	hg/lib/gbSeq.c	/^static struct hash *valhash_type = NULL;$/;"	v	typeref:struct:hash	file:
valhash_type	hg/lib/txEdgeBed.c	/^static struct hash *valhash_type = NULL;$/;"	v	typeref:struct:hash	file:
valhash_type	hg/lib/txEdgeOrtho.c	/^static struct hash *valhash_type = NULL;$/;"	v	typeref:struct:hash	file:
valid	hg/inc/dbSnpRs.h	/^    char *valid;	\/* the validation status of the SNP *\/$/;"	m	struct:dbSnpRs
valid	hg/inc/snp.h	/^    char *valid;	\/* The validation status of the SNP *\/$/;"	m	struct:snp
valid	hg/inc/snp125.h	/^    char *valid;	\/* The validation status of the SNP *\/$/;"	m	struct:snp125
valid	hg/inc/snp125.h	/^    char *valid;	\/* The validation status of the SNP *\/$/;"	m	struct:snp125Extended
valid	hg/inc/snp132Ext.h	/^    char *valid;	\/* Validation status of the SNP *\/$/;"	m	struct:snp132Ext
validCount	hg/inc/wiggle.h	/^    unsigned validCount;	\/* number of valid data values in this block *\/$/;"	m	struct:wiggle
validCount	inc/bbiFile.h	/^    bits32 validCount;		\/* Count of (bases) with actual data. *\/$/;"	m	struct:bbiSummary
validCount	inc/bbiFile.h	/^    bits32 validCount;		\/* Count of (bases) with actual data. *\/$/;"	m	struct:bbiSummaryOnDisk
validCount	inc/bbiFile.h	/^    bits64 validCount;		\/* Count of (bases) with actual data. *\/$/;"	m	struct:bbiSummaryElement
validData	hg/lib/wigAsciiToBinary.c	/^static unsigned char * validData = (unsigned char *) NULL;$/;"	v	file:
validPoints	hg/inc/wiggle.h	/^    unsigned long long validPoints;  \/*	reading stats, number of data bytes *\/$/;"	m	struct:wiggleDataStream
validateBody	lib/htmlPage.c	/^static struct htmlTag *validateBody(struct htmlPage *page, struct htmlTag *startTag)$/;"	f	file:
validateCgiUrl	lib/htmlPage.c	/^static void validateCgiUrl(char *url)$/;"	f	file:
validateCgiUrls	lib/htmlPage.c	/^static void validateCgiUrls(struct htmlPage *page)$/;"	f	file:
validateGisaidUser	hg/lib/validateGisaid.c	/^boolean validateGisaidUser()$/;"	f
validateNestingTags	lib/htmlPage.c	/^static void validateNestingTags(struct htmlPage *page,$/;"	f	file:
validateOneTrack	hg/lib/trackHub.c	/^static void validateOneTrack( struct trackHub *hub, $/;"	f	file:
validateOption	lib/options.c	/^static void validateOption(char *name, char *val, struct optionSpec *optionSpecs)$/;"	f	file:
validateSeqs	lib/jointalign.c	/^void validateSeqs( char *seq1, char *seq2 )$/;"	f
validateTables	lib/htmlPage.c	/^static void validateTables(struct htmlPage *page, $/;"	f	file:
validateTracks	hg/lib/trackHub.c	/^static void validateTracks( struct trackHub *hub, struct trackHubGenome *genome,$/;"	f	file:
vals	hg/inc/mdb.h	/^    struct mdbLimbVal* vals; \/\/ list of values associated with this var$/;"	m	struct:mdbByVar	typeref:struct:mdbByVar::mdbLimbVal
vals	hg/inc/metaTbl.h	/^    struct metaLimbVal* vals; \/\/ list of values associated with this var$/;"	m	struct:metaByVar	typeref:struct:metaByVar::metaLimbVal
vals	inc/gff3.h	/^   struct slName *vals;       \/* values for the attribute *\/$/;"	m	struct:gff3Attr	typeref:struct:gff3Attr::slName
value	hg/inc/cnpSharpCutoff.h	/^    float value;	\/* Data value *\/$/;"	m	struct:cnpSharpCutoff
value	hg/inc/cnpSharpSample.h	/^    float value;	\/* Data value *\/$/;"	m	struct:cnpSharpSample
value	hg/inc/hui.h	/^    char *value;                \/\/ value to sort on$/;"	m	struct:_sortColumn
value	hg/inc/wiggle.h	/^    double value;$/;"	m	struct:wiggleDatum
value	hg/inc/wiggle.h	/^    float value;$/;"	m	struct:asciiDatum
value	inc/annoFormatter.h	/^    void *value;$/;"	m	struct:annoFormatterOption
value	inc/cheapcgi.h	/^    int value;$/;"	m	struct:cgiChoice
value	inc/htmlPage.h	/^    char *value;		\/* Cookie value. *\/$/;"	m	struct:htmlCookie
valueAndLabel	hg/inc/hui.h	/^    boolean valueAndLabel;    \/\/ If values list is value|label, then label is shown to the user$/;"	m	struct:_filterBy
values	inc/annoFilter.h	/^    void *values;		\/\/ Depending on op: name(s) to match, thresholds to compare, etc.$/;"	m	struct:annoFilter
values	inc/asParse.h	/^    struct slName *values;         \/* values for symbolic types *\/$/;"	m	struct:asColumn	typeref:struct:asColumn::slName
values	inc/htmlPage.h	/^    struct slName *values;	\/* List of available values.  Null if textBox. *\/$/;"	m	struct:htmlFormVar	typeref:struct:htmlFormVar::slName
values	inc/vcf.h	/^    union vcfDatum *values;	\/\/ Array of data values following id$/;"	m	struct:vcfInfoElement	typeref:union:vcfInfoElement::vcfDatum
valuesMatched	hg/inc/wiggle.h	/^    unsigned long long valuesMatched;  \/* reading stats, number of data bytes *\/$/;"	m	struct:wiggleDataStream
values_chainSubset	hg/lib/transMapInfo.c	/^static char *values_chainSubset[] = {"unknown", "all", "syn", "rbest", NULL};$/;"	v	file:
values_cnv	hg/lib/gwasCatalog.c	/^static char *values_cnv[] = {"Y", "N", NULL};$/;"	v	file:
values_frame	hg/lib/snp125CodingCoordless.c	/^static char *values_frame[] = {"1", "2", "3", NULL};$/;"	v	file:
values_mol	hg/lib/refSeqStatus.c	/^static char *values_mol[] = {"DNA", "RNA", "ds-RNA", "ds-mRNA", "ds-rRNA", "mRNA", "ms-DNA", "ms-RNA", "rRNA", "scRNA", "snRNA", "snoRNA", "ss-DNA", "ss-RNA", "ss-snoRNA", "tRNA", NULL};$/;"	v	file:
values_reason	hg/lib/gbWarn.c	/^static char *values_reason[] = {"invitroNorm", "athRage", "orestes", NULL};$/;"	v	file:
values_srcDb	hg/lib/gbSeq.c	/^static char *values_srcDb[] = {"GenBank", "RefSeq", "Other", NULL};$/;"	v	file:
values_status	hg/lib/refSeqStatus.c	/^static char *values_status[] = {"Unknown", "Reviewed", "Validated", "Provisional", "Predicted", "Inferred", NULL};$/;"	v	file:
values_structType	hg/lib/lsSnpPdb.c	/^static char *values_structType[] = {"XRay", "NMR", NULL};$/;"	v	file:
values_type	hg/lib/gbSeq.c	/^static char *values_type[] = {"EST", "mRNA", "PEP", NULL};$/;"	v	file:
values_type	hg/lib/txEdgeBed.c	/^static char *values_type[] = {"exon", "intron", NULL};$/;"	v	file:
values_type	hg/lib/txEdgeOrtho.c	/^static char *values_type[] = {"exon", "intron", NULL};$/;"	v	file:
var	hg/inc/mdb.h	/^    char *var;	\/* Metadata variable name. *\/$/;"	m	struct:mdb
var	hg/inc/mdb.h	/^    char *var;               \/\/ Metadata variable name.$/;"	m	struct:mdbByVar
var	hg/inc/mdb.h	/^    char *var;               \/\/ Metadata variable name.$/;"	m	struct:mdbVar
var	hg/inc/metaTbl.h	/^    char *var;                \/\/ Metadata variable name.$/;"	m	struct:metaByVar
var	hg/inc/metaTbl.h	/^    char *var;                \/\/ Metadata variable name.$/;"	m	struct:metaVar
var	hg/inc/metaTbl.h	/^    char *var;              \/\/ Metadata variable name.$/;"	m	struct:metaTbl
varHash	hg/inc/mdb.h	/^    struct hash* varHash;    \/\/ if NOT NULL: variables are also hashed! (var str to mdbVar struct)$/;"	m	struct:mdbObj	typeref:struct:mdbObj::hash
varHash	hg/inc/metaTbl.h	/^    struct hash* varHash;     \/\/ if NOT NULL: variables are also hashed! (var str to metaVar struct)$/;"	m	struct:metaObj	typeref:struct:metaObj::hash
varId	hg/inc/dv.h	/^    char *varId;	\/* Variant identifier *\/$/;"	m	struct:dv
varId	hg/inc/dvXref2.h	/^    char *varId;	\/* SWISS-PROT variant *\/$/;"	m	struct:dvXref2
varStatus	hg/inc/dv.h	/^    char *varStatus;	\/* Variant status (always unknown) *\/$/;"	m	struct:dv
varStepSectionToIntervals	lib/metaWig.c	/^static void varStepSectionToIntervals(struct bwgSection *section, struct lm *lm,$/;"	f	file:
varType	hg/inc/dgv.h	/^    char *varType;	\/* Type of variation *\/$/;"	m	struct:dgv
varType	hg/inc/metaTbl.h	/^    char *varType;          \/\/ txt | binary$/;"	m	struct:metaTbl
varType	hg/inc/metaTbl.h	/^    enum metaVarType varType; \/\/ txt | binary$/;"	m	struct:metaByVar	typeref:enum:metaByVar::metaVarType
varType	hg/inc/metaTbl.h	/^    enum metaVarType varType; \/\/ txt | binary$/;"	m	struct:metaVar	typeref:enum:metaVar::metaVarType
variableStepPacked	inc/bwgInternal.h	/^    struct bwgVariableStepPacked *variableStepPacked;	\/* An array *\/$/;"	m	union:bwgItem	typeref:struct:bwgItem::bwgVariableStepPacked
variance	hg/inc/wiggle.h	/^    double variance;	\/* variance of data points *\/$/;"	m	struct:wiggleStats
variant	hg/inc/dv.h	/^    char *variant;	\/* Variant *\/$/;"	m	struct:dv
variant	hg/inc/variant.h	/^    struct variant *variant;$/;"	m	struct:allele	typeref:struct:allele::variant
variant	hg/inc/variant.h	/^struct variant   \/\/ a single variant$/;"	s
variantFromPgSnp	hg/lib/variant.c	/^struct variant *variantFromPgSnp(struct pgSnp *pgSnp)$/;"	f
variationType	hg/inc/cnpIafrate.h	/^    char *variationType;	\/* {Gain},{Loss},{Gain and Loss} *\/$/;"	m	struct:cnpIafrate
variationType	hg/inc/cnpLocke.h	/^    char *variationType;	\/* {Gain},{Loss},{Gain and Loss} *\/$/;"	m	struct:cnpLocke
variationType	hg/inc/cnpSharp.h	/^    char *variationType;	\/* Gain, Loss, Gain and Loss *\/$/;"	m	struct:cnpSharp
variationType	hg/inc/cnpSharp2.h	/^    char *variationType;	\/* Gain, Loss, Gain and Loss *\/$/;"	m	struct:cnpSharp2
variome	hg/inc/variome.h	/^struct variome$/;"	s
variomeClassCnt	hg/lib/variome.c	/^int variomeClassCnt = ArraySize(variomeClassList);$/;"	v
variomeClassList	hg/lib/variome.c	/^char *variomeClassList[] = {$/;"	v
variomeCommaIn	hg/lib/variome.c	/^struct variome *variomeCommaIn(char **pS, struct variome *ret)$/;"	f
variomeCommaOut	hg/inc/variome.h	99;"	d
variomeCoorList	hg/lib/variome.c	/^char *variomeCoorList[] = {$/;"	v
variomeFree	hg/lib/variome.c	/^void variomeFree(struct variome **pEl)$/;"	f
variomeFreeList	hg/lib/variome.c	/^void variomeFreeList(struct variome **pList)$/;"	f
variomeLoad	hg/lib/variome.c	/^struct variome *variomeLoad(char **row)$/;"	f
variomeLoadAll	hg/lib/variome.c	/^struct variome *variomeLoadAll(char *fileName) $/;"	f
variomeLoadAllByChar	hg/lib/variome.c	/^struct variome *variomeLoadAllByChar(char *fileName, char chopper) $/;"	f
variomeLoadAllByTab	hg/inc/variome.h	52;"	d
variomeLoadByQuery	hg/lib/variome.c	/^struct variome *variomeLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
variomeOutput	hg/lib/variome.c	/^void variomeOutput(struct variome *el, FILE *f, char sep, char lastSep) $/;"	f
variomeSaveToDb	hg/lib/variome.c	/^void variomeSaveToDb(struct sqlConnection *conn, struct variome *el, char *tableName, int updateSize)$/;"	f
variomeSaveToDbEscaped	hg/lib/variome.c	/^void variomeSaveToDbEscaped(struct sqlConnection *conn, struct variome *el, char *tableName, int updateSize)$/;"	f
variomeStaticLoad	hg/lib/variome.c	/^void variomeStaticLoad(char **row, struct variome *ret)$/;"	f
variomeTabOut	hg/inc/variome.h	96;"	d
vars	hg/inc/mdb.h	/^    struct mdbVar* vars;     \/\/ if NOT NULL: list of variables belonging to this object$/;"	m	struct:mdbObj	typeref:struct:mdbObj::mdbVar
vars	hg/inc/metaTbl.h	/^    struct metaVar* vars;     \/\/ if NOT NULL: list of variables belonging to this object$/;"	m	struct:metaObj	typeref:struct:metaObj::metaVar
vars	inc/htmlPage.h	/^    struct htmlFormVar *vars; \/* List of form variables. *\/$/;"	m	struct:htmlForm	typeref:struct:htmlForm::htmlFormVar
vasafef	lib/common.c	/^int vasafef(char* buffer, int bufSize, char *format, va_list args)$/;"	f
vatruncatef	hg/lib/hgFind.c	/^int vatruncatef(char *buf, int size, char *format, va_list args)$/;"	f
vcfAsObj	lib/vcf.c	/^struct asObject *vcfAsObj()$/;"	f
vcfCfgFilterColumn	hg/lib/vcfUi.c	/^static void vcfCfgFilterColumn(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,$/;"	f	file:
vcfCfgHapCluster	hg/lib/vcfUi.c	/^static void vcfCfgHapCluster(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,$/;"	f	file:
vcfCfgHapClusterColor	hg/lib/vcfUi.c	/^static void vcfCfgHapClusterColor(struct cart *cart, struct trackDb *tdb, char *name,$/;"	f	file:
vcfCfgHapClusterEnable	hg/lib/vcfUi.c	/^static void vcfCfgHapClusterEnable(struct cart *cart, struct trackDb *tdb, char *name,$/;"	f	file:
vcfCfgHapClusterHeight	hg/lib/vcfUi.c	/^static void vcfCfgHapClusterHeight(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,$/;"	f	file:
vcfCfgHapClusterTreeAngle	hg/lib/vcfUi.c	/^static void vcfCfgHapClusterTreeAngle(struct cart *cart, struct trackDb *tdb, char *name,$/;"	f	file:
vcfCfgHaplotypeCenter	hg/lib/vcfUi.c	/^void vcfCfgHaplotypeCenter(struct cart *cart, struct trackDb *tdb, char *track,$/;"	f
vcfCfgHaplotypeCenterHiddens	hg/lib/vcfUi.c	/^static void vcfCfgHaplotypeCenterHiddens(char *track, char *ctrName, char *ctrChrom, int ctrPos)$/;"	f	file:
vcfCfgMinAlleleFreq	hg/lib/vcfUi.c	/^static void vcfCfgMinAlleleFreq(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,$/;"	f	file:
vcfCfgMinQual	hg/lib/vcfUi.c	/^static void vcfCfgMinQual(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,$/;"	f	file:
vcfCfgUi	hg/lib/vcfUi.c	/^void vcfCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed)$/;"	f
vcfDataLineAutoSqlString	lib/vcf.c	/^static char *vcfDataLineAutoSqlString =$/;"	v	file:
vcfDatum	inc/vcf.h	/^union vcfDatum$/;"	u
vcfFile	inc/vcf.h	/^struct vcfFile$/;"	s
vcfFileAlloc	lib/vcf.c	/^static void *vcfFileAlloc(struct vcfFile *vcff, size_t size)$/;"	f	file:
vcfFileCloneStr	lib/vcf.c	/^static char *vcfFileCloneStr(struct vcfFile *vcff, char *str)$/;"	f	file:
vcfFileCloneStrZ	lib/vcf.c	/^static char *vcfFileCloneStrZ(struct vcfFile *vcff, char *str, size_t size)$/;"	f	file:
vcfFileCloneSubstr	lib/vcf.c	/^static char *vcfFileCloneSubstr(struct vcfFile *vcff, char *line, regmatch_t substr)$/;"	f	file:
vcfFileCloneVar	lib/vcf.c	209;"	d	file:
vcfFileErr	lib/vcf.c	/^static void vcfFileErr(struct vcfFile *vcff, char *format, ...)$/;"	f	file:
vcfFileFindVariant	lib/vcf.c	/^const struct vcfRecord *vcfFileFindVariant(struct vcfFile *vcff, char *variantId)$/;"	f
vcfFileFree	lib/vcf.c	/^void vcfFileFree(struct vcfFile **pVcff)$/;"	f
vcfFileHeaderFromLineFile	lib/vcf.c	/^static struct vcfFile *vcfFileHeaderFromLineFile(struct lineFile *lf, int maxErr)$/;"	f	file:
vcfFileMayOpen	lib/vcf.c	/^struct vcfFile *vcfFileMayOpen(char *fileOrUrl, int maxErr, int maxRecords, boolean parseAll)$/;"	f
vcfFileNew	lib/vcf.c	/^static struct vcfFile *vcfFileNew()$/;"	f	file:
vcfFilePooledStr	lib/vcf.c	/^static char *vcfFilePooledStr(struct vcfFile *vcff, char *str)$/;"	f	file:
vcfFileStopDueToErrors	lib/vcf.c	/^static bool vcfFileStopDueToErrors(struct vcfFile *vcff)$/;"	f	file:
vcfGenotype	inc/vcf.h	/^struct vcfGenotype$/;"	s
vcfGtConditionalQual	lib/vcf.c	/^const char *vcfGtConditionalQual = "GQ";\/\/ Conditional genotype quality$/;"	v
vcfGtDepth	lib/vcf.c	/^const char *vcfGtDepth = "DP";		\/\/ Read depth at this position for this sample$/;"	v
vcfGtExpectedAltAlleleCount	lib/vcf.c	/^const char *vcfGtExpectedAltAlleleCount = "EC";	\/\/ Typically used in association analyses$/;"	v
vcfGtFilter	lib/vcf.c	/^const char *vcfGtFilter = "FT";		\/\/ Analogous to variant's FILTER field$/;"	v
vcfGtGenotype	lib/vcf.c	/^const char *vcfGtGenotype = "GT";	\/\/ Integer allele indices separated by "\/" (unphased)$/;"	v
vcfGtHaplotypeQualities	lib/vcf.c	/^const char *vcfGtHaplotypeQualities = "HQ";	\/\/ two phred qualities comma separated$/;"	v
vcfGtLikelihoods	lib/vcf.c	/^const char *vcfGtLikelihoods = "GL";	\/\/ Three floating point log10-scaled likelihoods for$/;"	v
vcfGtPhaseSet	lib/vcf.c	/^const char *vcfGtPhaseSet = "PS";	\/\/ Set of phased genotypes to which this genotype belongs$/;"	v
vcfGtPhasingQuality	lib/vcf.c	/^const char *vcfGtPhasingQuality = "PQ";	\/\/ Phred-scaled P(alleles ordered wrongly in heterozygote)$/;"	v
vcfGtPhred	lib/vcf.c	/^const char *vcfGtPhred = "PL";		\/\/ Phred-scaled genotype likelihoods rounded to closest int$/;"	v
vcfHopefullyOpenHeader	hg/lib/vcfUi.c	/^static struct vcfFile *vcfHopefullyOpenHeader(struct cart *cart, struct trackDb *tdb)$/;"	f	file:
vcfInfoAlleleFrequency	lib/vcf.c	/^const char *vcfInfoAlleleFrequency = "AF";	\/\/ allele frequency for each ALT allele in the same$/;"	v
vcfInfoAncestralAllele	lib/vcf.c	/^const char *vcfInfoAncestralAllele = "AA";$/;"	v
vcfInfoBaseQuality	lib/vcf.c	/^const char *vcfInfoBaseQuality = "BQ";		\/\/ RMS base quality at this position$/;"	v
vcfInfoCharacter	inc/vcf.h	/^    vcfInfoCharacter,$/;"	e	enum:vcfInfoType
vcfInfoCigar	lib/vcf.c	/^const char *vcfInfoCigar = "CIGAR";		\/\/ cigar string describing how to align an$/;"	v
vcfInfoDef	inc/vcf.h	/^struct vcfInfoDef$/;"	s
vcfInfoDefForGtKey	lib/vcf.c	/^struct vcfInfoDef *vcfInfoDefForGtKey(struct vcfFile *vcff, const char *key)$/;"	f
vcfInfoDefForKey	lib/vcf.c	/^struct vcfInfoDef *vcfInfoDefForKey(struct vcfFile *vcff, const char *key)$/;"	f
vcfInfoDepth	lib/vcf.c	/^const char *vcfInfoDepth = "DP";		\/\/ combined depth across samples, e.g. DP=154$/;"	v
vcfInfoElement	inc/vcf.h	/^struct vcfInfoElement$/;"	s
vcfInfoEnd	lib/vcf.c	/^const char *vcfInfoEnd = "END";			\/\/ end position of the variant described in this$/;"	v
vcfInfoFlag	inc/vcf.h	/^    vcfInfoFlag,$/;"	e	enum:vcfInfoType
vcfInfoFloat	inc/vcf.h	/^    vcfInfoFloat,$/;"	e	enum:vcfInfoType
vcfInfoInteger	inc/vcf.h	/^    vcfInfoInteger,$/;"	e	enum:vcfInfoType
vcfInfoIs1000Genomes	lib/vcf.c	/^const char *vcfInfoIs1000Genomes = "1000G";	\/\/ membership in 1000 Genomes$/;"	v
vcfInfoIsDbSnp	lib/vcf.c	/^const char *vcfInfoIsDbSnp = "DB";		\/\/ dbSNP membership$/;"	v
vcfInfoIsHapMap2	lib/vcf.c	/^const char *vcfInfoIsHapMap2 = "H2";		\/\/ membership in hapmap2$/;"	v
vcfInfoIsHapMap3	lib/vcf.c	/^const char *vcfInfoIsHapMap3 = "H3";		\/\/ membership in hapmap3$/;"	v
vcfInfoIsSomatic	lib/vcf.c	/^const char *vcfInfoIsSomatic = "SOMATIC";	\/\/ indicates that the record is a somatic mutation,$/;"	v
vcfInfoIsValidated	lib/vcf.c	/^const char *vcfInfoIsValidated = "VALIDATED";	\/\/ validated by follow-up experiment$/;"	v
vcfInfoMapQual0Count	lib/vcf.c	/^const char *vcfInfoMapQual0Count = "MQ0";	\/\/ number of MAPQ == 0 reads covering this record$/;"	v
vcfInfoMappingQuality	lib/vcf.c	/^const char *vcfInfoMappingQuality = "MQ";	\/\/ RMS mapping quality, e.g. MQ=52$/;"	v
vcfInfoNoType	inc/vcf.h	/^    vcfInfoNoType,	\/\/ uninitialized value (0) or unrecognized type name$/;"	e	enum:vcfInfoType
vcfInfoNumAlleles	lib/vcf.c	/^const char *vcfInfoNumAlleles = "AN";		\/\/ total number of alleles in called genotypes$/;"	v
vcfInfoNumSamples	lib/vcf.c	/^const char *vcfInfoNumSamples = "NS";		\/\/ Number of samples with data$/;"	v
vcfInfoPerAlleleGtCount	lib/vcf.c	/^const char *vcfInfoPerAlleleGtCount = "AC";	\/\/ allele count in genotypes, for each ALT allele,$/;"	v
vcfInfoStrandBias	lib/vcf.c	/^const char *vcfInfoStrandBias = "SB";		\/\/ strand bias at this position$/;"	v
vcfInfoString	inc/vcf.h	/^    vcfInfoString,$/;"	e	enum:vcfInfoType
vcfInfoType	inc/vcf.h	/^enum vcfInfoType$/;"	g
vcfInfoTypeFromSubstr	lib/vcf.c	/^static enum vcfInfoType vcfInfoTypeFromSubstr(struct vcfFile *vcff, char *line, regmatch_t substr)$/;"	f	file:
vcfNextRecord	lib/vcf.c	/^struct vcfRecord *vcfNextRecord(struct vcfFile *vcff)$/;"	f
vcfParseData	lib/vcf.c	/^static void vcfParseData(struct vcfFile *vcff, int maxRecords)$/;"	f	file:
vcfParseGenotypes	lib/vcf.c	/^void vcfParseGenotypes(struct vcfRecord *record)$/;"	f
vcfPrintDatum	inc/vcf.h	/^INLINE void vcfPrintDatum(FILE *f, const union vcfDatum datum, const enum vcfInfoType type)$/;"	f
vcfRecord	inc/vcf.h	/^struct vcfRecord$/;"	s
vcfRecordFindGenotype	lib/vcf.c	/^const struct vcfGenotype *vcfRecordFindGenotype(struct vcfRecord *record, char *sampleId)$/;"	f
vcfRecordFindInfo	lib/vcf.c	/^const struct vcfInfoElement *vcfRecordFindInfo(const struct vcfRecord *record, char *key)$/;"	f
vcfRecordFromRow	lib/vcf.c	/^struct vcfRecord *vcfRecordFromRow(struct vcfFile *vcff, char **words)$/;"	f
vcfSpecGtFormatDefs	lib/vcf.c	/^static struct vcfInfoDef *vcfSpecGtFormatDefs = NULL;$/;"	v	typeref:struct:vcfInfoDef	file:
vcfSpecInfoDefs	lib/vcf.c	/^static struct vcfInfoDef *vcfSpecInfoDefs = NULL;$/;"	v	typeref:struct:vcfInfoDef	file:
vcfTabixFactory	hg/lib/customFactory.c	/^static struct customFactory vcfTabixFactory =$/;"	v	typeref:struct:customFactory	file:
vcfTabixFileMayOpen	lib/vcf.c	/^struct vcfFile *vcfTabixFileMayOpen(char *fileOrUrl, char *chrom, int start, int end,$/;"	f
vcfTabixLoader	hg/lib/customFactory.c	/^static struct customTrack *vcfTabixLoader(struct customFactory *fac, struct hash *chromHash,$/;"	f	file:
vcfTabixRecognizer	hg/lib/customFactory.c	/^static boolean vcfTabixRecognizer(struct customFactory *fac, struct customPp *cpp, char *type,$/;"	f	file:
vcf_h	inc/vcf.h	8;"	d
vcff	lib/annoStreamVcf.c	/^    struct vcfFile *vcff;		\/\/ VCF parsed header and file object$/;"	m	struct:annoStreamVcf	typeref:struct:annoStreamVcf::vcfFile	file:
vegaId	hg/inc/hgnc.h	/^    char *vegaId;	\/* Vega ID *\/$/;"	m	struct:hgnc
vegaInfo	hg/inc/vegaInfo.h	/^struct vegaInfo$/;"	s
vegaInfoCommaIn	hg/lib/vegaInfo.c	/^struct vegaInfo *vegaInfoCommaIn(char **pS, struct vegaInfo *ret)$/;"	f
vegaInfoCommaOut	hg/inc/vegaInfo.h	49;"	d
vegaInfoFree	hg/lib/vegaInfo.c	/^void vegaInfoFree(struct vegaInfo **pEl)$/;"	f
vegaInfoFreeList	hg/lib/vegaInfo.c	/^void vegaInfoFreeList(struct vegaInfo **pList)$/;"	f
vegaInfoLoad	hg/lib/vegaInfo.c	/^struct vegaInfo *vegaInfoLoad(char **row)$/;"	f
vegaInfoLoadAll	hg/lib/vegaInfo.c	/^struct vegaInfo *vegaInfoLoadAll(char *fileName) $/;"	f
vegaInfoOutput	hg/lib/vegaInfo.c	/^void vegaInfoOutput(struct vegaInfo *el, FILE *f, char sep, char lastSep) $/;"	f
vegaInfoStaticLoad	hg/lib/vegaInfo.c	/^void vegaInfoStaticLoad(char **row, struct vegaInfo *ret)$/;"	f
vegaInfoTabOut	hg/inc/vegaInfo.h	46;"	d
vegaInfoZfish	hg/inc/vegaInfoZfish.h	/^struct vegaInfoZfish$/;"	s
vegaInfoZfishCommaIn	hg/lib/vegaInfoZfish.c	/^struct vegaInfoZfish *vegaInfoZfishCommaIn(char **pS, struct vegaInfoZfish *ret)$/;"	f
vegaInfoZfishCommaOut	hg/inc/vegaInfoZfish.h	62;"	d
vegaInfoZfishFree	hg/lib/vegaInfoZfish.c	/^void vegaInfoZfishFree(struct vegaInfoZfish **pEl)$/;"	f
vegaInfoZfishFreeList	hg/lib/vegaInfoZfish.c	/^void vegaInfoZfishFreeList(struct vegaInfoZfish **pList)$/;"	f
vegaInfoZfishLoad	hg/lib/vegaInfoZfish.c	/^struct vegaInfoZfish *vegaInfoZfishLoad(char **row)$/;"	f
vegaInfoZfishLoadAll	hg/lib/vegaInfoZfish.c	/^struct vegaInfoZfish *vegaInfoZfishLoadAll(char *fileName) $/;"	f
vegaInfoZfishLoadAllByChar	hg/lib/vegaInfoZfish.c	/^struct vegaInfoZfish *vegaInfoZfishLoadAllByChar(char *fileName, char chopper) $/;"	f
vegaInfoZfishLoadAllByTab	hg/inc/vegaInfoZfish.h	40;"	d
vegaInfoZfishOutput	hg/lib/vegaInfoZfish.c	/^void vegaInfoZfishOutput(struct vegaInfoZfish *el, FILE *f, char sep, char lastSep) $/;"	f
vegaInfoZfishStaticLoad	hg/lib/vegaInfoZfish.c	/^void vegaInfoZfishStaticLoad(char **row, struct vegaInfoZfish *ret)$/;"	f
vegaInfoZfishTabOut	hg/inc/vegaInfoZfish.h	59;"	d
verbose	lib/verbose.c	/^void verbose(int verbosity, char *format, ...)$/;"	f
verboseDot	lib/verbose.c	/^void verboseDot()$/;"	f
verboseDotsEnabled	lib/verbose.c	/^boolean verboseDotsEnabled()$/;"	f
verboseLevel	lib/verbose.c	/^int verboseLevel(void)$/;"	f
verboseLogFile	lib/verbose.c	/^FILE *verboseLogFile()$/;"	f
verboseSetLevel	lib/verbose.c	/^void verboseSetLevel(int verbosity)$/;"	f
verboseSetLogFile	lib/verbose.c	/^void verboseSetLogFile(char *name)$/;"	f
verboseTime	lib/verbose.c	/^void verboseTime(int verbosity, char *label, ...)$/;"	f
verboseTimeInit	lib/verbose.c	/^void verboseTimeInit(void)$/;"	f
verboseVa	lib/verbose.c	/^void verboseVa(int verbosity, char *format, va_list args)$/;"	f
verdict	hg/inc/genomicSuperDups.h	/^    char *verdict;	\/* Real or Allele *\/$/;"	m	struct:genomicSuperDups
verifyWibExists	hg/lib/customTrack.c	/^boolean verifyWibExists(struct sqlConnection *conn, char *table)$/;"	f
version	hg/inc/coordConv.h	/^    char *version;	\/** Version of Assembly, i.e. hg4, hg5 *\/$/;"	m	struct:coordConv
version	hg/inc/gbSeq.h	/^    int version;	\/* Genbank version *\/$/;"	m	struct:gbSeq
version	hg/inc/genomeRangeTreeFile.h	/^    bits32 version;$/;"	m	struct:genomeRangeTreeFile
version	hg/inc/trackVersion.h	/^    char *version;	\/* version string, whatever is meaningful for data source *\/$/;"	m	struct:trackVersion
version	inc/bbiFile.h	/^    bits16 version;		\/* Version number - initially 1. *\/$/;"	m	struct:bbiFile
version	inc/blastParse.h	/^    char *version;                      \/* Version of program. *\/$/;"	m	struct:blastFile
version	inc/htmlPage.h	/^    char *version;		\/* Usually something like HTTP\/1.1 *\/$/;"	m	struct:htmlStatus
version	inc/maf.h	/^    int version;	 \/* Required *\/$/;"	m	struct:mafFile
version	inc/seg.h	/^	int version;				\/* segFile version. *\/$/;"	m	struct:segFile
version	inc/twoBit.h	/^    bits32 version;	\/* Version of .2bit file *\/$/;"	m	struct:twoBitFile
version	lib/udc.c	/^    bits32 version;		\/* Version - increments each time cache is stale. *\/$/;"	m	struct:udcBitmap	file:
vertex1	hg/inc/geneGraph.h	/^    int vertex1;               \/* Index of vertex 1 in vertices array. *\/$/;"	m	struct:ggEdge
vertex2	hg/inc/geneGraph.h	/^    int vertex2;               \/* Index of vertex 2 in vertices array. *\/$/;"	m	struct:ggEdge
vertexCount	hg/inc/altGraph.h	/^    unsigned vertexCount;	\/* Number of vertices in graph *\/$/;"	m	struct:altGraph
vertexCount	hg/inc/altGraphX.h	/^    unsigned vertexCount;	\/* Number of vertices in graph. *\/$/;"	m	struct:altGraphX
vertexCount	hg/inc/geneGraph.h	/^    int vertexCount;                    \/* Vertex count. *\/$/;"	m	struct:geneGraph
vertexCount	hg/inc/geneGraph.h	/^    int vertexCount;             \/* Vertex count. *\/$/;"	m	struct:ggAliInfo
vertexCount	hg/inc/ggDbRep.h	/^    unsigned vertexCount;	\/* Number of vertices in graph *\/$/;"	m	struct:altGraph
vertexCount	hg/inc/txGraph.h	/^    unsigned vertexCount;	\/* Number of vertices in graph. *\/$/;"	m	struct:txGraph
vertexCount	lib/dgRange.c	/^    int vertexCount;	         \/* Number of vertices *\/$/;"	m	struct:bfGraph	file:
vertexIx	hg/lib/ggGraph.c	/^static int vertexIx(struct ggVertex *array, int arraySize, int pos, int type)$/;"	f	file:
vertexUsed	hg/lib/geneGraph.c	/^boolean vertexUsed(struct geneGraph *gg, int vertexIx)$/;"	f
verticalSmear	inc/vGfx.h	/^    void (*verticalSmear)(void *v,$/;"	m	struct:vGfx
vertices	hg/inc/geneGraph.h	/^    struct ggVertex *vertices;          \/* Splice sites or soft start\/ends. *\/$/;"	m	struct:geneGraph	typeref:struct:geneGraph::ggVertex
vertices	hg/inc/geneGraph.h	/^    struct ggVertex *vertices;   \/* Splice sites or soft start\/ends. *\/$/;"	m	struct:ggAliInfo	typeref:struct:ggAliInfo::ggVertex
vertices	hg/inc/txGraph.h	/^    struct txVertex *vertices;	\/* Splice sites and soft ends. *\/$/;"	m	struct:txGraph	typeref:struct:txGraph::txVertex
vertices	lib/dgRange.c	/^    struct bfVertex *vertices;   \/* Array of vertices. *\/$/;"	m	struct:bfGraph	typeref:struct:bfGraph::bfVertex	file:
veryLightRainbowAtPos	lib/rainbow.c	/^struct rgbColor veryLightRainbowAtPos(double pos)$/;"	f
veryLightRainbowTable	lib/rainbow.c	/^static struct rgbColor veryLightRainbowTable[30] = {$/;"	v	typeref:struct:rgbColor	file:
vg	hg/inc/hvGfx.h	/^    struct vGfx *vg;         \/* virtual graphics object *\/$/;"	m	struct:hvGfx	typeref:struct:hvGfx::vGfx
vgBox	inc/vGfx.h	116;"	d
vgClose	lib/vGfx.c	/^void vgClose(struct vGfx **pVg)$/;"	f
vgColorIxToRgb	inc/vGfx.h	136;"	d
vgContrastingColor	lib/vGfx.c	/^Color vgContrastingColor(struct vGfx *vg, int backgroundIx)$/;"	f
vgDot	inc/vGfx.h	108;"	d
vgDrawPoly	inc/vGfx.h	166;"	d
vgFillUnder	inc/vGfx.h	159;"	d
vgFindColorIx	inc/vGfx.h	133;"	d
vgFindRgb	lib/vGfx.c	/^int vgFindRgb(struct vGfx *vg, struct rgbColor *rgb)$/;"	f
vgGeneNameFromId	hg/lib/visiGene.c	/^char *vgGeneNameFromId(struct sqlConnection *conn, int geneId)$/;"	f
vgGetDot	inc/vGfx.h	112;"	d
vgGetFontPixelHeight	inc/vGfx.h	178;"	d
vgGetFontStringWidth	inc/vGfx.h	182;"	d
vgGetHint	inc/vGfx.h	174;"	d
vgHalfInit	lib/vGfx.c	/^struct vGfx *vgHalfInit(int width, int height)$/;"	f
vgLine	inc/vGfx.h	119;"	d
vgMgMethods	lib/memgfx.c	/^void vgMgMethods(struct vGfx *vg)$/;"	f
vgOpenGif	lib/vGif.c	/^struct vGfx *vgOpenGif(int width, int height, char *fileName, boolean useTransparency)$/;"	f
vgOpenPng	lib/vPng.c	/^struct vGfx *vgOpenPng(int width, int height, char *fileName, boolean useTransparency)$/;"	f
vgOpenPostScript	lib/pscmGfx.c	/^struct vGfx *vgOpenPostScript(int width, int height, char *fileName)$/;"	f
vgSetClip	inc/vGfx.h	143;"	d
vgSetHint	inc/vGfx.h	170;"	d
vgSetWriteMode	inc/vGfx.h	139;"	d
vgText	inc/vGfx.h	122;"	d
vgTextCentered	inc/vGfx.h	129;"	d
vgTextRight	inc/vGfx.h	125;"	d
vgUnclip	inc/vGfx.h	147;"	d
vgVerticalSmear	inc/vGfx.h	155;"	d
vg_box	lib/vGfxPrivate.h	/^typedef void (*vg_box)(void *v, int x, int y, $/;"	t
vg_close	lib/vGfxPrivate.h	/^typedef void (*vg_close)(void **pV);$/;"	t
vg_colorIxToRgb	lib/vGfxPrivate.h	/^typedef struct rgbColor (*vg_colorIxToRgb)(void *v, int colorIx);$/;"	t	typeref:struct:vg_colorIxToRgb
vg_dot	lib/vGfxPrivate.h	/^typedef void (*vg_dot)(void *v, int x, int y, int colorIx);$/;"	t
vg_drawPoly	lib/vGfxPrivate.h	/^typedef void (*vg_drawPoly)(void *v, struct gfxPoly *poly, Color color, boolean filled);$/;"	t
vg_fillUnder	lib/vGfxPrivate.h	/^typedef void (*vg_fillUnder)(void *v, int x1, int y1, $/;"	t
vg_findColorIx	lib/vGfxPrivate.h	/^typedef int (*vg_findColorIx)(void *v, int r, int g, int b);$/;"	t
vg_getDot	lib/vGfxPrivate.h	/^typedef int (*vg_getDot)(void *v, int x, int y);$/;"	t
vg_getFontPixelHeight	lib/vGfxPrivate.h	/^typedef int (*vg_getFontPixelHeight)(void *v, void *font);$/;"	t
vg_getFontStringWidth	lib/vGfxPrivate.h	/^typedef int (*vg_getFontStringWidth)(void *v, void *font, char *string);$/;"	t
vg_getHint	lib/vGfxPrivate.h	/^typedef char * (*vg_getHint)(void *v, char *hint);$/;"	t
vg_line	lib/vGfxPrivate.h	/^typedef void (*vg_line)(void *v, $/;"	t
vg_setClip	lib/vGfxPrivate.h	/^typedef void (*vg_setClip)(void *v, int x, int y, int width, int height);$/;"	t
vg_setHint	lib/vGfxPrivate.h	/^typedef void (*vg_setHint)(void *v, char *hint, char *value);$/;"	t
vg_setWriteMode	lib/vGfxPrivate.h	/^typedef void (*vg_setWriteMode)(void *v, unsigned int writeMode);$/;"	t
vg_text	lib/vGfxPrivate.h	/^typedef void (*vg_text)(void *v, int x, int y, int colorIx, void *font,$/;"	t
vg_textCentered	lib/vGfxPrivate.h	/^typedef void (*vg_textCentered)(void *v, int x, int y, int width, int height,$/;"	t
vg_textRight	lib/vGfxPrivate.h	/^typedef void (*vg_textRight)(void *v, int x, int y, int width, int height,$/;"	t
vg_unclip	lib/vGfxPrivate.h	/^typedef void (*vg_unclip)(void *v);$/;"	t
vg_verticalSmear	lib/vGfxPrivate.h	/^typedef void (*vg_verticalSmear)(void *v,$/;"	t
vgsExact	hg/inc/visiGene.h	/^    vgsExact = 1,$/;"	e	enum:visiGeneSearchType
vgsLike	hg/inc/visiGene.h	/^    vgsLike = 3,$/;"	e	enum:visiGeneSearchType
vgsNone	hg/inc/visiGene.h	/^    vgsNone = 0,$/;"	e	enum:visiGeneSearchType
vgsPrefix	hg/inc/visiGene.h	/^    vgsPrefix = 2,$/;"	e	enum:visiGeneSearchType
viewLimitsCompositeOverride	hg/lib/wiggleCart.c	/^static void viewLimitsCompositeOverride(struct trackDb *tdb,char *name,$/;"	f	file:
visCompositeViewDefault	hg/lib/hui.c	/^enum trackVisibility visCompositeViewDefault(struct trackDb *parentTdb,char *view)$/;"	f
visiGeneAbUrl	hg/lib/visiGene.c	/^char *visiGeneAbUrl(struct sqlConnection *conn, int id)$/;"	f
visiGeneAcknowledgement	hg/lib/visiGene.c	/^char *visiGeneAcknowledgement(struct sqlConnection *conn, int id)$/;"	f
visiGeneBodyPart	hg/lib/visiGene.c	/^char *visiGeneBodyPart(struct sqlConnection *conn, int id)$/;"	f
visiGeneCaption	hg/lib/visiGene.c	/^char *visiGeneCaption(struct sqlConnection *conn, int id)$/;"	f
visiGeneContributors	hg/lib/visiGene.c	/^char *visiGeneContributors(struct sqlConnection *conn, int id)$/;"	f
visiGeneCopyright	hg/lib/visiGene.c	/^char *visiGeneCopyright(struct sqlConnection *conn, int id)$/;"	f
visiGeneEmbedding	hg/lib/visiGene.c	/^char *visiGeneEmbedding(struct sqlConnection *conn, int id)$/;"	f
visiGeneFixation	hg/lib/visiGene.c	/^char *visiGeneFixation(struct sqlConnection *conn, int id)$/;"	f
visiGeneFullSizePath	hg/lib/visiGene.c	/^char *visiGeneFullSizePath(struct sqlConnection *conn, int id)$/;"	f
visiGeneGenbank	hg/lib/visiGene.c	/^struct slName *visiGeneGenbank(struct sqlConnection *conn, int id)$/;"	f
visiGeneGeneName	hg/lib/visiGene.c	/^struct slName *visiGeneGeneName(struct sqlConnection *conn, int id)$/;"	f
visiGeneGenotypes	hg/lib/visiGene.c	/^struct slName *visiGeneGenotypes(struct sqlConnection *conn, int id)$/;"	f
visiGeneImageFile	hg/lib/visiGene.c	/^int visiGeneImageFile(struct sqlConnection *conn, int id)$/;"	f
visiGeneImageSize	hg/lib/visiGene.c	/^boolean visiGeneImageSize(struct sqlConnection *conn, int id, int *imageWidth, int *imageHeight)$/;"	f
visiGeneImagesForFile	hg/lib/visiGene.c	/^struct slInt *visiGeneImagesForFile(struct sqlConnection *conn, $/;"	f
visiGeneItemUrl	hg/lib/visiGene.c	/^char *visiGeneItemUrl(struct sqlConnection *conn, int id)$/;"	f
visiGeneOrganism	hg/lib/visiGene.c	/^char *visiGeneOrganism(struct sqlConnection *conn, int id)$/;"	f
visiGenePaneLabel	hg/lib/visiGene.c	/^char *visiGenePaneLabel(struct sqlConnection *conn, int id)$/;"	f
visiGenePermeablization	hg/lib/visiGene.c	/^char *visiGenePermeablization(struct sqlConnection *conn, int id)$/;"	f
visiGenePubUrl	hg/lib/visiGene.c	/^char *visiGenePubUrl(struct sqlConnection *conn, int id)$/;"	f
visiGenePublication	hg/lib/visiGene.c	/^char *visiGenePublication(struct sqlConnection *conn, int id)$/;"	f
visiGeneRefSeq	hg/lib/visiGene.c	/^struct slName *visiGeneRefSeq(struct sqlConnection *conn, int id)$/;"	f
visiGeneSearchType	hg/inc/visiGene.h	/^enum visiGeneSearchType $/;"	g
visiGeneSelectGenbank	hg/lib/visiGene.c	/^struct slInt *visiGeneSelectGenbank(struct sqlConnection *conn, char *acc)$/;"	f
visiGeneSelectLocusLink	hg/lib/visiGene.c	/^struct slInt *visiGeneSelectLocusLink(struct sqlConnection *conn, char *id)$/;"	f
visiGeneSelectNamed	hg/lib/visiGene.c	/^struct slInt *visiGeneSelectNamed(struct sqlConnection *conn,$/;"	f
visiGeneSelectRefSeq	hg/lib/visiGene.c	/^struct slInt *visiGeneSelectRefSeq(struct sqlConnection *conn, char *acc)$/;"	f
visiGeneSelectUniProt	hg/lib/visiGene.c	/^struct slInt *visiGeneSelectUniProt(struct sqlConnection *conn, char *acc)$/;"	f
visiGeneSetUrl	hg/lib/visiGene.c	/^char *visiGeneSetUrl(struct sqlConnection *conn, int id)$/;"	f
visiGeneSex	hg/lib/visiGene.c	/^char *visiGeneSex(struct sqlConnection *conn, int id)$/;"	f
visiGeneSliceType	hg/lib/visiGene.c	/^char *visiGeneSliceType(struct sqlConnection *conn, int id)$/;"	f
visiGeneStage	hg/lib/visiGene.c	/^char *visiGeneStage(struct sqlConnection *conn, int id, boolean doLong)$/;"	f
visiGeneStrain	hg/lib/visiGene.c	/^char *visiGeneStrain(struct sqlConnection *conn, int id)$/;"	f
visiGeneSubmissionSource	hg/lib/visiGene.c	/^char *visiGeneSubmissionSource(struct sqlConnection *conn, int id)$/;"	f
visiGeneSubmitId	hg/lib/visiGene.c	/^char *visiGeneSubmitId(struct sqlConnection *conn, int id)$/;"	f
visiGeneThumbSizePath	hg/lib/visiGene.c	/^char *visiGeneThumbSizePath(struct sqlConnection *conn, int id)$/;"	f
visiGeneUniProt	hg/lib/visiGene.c	/^struct slName *visiGeneUniProt(struct sqlConnection *conn, int id)$/;"	f
visiGeneYear	hg/lib/visiGene.c	/^int visiGeneYear(struct sqlConnection *conn, int id)$/;"	f
visibility	hg/inc/trackDb.h	/^    unsigned char visibility;	\/* 0=hide, 1=dense, 2=full, 3=pack, 4=squish *\/$/;"	m	struct:trackDb
visibility	hg/inc/trackTable.h	/^    unsigned char visibility;	\/* 0=hide, 1=dense, 2=full *\/$/;"	m	struct:trackTable
visited	inc/diGraph.h	/^    bool visited;       \/* Visit order in depth first traversal. *\/$/;"	m	struct:dgNode
vntr	hg/inc/vntr.h	/^struct vntr$/;"	s
vntrCommaIn	hg/lib/vntr.c	/^struct vntr *vntrCommaIn(char **pS, struct vntr *ret)$/;"	f
vntrCommaOut	hg/inc/vntr.h	64;"	d
vntrFree	hg/lib/vntr.c	/^void vntrFree(struct vntr **pEl)$/;"	f
vntrFreeList	hg/lib/vntr.c	/^void vntrFreeList(struct vntr **pList)$/;"	f
vntrLoad	hg/lib/vntr.c	/^struct vntr *vntrLoad(char **row)$/;"	f
vntrLoadAll	hg/lib/vntr.c	/^struct vntr *vntrLoadAll(char *fileName) $/;"	f
vntrLoadAllByChar	hg/lib/vntr.c	/^struct vntr *vntrLoadAllByChar(char *fileName, char chopper) $/;"	f
vntrLoadAllByTab	hg/inc/vntr.h	42;"	d
vntrOutput	hg/lib/vntr.c	/^void vntrOutput(struct vntr *el, FILE *f, char sep, char lastSep) $/;"	f
vntrStaticLoad	hg/lib/vntr.c	/^void vntrStaticLoad(char **row, struct vntr *ret)$/;"	f
vntrTabOut	hg/inc/vntr.h	61;"	d
vtBinary	hg/inc/metaTbl.h	/^    vtBinary =2   \/\/ Could support binary blobs$/;"	e	enum:metaVarType
vtTxt	hg/inc/metaTbl.h	/^    vtTxt    =1,  \/\/ Txt is default$/;"	e	enum:metaVarType
vtUnknown	hg/inc/metaTbl.h	/^    vtUnknown=0,  \/\/ Unknown type$/;"	e	enum:metaVarType
wabAli	hg/inc/wabAli.h	/^struct wabAli$/;"	s
wabAliCommaIn	hg/lib/wabAli.c	/^struct wabAli *wabAliCommaIn(char **pS, struct wabAli *ret)$/;"	f
wabAliCommaOut	hg/inc/wabAli.h	52;"	d
wabAliFree	hg/lib/wabAli.c	/^void wabAliFree(struct wabAli **pEl)$/;"	f
wabAliFreeList	hg/lib/wabAli.c	/^void wabAliFreeList(struct wabAli **pList)$/;"	f
wabAliLoad	hg/lib/wabAli.c	/^struct wabAli *wabAliLoad(char **row)$/;"	f
wabAliOutput	hg/lib/wabAli.c	/^void wabAliOutput(struct wabAli *el, FILE *f, char sep, char lastSep) $/;"	f
wabAliStaticLoad	hg/lib/wabAli.c	/^void wabAliStaticLoad(char **row, struct wabAli *ret)$/;"	f
wabAliTabOut	hg/inc/wabAli.h	49;"	d
waitOnOne	lib/pipeline.c	/^static void waitOnOne(struct pipeline *pl)$/;"	f	file:
wantMem	lib/memalloc.c	/^void *wantMem(size_t size)$/;"	f
warn	inc/common.h	54;"	d
warn	lib/errabort.c	/^void warn(char *format, ...)$/;"	f
warnAbortHandler	lib/errabort.c	/^static void warnAbortHandler(char *format, va_list args)$/;"	f	file:
warnAboutDupes	lib/snofmake.c	/^boolean warnAboutDupes(struct offsetList **array, int size)$/;"	f
warnArray	lib/errabort.c	/^    WarnHandler warnArray[maxWarnHandlers];$/;"	m	struct:perThreadAbortVars	file:
warnIx	lib/errabort.c	/^    int warnIx;$/;"	m	struct:perThreadAbortVars	file:
warnWithBackTrace	lib/errabort.c	/^void warnWithBackTrace(char *format, ...)$/;"	f
waysIn	jkOwnLib/supStitch.c	/^    struct ssEdge *waysIn;	\/* Edges leading into this node. *\/$/;"	m	struct:ssNode	typeref:struct:ssNode::ssEdge	file:
waysOut	lib/dgRange.c	/^   struct bfEdge *waysOut;     \/* Ways out. *\/$/;"	m	struct:bfVertex	typeref:struct:bfVertex::bfEdge	file:
wcel_wdt	lib/gemfont.h	/^WORD	wcel_wdt;	\/* Widest 'cell' width (includes distance to next character) *\/$/;"	m	struct:font_hdr
wchr_wdt	lib/gemfont.h	/^WORD	wchr_wdt;	\/* Widest character width. *\/$/;"	m	struct:font_hdr
weaveAli	jkOwnLib/fuzzyFind.c	/^static struct ffAli *weaveAli(struct ffAli *hitList, $/;"	f	file:
webAbort	hg/lib/web.c	/^void webAbort(char* title, char* format, ...)$/;"	f
webEnd	hg/lib/web.c	/^void webEnd()$/;"	f
webEndSection	hg/lib/web.c	/^static void webEndSection()$/;"	f	file:
webEndSectionTables	hg/lib/web.c	/^void webEndSectionTables()$/;"	f
webFinishPartialLinkOutTable	hg/lib/web.c	/^void webFinishPartialLinkOutTable(int rowIx, int itemPos, int maxPerRow)$/;"	f
webFinishPartialLinkTable	hg/lib/web.c	/^void webFinishPartialLinkTable(int rowIx, int itemPos, int maxPerRow)$/;"	f
webGotWarnings	hg/lib/web.c	/^boolean webGotWarnings()$/;"	f
webHeadAlreadyOutputed	hg/lib/web.c	/^boolean webHeadAlreadyOutputed = FALSE;$/;"	v
webInTextMode	hg/lib/web.c	/^boolean webInTextMode = FALSE;$/;"	v
webIncludeFile	hg/lib/web.c	/^void webIncludeFile(char *file)$/;"	f
webIncludeHelpFile	hg/lib/web.c	/^void webIncludeHelpFile(char *fileRoot, boolean addHorizLine)$/;"	f
webIncludeResourceFile	hg/inc/web.h	280;"	d
webIncludeResourcePrintToFile	hg/lib/web.c	/^boolean webIncludeResourcePrintToFile(FILE * toFile, char *fileName)$/;"	f
webNewSection	hg/lib/web.c	/^void webNewSection(char* format, ...)$/;"	f
webPopErrHandlers	hg/lib/web.c	/^void webPopErrHandlers(void)$/;"	f
webPrintDoubleCell	hg/lib/web.c	/^void webPrintDoubleCell(double val)$/;"	f
webPrintIntCell	hg/lib/web.c	/^void webPrintIntCell(int val)$/;"	f
webPrintLabelCell	hg/lib/web.c	/^void webPrintLabelCell(char *label)$/;"	f
webPrintLinkCell	hg/lib/web.c	/^void webPrintLinkCell(char *link)$/;"	f
webPrintLinkCellEnd	hg/lib/web.c	/^void webPrintLinkCellEnd()$/;"	f
webPrintLinkCellRightStart	hg/lib/web.c	/^void webPrintLinkCellRightStart()$/;"	f
webPrintLinkCellStart	hg/lib/web.c	/^void webPrintLinkCellStart()$/;"	f
webPrintLinkOutCellStart	hg/lib/web.c	/^void webPrintLinkOutCellStart()$/;"	f
webPrintLinkTableEnd	hg/lib/web.c	/^void webPrintLinkTableEnd()$/;"	f
webPrintLinkTableNewRow	hg/lib/web.c	/^void webPrintLinkTableNewRow()$/;"	f
webPrintLinkTableStart	hg/lib/web.c	/^void webPrintLinkTableStart()$/;"	f
webPrintWideCellStart	hg/lib/web.c	/^void webPrintWideCellStart(int colSpan, char *bgColorRgb)$/;"	f
webPrintWideCenteredLabelCell	hg/lib/web.c	/^void webPrintWideCenteredLabelCell(char *label, int colSpan)$/;"	f
webPrintWideLabelCell	hg/lib/web.c	/^void webPrintWideLabelCell(char *label, int colSpan)$/;"	f
webPushErrHandlers	hg/lib/web.c	/^void webPushErrHandlers(void)$/;"	f
webPushErrHandlersCart	hg/lib/web.c	/^void webPushErrHandlersCart(struct cart *cart)$/;"	f
webServerSpecific	lib/portimpl.h	/^struct webServerSpecific$/;"	s
webSetStyle	hg/lib/web.c	/^void webSetStyle(char *style)$/;"	f
webStart	hg/lib/web.c	/^void webStart(struct cart *theCart, char *db, char *format, ...)$/;"	f
webStartHeader	hg/lib/web.c	/^void webStartHeader(struct cart *theCart, char *db, char *headerText, char *format, ...)$/;"	f
webStartText	hg/lib/web.c	/^void webStartText()$/;"	f
webStartWrapper	hg/lib/web.c	/^void webStartWrapper(struct cart *theCart, char *db, char *format, va_list args, boolean withHttpHeader, boolean withLogo)$/;"	f
webStartWrapperDetailedArgs	hg/lib/web.c	/^void webStartWrapperDetailedArgs(struct cart *theCart, char *db,$/;"	f
webStartWrapperDetailedInternal	hg/lib/web.c	/^static void webStartWrapperDetailedInternal(struct cart *theCart,$/;"	f	file:
webStartWrapperDetailedNoArgs	hg/lib/web.c	/^void webStartWrapperDetailedNoArgs(struct cart *theCart, char *db,$/;"	f
webStartWrapperGateway	hg/lib/web.c	/^void webStartWrapperGateway(struct cart *theCart, char *db, char *format, va_list args, boolean withHttpHeader, boolean withLogo, boolean skipSectionHeader)$/;"	f
webStartWrapperGatewayHeader	hg/lib/web.c	/^void webStartWrapperGatewayHeader(struct cart *theCart, char *db,$/;"	f
webTimeStampedLinkToResource	hg/lib/web.c	/^char *webTimeStampedLinkToResource(char *fileName, boolean wrapInHtml)$/;"	f
webTimeStampedLinkToResourceOnFirstCall	hg/lib/web.c	/^char *webTimeStampedLinkToResourceOnFirstCall(char *fileName, boolean wrapInHtml)$/;"	f
webVaWarn	hg/lib/web.c	/^void webVaWarn(char *format, va_list args)$/;"	f
weight	hg/inc/snp125.h	/^    unsigned weight;	\/* The quality of the alignment *\/$/;"	m	struct:snp125
weight	hg/inc/snp125.h	/^    unsigned weight;	\/* The quality of the alignment *\/$/;"	m	struct:snp125Extended
weight	hg/inc/snp132Ext.h	/^    unsigned weight;	\/* The quality of the alignment: 1 = unique mapping, 2 = non-unique, 3 = many matches *\/$/;"	m	struct:snp132Ext
wgRna	hg/inc/wgRna.h	/^struct wgRna$/;"	s
wgRnaCommaIn	hg/lib/wgRna.c	/^struct wgRna *wgRnaCommaIn(char **pS, struct wgRna *ret)$/;"	f
wgRnaCommaOut	hg/inc/wgRna.h	64;"	d
wgRnaFree	hg/lib/wgRna.c	/^void wgRnaFree(struct wgRna **pEl)$/;"	f
wgRnaFreeList	hg/lib/wgRna.c	/^void wgRnaFreeList(struct wgRna **pList)$/;"	f
wgRnaLoad	hg/lib/wgRna.c	/^struct wgRna *wgRnaLoad(char **row)$/;"	f
wgRnaLoadAll	hg/lib/wgRna.c	/^struct wgRna *wgRnaLoadAll(char *fileName) $/;"	f
wgRnaLoadAllByChar	hg/lib/wgRna.c	/^struct wgRna *wgRnaLoadAllByChar(char *fileName, char chopper) $/;"	f
wgRnaLoadAllByTab	hg/inc/wgRna.h	42;"	d
wgRnaOutput	hg/lib/wgRna.c	/^void wgRnaOutput(struct wgRna *el, FILE *f, char sep, char lastSep) $/;"	f
wgRnaStaticLoad	hg/lib/wgRna.c	/^void wgRnaStaticLoad(char **row, struct wgRna *ret)$/;"	f
wgRnaTabOut	hg/inc/wgRna.h	61;"	d
whereClause	inc/rql.h	/^    struct rqlParse *whereClause;	\/* Where clause if any - in parse tree. *\/$/;"	m	struct:rqlStatement	typeref:struct:rqlStatement::rqlParse
whereVarList	inc/rql.h	/^    struct slName *whereVarList;	\/* List of variables used in where clause. *\/$/;"	m	struct:rqlStatement	typeref:struct:rqlStatement::slName
whi	lib/gifcodes.h	/^	unsigned char wlo,whi;$/;"	m	struct:gif_header
whi	lib/gifcodes.h	/^	unsigned char wlo,whi;$/;"	m	struct:gif_image
whichSeqIn	lib/dnaseq.c	/^bioSeq *whichSeqIn(bioSeq **seqs, int seqCount, char *letters)$/;"	f
whiteSpaceChopper	lib/common.c	/^char whiteSpaceChopper[] = " \\t\\n\\r";$/;"	v
who	hg/inc/trackVersion.h	/^    char *who;	\/* Unix userID that performed this update *\/$/;"	m	struct:trackVersion
wiAvg	hg/inc/recombRateMouse.h	/^    float wiAvg;	\/* Calculated WI genetic map recombination rate *\/$/;"	m	struct:recombRateMouse
wiRhChrom	hg/inc/stsMap.h	/^    char *wiRhChrom;	\/* Chromosome (no chr) from Whitehead RH map or 0 if none *\/$/;"	m	struct:stsMap
wiRhPos	hg/inc/stsMap.h	/^    float wiRhPos;	\/* Position on wi_rh map *\/$/;"	m	struct:stsMap
wiYacChrom	hg/inc/stsMap.h	/^    char *wiYacChrom;	\/* Chromosome (no chr) from Whitehead YAC map or 0 if none *\/$/;"	m	struct:stsMap
wiYacChrom	hg/inc/stsMarker.h	/^    char *wiYacChrom;	\/* Chromosome (no chr) from wi_yac map or 0 if none *\/$/;"	m	struct:stsMarker
wiYacPos	hg/inc/stsMap.h	/^    float wiYacPos;	\/* Position on wi_yac map *\/$/;"	m	struct:stsMap
wiYacPos	hg/inc/stsMarker.h	/^    float wiYacPos;	\/* Position on wi_yac map *\/$/;"	m	struct:stsMarker
wibF	hg/lib/annoStreamWig.c	/^    FILE *wibF;				\/\/ wib file handle$/;"	m	struct:annoStreamWig	file:
wibFH	hg/inc/wiggle.h	/^    int wibFH;			\/*	wibFile handle	*\/$/;"	m	struct:wiggleDataStream
wibFH	hg/lib/wiggleUtils.c	/^static FILE *wibFH = (FILE *) NULL;		\/* file handle to binary file *\/$/;"	v	file:
wibFile	hg/inc/customTrack.h	/^    char *wibFile;		\/* name of .wib file in trash *\/$/;"	m	struct:customTrack
wibFile	hg/inc/wiggle.h	/^    char *wibFile;		\/*	for use during reading	*\/$/;"	m	struct:wiggleDataStream
wibFile	hg/lib/annoStreamWig.c	/^    char *wibFile;			\/\/ name of wib file on which wibF was opened$/;"	m	struct:annoStreamWig	file:
wibFileName	hg/lib/wigAsciiToBinary.c	/^static char *wibFileName = (char *)NULL;	\/* for use in output_row() *\/$/;"	v	file:
wibSize	hg/lib/wigAsciiToBinary.c	/^static long long wibSize = 0;	\/*	counting up to limit *\/$/;"	v	file:
wibSizeLimit	hg/inc/wiggle.h	/^    long long wibSizeLimit;	\/*	governor on ct trash files *\/$/;"	m	struct:wigEncodeOptions
wibSizeLimit	hg/lib/wigAsciiToBinary.c	/^static long long wibSizeLimit = 0;	\/*	governor on ct trash files *\/$/;"	v	file:
width	hg/inc/genoLay.h	/^     int width,height; 	\/* Pixel width and height *\/$/;"	m	struct:genoLayChrom
width	hg/inc/hvGfx.h	/^    int width, height;       \/* Virtual pixel dimensions. *\/$/;"	m	struct:hvGfx
width	inc/memgfx.h	/^    int width, height;$/;"	m	struct:memGfx
width	inc/vGfx.h	/^    int width, height;  \/* Virtual pixel dimensions. *\/$/;"	m	struct:vGfx
wigAscii	hg/inc/customTrack.h	/^    char *wigAscii;		\/* wiggle ascii data file name in trash .wia *\/$/;"	m	struct:customTrack
wigAsciiData	hg/inc/wiggle.h	/^struct wigAsciiData$/;"	s
wigAsciiToBinary	hg/lib/wigAsciiToBinary.c	/^void wigAsciiToBinary( char *wigAscii, char *wigFile, char *wibFile,$/;"	f
wigCfgUi	hg/lib/hui.c	/^void wigCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed)$/;"	f
wigCheckBinaryOption	hg/lib/wiggleCart.c	/^static char *wigCheckBinaryOption(struct trackDb *tdb, char *Default,$/;"	f	file:
wigChr	hg/inc/stsInfoMouseNew.h	/^    char *wigChr;	\/* Chromosome in Genetic map *\/$/;"	m	struct:stsInfoMouseNew
wigChr	hg/inc/stsMapMouseNew.h	/^    char *wigChr;	\/* Chromosome (no chr) from FHHxACI genetic or 0 if none *\/$/;"	m	struct:stsMapMouseNew
wigCmpSwitch	hg/inc/wiggle.h	/^    enum wigCompare wigCmpSwitch;	\/*	for compare function switch *\/$/;"	m	struct:wiggleDataStream	typeref:enum:wiggleDataStream::wigCompare
wigCompare	hg/inc/wiggle.h	/^enum wigCompare$/;"	g
wigCompareFromString	hg/lib/wigDataStream.c	/^enum wigCompare wigCompareFromString(char *string)$/;"	f
wigCompareValFilter	hg/lib/wigDataStream.c	/^boolean wigCompareValFilter(double val, enum wigCompare cmp, double ll, double ul)$/;"	f
wigDataFetchType	hg/inc/wiggle.h	/^enum wigDataFetchType$/;"	g
wigDbGetLimits	hg/lib/customFactory.c	/^static void wigDbGetLimits(struct sqlConnection *conn, char *tableName,$/;"	f	file:
wigDebugOpen	hg/lib/wiggleCart.c	/^static void wigDebugOpen(char * name) {$/;"	f	file:
wigDebugPrint	hg/lib/wiggleCart.c	/^void wigDebugPrint(char * name) {$/;"	f
wigEncodeOptions	hg/inc/wiggle.h	/^struct wigEncodeOptions$/;"	s
wigEncodeStartingLowerLimit	hg/inc/wiggle.h	319;"	d
wigEncodeStartingUpperLimit	hg/inc/wiggle.h	318;"	d
wigEqual_e	hg/inc/wiggle.h	/^    wigNoOp_e, wigInRange_e, wigLessThan_e, wigLessEqual_e, wigEqual_e,$/;"	e	enum:wigCompare
wigFactory	hg/lib/customFactory.c	/^static struct customFactory wigFactory =$/;"	v	typeref:struct:customFactory	file:
wigFetchAggregateValWithCart	hg/lib/wiggleCart.c	/^char *wigFetchAggregateValWithCart(struct cart *cart, struct trackDb *tdb)$/;"	f
wigFetchAlwaysZero	hg/inc/wiggle.h	201;"	d
wigFetchAlwaysZeroWithCart	hg/lib/wiggleCart.c	/^enum wiggleGridOptEnum wigFetchAlwaysZeroWithCart(struct cart *theCart,$/;"	f
wigFetchAscii	hg/inc/wiggle.h	/^    wigFetchNoOp = 1, wigFetchAscii = 2, wigFetchBed = 4, wigFetchStats = 8,$/;"	e	enum:wigDataFetchType
wigFetchAutoScale	hg/inc/wiggle.h	213;"	d
wigFetchAutoScaleWithCart	hg/lib/wiggleCart.c	/^enum wiggleScaleOptEnum wigFetchAutoScaleWithCart(struct cart *theCart,$/;"	f
wigFetchBed	hg/inc/wiggle.h	/^    wigFetchNoOp = 1, wigFetchAscii = 2, wigFetchBed = 4, wigFetchStats = 8,$/;"	e	enum:wigDataFetchType
wigFetchData	hg/lib/wiggleUtils.c	/^struct wiggleData *wigFetchData(char *db, char *table, char *chromName,$/;"	f
wigFetchDataArray	hg/inc/wiggle.h	/^	wigFetchDataArray = 16, wigFetchRawStats = 32,$/;"	e	enum:wigDataFetchType
wigFetchGraphType	hg/inc/wiggle.h	219;"	d
wigFetchGraphTypeWithCart	hg/lib/wiggleCart.c	/^enum wiggleGraphOptEnum wigFetchGraphTypeWithCart(struct cart *theCart,$/;"	f
wigFetchHorizontalGrid	hg/inc/wiggle.h	207;"	d
wigFetchHorizontalGridWithCart	hg/lib/wiggleCart.c	/^enum wiggleGridOptEnum wigFetchHorizontalGridWithCart(struct cart *theCart,$/;"	f
wigFetchMinMaxLimits	hg/inc/wiggle.h	183;"	d
wigFetchMinMaxLimitsWithCart	hg/lib/wiggleCart.c	/^void wigFetchMinMaxLimitsWithCart(struct cart *theCart, struct trackDb *tdb, char *name,$/;"	f
wigFetchMinMaxPixels	hg/inc/wiggle.h	189;"	d
wigFetchMinMaxPixelsWithCart	hg/lib/wiggleCart.c	/^void wigFetchMinMaxPixelsWithCart(struct cart *theCart, struct trackDb *tdb, char *name,int *Min, int *Max, int *Default)$/;"	f
wigFetchMinMaxY	hg/inc/wiggle.h	177;"	d
wigFetchMinMaxYWithCart	hg/lib/wiggleCart.c	/^void wigFetchMinMaxYWithCart(struct cart *theCart, struct trackDb *tdb, char *name,$/;"	f
wigFetchNoOp	hg/inc/wiggle.h	/^    wigFetchNoOp = 1, wigFetchAscii = 2, wigFetchBed = 4, wigFetchStats = 8,$/;"	e	enum:wigDataFetchType
wigFetchRawStats	hg/inc/wiggle.h	/^	wigFetchDataArray = 16, wigFetchRawStats = 32,$/;"	e	enum:wigDataFetchType
wigFetchSmoothingWindow	hg/inc/wiggle.h	231;"	d
wigFetchSmoothingWindowWithCart	hg/lib/wiggleCart.c	/^enum wiggleSmoothingEnum wigFetchSmoothingWindowWithCart(struct cart *theCart,$/;"	f
wigFetchStats	hg/inc/wiggle.h	/^    wigFetchNoOp = 1, wigFetchAscii = 2, wigFetchBed = 4, wigFetchStats = 8,$/;"	e	enum:wigDataFetchType
wigFetchTransformFunc	hg/inc/wiggle.h	195;"	d
wigFetchTransformFuncWithCart	hg/lib/wiggleCart.c	/^enum wiggleGridOptEnum wigFetchTransformFuncWithCart(struct cart *theCart,$/;"	f
wigFetchWindowingFunction	hg/inc/wiggle.h	225;"	d
wigFetchWindowingFunctionWithCart	hg/lib/wiggleCart.c	/^enum wiggleWindowingEnum wigFetchWindowingFunctionWithCart(struct cart *theCart,$/;"	f
wigFetchYLineMark	hg/inc/wiggle.h	237;"	d
wigFetchYLineMarkValue	hg/inc/wiggle.h	243;"	d
wigFetchYLineMarkValueWithCart	hg/lib/wiggleCart.c	/^void wigFetchYLineMarkValueWithCart(struct cart *theCart,struct trackDb *tdb, char *name, double *tDbYMark )$/;"	f
wigFetchYLineMarkWithCart	hg/lib/wiggleCart.c	/^enum wiggleYLineMarkEnum wigFetchYLineMarkWithCart(struct cart *theCart,$/;"	f
wigFile	hg/inc/customTrack.h	/^    char *wigFile;		\/* name of .wig file in trash *\/$/;"	m	struct:customTrack
wigFree	hg/lib/wiggleUtils.c	/^static void wigFree(struct wiggleData **pEl)$/;"	f	file:
wigFreeData	hg/lib/wiggleUtils.c	/^void wigFreeData(struct wiggleData **pList)$/;"	f
wigGeneticPos	hg/inc/stsInfoMouseNew.h	/^    float wigGeneticPos;	\/* Position in Genetic map *\/$/;"	m	struct:stsInfoMouseNew
wigGreaterEqual_e	hg/inc/wiggle.h	/^	wigNotEqual_e, wigGreaterEqual_e, wigGreaterThan_e,$/;"	e	enum:wigCompare
wigGreaterThan_e	hg/inc/wiggle.h	/^	wigNotEqual_e, wigGreaterEqual_e, wigGreaterThan_e,$/;"	e	enum:wigCompare
wigInRange_e	hg/inc/wiggle.h	/^    wigNoOp_e, wigInRange_e, wigLessThan_e, wigLessEqual_e, wigEqual_e,$/;"	e	enum:wigCompare
wigIsOverlayTypeAggregate	hg/lib/wiggleCart.c	/^boolean wigIsOverlayTypeAggregate(char *aggregate)$/;"	f
wigLessEqual_e	hg/inc/wiggle.h	/^    wigNoOp_e, wigInRange_e, wigLessThan_e, wigLessEqual_e, wigEqual_e,$/;"	e	enum:wigCompare
wigLessThan_e	hg/inc/wiggle.h	/^    wigNoOp_e, wigInRange_e, wigLessThan_e, wigLessEqual_e, wigEqual_e,$/;"	e	enum:wigCompare
wigLoader	hg/lib/customFactory.c	/^static struct customTrack *wigLoader(struct customFactory *fac,$/;"	f	file:
wigLoaderEncoding	hg/lib/customFactory.c	/^void wigLoaderEncoding(struct customTrack *track, char *wigAscii,$/;"	f
wigLoaderPipe	hg/lib/customFactory.c	/^static struct pipeline *wigLoaderPipe(struct customTrack *track)$/;"	f	file:
wigMafCfgUi	hg/lib/hui.c	/^void wigMafCfgUi(struct cart *cart, struct trackDb *tdb,char *name, char *title, boolean boxed, char *db)$/;"	f
wigMafGetSpecies	hg/lib/hui.c	/^char **wigMafGetSpecies(struct cart *cart, struct trackDb *tdb, char *prefix, char *db, struct wigMafSpecies **list, int *groupCt)$/;"	f
wigMafSpecies	hg/inc/hgMaf.h	/^struct wigMafSpecies$/;"	s
wigMafSpeciesTable	hg/lib/hui.c	/^struct wigMafSpecies * wigMafSpeciesTable(struct cart *cart,$/;"	f
wigMafWiggleVar	hg/lib/hgMaf.c	/^char *wigMafWiggleVar(char *prefix, struct consWiggle *wig,char **suffix)$/;"	f
wigMafWiggles	hg/lib/hgMaf.c	/^struct consWiggle *wigMafWiggles(char *db, struct trackDb *tdb)$/;"	f
wigName	hg/inc/stsInfoMouseNew.h	/^    char *wigName;	\/* WI_Mouse_Genetic map *\/$/;"	m	struct:stsInfoMouseNew
wigNoOp_e	hg/inc/wiggle.h	/^    wigNoOp_e, wigInRange_e, wigLessThan_e, wigLessEqual_e, wigEqual_e,$/;"	e	enum:wigCompare
wigNotEqual_e	hg/inc/wiggle.h	/^	wigNotEqual_e, wigGreaterEqual_e, wigGreaterThan_e,$/;"	e	enum:wigCompare
wigPos	hg/inc/stsMapMouseNew.h	/^    float wigPos;	\/* Position on FHHxACI map *\/$/;"	m	struct:stsMapMouseNew
wigPrintDataConstraint	hg/lib/wigDataStream.c	/^void wigPrintDataConstraint(struct wiggleDataStream *wds, FILE * fh)$/;"	f
wigProfileEnter	hg/lib/wiggleCart.c	/^void wigProfileEnter()$/;"	f
wigProfileEnterTime	hg/lib/wiggleCart.c	/^static long wigProfileEnterTime = 0;$/;"	v	file:
wigProfileLeave	hg/lib/wiggleCart.c	/^long wigProfileLeave()$/;"	f
wigReadDataRow	hg/lib/wiggleUtils.c	/^static struct wiggleData * wigReadDataRow(struct wiggle *wiggle,$/;"	f	file:
wigRecognizer	hg/lib/customFactory.c	/^static boolean wigRecognizer(struct customFactory *fac,$/;"	f	file:
wigRowAvg	lib/annoFormatTab.c	/^static double wigRowAvg(struct annoRow *row)$/;"	f	file:
wigSetCompareFunctions	hg/lib/wigDataStream.c	/^static void wigSetCompareFunctions(struct wiggleDataStream *wds)$/;"	f	file:
wigStatsAcc	hg/lib/wiggleUtils.c	/^static struct wigStatsAcc wigStatsAcc;$/;"	v	typeref:struct:wigStatsAcc	file:
wigStatsAcc	hg/lib/wiggleUtils.c	/^struct wigStatsAcc$/;"	s	file:
wigStatsHeader	hg/lib/wigDataStream.c	/^void wigStatsHeader(struct wiggleDataStream *wds, FILE * fh, boolean htmlOut)$/;"	f
wigStatsTableHeading	hg/lib/wigDataStream.c	/^void wigStatsTableHeading(FILE * fh, boolean htmlOut)$/;"	f
wigStr	hg/lib/annoStreamWig.c	/^    struct annoStreamer *wigStr;	\/\/ Internal streamer for .wig as in wiggle db tables$/;"	m	struct:annoStreamWig	typeref:struct:annoStreamWig::annoStreamer	file:
wiggle	hg/inc/customTrack.h	/^    boolean wiggle;		\/* This is a wiggle track *\/$/;"	m	struct:customTrack
wiggle	hg/inc/wiggle.h	/^struct wiggle$/;"	s
wiggleAlwaysZeroDropDown	hg/lib/hui.c	/^void wiggleAlwaysZeroDropDown(char *var, char *curVal)$/;"	f
wiggleAlwaysZeroEnum	hg/inc/hui.h	/^enum wiggleAlwaysZeroEnum {$/;"	g
wiggleAlwaysZeroOff	hg/inc/hui.h	/^   wiggleAlwaysZeroOff = 0,$/;"	e	enum:wiggleAlwaysZeroEnum
wiggleAlwaysZeroOn	hg/inc/hui.h	/^   wiggleAlwaysZeroOn = 1,$/;"	e	enum:wiggleAlwaysZeroEnum
wiggleAlwaysZeroOptions	hg/lib/hui.c	/^static char *wiggleAlwaysZeroOptions[] = {$/;"	v	file:
wiggleAlwaysZeroToEnum	hg/lib/hui.c	/^enum wiggleAlwaysZeroEnum wiggleAlwaysZeroToEnum(char *string)$/;"	f
wiggleArray	hg/inc/wiggle.h	/^struct wiggleArray$/;"	s
wiggleAsText	hg/inc/wiggle.h	503;"	d
wiggleCommaIn	hg/lib/wiggle.c	/^struct wiggle *wiggleCommaIn(char **pS, struct wiggle *ret)$/;"	f
wiggleCommaOut	hg/inc/wiggle.h	71;"	d
wiggleData	hg/inc/wiggle.h	/^struct wiggleData$/;"	s
wiggleDataFreeList	hg/inc/wiggle.h	493;"	d
wiggleDataStream	hg/inc/wiggle.h	/^struct wiggleDataStream$/;"	s
wiggleDataStreamFree	hg/lib/wigDataStream.c	/^void wiggleDataStreamFree(struct wiggleDataStream **wds)$/;"	f
wiggleDataStreamNew	hg/lib/wigDataStream.c	/^struct wiggleDataStream *wiggleDataStreamNew()$/;"	f
wiggleDatum	hg/inc/wiggle.h	/^struct wiggleDatum$/;"	s
wiggleDropDown	hg/lib/hui.c	/^void wiggleDropDown(char *var, char *curVal)$/;"	f
wiggleEnumToString	hg/lib/hui.c	/^char *wiggleEnumToString(enum wiggleOptEnum x)$/;"	f
wiggleFree	hg/lib/wiggle.c	/^void wiggleFree(struct wiggle **pEl)$/;"	f
wiggleFreeList	hg/lib/wiggle.c	/^void wiggleFreeList(struct wiggle **pList)$/;"	f
wiggleGraphBar	hg/inc/hui.h	/^   wiggleGraphBar = 1,$/;"	e	enum:wiggleGraphOptEnum
wiggleGraphDropDown	hg/lib/hui.c	/^void wiggleGraphDropDown(char *var, char *curVal)$/;"	f
wiggleGraphEnumToString	hg/lib/hui.c	/^char *wiggleGraphEnumToString(enum wiggleGraphOptEnum x)$/;"	f
wiggleGraphOptEnum	hg/inc/hui.h	/^enum wiggleGraphOptEnum {$/;"	g
wiggleGraphOptions	hg/lib/hui.c	/^static char *wiggleGraphOptions[] = {$/;"	v	file:
wiggleGraphPoints	hg/inc/hui.h	/^   wiggleGraphPoints = 0,$/;"	e	enum:wiggleGraphOptEnum
wiggleGraphStringToEnum	hg/lib/hui.c	/^enum wiggleGraphOptEnum wiggleGraphStringToEnum(char *string)$/;"	f
wiggleGridDropDown	hg/lib/hui.c	/^void wiggleGridDropDown(char *var, char *curVal)$/;"	f
wiggleGridEnumToString	hg/lib/hui.c	/^char *wiggleGridEnumToString(enum wiggleGridOptEnum x)$/;"	f
wiggleGridOptEnum	hg/inc/hui.h	/^enum wiggleGridOptEnum {$/;"	g
wiggleGridOptions	hg/lib/hui.c	/^static char *wiggleGridOptions[] = {$/;"	v	file:
wiggleGridStringToEnum	hg/lib/hui.c	/^enum wiggleGridOptEnum wiggleGridStringToEnum(char *string)$/;"	f
wiggleHorizontalGridOff	hg/inc/hui.h	/^   wiggleHorizontalGridOff = 1,$/;"	e	enum:wiggleGridOptEnum
wiggleHorizontalGridOn	hg/inc/hui.h	/^   wiggleHorizontalGridOn = 0,$/;"	e	enum:wiggleGridOptEnum
wiggleLinearInterpolation	hg/inc/hui.h	/^   wiggleLinearInterpolation = 1,$/;"	e	enum:wiggleOptEnum
wiggleLoad	hg/lib/wiggle.c	/^struct wiggle *wiggleLoad(char **row)$/;"	f
wiggleLoadAll	hg/lib/wiggle.c	/^struct wiggle *wiggleLoadAll(char *fileName) $/;"	f
wiggleLoadAllByChar	hg/lib/wiggle.c	/^struct wiggle *wiggleLoadAllByChar(char *fileName, char chopper) $/;"	f
wiggleLoadAllByTab	hg/inc/wiggle.h	49;"	d
wiggleNoInterpolation	hg/inc/hui.h	/^   wiggleNoInterpolation = 0,$/;"	e	enum:wiggleOptEnum
wiggleOptEnum	hg/inc/hui.h	/^enum wiggleOptEnum {$/;"	g
wiggleOptions	hg/lib/hui.c	/^static char *wiggleOptions[] = {$/;"	v	file:
wiggleOutput	hg/lib/wiggle.c	/^void wiggleOutput(struct wiggle *el, FILE *f, char sep, char lastSep) $/;"	f
wiggleScaleAuto	hg/inc/hui.h	/^   wiggleScaleAuto = 1,$/;"	e	enum:wiggleScaleOptEnum
wiggleScaleDropDown	hg/lib/hui.c	/^void wiggleScaleDropDown(char *var, char *curVal)$/;"	f
wiggleScaleEnumToString	hg/lib/hui.c	/^char *wiggleScaleEnumToString(enum wiggleScaleOptEnum x)$/;"	f
wiggleScaleManual	hg/inc/hui.h	/^   wiggleScaleManual = 0,$/;"	e	enum:wiggleScaleOptEnum
wiggleScaleOptEnum	hg/inc/hui.h	/^enum wiggleScaleOptEnum {$/;"	g
wiggleScaleOptions	hg/lib/hui.c	/^static char *wiggleScaleOptions[] = {$/;"	v	file:
wiggleScaleStringToEnum	hg/lib/hui.c	/^enum wiggleScaleOptEnum wiggleScaleStringToEnum(char *string)$/;"	f
wiggleSmoothing10	hg/inc/hui.h	/^   wiggleSmoothing10 = 9,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing11	hg/inc/hui.h	/^   wiggleSmoothing11 = 10,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing12	hg/inc/hui.h	/^   wiggleSmoothing12 = 11,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing13	hg/inc/hui.h	/^   wiggleSmoothing13 = 12,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing14	hg/inc/hui.h	/^   wiggleSmoothing14 = 13,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing15	hg/inc/hui.h	/^   wiggleSmoothing15 = 14,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing16	hg/inc/hui.h	/^   wiggleSmoothing16 = 15,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing2	hg/inc/hui.h	/^   wiggleSmoothing2 = 1,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing3	hg/inc/hui.h	/^   wiggleSmoothing3 = 2,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing4	hg/inc/hui.h	/^   wiggleSmoothing4 = 3,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing5	hg/inc/hui.h	/^   wiggleSmoothing5 = 4,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing6	hg/inc/hui.h	/^   wiggleSmoothing6 = 5,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing7	hg/inc/hui.h	/^   wiggleSmoothing7 = 6,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing8	hg/inc/hui.h	/^   wiggleSmoothing8 = 7,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothing9	hg/inc/hui.h	/^   wiggleSmoothing9 = 8,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothingDropDown	hg/lib/hui.c	/^void wiggleSmoothingDropDown(char *var, char *curVal)$/;"	f
wiggleSmoothingEnum	hg/inc/hui.h	/^enum wiggleSmoothingEnum {$/;"	g
wiggleSmoothingEnumToString	hg/lib/hui.c	/^char *wiggleSmoothingEnumToString(enum wiggleSmoothingEnum x)$/;"	f
wiggleSmoothingMax	hg/inc/hui.h	/^   wiggleSmoothingMax = MAX_SMOOTHING,	\/* Not an option, but lets us keep track of memory to use *\/$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothingOff	hg/inc/hui.h	/^   wiggleSmoothingOff = 0,$/;"	e	enum:wiggleSmoothingEnum
wiggleSmoothingOptions	hg/lib/hui.c	/^static char *wiggleSmoothingOptions[] = {$/;"	v	file:
wiggleSmoothingStringToEnum	hg/lib/hui.c	/^enum wiggleSmoothingEnum wiggleSmoothingStringToEnum(char *string)$/;"	f
wiggleSpanList	hg/lib/wiggleUtils.c	/^int *wiggleSpanList(struct sqlConnection *conn, struct trackDb *tdb)$/;"	f
wiggleStaticLoad	hg/lib/wiggle.c	/^void wiggleStaticLoad(char **row, struct wiggle *ret)$/;"	f
wiggleStats	hg/inc/wiggle.h	/^struct wiggleStats$/;"	s
wiggleStringToEnum	hg/lib/hui.c	/^enum wiggleOptEnum wiggleStringToEnum(char *string)$/;"	f
wiggleTabOut	hg/inc/wiggle.h	68;"	d
wiggleTransformFuncDropDown	hg/lib/hui.c	/^void wiggleTransformFuncDropDown(char *var, char *curVal)$/;"	f
wiggleTransformFuncEnum	hg/inc/hui.h	/^enum wiggleTransformFuncEnum {$/;"	g
wiggleTransformFuncLabels	hg/lib/hui.c	/^static char *wiggleTransformFuncLabels[] = {$/;"	v	file:
wiggleTransformFuncLog	hg/inc/hui.h	/^   wiggleTransformFuncLog = 1,$/;"	e	enum:wiggleTransformFuncEnum
wiggleTransformFuncNone	hg/inc/hui.h	/^   wiggleTransformFuncNone = 0,$/;"	e	enum:wiggleTransformFuncEnum
wiggleTransformFuncOptions	hg/lib/hui.c	/^static char *wiggleTransformFuncOptions[] = {$/;"	v	file:
wiggleTransformFuncToEnum	hg/lib/hui.c	/^enum wiggleTransformFuncEnum wiggleTransformFuncToEnum(char *string)$/;"	f
wiggleWindowingDropDown	hg/lib/hui.c	/^void wiggleWindowingDropDown(char *var, char *curVal)$/;"	f
wiggleWindowingEnum	hg/inc/hui.h	/^enum wiggleWindowingEnum {$/;"	g
wiggleWindowingEnumToString	hg/lib/hui.c	/^char *wiggleWindowingEnumToString(enum wiggleWindowingEnum x)$/;"	f
wiggleWindowingMax	hg/inc/hui.h	/^   wiggleWindowingMax = 1,$/;"	e	enum:wiggleWindowingEnum
wiggleWindowingMean	hg/inc/hui.h	/^   wiggleWindowingMean = 2,$/;"	e	enum:wiggleWindowingEnum
wiggleWindowingMin	hg/inc/hui.h	/^   wiggleWindowingMin = 3,$/;"	e	enum:wiggleWindowingEnum
wiggleWindowingOptions	hg/lib/hui.c	/^static char *wiggleWindowingOptions[] = {$/;"	v	file:
wiggleWindowingStringToEnum	hg/lib/hui.c	/^enum wiggleWindowingEnum wiggleWindowingStringToEnum(char *string)$/;"	f
wiggleWindowingWhiskers	hg/inc/hui.h	/^   wiggleWindowingWhiskers = 0,$/;"	e	enum:wiggleWindowingEnum
wiggleYLineMarkDropDown	hg/lib/hui.c	/^void wiggleYLineMarkDropDown(char *var, char *curVal)$/;"	f
wiggleYLineMarkEnum	hg/inc/hui.h	/^enum wiggleYLineMarkEnum {$/;"	g
wiggleYLineMarkEnumToString	hg/lib/hui.c	/^char *wiggleYLineMarkEnumToString(enum wiggleYLineMarkEnum x)$/;"	f
wiggleYLineMarkOff	hg/inc/hui.h	/^   wiggleYLineMarkOff = 0,$/;"	e	enum:wiggleYLineMarkEnum
wiggleYLineMarkOn	hg/inc/hui.h	/^   wiggleYLineMarkOn = 1,$/;"	e	enum:wiggleYLineMarkEnum
wiggleYLineMarkOptions	hg/lib/hui.c	/^static char *wiggleYLineMarkOptions[] = {$/;"	v	file:
wiggleYLineMarkStringToEnum	hg/lib/hui.c	/^enum wiggleYLineMarkEnum wiggleYLineMarkStringToEnum(char *string)$/;"	f
wigout	hg/lib/wigAsciiToBinary.c	/^static FILE *wigout = (FILE *)NULL;  \/* file handle for wiggle database file *\/$/;"	v	file:
wikiConnect	hg/lib/wikiTrack.c	/^struct sqlConnection *wikiConnect()$/;"	f
wikiDbName	hg/lib/wikiTrack.c	/^char *wikiDbName()$/;"	f
wikiDisconnect	hg/lib/wikiTrack.c	/^void wikiDisconnect(struct sqlConnection **pConn)$/;"	f
wikiLinkEnabled	hg/lib/wikiLink.c	/^boolean wikiLinkEnabled()$/;"	f
wikiLinkHost	hg/lib/wikiLink.c	/^char *wikiLinkHost()$/;"	f
wikiLinkLoggedInCookie	hg/lib/wikiLink.c	/^static char *wikiLinkLoggedInCookie()$/;"	f	file:
wikiLinkUserLoginUrl	hg/lib/wikiLink.c	/^char *wikiLinkUserLoginUrl(int hgsid)$/;"	f
wikiLinkUserLogoutUrl	hg/lib/wikiLink.c	/^char *wikiLinkUserLogoutUrl(int hgsid)$/;"	f
wikiLinkUserName	hg/lib/wikiLink.c	/^char *wikiLinkUserName()$/;"	f
wikiLinkUserNameCookie	hg/lib/wikiLink.c	/^static char *wikiLinkUserNameCookie()$/;"	f	file:
wikiTrack	hg/inc/wikiTrack.h	/^struct wikiTrack$/;"	s
wikiTrackCommaIn	hg/lib/wikiTrack.c	/^struct wikiTrack *wikiTrackCommaIn(char **pS, struct wikiTrack *ret)$/;"	f
wikiTrackCommaOut	hg/inc/wikiTrack.h	105;"	d
wikiTrackEnabled	hg/lib/wikiTrack.c	/^boolean wikiTrackEnabled(char *database, char **wikiUserName)$/;"	f
wikiTrackFree	hg/lib/wikiTrack.c	/^void wikiTrackFree(struct wikiTrack **pEl)$/;"	f
wikiTrackFreeList	hg/lib/wikiTrack.c	/^void wikiTrackFreeList(struct wikiTrack **pList)$/;"	f
wikiTrackGetCreateSql	hg/lib/wikiTrack.c	/^char *wikiTrackGetCreateSql(char *tableName)$/;"	f
wikiTrackLoad	hg/lib/wikiTrack.c	/^struct wikiTrack *wikiTrackLoad(char **row)$/;"	f
wikiTrackLoadAll	hg/lib/wikiTrack.c	/^struct wikiTrack *wikiTrackLoadAll(char *fileName) $/;"	f
wikiTrackLoadAllByChar	hg/lib/wikiTrack.c	/^struct wikiTrack *wikiTrackLoadAllByChar(char *fileName, char chopper) $/;"	f
wikiTrackLoadAllByTab	hg/inc/wikiTrack.h	58;"	d
wikiTrackLoadByQuery	hg/lib/wikiTrack.c	/^struct wikiTrack *wikiTrackLoadByQuery(struct sqlConnection *conn, char *query)$/;"	f
wikiTrackOutput	hg/lib/wikiTrack.c	/^void wikiTrackOutput(struct wikiTrack *el, FILE *f, char sep, char lastSep) $/;"	f
wikiTrackSaveToDb	hg/lib/wikiTrack.c	/^void wikiTrackSaveToDb(struct sqlConnection *conn, struct wikiTrack *el, char *tableName, int updateSize)$/;"	f
wikiTrackSaveToDbEscaped	hg/lib/wikiTrack.c	/^void wikiTrackSaveToDbEscaped(struct sqlConnection *conn, struct wikiTrack *el, char *tableName, int updateSize)$/;"	f
wikiTrackStaticLoad	hg/lib/wikiTrack.c	/^void wikiTrackStaticLoad(char **row, struct wikiTrack *ret)$/;"	f
wikiTrackTabOut	hg/inc/wikiTrack.h	102;"	d
wikiUrl	hg/lib/wikiTrack.c	/^char *wikiUrl(struct wikiTrack *item)$/;"	f
wildMatch	lib/wildcmp.c	/^boolean wildMatch(const char *wildCard, const char *string)$/;"	f
winEnd	hg/inc/wiggle.h	/^    int winEnd;			\/*	for fetches between winStart, winEnd *\/$/;"	m	struct:wiggleDataStream
winEnd	hg/inc/wiggle.h	/^    unsigned winEnd;		\/*	will be the length of data	*\/$/;"	m	struct:wiggleArray
winEnd	inc/spaceSaver.h	/^    int winStart,winEnd;      \/* Start and end of area we're modeling. *\/$/;"	m	struct:spaceSaver
winStart	hg/inc/wiggle.h	/^    int winStart;		\/*	for fetches between winStart, winEnd *\/$/;"	m	struct:wiggleDataStream
winStart	hg/inc/wiggle.h	/^    unsigned winStart;		\/*	winEnd - winStart	*\/$/;"	m	struct:wiggleArray
winStart	inc/spaceSaver.h	/^    int winStart,winEnd;      \/* Start and end of area we're modeling. *\/$/;"	m	struct:spaceSaver
wirhChr	hg/inc/stsInfo.h	/^    char *wirhChr;	\/* Chromosome in WI RH map *\/$/;"	m	struct:stsInfo
wirhChr	hg/inc/stsInfo2.h	/^    char *wirhChr;	\/* Chromosome in WI RH map *\/$/;"	m	struct:stsInfo2
wirhLOD	hg/inc/stsInfo.h	/^    float wirhLOD;	\/* LOD score in WI RH map *\/$/;"	m	struct:stsInfo
wirhLOD	hg/inc/stsInfo2.h	/^    float wirhLOD;	\/* LOD score in WI RH map *\/$/;"	m	struct:stsInfo2
wirhName	hg/inc/stsInfo.h	/^    char *wirhName;	\/* Name in WI RH map *\/$/;"	m	struct:stsInfo
wirhName	hg/inc/stsInfo2.h	/^    char *wirhName;	\/* Name in WI RH map *\/$/;"	m	struct:stsInfo2
wirhPos	hg/inc/stsInfo.h	/^    float wirhPos;	\/* Position in WI RH map *\/$/;"	m	struct:stsInfo
wirhPos	hg/inc/stsInfo2.h	/^    float wirhPos;	\/* Position in WI RH map *\/$/;"	m	struct:stsInfo2
withFrom	hg/inc/goa.h	/^    char *withFrom;	\/* (Optional) Database support for evidence I think *\/$/;"	m	struct:goa
wiyacChr	hg/inc/stsInfo.h	/^    char *wiyacChr;	\/* Chromosome in WI YAC map *\/$/;"	m	struct:stsInfo
wiyacChr	hg/inc/stsInfo2.h	/^    char *wiyacChr;	\/* Chromosome in WI YAC map *\/$/;"	m	struct:stsInfo2
wiyacLOD	hg/inc/stsInfo.h	/^    float wiyacLOD;	\/* LOD score in WI YAC map *\/$/;"	m	struct:stsInfo
wiyacLOD	hg/inc/stsInfo2.h	/^    float wiyacLOD;	\/* LOD score in WI YAC map *\/$/;"	m	struct:stsInfo2
wiyacName	hg/inc/stsInfo.h	/^    char *wiyacName;	\/* Name in WI YAC map *\/$/;"	m	struct:stsInfo
wiyacName	hg/inc/stsInfo2.h	/^    char *wiyacName;	\/* Name in WI YAC map *\/$/;"	m	struct:stsInfo2
wiyacPos	hg/inc/stsInfo.h	/^    float wiyacPos;	\/* Position in WI YAC map *\/$/;"	m	struct:stsInfo
wiyacPos	hg/inc/stsInfo2.h	/^    float wiyacPos;	\/* Position in WI YAC map *\/$/;"	m	struct:stsInfo2
wlo	lib/gifcodes.h	/^	unsigned char wlo,whi;$/;"	m	struct:gif_header
wlo	lib/gifcodes.h	/^	unsigned char wlo,whi;$/;"	m	struct:gif_image
wobbleMask	jkOwnLib/crudeali.c	20;"	d	file:
word	lib/trix.c	/^    char *word;			\/* Word name. *\/$/;"	m	struct:trixWordResult	file:
wordHitHash	inc/trix.h	/^    struct hash *wordHitHash;	\/* Hash of word hitsLists, so search on "the the the" works fast. *\/$/;"	m	struct:trix	typeref:struct:trix::hash
wordIx	lib/trix.c	/^    int wordIx;			\/* Which word this is part of. *\/$/;"	m	struct:trixHitPos	file:
wordLen	inc/seqOut.h	/^    int wordLen;	\/* Number of characters between spaces (often 10) *\/$/;"	m	struct:cfm
wordPos	inc/trix.h	/^    int wordPos;		\/* Position of word in doc more or less. *\/$/;"	m	struct:trixSearchResult
wordsFromRow	lib/annoFormatTab.c	/^static char **wordsFromRow(struct annoRow *row, struct annoStreamer *source,$/;"	f	file:
wordsFromWigRowAvg	lib/annoFormatTab.c	/^static char **wordsFromWigRowAvg(struct annoRow *row)$/;"	f	file:
wordsFromWigRowVals	lib/annoFormatTab.c	/^static char **wordsFromWigRowVals(struct annoRow *row)$/;"	f	file:
wormCacheSomeGdf	lib/wormdna.c	/^static void wormCacheSomeGdf(struct wormGdfCache *cache)$/;"	f	file:
wormCdaAlisInRange	lib/wormdna.c	/^struct cdaAli *wormCdaAlisInRange(char *chromId, int start, int end)$/;"	f
wormCdnaCache	lib/wormdna.c	/^static void wormCdnaCache()$/;"	f	file:
wormCdnaDir	lib/wormdna.c	/^char *wormCdnaDir()$/;"	f
wormCdnaInfo	inc/wormdna.h	/^struct wormCdnaInfo $/;"	s
wormCdnaInfo	lib/wormdna.c	/^boolean wormCdnaInfo(char *name, struct wormCdnaInfo *retInfo)$/;"	f
wormCdnaIterator	inc/wormdna.h	/^struct wormCdnaIterator$/;"	s
wormCdnaSeq	lib/wormdna.c	/^boolean wormCdnaSeq(char *name, struct dnaSeq **retDna, struct wormCdnaInfo *retInfo)$/;"	f
wormCdnaUncache	lib/wormdna.c	/^void wormCdnaUncache()$/;"	f
wormCdnasInRange	lib/wormdna.c	/^struct wormFeature *wormCdnasInRange(char *chromId, int start, int end)$/;"	f
wormChromDir	lib/wormdna.c	/^char *wormChromDir()$/;"	f
wormChromForIx	lib/wormdna.c	/^char *wormChromForIx(int ix)$/;"	f
wormChromIx	lib/wormdna.c	/^int wormChromIx(char *name)$/;"	f
wormChromNames	lib/wormdna.c	/^void wormChromNames(char ***retNames, int *retNameCount)$/;"	f
wormChromPart	lib/wormdna.c	/^DNA *wormChromPart(char *chromId, int start, int size)$/;"	f
wormChromPartExonsUpper	lib/wormdna.c	/^DNA *wormChromPartExonsUpper(char *chromId, int start, int size)$/;"	f
wormChromSize	lib/wormdna.c	/^int wormChromSize(char *chrom)$/;"	f
wormClipRangeToChrom	lib/wormdna.c	/^void wormClipRangeToChrom(char *chrom, int *pStart, int *pEnd)$/;"	f
wormCosmidsInRange	lib/wormdna.c	/^struct wormFeature *wormCosmidsInRange(char *chromId, int start, int end)$/;"	f
wormDnaMatchScores	jkOwnLib/crudeali.c	/^static int wormDnaMatchScores[256][256];$/;"	v	file:
wormFaCommentIntoInfo	lib/wormdna.c	/^void wormFaCommentIntoInfo(char *faComment, struct wormCdnaInfo *retInfo)$/;"	f
wormFeature	inc/wormdna.h	/^struct wormFeature$/;"	s
wormFeaturesDir	lib/wormdna.c	/^char *wormFeaturesDir()$/;"	f
wormFixupOrfName	lib/wormdna.c	/^boolean wormFixupOrfName(char *name)$/;"	f
wormFreeCdnaInfo	lib/wormdna.c	/^void wormFreeCdnaInfo(struct wormCdnaInfo *ci)$/;"	f
wormFreeNt4Genome	lib/wormdna.c	/^void wormFreeNt4Genome(struct nt4Seq ***pNt4Seq)$/;"	f
wormGdfCache	inc/wormdna.h	/^struct wormGdfCache$/;"	s
wormGdfGenesInRange	lib/wormdna.c	/^struct gdfGene *wormGdfGenesInRange(char *chrom, int start, int end, $/;"	f
wormGeneFirstOrfName	lib/wormdna.c	/^char *wormGeneFirstOrfName(char *geneName)$/;"	f
wormGeneForOrf	lib/wormdna.c	/^boolean wormGeneForOrf(char *orfName, char *geneNameBuf, int bufSize)$/;"	f
wormGeneRange	lib/wormdna.c	/^boolean wormGeneRange(char *name, char **retChrom, char *retStrand, int *retStart, int *retEnd)$/;"	f
wormGeneToOrfNames	lib/wormdna.c	/^struct slName *wormGeneToOrfNames(char *name)$/;"	f
wormGenesInRange	lib/wormdna.c	/^struct wormFeature *wormGenesInRange(char *chromId, int start, int end)$/;"	f
wormGenieDir	lib/wormdna.c	/^char *wormGenieDir()$/;"	f
wormGenieGdfCache	lib/wormdna.c	/^struct wormGdfCache wormGenieGdfCache = {&genieDir,NULL,NULL};$/;"	v	typeref:struct:wormGdfCache
wormGetGdfGene	lib/wormdna.c	/^struct gdfGene *wormGetGdfGene(char *name)$/;"	f
wormGetGdfGeneList	lib/wormdna.c	/^struct gdfGene *wormGetGdfGeneList(char *baseName, int baseNameSize)$/;"	f
wormGetNamelessClusterDna	lib/wormdna.c	/^DNA *wormGetNamelessClusterDna(char *name)$/;"	f
wormGetSomeGdfGene	lib/wormdna.c	/^struct gdfGene *wormGetSomeGdfGene(char *name, struct wormGdfCache *cache)$/;"	f
wormGetSomeGdfGeneList	lib/wormdna.c	/^struct gdfGene *wormGetSomeGdfGeneList(char *baseName, int baseNameSize, struct wormGdfCache *cache)$/;"	f
wormInfoForGene	lib/wormdna.c	/^boolean wormInfoForGene(char *orfName, struct wormCdnaInfo *retInfo)$/;"	f
wormIsAltSplicedName	lib/wormdna.c	/^boolean wormIsAltSplicedName(char *name)$/;"	f
wormIsChromRange	lib/wormdna.c	/^boolean wormIsChromRange(char *in)$/;"	f
wormIsGeneName	lib/wormdna.c	/^boolean wormIsGeneName(char *name)$/;"	f
wormIsNamelessCluster	lib/wormdna.c	/^boolean wormIsNamelessCluster(char *name)$/;"	f
wormIsOrfName	lib/wormdna.c	/^boolean wormIsOrfName(char *in)$/;"	f
wormLoadNt4Genome	lib/wormdna.c	/^void wormLoadNt4Genome(struct nt4Seq ***retNt4Seq, int *retNt4Count)$/;"	f
wormOfficialChromName	lib/wormdna.c	/^char *wormOfficialChromName(char *name)$/;"	f
wormOpenGoodAli	lib/wormdna.c	/^FILE *wormOpenGoodAli()$/;"	f
wormParseChromRange	lib/wormdna.c	/^boolean wormParseChromRange(char *in, char **retChromId, int *retStart, int *retEnd)$/;"	f
wormSangerDir	lib/wormdna.c	/^char *wormSangerDir()$/;"	f
wormSangerGdfCache	lib/wormdna.c	/^struct wormGdfCache wormSangerGdfCache = {&sangerDir,NULL,NULL};$/;"	v	typeref:struct:wormGdfCache
wormSearchAllCdna	lib/wormdna.c	/^boolean wormSearchAllCdna(struct wormCdnaIterator **retSi)$/;"	f
wormSomeGenesInRange	lib/wormdna.c	/^struct wormFeature *wormSomeGenesInRange(char *chromId, int start, int end, char *gdfDir)$/;"	f
wormUncacheGdf	lib/wormdna.c	/^void wormUncacheGdf()$/;"	f
wormUncacheSomeGdf	lib/wormdna.c	/^void wormUncacheSomeGdf(struct wormGdfCache *cache)$/;"	f
wormXenoDir	lib/wormdna.c	/^char *wormXenoDir()$/;"	f
wrapWhiteFont	hg/lib/hui.c	/^char *wrapWhiteFont(char *s)$/;"	f
writeAnn	lib/gff3.c	/^static void writeAnn(struct gff3Ann *g3a, FILE *fh)$/;"	f	file:
writeAttr	lib/gff3.c	/^static void writeAttr(struct gff3Attr *attr, FILE *fh)$/;"	f	file:
writeAttributeOntologies	lib/gff3.c	/^static void writeAttributeOntologies(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeAttrs	lib/gff3.c	/^static void writeAttrs(struct gff3Ann *g3a, FILE *fh)$/;"	f	file:
writeCacheLog	hg/lib/baseMaskCommon.c	/^static void writeCacheLog(char *file, char *db, char *table, time_t newCacheTime, time_t tableTime, time_t oldCacheTime)$/;"	f	file:
writeContig	jkOwnLib/xenbig.c	/^static void writeContig(struct contig *contig, FILE *out, $/;"	f	file:
writeEscaped	lib/gff3.c	/^static void writeEscaped(char *str, FILE *fh)$/;"	f	file:
writeFastas	lib/gff3.c	/^static void writeFastas(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeFeatureOntologies	lib/gff3.c	/^static void writeFeatureOntologies(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeFields	lib/gff3.c	/^static void writeFields(struct gff3Ann *g3a, FILE *fh)$/;"	f	file:
writeGenomeBuild	lib/gff3.c	/^static void writeGenomeBuild(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeGulp	lib/obscure.c	/^void writeGulp(char *file, char *buf, int size)$/;"	f
writeIndexLevel	lib/bPlusTree.c	/^static bits32 writeIndexLevel(bits16 blockSize, $/;"	f	file:
writeIndexLevel	lib/cirTree.c	/^static void writeIndexLevel(int blockSize, int childNodeSize, $/;"	f	file:
writeLeafLevel	lib/bPlusTree.c	/^static void writeLeafLevel(bits16 blockSize, void *itemArray, int itemSize, int itemCount, $/;"	f	file:
writeLeaves	lib/cirTree.c	/^static void writeLeaves(int itemsPerSlot, int lNodeSize, struct rTree *tree, int leafLevel, FILE *f)$/;"	f	file:
writeMeta	lib/gff3.c	/^static void writeMeta(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeMode	inc/memgfx.h	/^    unsigned int writeMode;$/;"	m	struct:memGfx
writeMode	inc/pscmGfx.h	/^    int writeMode;        \/* current write mode *\/$/;"	m	struct:pscmGfx
writeOne	inc/common.h	1058;"	d
writeOneFd	inc/common.h	1088;"	d
writeOutSpecies	hg/lib/mafGene.c	/^static void writeOutSpecies(FILE *f, char *dbName, struct speciesInfo *si, $/;"	f	file:
writeParaFetchStatus	lib/net.c	/^void writeParaFetchStatus(char *origPath, struct parallelConn *pcList, char *url, off_t fileSize, char *dateString, boolean isFinal)$/;"	f
writeSeqWithBreaks	lib/dnautil.c	/^void writeSeqWithBreaks(FILE *f, char *letters, int letterCount, int maxPerLine)$/;"	f
writeSequenceRegions	lib/gff3.c	/^static void writeSequenceRegions(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeSlNameMetas	lib/gff3.c	/^static void writeSlNameMetas(char *metaName, struct slName *metas, FILE *fh)$/;"	f	file:
writeSourceOntologies	lib/gff3.c	/^static void writeSourceOntologies(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeSpecies	lib/gff3.c	/^static void writeSpecies(struct gff3File *g3f, FILE *fh)$/;"	f	file:
writeString	lib/common.c	/^void writeString(FILE *f, char *s)$/;"	f
writeTreeToOpenFile	lib/cirTree.c	/^static void writeTreeToOpenFile(struct rTree *tree, int blockSize, int levelCount, FILE *f)$/;"	f	file:
write_code	lib/gifcomp.c	/^static void write_code(short code)$/;"	f	file:
wss	lib/portimpl.c	/^static struct webServerSpecific *wss = NULL;$/;"	v	typeref:struct:webServerSpecific	file:
wssBrcMcw	lib/servBrcMcw.c	/^struct webServerSpecific wssBrcMcw =$/;"	v	typeref:struct:webServerSpecific
wssCommandLine	lib/servcl.c	/^struct webServerSpecific wssCommandLine =$/;"	v	typeref:struct:webServerSpecific
wssDefault	lib/servcis.c	/^struct webServerSpecific wssDefault =$/;"	v	typeref:struct:webServerSpecific
wssLinux	lib/servCrunx.c	/^struct webServerSpecific wssLinux =$/;"	v	typeref:struct:webServerSpecific
wssMicrosoftII	lib/servmsII.c	/^struct webServerSpecific wssMicrosoftII =$/;"	v	typeref:struct:webServerSpecific
wssMicrosoftPWS	lib/servpws.c	/^struct webServerSpecific wssMicrosoftPWS =$/;"	v	typeref:struct:webServerSpecific
wuBlastOut	lib/blastOut.c	/^static void wuBlastOut(struct axtBundle *abList, int queryIx, boolean isProt, $/;"	f	file:
x	hg/inc/affyPairs.h	/^    unsigned x;	\/* X, the x-coordinate of the perfect-complement oligo on the chip. *\/$/;"	m	struct:affyPairs
x	hg/inc/genoLay.h	/^     int x,y;		\/* Upper left corner pixel coordinates*\/$/;"	m	struct:genoLayChrom
x	inc/gfxPoly.h	/^    int x, y;		\/* Position *\/$/;"	m	struct:gfxPoint
x	inc/psPoly.h	/^    double x, y;		\/* Position *\/$/;"	m	struct:psPoint
x	inc/rql.h	/^    double x;$/;"	m	union:rqlVal
xAli	inc/xAli.h	/^struct xAli$/;"	s
xAliCommaIn	lib/xAli.c	/^struct xAli *xAliCommaIn(char **pS, struct xAli *ret)$/;"	f
xAliCommaOut	inc/xAli.h	63;"	d
xAliFree	lib/xAli.c	/^void xAliFree(struct xAli **pEl)$/;"	f
xAliFreeList	lib/xAli.c	/^void xAliFreeList(struct xAli **pList)$/;"	f
xAliLoad	lib/xAli.c	/^struct xAli *xAliLoad(char **row)$/;"	f
xAliLoadAll	lib/xAli.c	/^struct xAli *xAliLoadAll(char *fileName) $/;"	f
xAliNext	lib/xAli.c	/^struct xAli *xAliNext(struct lineFile *lf)$/;"	f
xAliOutput	lib/xAli.c	/^void xAliOutput(struct xAli *el, FILE *f, char sep, char lastSep) $/;"	f
xAliTabOut	inc/xAli.h	60;"	d
xCoord	hg/inc/affyTransLifted.h	/^    int xCoord;	\/* x-coordinate (column) of PM feature on chip *\/$/;"	m	struct:affyTransLifted
xOff	inc/psGfx.h	/^    double xOff, yOff;            \/* Offset from pixels to points. *\/$/;"	m	struct:psGfx
xOff	lib/gemfont.h	/^WORD    xOff;		\/* X offset to add. *\/$/;"	m	struct:font_hdr
xScale	inc/psGfx.h	/^    double xScale, yScale;        \/* Conversion from pixels to points. *\/$/;"	m	struct:psGfx
xStitch	jkOwnLib/xenbig.c	/^static void xStitch(char *inName, FILE *out, int stitchMinScore, boolean compactOutput, $/;"	f	file:
xToY	lib/bPlusTree.c	/^static int xToY(int x, unsigned y)$/;"	f	file:
xaAli	inc/xa.h	/^struct xaAli$/;"	s
xaAliCmpTarget	lib/xa.c	/^int xaAliCmpTarget(const void *va, const void *vb)$/;"	f
xaAliFree	lib/xa.c	/^void xaAliFree(struct xaAli *xa)$/;"	f
xaAliFreeList	lib/xa.c	/^void xaAliFreeList(struct xaAli **pXa)$/;"	f
xaAlignSuffix	lib/xa.c	/^char *xaAlignSuffix()$/;"	f
xaChromIxSuffix	lib/xa.c	/^char *xaChromIxSuffix()$/;"	f
xaIxOpenVerify	lib/xa.c	/^FILE *xaIxOpenVerify(char *fileName)$/;"	f
xaOpenVerify	lib/xa.c	/^FILE *xaOpenVerify(char *fileName)$/;"	f
xaRdRange	lib/xa.c	/^struct xaAli *xaRdRange(FILE *ix, FILE *data, $/;"	f
xaReadNext	lib/xa.c	/^struct xaAli *xaReadNext(FILE *f, boolean condensed)$/;"	f
xaReadRange	lib/xa.c	/^struct xaAli *xaReadRange(char *rangeIndexFileName, char *dataFileName, $/;"	f
xaoSig	inc/sig.h	22;"	d
xap	inc/xap.h	/^struct xap$/;"	s
xapEndTag	lib/xap.c	/^static void xapEndTag(void *userData, char *name, char *text)$/;"	f	file:
xapError	lib/xap.c	/^void xapError(struct xap *xap, char *format, ...)$/;"	f
xapFree	lib/xap.c	/^void xapFree(struct xap **pXp)$/;"	f
xapIndent	lib/xap.c	/^void xapIndent(int count, FILE *f)$/;"	f
xapNew	lib/xap.c	/^struct xap *xapNew(void *(*startHandler)(struct xap *xap, char *name, char **atts),$/;"	f
xapNext	lib/xap.c	/^void *xapNext(struct xap *xap, char *tag)$/;"	f
xapOpen	lib/xap.c	/^struct xap *xapOpen(char *fileName, $/;"	f
xapParseAny	lib/xap.c	/^void xapParseAny(char *fileName, char *type, $/;"	f
xapParseFile	lib/xap.c	/^void xapParseFile(struct xap *xap, char *fileName)$/;"	f
xapRead	lib/xap.c	/^static int xapRead(void *userData, char *buf, int bufSize)$/;"	f	file:
xapSkip	lib/xap.c	/^void xapSkip(struct xap *xap)$/;"	f
xapStack	inc/xap.h	/^struct xapStack$/;"	s
xapStartTag	lib/xap.c	/^static void xapStartTag(void *userData, char *name, char **atts)$/;"	f	file:
xapText	lib/xap.c	/^static void xapText(void *userData, char *s, int len)$/;"	f	file:
xdda_ebuf	lib/mgPolygon.c	/^static int *xdda_ebuf(int *ebuf, int x1, int y1, int x2, int y2)$/;"	f	file:
xenAlignBig	jkOwnLib/xenbig.c	/^void xenAlignBig(DNA *query, int qSize, DNA *target, int tSize, FILE *f, boolean forHtml)$/;"	f
xenAlignSmall	jkOwnLib/xensmall.c	/^int xenAlignSmall(DNA *query, int querySize, DNA *target, int targetSize, FILE *f,$/;"	f
xenAlignWorm	jkOwnLib/xenbig.c	/^void xenAlignWorm(DNA *query, int qSize, FILE *f, boolean forHtml)$/;"	f
xenShowAli	lib/xenshow.c	/^void xenShowAli(char *qSym, char *tSym, char *hSym, int symCount, FILE *f,$/;"	f
xenStitch	jkOwnLib/xenbig.c	/^void xenStitch(char *inName, FILE *out, int stitchMinScore, boolean compactOutput)$/;"	f
xenStitcher	jkOwnLib/xenbig.c	/^void xenStitcher(char *inName, FILE *out, int stitchMinScore, boolean compactOutput)$/;"	f
xenoDir	lib/wormdna.c	/^static char *xenoDir = NULL;$/;"	v	file:
xenoEnd	hg/inc/ensPhusionBlast.h	/^    unsigned xenoEnd;	\/* End position in $Xeno chromosome *\/$/;"	m	struct:ensPhusionBlast
xenoStart	hg/inc/ensPhusionBlast.h	/^    unsigned xenoStart;	\/* Start position in $Xeno chromosome *\/$/;"	m	struct:ensPhusionBlast
xerr	lib/https.c	/^static void xerr(char *msg)$/;"	f	file:
xerrno	lib/https.c	/^static void xerrno(char *msg)$/;"	f	file:
xhi	lib/gifcodes.h	/^	unsigned char xlo,xhi;$/;"	m	struct:gif_image
xlo	lib/gifcodes.h	/^	unsigned char xlo,xhi;$/;"	m	struct:gif_image
xmax	hg/inc/pbStamp.h	/^    float xmax;	\/* x maximum *\/$/;"	m	struct:pbStamp
xmin	hg/inc/pbStamp.h	/^    float xmin;	\/* x minimum *\/$/;"	m	struct:pbStamp
xmlBlastOut	lib/blastOut.c	/^static void xmlBlastOut(struct axtBundle *abList, int queryIx, boolean isProt, $/;"	f	file:
xmlEscapeBytesToFile	lib/xmlEscape.c	/^void xmlEscapeBytesToFile(unsigned char *buffer, int len, FILE *f)$/;"	f
xmlEscapeStringToFile	lib/xmlEscape.c	/^void xmlEscapeStringToFile(char *s, FILE *f)$/;"	f
xmlEscapeSymHash	lib/xmlEscape.c	/^struct hash *xmlEscapeSymHash()$/;"	f
xor_pt	lib/mgPolygon.c	/^static void xor_pt(int bpr, int x, int y)$/;"	f	file:
xp	inc/xap.h	/^   struct xp *xp;				        \/* Pointer to lower level parser. *\/$/;"	m	struct:xap	typeref:struct:xap::xp
xp	inc/xp.h	/^struct xp$/;"	s
xpEatComment	lib/xp.c	/^static void xpEatComment(struct xp *xp, char commentC)$/;"	f	file:
xpError	lib/xp.c	/^void xpError(struct xp *xp, char *format, ...)$/;"	f
xpFileName	lib/xp.c	/^char *xpFileName(struct xp *xp)$/;"	f
xpForceMatch	lib/xp.c	/^void xpForceMatch(struct xp *xp, char *matchString)$/;"	f
xpFree	lib/xp.c	/^void xpFree(struct xp **pXp)$/;"	f
xpGetChar	lib/xp.c	29;"	d	file:
xpLineIx	lib/xp.c	/^int xpLineIx(struct xp *xp)$/;"	f
xpLookup	lib/xp.c	/^static void xpLookup(struct xp *xp, struct dyString *temp, struct dyString *text)$/;"	f	file:
xpNew	lib/xp.c	/^struct xp *xpNew(void *userData, $/;"	f
xpNextBuf	lib/xp.c	/^char xpNextBuf(struct xp *xp)$/;"	f
xpParse	lib/xp.c	/^void xpParse(struct xp *xp)$/;"	f
xpParseEndTag	lib/xp.c	/^void xpParseEndTag(struct xp *xp, char *tagName)$/;"	f
xpParseNext	lib/xp.c	/^boolean xpParseNext(struct xp *xp, char *tag)$/;"	f
xpParseStartTag	lib/xp.c	/^void xpParseStartTag(struct xp *xp, $/;"	f
xpReadFromFile	lib/xp.c	/^int xpReadFromFile(void *userData, char *buf, int bufSize)$/;"	f
xpStack	inc/xp.h	/^struct xpStack$/;"	s
xpTextUntil	lib/xp.c	/^void xpTextUntil(struct xp *xp, char *endPattern)$/;"	f
xpUnexpectedEof	lib/xp.c	/^static void xpUnexpectedEof(struct xp *xp)$/;"	f	file:
xpUngetChar	lib/xp.c	33;"	d	file:
xrefQuery	hg/inc/hgFindSpec.h	/^    char *xrefQuery;	\/* sprintf format string for SQL query on a given (xref) table and value. *\/$/;"	m	struct:hgFindSpec
xrefQueryFormatRegex	hg/lib/hgFindSpecCustom.c	/^static char *xrefQueryFormatRegex =$/;"	v	file:
xrefTable	hg/inc/hgFindSpec.h	/^    char *xrefTable;	\/* If search is xref, perform xrefQuery on search term, then query with that result. *\/$/;"	m	struct:hgFindSpec
y	hg/inc/affyPairs.h	/^    unsigned y;	\/* Y, the y-coordinate of the perfect-complement oligo on the chip. *\/$/;"	m	struct:affyPairs
y	hg/inc/genoLay.h	/^     int x,y;		\/* Upper left corner pixel coordinates*\/$/;"	m	struct:genoLayChrom
y	inc/gfxPoly.h	/^    int x, y;		\/* Position *\/$/;"	m	struct:gfxPoint
y	inc/psPoly.h	/^    double x, y;		\/* Position *\/$/;"	m	struct:psPoint
yCoord	hg/inc/affyTransLifted.h	/^    int yCoord;	\/* y-coordinate (row) of PM feature on chip *\/$/;"	m	struct:affyTransLifted
yOff	inc/psGfx.h	/^    double xOff, yOff;            \/* Offset from pixels to points. *\/$/;"	m	struct:psGfx
yOff	lib/gemfont.h	/^WORD    yOff;		\/* Y offset to add. *\/$/;"	m	struct:font_hdr
yScale	inc/psGfx.h	/^    double xScale, yScale;        \/* Conversion from pixels to points. *\/$/;"	m	struct:psGfx
y_xor_line	lib/mgPolygon.c	/^static void y_xor_line(int bpr, int x1, int y1, int x2, int y2)$/;"	f	file:
yaleGencodeAssoc	hg/inc/yaleGencodeAssoc.h	/^struct yaleGencodeAssoc$/;"	s
yaleGencodeAssocCommaIn	hg/lib/yaleGencodeAssoc.c	/^struct yaleGencodeAssoc *yaleGencodeAssocCommaIn(char **pS, struct yaleGencodeAssoc *ret)$/;"	f
yaleGencodeAssocCommaOut	hg/inc/yaleGencodeAssoc.h	57;"	d
yaleGencodeAssocFree	hg/lib/yaleGencodeAssoc.c	/^void yaleGencodeAssocFree(struct yaleGencodeAssoc **pEl)$/;"	f
yaleGencodeAssocFreeList	hg/lib/yaleGencodeAssoc.c	/^void yaleGencodeAssocFreeList(struct yaleGencodeAssoc **pList)$/;"	f
yaleGencodeAssocLoad	hg/lib/yaleGencodeAssoc.c	/^struct yaleGencodeAssoc *yaleGencodeAssocLoad(char **row)$/;"	f
yaleGencodeAssocLoadAll	hg/lib/yaleGencodeAssoc.c	/^struct yaleGencodeAssoc *yaleGencodeAssocLoadAll(char *fileName) $/;"	f
yaleGencodeAssocLoadAllByChar	hg/lib/yaleGencodeAssoc.c	/^struct yaleGencodeAssoc *yaleGencodeAssocLoadAllByChar(char *fileName, char chopper) $/;"	f
yaleGencodeAssocLoadAllByTab	hg/inc/yaleGencodeAssoc.h	35;"	d
yaleGencodeAssocOutput	hg/lib/yaleGencodeAssoc.c	/^void yaleGencodeAssocOutput(struct yaleGencodeAssoc *el, FILE *f, char sep, char lastSep) $/;"	f
yaleGencodeAssocStaticLoad	hg/lib/yaleGencodeAssoc.c	/^void yaleGencodeAssocStaticLoad(char **row, struct yaleGencodeAssoc *ret)$/;"	f
yaleGencodeAssocTabOut	hg/inc/yaleGencodeAssoc.h	54;"	d
yaleId	hg/inc/yaleGencodeAssoc.h	/^    char *yaleId;	\/* Yale id *\/$/;"	m	struct:yaleGencodeAssoc
yellowBlue	hg/inc/microarray.h	/^    yellowBlue = 2,$/;"	e	enum:expColorType
yhi	lib/gifcodes.h	/^	unsigned char ylo,yhi;$/;"	m	struct:gif_image
ylo	lib/gifcodes.h	/^	unsigned char ylo,yhi;$/;"	m	struct:gif_image
ymax	hg/inc/pbStamp.h	/^    float ymax;	\/* y maximum *\/$/;"	m	struct:pbStamp
ymin	hg/inc/pbStamp.h	/^    float ymin;	\/* y minimum *\/$/;"	m	struct:pbStamp
zCompBufSize	lib/zlibFace.c	/^size_t zCompBufSize(size_t uncompressedSize)$/;"	f
zCompress	lib/zlibFace.c	/^size_t zCompress($/;"	f
zScore	hg/inc/tfbsConsSites.h	/^    float zScore;	\/* zScore *\/$/;"	m	struct:tfbsConsSites
zSelfTest	lib/zlibFace.c	/^void zSelfTest(int count)$/;"	f
zTerm	inc/linefile.h	/^    bool zTerm;			\/* Replace '\\n' with zero? *\/$/;"	m	struct:lineFile
zUncompress	lib/zlibFace.c	/^size_t zUncompress($/;"	f
zdobnovSynt	hg/inc/zdobnovSynt.h	/^struct zdobnovSynt$/;"	s
zdobnovSyntCommaIn	hg/lib/zdobnovSynt.c	/^struct zdobnovSynt *zdobnovSyntCommaIn(char **pS, struct zdobnovSynt *ret)$/;"	f
zdobnovSyntCommaOut	hg/inc/zdobnovSynt.h	63;"	d
zdobnovSyntFree	hg/lib/zdobnovSynt.c	/^void zdobnovSyntFree(struct zdobnovSynt **pEl)$/;"	f
zdobnovSyntFreeList	hg/lib/zdobnovSynt.c	/^void zdobnovSyntFreeList(struct zdobnovSynt **pList)$/;"	f
zdobnovSyntLoad	hg/lib/zdobnovSynt.c	/^struct zdobnovSynt *zdobnovSyntLoad(char **row)$/;"	f
zdobnovSyntLoadAll	hg/lib/zdobnovSynt.c	/^struct zdobnovSynt *zdobnovSyntLoadAll(char *fileName) $/;"	f
zdobnovSyntLoadAllByChar	hg/lib/zdobnovSynt.c	/^struct zdobnovSynt *zdobnovSyntLoadAllByChar(char *fileName, char chopper) $/;"	f
zdobnovSyntLoadAllByTab	hg/inc/zdobnovSynt.h	41;"	d
zdobnovSyntOutput	hg/lib/zdobnovSynt.c	/^void zdobnovSyntOutput(struct zdobnovSynt *el, FILE *f, char sep, char lastSep) $/;"	f
zdobnovSyntTabOut	hg/inc/zdobnovSynt.h	60;"	d
zeroBytes	inc/common.h	/^INLINE void zeroBytes(void *vpt, int count)$/;"	f
zfinId	hg/inc/ensXRefZfish.h	/^    char *zfinId;	\/* ZFIN ID *\/$/;"	m	struct:ensXRefZfish
zfinId	hg/inc/rhMapInfo.h	/^    char *zfinId;	\/* ZFIN ID for the marker *\/$/;"	m	struct:rhMapInfo
zfinId	hg/inc/rhMapZfishInfo.h	/^    char *zfinId;	\/* ZFIN ID for the marker *\/$/;"	m	struct:rhMapZfishInfo
zfinId	hg/inc/vegaInfoZfish.h	/^    char *zfinId;	\/* ZFIN ID *\/$/;"	m	struct:vegaInfoZfish
zfinSymbol	hg/inc/vegaInfoZfish.h	/^    char *zfinSymbol;	\/* ZFIN gene symbol *\/$/;"	m	struct:vegaInfoZfish
zlibErrorMessage	lib/zlibFace.c	/^static char *zlibErrorMessage(int err)$/;"	f	file:
zoomLevels	inc/bbiFile.h	/^    bits16 zoomLevels;		\/* Number of zoom levels. *\/$/;"	m	struct:bbiFile
zoomOptions	hg/lib/hui.c	/^static char *zoomOptions[] = {$/;"	v	file:
zoomRadioButtons	hg/lib/hui.c	/^void zoomRadioButtons(char *var, char *curVal)$/;"	f